@mneme-ai/core 1.67.1 → 1.69.0

package/dist/hyperscan/cross_source_qa.js

@@ -0,0 +1,219 @@
+/**
+ * v1.69.0 -- HYPERSCAN H3: CROSS-SOURCE Q&A FUSION.
+ *
+ * Wild idea: when commit messages don't fully describe a feature
+ * (HTC was named only AFTER its first commit, so commit search for
+ * "HTC compression" returns weak results), Mneme should NOT just
+ * trust commit retrieval. Fuse retrieval across N orthogonal sources:
+ *
+ *   1. Commit subjects + bodies      (existing)
+ *   2. README.md sections             (existing-ish)
+ *   3. CHANGELOG.md entries           (NEW - structured release notes)
+ *   4. Source-file top docstrings     (NEW - module docs)
+ *   5. package.json description       (NEW - terse, but authoritative)
+ *
+ * Each source scored independently via TF-Jaccard. Final trust is a
+ * weighted fusion. When sources align (high cross-source agreement),
+ * trust is HIGH. When they diverge, trust drops but we report all
+ * sources so the user can see what each says.
+ *
+ * The wild bit: SHAPE-SHIFTING. The "winning answer" is constructed
+ * by taking the BEST sentence from EACH source and stitching them
+ * into a multi-witness reply.
+ */
+import { existsSync, readFileSync, readdirSync, statSync } from "node:fs";
+import { join } from "node:path";
+import { execSync } from "node:child_process";
+const STOPWORDS = new Set([
+    "the", "and", "for", "with", "this", "that", "from", "into", "when", "then",
+    "function", "const", "var", "let", "true", "false", "null", "return", "import", "export",
+    "type", "interface", "class", "public", "private", "static", "async", "await",
+    "what", "how", "why", "where", "which", "who", "use", "uses", "used",
+]);
+function tokenize(s) {
+    return new Set((s.toLowerCase().match(/[a-z][a-z0-9_-]+/g) ?? []).filter((t) => t.length >= 3 && !STOPWORDS.has(t)));
+}
+function jaccard(a, b) {
+    if (a.size === 0 || b.size === 0)
+        return 0;
+    let inter = 0;
+    for (const x of a)
+        if (b.has(x))
+            inter += 1;
+    return inter / (a.size + b.size - inter);
+}
+function readMaybeFile(p) {
+    if (!existsSync(p))
+        return "";
+    try {
+        return readFileSync(p, "utf8");
+    }
+    catch {
+        return "";
+    }
+}
+function readCommitSubjects(repoRoot, max = 500) {
+    try {
+        const r = execSync(`git -C "${repoRoot}" log --max-count=${max} --pretty=format:%s%n%b%n---`, { encoding: "utf8", stdio: ["ignore", "pipe", "ignore"], timeout: 3000 });
+        return r.split(/\n---\n/).map((s) => s.trim()).filter(Boolean);
+    }
+    catch {
+        return [];
+    }
+}
+function splitSentences(text) {
+    return text.split(/(?<=[.!?])\s+(?=[A-Z])/).map((s) => s.trim()).filter((s) => s.length >= 10);
+}
+function rankSnippets(query, source, text, citation) {
+    const sentences = splitSentences(text);
+    const hits = [];
+    for (const sent of sentences) {
+        const score = jaccard(query, tokenize(sent));
+        if (score >= 0.1)
+            hits.push({ source, citation, excerpt: sent.slice(0, 280), score });
+    }
+    hits.sort((a, b) => b.score - a.score);
+    return hits.slice(0, 3);
+}
+function readSourceDocstrings(repoRoot, max = 50) {
+    const out = [];
+    const skip = new Set(["node_modules", ".git", "dist", "build", ".mneme"]);
+    const walk = (dir) => {
+        if (out.length >= max)
+            return;
+        let entries = [];
+        try {
+            entries = readdirSync(dir);
+        }
+        catch {
+            return;
+        }
+        for (const e of entries) {
+            if (skip.has(e))
+                continue;
+            const p = join(dir, e);
+            try {
+                const s = statSync(p);
+                if (s.isDirectory())
+                    walk(p);
+                else if (/\.ts$/.test(e)) {
+                    let content = "";
+                    try {
+                        content = readFileSync(p, "utf8");
+                    }
+                    catch {
+                        continue;
+                    }
+                    // Top-of-file docstring: `/** ... */` at the very start.
+                    const m = content.match(/^\s*\/\*\*([\s\S]*?)\*\//);
+                    if (m)
+                        out.push({ path: p, doc: m[1].replace(/^\s*\*/gm, "").trim() });
+                    if (out.length >= max)
+                        return;
+                }
+            }
+            catch { /* */ }
+        }
+    };
+    walk(repoRoot);
+    return out;
+}
+export function crossSourceAsk(repoRoot, question, opts) {
+    const t0 = Date.now();
+    const query = tokenize(question);
+    const hits = [];
+    // 1. Commits
+    for (const commit of readCommitSubjects(repoRoot, opts?.maxCommits ?? 500)) {
+        const ranked = rankSnippets(query, "commit", commit, "commit");
+        for (const h of ranked.slice(0, 1))
+            hits.push(h);
+        if (hits.length >= 60)
+            break;
+    }
+    // 2. README
+    const readme = readMaybeFile(join(repoRoot, "README.md"));
+    if (readme)
+        hits.push(...rankSnippets(query, "readme", readme, "README.md"));
+    // 3. CHANGELOG
+    const changelog = readMaybeFile(join(repoRoot, "CHANGELOG.md"));
+    if (changelog)
+        hits.push(...rankSnippets(query, "changelog", changelog, "CHANGELOG.md"));
+    // 4. Docstrings
+    for (const { path, doc } of readSourceDocstrings(repoRoot, opts?.maxFiles ?? 50)) {
+        const ranked = rankSnippets(query, "docstring", doc, path.split(/[\\/]/).slice(-2).join("/"));
+        hits.push(...ranked.slice(0, 1));
+    }
+    // 5. package.json description
+    const pkgRaw = readMaybeFile(join(repoRoot, "package.json"));
+    if (pkgRaw) {
+        try {
+            const pkg = JSON.parse(pkgRaw);
+            const desc = String(pkg["description"] ?? "");
+            if (desc)
+                hits.push(...rankSnippets(query, "package-json", desc, "package.json"));
+        }
+        catch { /* */ }
+    }
+    // Per-source max scores.
+    const perSourceMax = { commit: 0, readme: 0, changelog: 0, docstring: 0, "package-json": 0 };
+    const presentSources = new Set();
+    for (const h of hits) {
+        if (h.score > perSourceMax[h.source])
+            perSourceMax[h.source] = h.score;
+        presentSources.add(h.source);
+    }
+    // Trust fusion: weighted avg of per-source max, weighted by source authority.
+    const WEIGHTS = {
+        docstring: 1.2, // module-level intent
+        changelog: 1.1, // structured release notes
+        readme: 1.0, // canonical user-facing doc
+        commit: 0.8, // many noisy entries
+        "package-json": 0.6, // terse but authoritative
+    };
+    let weightedSum = 0, weightSum = 0;
+    for (const k of Object.keys(perSourceMax)) {
+        const w = WEIGHTS[k];
+        weightedSum += perSourceMax[k] * w;
+        weightSum += w;
+    }
+    const baseTrust = weightSum === 0 ? 0 : weightedSum / weightSum;
+    // Cross-source agreement boost: 2+ sources with >= 0.2 -> +0.15.
+    const strongSources = Object.values(perSourceMax).filter((v) => v >= 0.2).length;
+    const agreementBoost = strongSources >= 3 ? 0.25 : strongSources >= 2 ? 0.15 : 0;
+    const trust = Math.min(1, baseTrust * 2 + agreementBoost); // *2 because Jaccard is naturally low
+    let trustLabel;
+    if (trust >= 0.7)
+        trustLabel = "HIGH";
+    else if (trust >= 0.4)
+        trustLabel = "MEDIUM";
+    else
+        trustLabel = "LOW";
+    // Build fused answer: top snippet from each source that contributed.
+    const bestPerSource = new Map();
+    for (const h of hits) {
+        const prev = bestPerSource.get(h.source);
+        if (!prev || h.score > prev.score)
+            bestPerSource.set(h.source, h);
+    }
+    const fusedLines = [];
+    for (const k of ["docstring", "changelog", "readme", "commit", "package-json"]) {
+        const h = bestPerSource.get(k);
+        if (h && h.score >= 0.1)
+            fusedLines.push(`[${k}@${h.citation}] ${h.excerpt}`);
+    }
+    const fusedAnswer = fusedLines.length === 0
+        ? "(no source had sufficient overlap with the question; trust LOW)"
+        : fusedLines.join("\n\n");
+    hits.sort((a, b) => b.score - a.score);
+    return {
+        question,
+        hits: hits.slice(0, 10),
+        sourcesPresent: [...presentSources],
+        trust,
+        trustLabel,
+        fusedAnswer,
+        perSourceMax,
+        ms: Date.now() - t0,
+    };
+}
+//# sourceMappingURL=cross_source_qa.js.map

package/dist/hyperscan/cross_source_qa.js.map

@@ -0,0 +1 @@
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package/dist/hyperscan/hyperscan.test.d.ts

@@ -0,0 +1,5 @@
+/**
+ * v1.69.0 -- HYPERSCAN PROTOCOL test suite.
+ */
+export {};
+//# sourceMappingURL=hyperscan.test.d.ts.map

package/dist/hyperscan/hyperscan.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"hyperscan.test.d.ts","sourceRoot":"","sources":["../../src/hyperscan/hyperscan.test.ts"],"names":[],"mappings":"AAAA;;GAEG"}

package/dist/hyperscan/hyperscan.test.js

@@ -0,0 +1,191 @@
+/**
+ * v1.69.0 -- HYPERSCAN PROTOCOL test suite.
+ */
+import { describe, it, expect, beforeEach, afterEach } from "vitest";
+import { mkdtempSync, rmSync, mkdirSync, writeFileSync } from "node:fs";
+import { tmpdir } from "node:os";
+import { join } from "node:path";
+import { execSync } from "node:child_process";
+import { extractEntities, proseScan } from "./prose_shadow.js";
+import { parseTriples, crossCitationGround } from "./cross_citation.js";
+import { crossSourceAsk } from "./cross_source_qa.js";
+import { generateDust, computeCoverage, clusterDust, readAbstracts } from "./nucleus_dust_htc.js";
+import { buildMolecule, query } from "./hyperscan_molecule.js";
+function setup() { return mkdtempSync(join(tmpdir(), "mneme-hs-")); }
+function cleanup(r) { try {
+    rmSync(r, { recursive: true, force: true });
+}
+catch { /* */ } }
+function initGit(r, files, commits) {
+    execSync(`git init --quiet -b main`, { cwd: r, stdio: "ignore" });
+    execSync(`git config user.email "t@t.t"`, { cwd: r, stdio: "ignore" });
+    execSync(`git config user.name "t"`, { cwd: r, stdio: "ignore" });
+    execSync(`git config commit.gpgsign false`, { cwd: r, stdio: "ignore" });
+    for (const f of files) {
+        const dir = join(r, f.path, "..");
+        mkdirSync(dir, { recursive: true });
+        writeFileSync(join(r, f.path), f.content, "utf8");
+    }
+    execSync(`git add -A`, { cwd: r, stdio: "ignore" });
+    for (const c of commits) {
+        writeFileSync(join(r, `m-${c.replace(/\W/g, "_")}.txt`), c, "utf8");
+        execSync(`git add -A`, { cwd: r, stdio: "ignore" });
+        execSync(`git commit -m "${c}" --no-gpg-sign --quiet`, { cwd: r, stdio: "ignore" });
+    }
+}
+// ─── H1 PROSE SHADOW SCAN ────────────────────────────────────────────
+describe("v1.69 Hyperscan H1 · Prose Shadow Scan", () => {
+    let r;
+    beforeEach(() => { r = setup(); writeFileSync(join(r, "package.json"), JSON.stringify({ name: "test", dependencies: { typescript: "5.0.0", react: "18.0.0" } }), "utf8"); });
+    afterEach(() => cleanup(r));
+    it("extracts title-cased + package-shaped + acronym entities", () => {
+        const ents = extractEntities("WraithMonitor handles tracing via wraith-utils-2099 with ACME-Lib 3.0");
+        const surfaces = ents.map((e) => e.surface);
+        expect(surfaces).toContain("WraithMonitor");
+        expect(surfaces.some((s) => s.startsWith("wraith-utils"))).toBe(true);
+    });
+    it("catches fake package-shape with digits + no citation", () => {
+        const r1 = proseScan(r, "wraith-utils-2099 is integrated for caching across services");
+        const wraith = r1.suspects.find((s) => s.entity.toLowerCase().includes("wraith"));
+        expect(wraith).toBeDefined();
+        expect(wraith.confidence).toBeGreaterThanOrEqual(0.8);
+    });
+    it("recognizes known-real services (whitelists them)", () => {
+        const r1 = proseScan(r, "We use Sentry for error tracking and Datadog for APM");
+        expect(r1.recognized.length).toBeGreaterThan(0);
+        expect(r1.suspects.find((s) => s.entity.toLowerCase() === "sentry")).toBeUndefined();
+    });
+    it("flags title-cased unknowns with no citation", () => {
+        const r1 = proseScan(r, "FakeyMcFakeFace is our production OAuth library");
+        expect(r1.suspects.find((s) => s.entity.includes("FakeyMcFake"))).toBeDefined();
+    });
+    it("does NOT flag real deps", () => {
+        const r1 = proseScan(r, "TypeScript handles our types and React renders the UI");
+        // Both are in KNOWN_REAL_NAMES; should be recognized not suspected.
+        expect(r1.suspects.length).toBe(0);
+    });
+});
+// ─── H2 CROSS-CITATION GROUND ────────────────────────────────────────
+describe("v1.69 Hyperscan H2 · Cross-Citation Ground", () => {
+    let r;
+    beforeEach(() => { r = setup(); });
+    afterEach(() => cleanup(r));
+    it("parses triples from prose", () => {
+        const tr = parseTriples("auth.ts handles login and billing.ts implements charging");
+        expect(tr.length).toBeGreaterThanOrEqual(2);
+        expect(tr[0]?.subject).toContain("auth");
+    });
+    it("flags citation gap when files don't exist", () => {
+        const r1 = crossCitationGround(r, "PhantomMonitor handles distributed tracing across services");
+        expect(r1.gaps).toBeGreaterThanOrEqual(0);
+        expect(r1.groundScore).toBeLessThanOrEqual(1);
+    });
+    it("grounds when subject + object co-occur in source", () => {
+        writeFileSync(join(r, "auth.ts"), "// auth login bcrypt handler\nexport function login() {}\n", "utf8");
+        const r1 = crossCitationGround(r, "auth.ts handles login routing for users");
+        expect(r1.groundScore).toBeGreaterThan(0);
+    });
+});
+// ─── H3 CROSS-SOURCE Q&A FUSION ──────────────────────────────────────
+describe("v1.69 Hyperscan H3 · Cross-Source Q&A Fusion", () => {
+    let r;
+    beforeEach(() => { r = setup(); });
+    afterEach(() => cleanup(r));
+    it("fuses retrieval across multiple sources", () => {
+        initGit(r, [
+            { path: "README.md", content: "# Project\n\nHTC compression cuts token spend by 100x via three-layer pre-compression of git history into LLM-consumable form.\n" },
+            { path: "CHANGELOG.md", content: "## [1.0.0]\n- Added HTC compression for git history\n" },
+            { path: "package.json", content: JSON.stringify({ name: "p", description: "HTC-powered memory layer." }) },
+            { path: "htc.ts", content: "/**\n * HTC: hierarchical token cache for compressing commit history.\n */\nexport const x = 1;\n" },
+        ], ["feat: add HTC compression"]);
+        const r1 = crossSourceAsk(r, "what is HTC compression and how does it work");
+        expect(r1.sourcesPresent.length).toBeGreaterThanOrEqual(2);
+        expect(["MEDIUM", "HIGH"]).toContain(r1.trustLabel);
+        expect(r1.fusedAnswer).toContain("HTC");
+    });
+    it("reports LOW trust when nothing matches", () => {
+        initGit(r, [{ path: "README.md", content: "Only generic stuff here." }], ["initial"]);
+        const r1 = crossSourceAsk(r, "what is fooBarBaz compression");
+        expect(r1.trustLabel).toBe("LOW");
+    });
+});
+// ─── H4 NUCLEUS DUST HTC ─────────────────────────────────────────────
+describe("v1.69 Hyperscan H4 · Nucleus Dust HTC", () => {
+    let r;
+    beforeEach(() => { r = setup(); });
+    afterEach(() => cleanup(r));
+    it("generates abstracts for commits + file docstrings", () => {
+        initGit(r, [
+            { path: "src/foo.ts", content: "/**\n * Foo module: does the foo thing.\n */\nexport const x = 1;\n" },
+            { path: "src/bar.ts", content: "/**\n * Bar module: handles bars.\n */\nexport const y = 2;\n" },
+        ], ["feat(foo): add foo", "feat(bar): add bar", "fix: tidy"]);
+        const { added } = generateDust(r);
+        expect(added).toBeGreaterThanOrEqual(2);
+        const abstracts = readAbstracts(r);
+        expect(abstracts.length).toBeGreaterThanOrEqual(2);
+    });
+    it("coverage increases after dust generation", () => {
+        initGit(r, [{ path: "src/foo.ts", content: "/** Foo. */\nexport const x = 1;\n" }], ["feat: foo"]);
+        const before = computeCoverage(r).coveragePct;
+        generateDust(r);
+        const after = computeCoverage(r).coveragePct;
+        expect(after).toBeGreaterThanOrEqual(before);
+        expect(after).toBeGreaterThan(0);
+    });
+    it("idempotent: re-running adds 0", () => {
+        initGit(r, [{ path: "src/foo.ts", content: "/** Foo. */\nexport const x = 1;\n" }], ["feat: foo"]);
+        generateDust(r);
+        const second = generateDust(r);
+        expect(second.added).toBe(0);
+    });
+    it("clusterDust groups similar abstracts", () => {
+        initGit(r, [], ["feat(auth): add login", "feat(auth): add logout", "fix(auth): retry", "feat(billing): stripe"]);
+        generateDust(r);
+        const clusters = clusterDust(r);
+        expect(clusters.length).toBeGreaterThan(0);
+    });
+});
+// ─── HYPERSCAN MOLECULE ──────────────────────────────────────────────
+describe("v1.69 Hyperscan · Shape-shifting Molecule", () => {
+    it("builds a molecule with 4 forms", () => {
+        const m = buildMolecule({
+            text: "function login() handles auth via bcrypt at src/auth.ts",
+            source: { kind: "commit", ref: "abc123" },
+            epoch: "2026-01-01T00:00:00Z",
+        });
+        expect(m.textForm).toContain("login");
+        expect(m.vectorForm.size).toBeGreaterThan(0);
+        expect(m.structuralForm.functions).toContain("login");
+        expect(m.structuralForm.paths.some((p) => p.endsWith(".ts"))).toBe(true);
+        expect(m.temporalForm.epoch).toBe("2026-01-01T00:00:00Z");
+    });
+    it("query with cosine ranks by vector similarity", () => {
+        const mA = buildMolecule({ text: "auth bcrypt login flow", source: { kind: "commit", ref: "a" } });
+        const mB = buildMolecule({ text: "billing stripe charge", source: { kind: "commit", ref: "b" } });
+        const result = query([mA, mB], "cosine", { text: "auth login" });
+        expect(result[0]?.molecule.id).toBe(mA.id);
+    });
+    it("query with structural ranks by AST shape overlap", () => {
+        const mA = buildMolecule({ text: "function login() at src/auth.ts", source: { kind: "commit", ref: "a" } });
+        const mB = buildMolecule({ text: "class Billing in billing.js", source: { kind: "commit", ref: "b" } });
+        const result = query([mA, mB], "structural", { text: "function login() at src/auth.ts" });
+        expect(result[0]?.molecule.id).toBe(mA.id);
+    });
+    it("query with hybrid fuses 4 algorithm scores", () => {
+        const m1 = buildMolecule({ text: "auth login bcrypt secure flow", source: { kind: "commit", ref: "a" } });
+        const m2 = buildMolecule({ text: "billing stripe payment processing", source: { kind: "commit", ref: "b" } });
+        const result = query([m1, m2], "hybrid", { text: "auth login bcrypt" });
+        expect(result[0]?.molecule.id).toBe(m1.id);
+        expect(result[0]?.scores.cosine).toBeDefined();
+        expect(result[0]?.scores.jaccard).toBeDefined();
+        expect(result[0]?.scores.structural).toBeDefined();
+    });
+    it("query with temporal ranks by epoch closeness", () => {
+        const target = "2026-05-12T00:00:00Z";
+        const close = buildMolecule({ text: "x", source: { kind: "c", ref: "1" }, epoch: "2026-05-11T00:00:00Z" });
+        const far = buildMolecule({ text: "x", source: { kind: "c", ref: "2" }, epoch: "2020-01-01T00:00:00Z" });
+        const result = query([close, far], "temporal", { epoch: target });
+        expect(result[0]?.molecule.id).toBe(close.id);
+    });
+});
+//# sourceMappingURL=hyperscan.test.js.map

package/dist/hyperscan/hyperscan.test.js.map

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package/dist/hyperscan/hyperscan_molecule.d.ts

@@ -0,0 +1,76 @@
+/**
+ * v1.69.0 -- HYPERSCAN MOLECULE (shape-shifting data structure).
+ *
+ * The wild bit: a single MOLECULE holds FOUR orthogonal forms of one
+ * piece of knowledge. The caller asks for whichever FORM best
+ * matches their query class -- the molecule "shape-shifts" without
+ * recomputation.
+ *
+ *   textForm        plain-English summary (~30 tokens)
+ *   vectorForm      bag-of-words vector for cosine retrieval
+ *   structuralForm  AST-shape signature (functions / paths / symbols)
+ *   temporalForm    commit-chain neighborhood (predecessor / successor SHAs)
+ *
+ * "Mix algorithm สุดโต่ง": at query time the caller picks ONE of N
+ * retrieval algorithms (Jaccard / cosine / structural-match /
+ * temporal-distance / hybrid-weighted) and the molecule emits the
+ * matching form. Different forms NEVER recomputed -- pre-built.
+ *
+ * This is the data structure the user asked for: "โมเลกุลใหม่
+ * มารองรับ" + "การสลับร่างแปลงร่าง" + "mix algorithm บ้าๆสุดโต่ง".
+ */
+export type MoleculeForm = "text" | "vector" | "structural" | "temporal";
+export interface HyperscanMolecule {
+    id: string;
+    /** Plain-English summary. */
+    textForm: string;
+    /** Bag-of-words vector: word -> count. */
+    vectorForm: Map<string, number>;
+    /** AST-shape signature: {functions, classes, paths, symbols}. */
+    structuralForm: {
+        functions: string[];
+        classes: string[];
+        paths: string[];
+        symbols: string[];
+    };
+    /** Temporal links to neighboring molecules. */
+    temporalForm: {
+        predecessors: string[];
+        successors: string[];
+        epoch: string;
+    };
+    /** Source provenance. */
+    source: {
+        kind: string;
+        ref: string;
+    };
+}
+export interface BuildMoleculeInput {
+    text: string;
+    source: {
+        kind: string;
+        ref: string;
+    };
+    epoch?: string;
+    predecessors?: string[];
+    successors?: string[];
+}
+/** Build a molecule from a text excerpt + provenance. */
+export declare function buildMolecule(input: BuildMoleculeInput): HyperscanMolecule;
+export type RetrievalAlgo = "jaccard" | "cosine" | "structural" | "temporal" | "hybrid";
+export interface QueryInput {
+    text?: string;
+    epoch?: string;
+}
+export interface MoleculeMatch {
+    molecule: HyperscanMolecule;
+    /** Per-algo scores; populated when caller asked for hybrid. */
+    scores: Partial<Record<RetrievalAlgo, number>>;
+    /** Final fused score the caller will rank by. */
+    finalScore: number;
+}
+/** Query a corpus of molecules using one of N retrieval algorithms.
+ *  "hybrid" fuses cosine + jaccard + structural + temporal via the
+ *  ALGO_WEIGHTS mix (the wild algorithm-mix the user requested). */
+export declare function query(molecules: HyperscanMolecule[], algo: RetrievalAlgo, q: QueryInput): MoleculeMatch[];
+//# sourceMappingURL=hyperscan_molecule.d.ts.map

package/dist/hyperscan/hyperscan_molecule.d.ts.map

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