npm - @mmnto/totem - Versions diffs - 1.63.0 → 1.64.0 - Mend

@mmnto/totem 1.63.0 → 1.64.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (13) hide show

package/dist/ingest/pipeline.d.ts +10 -0
package/dist/ingest/pipeline.d.ts.map +1 -1
package/dist/ingest/pipeline.js +52 -8
package/dist/ingest/pipeline.js.map +1 -1
package/dist/ingest/pipeline.test.js +27 -21
package/dist/ingest/pipeline.test.js.map +1 -1
package/dist/store/lance-store.d.ts +11 -0
package/dist/store/lance-store.d.ts.map +1 -1
package/dist/store/lance-store.js +30 -0
package/dist/store/lance-store.js.map +1 -1
package/dist/store/lance-store.test.js +20 -0
package/dist/store/lance-store.test.js.map +1 -1
package/package.json +1 -1

package/dist/ingest/pipeline.d.ts CHANGED Viewed

@@ -74,5 +74,15 @@ export declare function runSync(config: TotemConfig, options: SyncOptions): Prom
     chunksProcessed: number;
     filesProcessed: number;
     totalChunks: number;
+    orphansPurged: number;
 }>;
+/**
+ * Reconcile indexed paths against the working tree: an indexed path with no live
+ * counterpart is an orphan to purge (mmnto-ai/totem#2151). Compares on a
+ * separator-normalized key but RETURNS THE RAW indexed path (the caller deletes
+ * via `deleteByFile`, a stored-literal match). Independent of the git diff
+ * window — that independence is what self-heals deletions the baseline already
+ * advanced past, and de-targeted / newly-ignored files git never reports.
+ */
+export declare function computeOrphanPaths(indexedRawPaths: string[], liveRelativePaths: string[]): string[];
 //# sourceMappingURL=pipeline.d.ts.map

package/dist/ingest/pipeline.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"pipeline.d.ts","sourceRoot":"","sources":["../../src/ingest/pipeline.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAOvD,OAAO,KAAK,EAAS,WAAW,EAAa,MAAM,aAAa,CAAC;AAyCjE;;;GAGG;AACH;;;;;GAKG;AACH,wBAAgB,eAAe,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,WAAW,GAAG,IAAI,CAuB3E;AAmCD;;;;;;;;GAQG;AACH,MAAM,WAAW,gBAAgB;IAC/B,UAAU,EAAE,MAAM,CAAC;IACnB;;;;OAIG;IACH,MAAM,EAAE,MAAM,CAAC;IACf,QAAQ,EAAE,MAAM,CAAC;IACjB,+FAA+F;IAC/F,UAAU,EAAE,MAAM,CAAC;CACpB;AAED;;;;;;;;;;;GAWG;AACH,MAAM,WAAW,aAAa;IAC5B,MAAM,EAAE,MAAM,CAAC;IACf,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,gBAAgB,EAAE,CAAC;IAC9B,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAED,2EAA2E;AAC3E,eAAO,MAAM,qBAAqB,8BAA8B,CAAC;AAEjE;;;;;;;;;;;;GAYG;AACH,wBAAgB,kBAAkB,CAAC,KAAK,EAAE;IACxC,SAAS,EAAE,gBAAgB,EAAE,CAAC;IAC9B,OAAO,EAAE,MAAM,GAAG,IAAI,GAAG,SAAS,CAAC;IACnC,SAAS,EAAE,IAAI,CAAC;CACjB,GAAG,aAAa,CAUhB;AAED,wBAAsB,OAAO,CAC3B,MAAM,EAAE,WAAW,EACnB,OAAO,EAAE,WAAW,GACnB,OAAO,CAAC;IACT,eAAe,EAAE,MAAM,CAAC;IACxB,cAAc,EAAE,MAAM,CAAC;IACvB,WAAW,EAAE,MAAM,CAAC;IACpB,aAAa,EAAE,MAAM,CAAC;CACvB,CAAC,CAUD;AAYD;;;;;;;GAOG;AACH,wBAAgB,kBAAkB,CAChC,eAAe,EAAE,MAAM,EAAE,EACzB,iBAAiB,EAAE,MAAM,EAAE,GAC1B,MAAM,EAAE,CAGV"}

package/dist/ingest/pipeline.js CHANGED Viewed

@@ -119,6 +119,27 @@ export async function runSync(config, options) {
     const totemDir = path.join(projectRoot, config.totemDir);
     return withLock(totemDir, () => runSyncInner(config, options), (msg) => log(msg));
 }
+/**
+ * Normalize a path separator to forward slashes for orphan COMPARISON only.
+ * Deletes always use the raw stored path (mmnto-ai/totem#2151 W1): `deleteByFile`
+ * matches the stored literal, so a legacy `src\x.ts` row must delete with
+ * backslashes while never being false-orphaned against a forward-slash live path.
+ */
+function normalizeRel(p) {
+    return p.replace(/\\/g, '/');
+}
+/**
+ * Reconcile indexed paths against the working tree: an indexed path with no live
+ * counterpart is an orphan to purge (mmnto-ai/totem#2151). Compares on a
+ * separator-normalized key but RETURNS THE RAW indexed path (the caller deletes
+ * via `deleteByFile`, a stored-literal match). Independent of the git diff
+ * window — that independence is what self-heals deletions the baseline already
+ * advanced past, and de-targeted / newly-ignored files git never reports.
+ */
+export function computeOrphanPaths(indexedRawPaths, liveRelativePaths) {
+    const live = new Set(liveRelativePaths.map(normalizeRel));
+    return indexedRawPaths.filter((raw) => !live.has(normalizeRel(raw)));
+}
 async function runSyncInner(config, options) {
     const { projectRoot, onProgress } = options;
     let incremental = options.incremental;
@@ -162,12 +183,22 @@ async function runSyncInner(config, options) {
         }
         else {
             const changedSet = new Set(changedPaths);
-            const allFileSet = new Set(allFiles.map((f) => f.relativePath));
-            // Partition: files that still exist get re-indexed, missing files get deleted
+            // Re-embed stays diff-scoped: only changed files that still exist.
             filesToProcess = allFiles.filter((f) => changedSet.has(f.relativePath));
-            deletedPaths = changedPaths.filter((p) => !allFileSet.has(p));
+            // Deletion is reconciliation-based, NOT diff-derived (mmnto-ai/totem#2151):
+            // purge any indexed path no longer in the working tree, regardless of the
+            // git diff window — self-heals deletions, renames-into-ignored, and
+            // de-targeted files even after the baseline advanced past them. On read
+            // failure, skip the purge this run (warn, no false purge); a later sync heals.
+            try {
+                deletedPaths = computeOrphanPaths(await store.getDistinctPaths(), allFiles.map((f) => f.relativePath));
+                // totem-context: intentional warn+skip on a getDistinctPaths read failure (mmnto-ai/totem#2151 Q3, cohort-endorsed) — never a false purge; a later sync reconciles, and the Warning below means it is not silent degradation.
+            }
+            catch (err) {
+                log(`  Warning: orphan reconciliation skipped (getDistinctPaths failed): ${err instanceof Error ? err.message : String(err)}`);
+            }
             log(`Incremental sync: ${filesToProcess.length} changed files` +
-                (deletedPaths.length > 0 ? `, ${deletedPaths.length} deleted` : '') +
+                (deletedPaths.length > 0 ? `, ${deletedPaths.length} orphan candidate(s)` : '') +
                 ` (of ${allFiles.length} total)`);
         }
     }
@@ -177,16 +208,24 @@ async function runSyncInner(config, options) {
         filesToProcess = allFiles;
         log(`Full sync: ${filesToProcess.length} files to process`);
     }
-    // 3b. Purge chunks from deleted files before ingesting new ones
+    // 3b. Purge orphaned chunks (reconciliation result) before ingesting new ones.
+    let orphansPurged = 0;
     for (const deletedPath of deletedPaths) {
         try {
             await store.deleteByFile(deletedPath);
-            log(`  Purged chunks for deleted file: ${deletedPath}`);
+            orphansPurged++;
+            log(`  Purged chunks for orphaned file: ${deletedPath}`);
+            // totem-context: best-effort per-file purge — warn+skip; the orphan stays
+            // indexed and the next reconciliation retries it (deleteByFile is idempotent),
+            // so one bad row never aborts the whole sync (mmnto-ai/totem#2151).
         }
         catch (err) {
             log(`  Warning: failed to purge ${deletedPath}: ${err instanceof Error ? err.message : String(err)}`);
         }
     }
+    if (orphansPurged > 0) {
+        log(`Purged ${orphansPurged} orphaned file(s) from the index.`);
+    }
     // 4. Chunk files and stream to LanceDB in batches (bounded memory)
     let totalChunks = 0;
     let buffer = [];
@@ -246,8 +285,12 @@ async function runSyncInner(config, options) {
     // Flush remaining chunks
     await flushBuffer();
     log(`Sync complete: ${totalChunks} chunks from ${filesToProcess.length} files`);
-    // Build/rebuild FTS index for hybrid search (FTS indexes don't auto-update on add)
-    if (totalChunks > 0) {
+    // Build/rebuild FTS index for hybrid search (FTS indexes don't auto-update on
+    // add — or on delete: a purge-only sync must still rebuild so the FTS view
+    // drops the orphaned files' content, mmnto-ai/totem#2151 Tenet 20).
+    // Sum (not ||): both are non-negative counts, so > 0 iff either is — and it
+    // sidesteps the logical-OR numeric-default lint without changing the meaning.
+    if (totalChunks + orphansPurged > 0) {
         log('Building FTS index for hybrid search...');
         await store.createFtsIndex();
         log(store.ftsIndexReady
@@ -293,6 +336,7 @@ async function runSyncInner(config, options) {
         chunksProcessed: totalChunks,
         filesProcessed: filesToProcess.length,
         totalChunks: totalStoredChunks,
+        orphansPurged,
     };
 }
 //# sourceMappingURL=pipeline.js.map

package/dist/ingest/pipeline.js.map CHANGED Viewed

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package/dist/ingest/pipeline.test.js CHANGED Viewed

@@ -4,7 +4,7 @@ import * as path from 'node:path';
 import { afterEach, beforeEach, describe, expect, it } from 'vitest';
 import { TotemConfigSchema } from '../config-schema.js';
 import { cleanTmpDir } from '../test-utils.js';
-import { buildIndexManifest, INDEX_MANIFEST_SCHEMA, runSync } from './pipeline.js';
+import { buildIndexManifest, computeOrphanPaths, INDEX_MANIFEST_SCHEMA, runSync, } from './pipeline.js';
 // Import the internal helpers via a workaround — we test the state file contract
 // since readSyncState/writeSyncState are not exported directly.
 const SYNC_STATE_FILE = 'cache/sync-state.json';
@@ -57,26 +57,32 @@ describe('sync state persistence', () => {
         expect(parsed).toBeNull();
     });
 });
-describe('deleted file partitioning', () => {
-    it('identifies files in changedPaths but missing from allFiles as deleted', () => {
-        const changedPaths = ['src/a.ts', 'src/b.ts', 'src/deleted.ts'];
-        const allFileSet = new Set(['src/a.ts', 'src/b.ts']);
-        const deletedPaths = changedPaths.filter((p) => !allFileSet.has(p));
-        expect(deletedPaths).toEqual(['src/deleted.ts']);
-    });
-    it('returns empty when all changed files still exist', () => {
-        const changedPaths = ['src/a.ts'];
-        const allFileSet = new Set(['src/a.ts', 'src/b.ts']);
-        const deletedPaths = changedPaths.filter((p) => !allFileSet.has(p));
-        expect(deletedPaths).toEqual([]);
-    });
-    it('handles renamed files (old path deleted, new path exists)', () => {
-        const changedPaths = ['src/old-name.ts', 'src/new-name.ts'];
-        const allFileSet = new Set(['src/new-name.ts']);
-        const filesToProcess = changedPaths.filter((p) => allFileSet.has(p));
-        const deletedPaths = changedPaths.filter((p) => !allFileSet.has(p));
-        expect(filesToProcess).toEqual(['src/new-name.ts']);
-        expect(deletedPaths).toEqual(['src/old-name.ts']);
+describe('orphan reconciliation (computeOrphanPaths)', () => {
+    it('flags an indexed path absent from the working tree as an orphan', () => {
+        expect(computeOrphanPaths(['src/a.ts', 'src/gone.ts'], ['src/a.ts'])).toEqual(['src/gone.ts']);
+    });
+    it('returns no orphans when every indexed path is still live', () => {
+        expect(computeOrphanPaths(['src/a.ts', 'src/b.ts'], ['src/a.ts', 'src/b.ts'])).toEqual([]);
+    });
+    it('W1: a live file stored with backslashes is NOT orphaned by its forward-slash live path', () => {
+        // Legacy/raw stored separator vs normalized resolved path — must not false-purge.
+        expect(computeOrphanPaths(['src\\live.ts'], ['src/live.ts'])).toEqual([]);
+    });
+    it('W1: an orphaned backslash path is returned RAW so deleteByFile matches the stored literal', () => {
+        expect(computeOrphanPaths(['src\\deleted.ts'], ['src/other.ts'])).toEqual(['src\\deleted.ts']);
+    });
+    it('purges a de-targeted / newly-ignored file that left allFiles even though it exists on disk', () => {
+        expect(computeOrphanPaths(['src/foo.ts'], [])).toEqual(['src/foo.ts']);
+    });
+    it('rename-into-ignored (#624): the old indexed path is orphaned when neither old nor new is live', () => {
+        expect(computeOrphanPaths(['proposals/active/296.md'], ['proposals/other.md'])).toEqual([
+            'proposals/active/296.md',
+        ]);
+    });
+    it('W2: independent of the diff window — an orphan is found from indexed-vs-live alone', () => {
+        // The inputs are the indexed set and the working tree, never changedPaths,
+        // so an empty diff window cannot hide an orphan.
+        expect(computeOrphanPaths(['src/orphan.ts'], ['src/kept.ts'])).toEqual(['src/orphan.ts']);
     });
 });
 describe('runSync embedding guard', () => {

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1	+ 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package/dist/store/lance-store.d.ts CHANGED Viewed

@@ -166,5 +166,16 @@ export declare class LanceStore {
         rowCount: number;
         lastSynced: string;
     }[]>;
+    /**
+     * Distinct raw `filePath` values currently in the store — the set of source
+     * files with at least one chunk. Returns paths AS STORED (NOT normalized),
+     * because callers purge via `deleteByFile`, which matches the stored literal;
+     * separator normalization for comparison is the caller's job
+     * (mmnto-ai/totem#2151 W1). Bounded `select(['filePath'])` projection — never
+     * pulls vectors or chunk bodies into memory, but reads O(chunks) rows and
+     * dedups in JS (same shape as `manifestDocuments`); a DB-level DISTINCT is
+     * tracked in mmnto-ai/totem#2175 for large stores.
+     */
+    getDistinctPaths(): Promise<string[]>;
 }
 //# sourceMappingURL=lance-store.d.ts.map

package/dist/store/lance-store.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/store/lance-store.js CHANGED Viewed

@@ -459,5 +459,35 @@ export class LanceStore {
             closeReadSnapshot(snapshot.db, this.onWarn);
         }
     }
+    /**
+     * Distinct raw `filePath` values currently in the store — the set of source
+     * files with at least one chunk. Returns paths AS STORED (NOT normalized),
+     * because callers purge via `deleteByFile`, which matches the stored literal;
+     * separator normalization for comparison is the caller's job
+     * (mmnto-ai/totem#2151 W1). Bounded `select(['filePath'])` projection — never
+     * pulls vectors or chunk bodies into memory, but reads O(chunks) rows and
+     * dedups in JS (same shape as `manifestDocuments`); a DB-level DISTINCT is
+     * tracked in mmnto-ai/totem#2175 for large stores.
+     */
+    async getDistinctPaths() {
+        if (!this.table)
+            return [];
+        const snapshot = await this.openReadSnapshot();
+        try {
+            if (!snapshot.table)
+                return [];
+            const rows = await snapshot.table.query().select(['filePath']).toArray();
+            const paths = new Set();
+            for (const r of rows) {
+                const p = r['filePath'];
+                if (typeof p === 'string')
+                    paths.add(p);
+            }
+            return [...paths];
+        }
+        finally {
+            closeReadSnapshot(snapshot.db, this.onWarn);
+        }
+    }
 }
 //# sourceMappingURL=lance-store.js.map

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package/dist/store/lance-store.test.js CHANGED Viewed

@@ -102,6 +102,26 @@ describe('LanceStore', () => {
             expect(await store.count()).toBe(2);
         });
     });
+    describe('getDistinctPaths', () => {
+        it('returns one entry per distinct filePath, deduped', async () => {
+            await store.insert([
+                makeChunk({ filePath: 'src/a.ts', content: 'a1' }),
+                makeChunk({ filePath: 'src/a.ts', content: 'a2', label: 'fn b' }),
+                makeChunk({ filePath: 'src/b.ts', content: 'b1' }),
+            ]);
+            expect((await store.getDistinctPaths()).sort()).toEqual(['src/a.ts', 'src/b.ts']);
+        });
+        it('returns [] for an empty store', async () => {
+            expect(await store.getDistinctPaths()).toEqual([]);
+        });
+        it('preserves the raw stored path (no normalization) and round-trips through deleteByFile (#2151 W1)', async () => {
+            await store.insert([makeChunk({ filePath: 'src\\legacy.ts', content: 'legacy' })]);
+            expect(await store.getDistinctPaths()).toEqual(['src\\legacy.ts']);
+            // The raw backslash path must match the stored literal on delete.
+            await store.deleteByFile('src\\legacy.ts');
+            expect(await store.getDistinctPaths()).toEqual([]);
+        });
+    });
     describe('deleteByFile', () => {
         it('deletes chunks for a specific file', async () => {
             await store.insert([

package/dist/store/lance-store.test.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@mmnto/totem",
-  "version": "1.63.0",
+  "version": "1.64.0",
   "description": "Persistent memory and context layer for AI agents",
   "type": "module",
   "engines": {