@mneme-ai/core 1.99.0 → 2.2.0

package/dist/adversarial_twins/index.d.ts

@@ -0,0 +1,52 @@
+/**
+ * v2.1.0 -- ADVERSARIAL TWINS · twin instance debate
+ *
+ * For every important decision, spawn TWO Mneme personas with opposite
+ * priors. Each scores the same evidence pool through Quantum Core. The
+ * convergence point (where their posteriors agree) is the answer.
+ *
+ * Twin A defends "X is good"  →  evidence with prior=0.8
+ * Twin B defends "X is bad"   →  evidence with prior=0.2 (inverted)
+ * Quantum Core collapses both → margin tells us how much they actually
+ *                                disagree after seeing the same data.
+ *
+ * Small margin = they agree. Large margin = real disagreement →
+ * surface to user. This is the "AI peer-reviews itself" pattern.
+ *
+ * Pure function. Composes with v1.94 Quantum Core. Pure-math.
+ */
+import { type CollapseResult } from "../qx_supernova/quantum_core.js";
+export interface TwinEvidence {
+    fact: string;
+    /** 0..1 — how strongly this fact supports Twin A's position. */
+    supportForA: number;
+}
+export interface TwinDebateInput {
+    claim: string;
+    /** Free-form: what Twin A argues for. */
+    positionA: string;
+    positionB: string;
+    evidence: readonly TwinEvidence[];
+    /** Optional priors (default 0.5 each). */
+    priorA?: number;
+    priorB?: number;
+}
+export interface TwinDebateResult {
+    winner: "A" | "B" | "TIE";
+    posteriorA: number;
+    posteriorB: number;
+    margin: number;
+    /** Whether the twins effectively agree (margin small). */
+    agree: boolean;
+    /** Audit transcript: each evidence item's net effect on the margin. */
+    transcript: Array<{
+        fact: string;
+        supportForA: number;
+        impact: number;
+    }>;
+    /** Quantum Core collapse — for downstream auditing. */
+    collapse: CollapseResult<string>;
+}
+export declare function twinDebate(input: TwinDebateInput): TwinDebateResult;
+export declare function formatTwinDebatePulseLine(r: TwinDebateResult): string;
+//# sourceMappingURL=index.d.ts.map

package/dist/adversarial_twins/index.d.ts.map

@@ -0,0 +1 @@
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package/dist/adversarial_twins/index.js

@@ -0,0 +1,58 @@
+/**
+ * v2.1.0 -- ADVERSARIAL TWINS · twin instance debate
+ *
+ * For every important decision, spawn TWO Mneme personas with opposite
+ * priors. Each scores the same evidence pool through Quantum Core. The
+ * convergence point (where their posteriors agree) is the answer.
+ *
+ * Twin A defends "X is good"  →  evidence with prior=0.8
+ * Twin B defends "X is bad"   →  evidence with prior=0.2 (inverted)
+ * Quantum Core collapses both → margin tells us how much they actually
+ *                                disagree after seeing the same data.
+ *
+ * Small margin = they agree. Large margin = real disagreement →
+ * surface to user. This is the "AI peer-reviews itself" pattern.
+ *
+ * Pure function. Composes with v1.94 Quantum Core. Pure-math.
+ */
+import { collapseProbabilityMatrix } from "../qx_supernova/quantum_core.js";
+export function twinDebate(input) {
+    const priorA = input.priorA ?? 0.5;
+    const priorB = input.priorB ?? 0.5;
+    // Build two hypotheses, each with signals derived from the evidence.
+    const signalsA = {};
+    const signalsB = {};
+    for (let i = 0; i < input.evidence.length; i++) {
+        const e = input.evidence[i];
+        const k = `evidence_${i}`;
+        signalsA[k] = e.supportForA;
+        signalsB[k] = 1 - e.supportForA;
+    }
+    const hyps = [
+        { id: "A", value: input.positionA, signals: signalsA, prior: priorA },
+        { id: "B", value: input.positionB, signals: signalsB, prior: priorB },
+    ];
+    const r = collapseProbabilityMatrix(hyps);
+    const posteriorA = r.ranked.find((h) => h.id === "A").posterior;
+    const posteriorB = r.ranked.find((h) => h.id === "B").posterior;
+    const margin = Math.abs(posteriorA - posteriorB);
+    const winner = margin < 0.05 ? "TIE" : (posteriorA > posteriorB ? "A" : "B");
+    const transcript = input.evidence.map((e) => ({
+        fact: e.fact,
+        supportForA: e.supportForA,
+        impact: e.supportForA - 0.5, // signed offset from neutral
+    }));
+    return {
+        winner,
+        posteriorA: Math.round(posteriorA * 1000) / 1000,
+        posteriorB: Math.round(posteriorB * 1000) / 1000,
+        margin: Math.round(margin * 1000) / 1000,
+        agree: margin < 0.05,
+        transcript,
+        collapse: r,
+    };
+}
+export function formatTwinDebatePulseLine(r) {
+    return `TWINS · winner=${r.winner} · A=${r.posteriorA} B=${r.posteriorB} margin=${r.margin} agree=${r.agree}`;
+}
+//# sourceMappingURL=index.js.map

package/dist/adversarial_twins/index.js.map

@@ -0,0 +1 @@
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package/dist/adversarial_twins/twins.test.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=twins.test.d.ts.map

package/dist/adversarial_twins/twins.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"twins.test.d.ts","sourceRoot":"","sources":["../../src/adversarial_twins/twins.test.ts"],"names":[],"mappings":""}

package/dist/adversarial_twins/twins.test.js

@@ -0,0 +1,66 @@
+import { describe, it, expect } from "vitest";
+import { twinDebate, formatTwinDebatePulseLine } from "./index.js";
+describe("v2.1 ADVERSARIAL TWINS · twin instance debate", () => {
+    it("A wins when evidence overwhelmingly supports A", () => {
+        const r = twinDebate({
+            claim: "Postgres for v1",
+            positionA: "Postgres",
+            positionB: "MySQL",
+            evidence: [
+                { fact: "JSONB native support", supportForA: 0.9 },
+                { fact: "Mature ops tooling", supportForA: 0.85 },
+                { fact: "Team familiarity", supportForA: 0.8 },
+            ],
+        });
+        expect(r.winner).toBe("A");
+        expect(r.posteriorA).toBeGreaterThan(r.posteriorB);
+    });
+    it("B wins when evidence overwhelmingly supports B", () => {
+        const r = twinDebate({
+            claim: "Postgres for v1",
+            positionA: "Postgres",
+            positionB: "MySQL",
+            evidence: [
+                { fact: "Cheaper hosting", supportForA: 0.1 },
+                { fact: "Vendor lock-in lower", supportForA: 0.15 },
+            ],
+        });
+        expect(r.winner).toBe("B");
+    });
+    it("TIE when evidence is balanced", () => {
+        const r = twinDebate({
+            claim: "x",
+            positionA: "yes",
+            positionB: "no",
+            evidence: [{ fact: "neutral", supportForA: 0.5 }],
+        });
+        expect(r.winner).toBe("TIE");
+        expect(r.agree).toBe(true);
+    });
+    it("transcript records per-evidence impact", () => {
+        const r = twinDebate({
+            claim: "x",
+            positionA: "A",
+            positionB: "B",
+            evidence: [
+                { fact: "evidence-1", supportForA: 0.8 },
+                { fact: "evidence-2", supportForA: 0.2 },
+            ],
+        });
+        expect(r.transcript.length).toBe(2);
+        expect(r.transcript[0].impact).toBeCloseTo(0.3, 5);
+        expect(r.transcript[1].impact).toBeCloseTo(-0.3, 5);
+    });
+    it("posteriors sum to 1", () => {
+        const r = twinDebate({
+            claim: "x", positionA: "A", positionB: "B",
+            evidence: [{ fact: "y", supportForA: 0.7 }],
+        });
+        expect(r.posteriorA + r.posteriorB).toBeCloseTo(1, 2);
+    });
+    it("formatTwinDebatePulseLine produces compact summary", () => {
+        const r = twinDebate({ claim: "x", positionA: "A", positionB: "B", evidence: [{ fact: "y", supportForA: 0.8 }] });
+        expect(formatTwinDebatePulseLine(r)).toContain("TWINS");
+    });
+});
+//# sourceMappingURL=twins.test.js.map

package/dist/adversarial_twins/twins.test.js.map

@@ -0,0 +1 @@
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package/dist/bloodline/bloodline.test.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=bloodline.test.d.ts.map

package/dist/bloodline/bloodline.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"bloodline.test.d.ts","sourceRoot":"","sources":["../../src/bloodline/bloodline.test.ts"],"names":[],"mappings":""}

package/dist/bloodline/bloodline.test.js

@@ -0,0 +1,96 @@
+import { describe, it, expect } from "vitest";
+import { createGenome, applyEvolutionaryPressure, batchApply, computeDnaFingerprint, personalityReport, formatBloodlinePulseLine, serializeGenome, parseGenome, PRESSURE, } from "./index.js";
+describe("v2.0 BLOODLINE · evolutionary pressure", () => {
+    it("verified-good event reinforces fitness", () => {
+        const g = createGenome();
+        const s = applyEvolutionaryPressure(g, { id: "e1", ts: 1, kind: "verified-good", strainId: "redis", trace: "ok" });
+        expect(s.fitness).toBeCloseTo(1.0 + PRESSURE.REINFORCE_BOOST, 5);
+        expect(s.reinforced).toBeGreaterThan(0);
+    });
+    it("user-rejected event decays fitness multiplicatively", () => {
+        const g = createGenome();
+        applyEvolutionaryPressure(g, { id: "e1", ts: 1, kind: "verified-good", strainId: "redis", trace: "ok" });
+        const before = g.strains.get("redis").fitness;
+        applyEvolutionaryPressure(g, { id: "e2", ts: 2, kind: "user-rejected", strainId: "redis", trace: "no" });
+        const after = g.strains.get("redis").fitness;
+        expect(after).toBeLessThan(before);
+        expect(after).toBeCloseTo(before * PRESSURE.DECAY_FACTOR, 5);
+    });
+    it("hallucination spawns vaccine variant counter + small bump", () => {
+        const g = createGenome();
+        applyEvolutionaryPressure(g, { id: "e1", ts: 1, kind: "hallucination", strainId: "phantom-fn", trace: "AI invented function" });
+        const s = g.strains.get("phantom-fn");
+        expect(s.vaccineVariants).toBe(1);
+        expect(s.fitness).toBeGreaterThan(1.0);
+    });
+    it("apoptosed=true when fitness drops below threshold", () => {
+        const g = createGenome();
+        applyEvolutionaryPressure(g, { id: "init", ts: 1, kind: "verified-good", strainId: "x", trace: "ok" });
+        // Crush it with many rejections
+        for (let i = 0; i < 20; i++) {
+            applyEvolutionaryPressure(g, { id: `r${i}`, ts: 10 + i, kind: "user-rejected", strainId: "x", trace: "no" });
+        }
+        expect(g.strains.get("x").apoptosed).toBe(true);
+    });
+    it("DNA fingerprint is deterministic + stable", () => {
+        const g1 = createGenome();
+        const events = [
+            { id: "a", ts: 1, kind: "verified-good", strainId: "x", trace: "" },
+            { id: "b", ts: 2, kind: "user-rejected", strainId: "y", trace: "" },
+        ];
+        batchApply(g1, events);
+        const dna1 = computeDnaFingerprint(g1);
+        const g2 = createGenome();
+        batchApply(g2, events);
+        const dna2 = computeDnaFingerprint(g2);
+        expect(dna1).toBe(dna2);
+    });
+    it("DNA fingerprint differs when EVENT ORDER differs", () => {
+        const a = [
+            { id: "a", ts: 1, kind: "verified-good", strainId: "x", trace: "" },
+            { id: "b", ts: 2, kind: "hallucination", strainId: "y", trace: "" },
+        ];
+        const b = [
+            { id: "b", ts: 2, kind: "hallucination", strainId: "y", trace: "" },
+            { id: "a", ts: 1, kind: "verified-good", strainId: "x", trace: "" },
+        ];
+        const g1 = createGenome();
+        batchApply(g1, a);
+        const g2 = createGenome();
+        batchApply(g2, b);
+        expect(computeDnaFingerprint(g1)).not.toBe(computeDnaFingerprint(g2));
+    });
+    it("personalityReport produces sigma deviations against baseline", () => {
+        const g = createGenome();
+        applyEvolutionaryPressure(g, { id: "a", ts: 1, kind: "verified-good", strainId: "x", trace: "" });
+        applyEvolutionaryPressure(g, { id: "b", ts: 2, kind: "verified-good", strainId: "x", trace: "" });
+        applyEvolutionaryPressure(g, { id: "c", ts: 3, kind: "verified-good", strainId: "x", trace: "" });
+        const r = personalityReport(g, { meanFitness: { x: 1.0 }, stdDev: { x: 0.05 } });
+        expect(r.sigmaDeviations.length).toBeGreaterThan(0);
+        expect(r.sigmaDeviations[0].strainId).toBe("x");
+        expect(r.sigmaDeviations[0].sigma).toBeGreaterThan(2);
+    });
+    it("personalityReport summary mentions top deviation", () => {
+        const g = createGenome();
+        applyEvolutionaryPressure(g, { id: "a", ts: 1, kind: "verified-good", strainId: "x", trace: "" });
+        const r = personalityReport(g, { meanFitness: { x: 1.0 }, stdDev: { x: 0.05 } });
+        expect(r.summary).toContain("σ");
+    });
+    it("formatBloodlinePulseLine produces compact summary", () => {
+        const g = createGenome();
+        applyEvolutionaryPressure(g, { id: "a", ts: 1, kind: "verified-good", strainId: "x", trace: "" });
+        const line = formatBloodlinePulseLine(g);
+        expect(line).toContain("BLOODLINE");
+        expect(line).toContain("DNA=");
+    });
+    it("serialize → parse round-trip", () => {
+        const g = createGenome();
+        applyEvolutionaryPressure(g, { id: "a", ts: 1, kind: "verified-good", strainId: "x", trace: "" });
+        const text = serializeGenome(g);
+        const parsed = parseGenome(text);
+        expect(parsed).not.toBeNull();
+        expect(parsed.strains.get("x")?.fitness).toBeCloseTo(1.10, 5);
+        expect(parsed.history.length).toBe(1);
+    });
+});
+//# sourceMappingURL=bloodline.test.js.map

package/dist/bloodline/bloodline.test.js.map

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package/dist/bloodline/index.d.ts

@@ -0,0 +1,124 @@
+/**
+ * v2.0.0 -- BLOODLINE · Personal AI Genetic Strain
+ *
+ *   "After 6 months, your Mneme is no longer the same species as anyone
+ *    else's. They cloned the repo — they got the phenotype, not the
+ *    genotype."
+ *
+ * Mneme already ships:
+ *   - MneMeiosis chromosomes (genome of decisions / regrets / wisdoms)
+ *   - ATOM karma per chromosome
+ *   - apoptosis (cell death) on consistently-bad chromosomes
+ *
+ * What was MISSING: evolutionary pressure that selects, mutates, and
+ * propagates chromosomes over time. BLOODLINE adds it. Three loops:
+ *
+ *   ✓ verified-good outcome    → reinforce chromosome fitness +0.10
+ *   ⚠ hallucination caught    → propagate vaccine variant
+ *   ✗ user rejected            → decay branch fitness -0.20
+ *
+ * Plus a DNA fingerprint that's a deterministic hash of the user's
+ * cumulative fitness landscape — guaranteed unique across users after
+ * a few weeks of normal use because no two users land the same
+ * sequence of verified-good / hallucination / rejection events.
+ *
+ * Plus a "personality report" that grades this user's genome against a
+ * neutral baseline: "your AI is 3.7σ more cautious about Redis than
+ * baseline (incident 2026-03-14 still influences your chromosome
+ * `c0ff33-redis-sessions`)".
+ *
+ * Pure function. Deterministic. No external deps.
+ * Backward compatible — composes with chromosomes/vaccines that already exist.
+ */
+export type EventKind = "verified-good" | "hallucination" | "user-rejected" | "user-confirmed";
+export interface BloodlineEvent {
+    /** Stable id (sha256 prefix). */
+    id: string;
+    /** Wall-clock when the event happened. */
+    ts: number;
+    kind: EventKind;
+    /** Which chromosome/strain the event refers to. */
+    strainId: string;
+    /** Free-form narrative for audit. */
+    trace: string;
+    /** Optional 0..1 magnitude (e.g. severity of hallucination). */
+    weight?: number;
+}
+export interface StrainState {
+    id: string;
+    /** Fitness 0..∞. Default 1.0. Reinforce adds, decay multiplies. */
+    fitness: number;
+    /** Number of events this strain has accumulated. */
+    events: number;
+    /** Number of vaccine variants spawned from this strain. */
+    vaccineVariants: number;
+    /** Last-touched timestamp. */
+    lastTouched: number;
+    /** Cumulative reinforcement (positive events). */
+    reinforced: number;
+    /** Cumulative decay (negative events). */
+    decayed: number;
+    /** True if strain is below apoptosis threshold (effectively dead). */
+    apoptosed: boolean;
+}
+export interface Genome {
+    /** Map strainId → state. */
+    strains: Map<string, StrainState>;
+    /** All events ever applied, newest last. */
+    history: BloodlineEvent[];
+}
+export declare function createGenome(): Genome;
+/** Constants tunable per deployment (also exposed for tests). */
+export declare const PRESSURE: {
+    REINFORCE_BOOST: number;
+    DECAY_FACTOR: number;
+    HALLUCINATION_VARIANT: number;
+    APOPTOSIS_THRESHOLD: number;
+};
+/** Apply one event to the genome. Mutates the genome IN PLACE — pure
+ *  in the functional sense that same (genome, event) → same final state. */
+export declare function applyEvolutionaryPressure(genome: Genome, event: BloodlineEvent): StrainState;
+/** Batch-apply many events. */
+export declare function batchApply(genome: Genome, events: readonly BloodlineEvent[]): void;
+/** Compute a deterministic 16-hex DNA fingerprint that's unique across
+ *  users after a handful of events. Sensitive to both WHICH strains and
+ *  WHAT ORDER events arrived in. */
+export declare function computeDnaFingerprint(genome: Genome): string;
+export interface BaselineStats {
+    /** Map strainId → expected mean fitness in the population. */
+    meanFitness: Record<string, number>;
+    /** Map strainId → population stddev. */
+    stdDev: Record<string, number>;
+}
+export interface PersonalityReport {
+    totalStrains: number;
+    apoptosedStrains: number;
+    topReinforced: Array<{
+        strainId: string;
+        fitness: number;
+        reinforced: number;
+    }>;
+    topDecayed: Array<{
+        strainId: string;
+        fitness: number;
+        decayed: number;
+    }>;
+    sigmaDeviations: Array<{
+        strainId: string;
+        fitness: number;
+        baseline: number;
+        sigma: number;
+    }>;
+    /** Cumulative reinforcement minus decay — overall colony health. */
+    healthScore: number;
+    /** Best-effort one-liner for AI agent to surface. */
+    summary: string;
+}
+/** Compute the personality report given the user's genome and an
+ *  optional population baseline. */
+export declare function personalityReport(genome: Genome, baseline?: BaselineStats): PersonalityReport;
+export declare function formatBloodlinePulseLine(genome: Genome): string;
+/** Serialize the genome to JSON for persistence in .mneme/bloodline.json. */
+export declare function serializeGenome(genome: Genome): string;
+export declare function parseGenome(text: string): Genome | null;
+//# sourceMappingURL=index.d.ts.map

package/dist/bloodline/index.d.ts.map

@@ -0,0 +1 @@
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package/dist/bloodline/index.js

@@ -0,0 +1,179 @@
+/**
+ * v2.0.0 -- BLOODLINE · Personal AI Genetic Strain
+ *
+ *   "After 6 months, your Mneme is no longer the same species as anyone
+ *    else's. They cloned the repo — they got the phenotype, not the
+ *    genotype."
+ *
+ * Mneme already ships:
+ *   - MneMeiosis chromosomes (genome of decisions / regrets / wisdoms)
+ *   - ATOM karma per chromosome
+ *   - apoptosis (cell death) on consistently-bad chromosomes
+ *
+ * What was MISSING: evolutionary pressure that selects, mutates, and
+ * propagates chromosomes over time. BLOODLINE adds it. Three loops:
+ *
+ *   ✓ verified-good outcome    → reinforce chromosome fitness +0.10
+ *   ⚠ hallucination caught    → propagate vaccine variant
+ *   ✗ user rejected            → decay branch fitness -0.20
+ *
+ * Plus a DNA fingerprint that's a deterministic hash of the user's
+ * cumulative fitness landscape — guaranteed unique across users after
+ * a few weeks of normal use because no two users land the same
+ * sequence of verified-good / hallucination / rejection events.
+ *
+ * Plus a "personality report" that grades this user's genome against a
+ * neutral baseline: "your AI is 3.7σ more cautious about Redis than
+ * baseline (incident 2026-03-14 still influences your chromosome
+ * `c0ff33-redis-sessions`)".
+ *
+ * Pure function. Deterministic. No external deps.
+ * Backward compatible — composes with chromosomes/vaccines that already exist.
+ */
+import { createHash } from "node:crypto";
+// ============================================================
+// Genome lifecycle
+// ============================================================
+export function createGenome() {
+    return { strains: new Map(), history: [] };
+}
+/** Constants tunable per deployment (also exposed for tests). */
+export const PRESSURE = {
+    REINFORCE_BOOST: 0.10,
+    DECAY_FACTOR: 0.80, // multiply fitness by this on user-rejected
+    HALLUCINATION_VARIANT: 0.05, // small fitness bump for the parent strain when a vaccine variant is spawned
+    APOPTOSIS_THRESHOLD: 0.10, // below this fitness → strain marked apoptosed
+};
+/** Apply one event to the genome. Mutates the genome IN PLACE — pure
+ *  in the functional sense that same (genome, event) → same final state. */
+export function applyEvolutionaryPressure(genome, event) {
+    let strain = genome.strains.get(event.strainId);
+    if (!strain) {
+        strain = {
+            id: event.strainId,
+            fitness: 1.0,
+            events: 0,
+            vaccineVariants: 0,
+            lastTouched: event.ts,
+            reinforced: 0,
+            decayed: 0,
+            apoptosed: false,
+        };
+        genome.strains.set(event.strainId, strain);
+    }
+    const weight = event.weight ?? 1.0;
+    switch (event.kind) {
+        case "verified-good":
+        case "user-confirmed": {
+            const boost = PRESSURE.REINFORCE_BOOST * weight;
+            strain.fitness += boost;
+            strain.reinforced += boost;
+            break;
+        }
+        case "hallucination": {
+            // Spawn a vaccine variant for this strain. Slight reinforcement for
+            // the parent strain because catching a hallucination IS a fitness signal.
+            strain.vaccineVariants += 1;
+            const bump = PRESSURE.HALLUCINATION_VARIANT * weight;
+            strain.fitness += bump;
+            strain.reinforced += bump;
+            break;
+        }
+        case "user-rejected": {
+            const factor = Math.pow(PRESSURE.DECAY_FACTOR, weight);
+            const beforeFit = strain.fitness;
+            strain.fitness *= factor;
+            strain.decayed += (beforeFit - strain.fitness);
+            break;
+        }
+    }
+    strain.events += 1;
+    strain.lastTouched = event.ts;
+    strain.apoptosed = strain.fitness < PRESSURE.APOPTOSIS_THRESHOLD;
+    genome.history.push(event);
+    return strain;
+}
+/** Batch-apply many events. */
+export function batchApply(genome, events) {
+    for (const e of events)
+        applyEvolutionaryPressure(genome, e);
+}
+// ============================================================
+// DNA Fingerprint
+// ============================================================
+/** Compute a deterministic 16-hex DNA fingerprint that's unique across
+ *  users after a handful of events. Sensitive to both WHICH strains and
+ *  WHAT ORDER events arrived in. */
+export function computeDnaFingerprint(genome) {
+    const h = createHash("sha256");
+    // Sort strains by id for stable hashing.
+    const sorted = [...genome.strains.values()].sort((a, b) => a.id.localeCompare(b.id));
+    for (const s of sorted) {
+        h.update(`${s.id}|${s.fitness.toFixed(6)}|${s.events}|${s.vaccineVariants}|${s.apoptosed ? "X" : "."};`);
+    }
+    // Also include event arrival ORDER (a unique-to-user signal).
+    for (const e of genome.history) {
+        h.update(`${e.kind}|${e.strainId};`);
+    }
+    return h.digest("hex").slice(0, 16);
+}
+/** Compute the personality report given the user's genome and an
+ *  optional population baseline. */
+export function personalityReport(genome, baseline) {
+    const all = [...genome.strains.values()];
+    const apoptosed = all.filter((s) => s.apoptosed).length;
+    const topReinforced = [...all].sort((a, b) => b.reinforced - a.reinforced).slice(0, 5).map((s) => ({ strainId: s.id, fitness: s.fitness, reinforced: s.reinforced }));
+    const topDecayed = [...all].sort((a, b) => b.decayed - a.decayed).slice(0, 5).map((s) => ({ strainId: s.id, fitness: s.fitness, decayed: s.decayed }));
+    const sigmaDeviations = [];
+    if (baseline) {
+        for (const s of all) {
+            const mean = baseline.meanFitness[s.id];
+            const sd = baseline.stdDev[s.id];
+            if (mean === undefined || sd === undefined || sd === 0)
+                continue;
+            const sigma = (s.fitness - mean) / sd;
+            if (Math.abs(sigma) >= 1)
+                sigmaDeviations.push({ strainId: s.id, fitness: s.fitness, baseline: mean, sigma });
+        }
+        sigmaDeviations.sort((a, b) => Math.abs(b.sigma) - Math.abs(a.sigma));
+    }
+    const healthScore = all.reduce((sum, s) => sum + s.reinforced - s.decayed, 0);
+    let summary = `BLOODLINE · ${all.length} strain(s) · ${apoptosed} apoptosed · health=${healthScore.toFixed(2)}`;
+    if (sigmaDeviations.length > 0) {
+        const top = sigmaDeviations[0];
+        const direction = top.sigma > 0 ? "more aggressive at reinforcing" : "more cautious about";
+        summary += ` · top deviation: ${top.sigma.toFixed(1)}σ ${direction} '${top.strainId}'`;
+    }
+    return { totalStrains: all.length, apoptosedStrains: apoptosed, topReinforced, topDecayed, sigmaDeviations, healthScore, summary };
+}
+// ============================================================
+// Pulse line + serialization
+// ============================================================
+export function formatBloodlinePulseLine(genome) {
+    const dna = computeDnaFingerprint(genome);
+    const r = personalityReport(genome);
+    return `BLOODLINE · DNA=${dna} · ${r.totalStrains} strain(s) · ${r.apoptosedStrains} apoptosed · health=${r.healthScore.toFixed(2)}`;
+}
+/** Serialize the genome to JSON for persistence in .mneme/bloodline.json. */
+export function serializeGenome(genome) {
+    // StrainState already has an `id` field; just dump the values.
+    return JSON.stringify({
+        strains: [...genome.strains.values()],
+        history: genome.history,
+    });
+}
+export function parseGenome(text) {
+    try {
+        const obj = JSON.parse(text);
+        if (!obj || !Array.isArray(obj.strains) || !Array.isArray(obj.history))
+            return null;
+        const strains = new Map();
+        for (const s of obj.strains)
+            strains.set(s.id, s);
+        return { strains, history: obj.history };
+    }
+    catch {
+        return null;
+    }
+}
+//# sourceMappingURL=index.js.map

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package/dist/dream/dream.test.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=dream.test.d.ts.map