@mmnto/cli 1.15.1 → 1.15.3

package/dist/commands/lesson-archive.test.js

@@ -0,0 +1,192 @@
+import * as fs from 'node:fs';
+import * as os from 'node:os';
+import * as path from 'node:path';
+import { afterEach, beforeEach, describe, expect, it } from 'vitest';
+import { generateOutputHash, readCompileManifest } from '@mmnto/totem';
+import { cleanTmpDir } from '../test-utils.js';
+import { lessonArchiveCommand } from './lesson.js';
+// ─── Helpers ─────────────────────────────────────────
+//
+// Exercise `totem lesson archive <hash> [--reason <string>]` — the atomic
+// archive verb from mmnto-ai/totem#1587 Task 3. The command mirrors
+// `rulePromoteCommand` (rule.ts:300-394) in shape: preflight manifest read,
+// atomic tmp+rename write of rules.json, refresh manifest output_hash.
+// Idempotent on rerun: archivedReason refreshes, archivedAt is preserved
+// across invocations.
+function makeTmpDir() {
+    return fs.mkdtempSync(path.join(os.tmpdir(), 'totem-lesson-archive-'));
+}
+function setupWorkspace(tmpDir, rules) {
+    fs.writeFileSync(path.join(tmpDir, 'totem.config.ts'), [
+        'export default {',
+        '  targets: [{ glob: "**/*.ts", type: "code", strategy: "typescript-ast" }],',
+        '  totemDir: ".totem",',
+        '};',
+        '',
+    ].join('\n'), 'utf-8');
+    const totemDir = path.join(tmpDir, '.totem');
+    fs.mkdirSync(totemDir, { recursive: true });
+    const rulesPath = path.join(totemDir, 'compiled-rules.json');
+    const now = '2026-04-22T00:00:00Z';
+    fs.writeFileSync(rulesPath, JSON.stringify({
+        version: 1,
+        rules: rules.map((r) => ({
+            lessonHash: r.lessonHash,
+            lessonHeading: r.lessonHeading,
+            pattern: 'dummy-never-matches',
+            message: r.lessonHeading,
+            engine: 'regex',
+            severity: 'warning',
+            compiledAt: now,
+            ...(r.status ? { status: r.status } : {}),
+            ...(r.archivedReason ? { archivedReason: r.archivedReason } : {}),
+            ...(r.archivedAt ? { archivedAt: r.archivedAt } : {}),
+        })),
+        nonCompilable: [],
+    }, null, 2) + '\n', 'utf-8');
+    const manifestPath = path.join(totemDir, 'compile-manifest.json');
+    fs.writeFileSync(manifestPath, JSON.stringify({
+        compiled_at: now,
+        model: 'test-model',
+        input_hash: '0000000000000000000000000000000000000000000000000000000000000000',
+        output_hash: generateOutputHash(rulesPath),
+        rule_count: rules.length,
+    }, null, 2) + '\n', 'utf-8');
+}
+describe('lessonArchiveCommand (#1587)', () => {
+    let tmpDir;
+    let originalCwd;
+    beforeEach(() => {
+        tmpDir = makeTmpDir();
+        originalCwd = process.cwd();
+        process.chdir(tmpDir);
+    });
+    afterEach(() => {
+        process.chdir(originalCwd);
+        cleanTmpDir(tmpDir);
+    });
+    it('archives the target rule, refreshes manifest output_hash, and stamps archivedAt', async () => {
+        setupWorkspace(tmpDir, [{ lessonHash: 'abc123def456abcd', lessonHeading: 'Use err in catch' }]);
+        const totemDir = path.join(tmpDir, '.totem');
+        const rulesPath = path.join(totemDir, 'compiled-rules.json');
+        const manifestPath = path.join(totemDir, 'compile-manifest.json');
+        await lessonArchiveCommand('abc123def456abcd', { reason: 'Over-broad in test contexts' });
+        const rulesAfter = JSON.parse(fs.readFileSync(rulesPath, 'utf-8'));
+        const rule = rulesAfter.rules.find((r) => r.lessonHash === 'abc123def456abcd');
+        expect(rule.status).toBe('archived');
+        expect(rule.archivedReason).toBe('Over-broad in test contexts');
+        expect(typeof rule.archivedAt).toBe('string');
+        expect(rule.archivedAt).toMatch(/^\d{4}-\d{2}-\d{2}T/);
+        const manifestAfter = readCompileManifest(manifestPath);
+        expect(manifestAfter.output_hash).toBe(generateOutputHash(rulesPath));
+    });
+    it('is idempotent on rerun: archivedReason refreshes, archivedAt is preserved', async () => {
+        const originalArchivedAt = '2026-04-15T00:00:00.000Z';
+        setupWorkspace(tmpDir, [
+            {
+                lessonHash: 'abc123def456abcd',
+                lessonHeading: 'Use err in catch',
+                status: 'archived',
+                archivedReason: 'Original reason',
+                archivedAt: originalArchivedAt,
+            },
+        ]);
+        const totemDir = path.join(tmpDir, '.totem');
+        const rulesPath = path.join(totemDir, 'compiled-rules.json');
+        await lessonArchiveCommand('abc123def456abcd', { reason: 'Updated reason' });
+        const rulesAfter = JSON.parse(fs.readFileSync(rulesPath, 'utf-8'));
+        const rule = rulesAfter.rules.find((r) => r.lessonHash === 'abc123def456abcd');
+        expect(rule.status).toBe('archived');
+        expect(rule.archivedReason).toBe('Updated reason');
+        expect(rule.archivedAt).toBe(originalArchivedAt);
+    });
+    it('accepts a hash prefix and resolves unambiguously', async () => {
+        setupWorkspace(tmpDir, [
+            { lessonHash: 'abc123def456abcd', lessonHeading: 'Rule A' },
+            { lessonHash: 'def789ghi012efgh', lessonHeading: 'Rule B' },
+        ]);
+        const totemDir = path.join(tmpDir, '.totem');
+        const rulesPath = path.join(totemDir, 'compiled-rules.json');
+        await lessonArchiveCommand('abc12', { reason: 'prefix match' });
+        const rulesAfter = JSON.parse(fs.readFileSync(rulesPath, 'utf-8'));
+        const ruleA = rulesAfter.rules.find((r) => r.lessonHash === 'abc123def456abcd');
+        const ruleB = rulesAfter.rules.find((r) => r.lessonHash === 'def789ghi012efgh');
+        expect(ruleA.status).toBe('archived');
+        expect(ruleB.status).toBeUndefined();
+    });
+    it('fails fast on unknown hash without mutating any files', async () => {
+        setupWorkspace(tmpDir, [{ lessonHash: 'abc123def456abcd', lessonHeading: 'Use err in catch' }]);
+        const totemDir = path.join(tmpDir, '.totem');
+        const rulesPath = path.join(totemDir, 'compiled-rules.json');
+        const manifestPath = path.join(totemDir, 'compile-manifest.json');
+        const rulesBefore = fs.readFileSync(rulesPath, 'utf-8');
+        const manifestBefore = fs.readFileSync(manifestPath, 'utf-8');
+        await lessonArchiveCommand('ffff', { reason: 'not matching anything' });
+        expect(process.exitCode).toBe(1);
+        process.exitCode = 0;
+        expect(fs.readFileSync(rulesPath, 'utf-8')).toBe(rulesBefore);
+        expect(fs.readFileSync(manifestPath, 'utf-8')).toBe(manifestBefore);
+    });
+    it('fails fast on ambiguous prefix without mutating any files', async () => {
+        setupWorkspace(tmpDir, [
+            { lessonHash: 'abc123def456abcd', lessonHeading: 'Rule A' },
+            { lessonHash: 'abc999ghi012efgh', lessonHeading: 'Rule B' },
+        ]);
+        const totemDir = path.join(tmpDir, '.totem');
+        const rulesPath = path.join(totemDir, 'compiled-rules.json');
+        const manifestPath = path.join(totemDir, 'compile-manifest.json');
+        const rulesBefore = fs.readFileSync(rulesPath, 'utf-8');
+        const manifestBefore = fs.readFileSync(manifestPath, 'utf-8');
+        await lessonArchiveCommand('abc', { reason: 'ambiguous' });
+        expect(process.exitCode).toBe(1);
+        process.exitCode = 0;
+        expect(fs.readFileSync(rulesPath, 'utf-8')).toBe(rulesBefore);
+        expect(fs.readFileSync(manifestPath, 'utf-8')).toBe(manifestBefore);
+    });
+    it('fails before mutating compiled-rules.json when compile-manifest.json is corrupt', async () => {
+        // Load-bearing atomicity contract (CR finding on PR #1629): the
+        // preflight manifest read must fail out BEFORE any write to
+        // compiled-rules.json. A corrupt manifest must not leave the rules
+        // file half-archived.
+        setupWorkspace(tmpDir, [{ lessonHash: 'abc123def456abcd', lessonHeading: 'Use err in catch' }]);
+        const totemDir = path.join(tmpDir, '.totem');
+        const rulesPath = path.join(totemDir, 'compiled-rules.json');
+        const manifestPath = path.join(totemDir, 'compile-manifest.json');
+        fs.writeFileSync(manifestPath, '{ this is: not valid json }', 'utf-8');
+        const rulesBefore = fs.readFileSync(rulesPath, 'utf-8'); // totem-ignore — test-fixture read, not static-analysis path
+        await expect(lessonArchiveCommand('abc123def456abcd', { reason: 'should not apply' })).rejects.toMatchObject({ code: 'PARSE_FAILED' });
+        // compiled-rules.json must be untouched.
+        expect(fs.readFileSync(rulesPath, 'utf-8')).toBe(rulesBefore); // totem-ignore — test-fixture read, not static-analysis path
+    });
+    it('fails before mutating compiled-rules.json when compiled-rules.json itself has duplicate hashes', async () => {
+        // Data-corruption surface (CR finding on PR mmnto-ai/totem#1629): duplicate full
+        // hashes are not prefix ambiguity; fail fast with a distinct signal.
+        setupWorkspace(tmpDir, [{ lessonHash: 'abc123def456abcd', lessonHeading: 'Rule A' }]);
+        const totemDir = path.join(tmpDir, '.totem');
+        const rulesPath = path.join(totemDir, 'compiled-rules.json');
+        const manifestPath = path.join(totemDir, 'compile-manifest.json');
+        // Rewrite the rules file with two entries carrying the SAME lessonHash.
+        const rulesJson = JSON.parse(fs.readFileSync(rulesPath, 'utf-8')); // totem-ignore — test-fixture read, not static-analysis path
+        rulesJson.rules.push({ ...rulesJson.rules[0], lessonHeading: 'Rule A duplicate' });
+        fs.writeFileSync(rulesPath, JSON.stringify(rulesJson, null, 2) + '\n', 'utf-8');
+        const rulesBefore = fs.readFileSync(rulesPath, 'utf-8'); // totem-ignore — test-fixture read, not static-analysis path
+        const manifestBefore = fs.readFileSync(manifestPath, 'utf-8'); // totem-ignore — test-fixture read, not static-analysis path
+        await lessonArchiveCommand('abc123def456abcd', { reason: 'duplicate' });
+        expect(process.exitCode).toBe(1);
+        process.exitCode = 0;
+        expect(fs.readFileSync(rulesPath, 'utf-8')).toBe(rulesBefore);
+        expect(fs.readFileSync(manifestPath, 'utf-8')).toBe(manifestBefore);
+    });
+    it('uses a default reason when --reason is omitted', async () => {
+        setupWorkspace(tmpDir, [{ lessonHash: 'abc123def456abcd', lessonHeading: 'Use err in catch' }]);
+        const totemDir = path.join(tmpDir, '.totem');
+        const rulesPath = path.join(totemDir, 'compiled-rules.json');
+        await lessonArchiveCommand('abc123def456abcd', {});
+        const rulesAfter = JSON.parse(fs.readFileSync(rulesPath, 'utf-8'));
+        const rule = rulesAfter.rules.find((r) => r.lessonHash === 'abc123def456abcd');
+        expect(rule.status).toBe('archived');
+        expect(typeof rule.archivedReason).toBe('string');
+        expect(rule.archivedReason.length).toBeGreaterThan(0);
+    });
+});
+//# sourceMappingURL=lesson-archive.test.js.map

package/dist/commands/lesson-archive.test.js.map

@@ -0,0 +1 @@
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package/dist/commands/lesson.d.ts

@@ -1,3 +1,26 @@
 export declare function lessonListCommand(): Promise<void>;
 export declare function lessonAddCommand(text: string): Promise<void>;
+/**
+ * Archive a compiled rule by flipping its `status` to `'archived'`, setting
+ * the `archivedReason`, stamping `archivedAt` on first transition, and
+ * refreshing the compile manifest so `totem verify-manifest` passes on the
+ * next push (mmnto-ai/totem#1587).
+ *
+ * Atomic surface matches `rulePromoteCommand` (rule.ts:300-394): preflight
+ * the manifest read BEFORE mutating compiled-rules.json so a missing or
+ * corrupt manifest fails loud without leaving the rules file half-written.
+ * Tmp-file + rename on the rules write prevents torn writes if the process
+ * crashes mid-save.
+ *
+ * Idempotent on rerun. First archive transition owns `archivedAt`;
+ * subsequent invocations refresh `archivedReason` only. Matches the
+ * canonical archive-script pattern standardized in mmnto-ai/totem#1625.
+ *
+ * Supersedes the hand-rolled `scripts/archive-bad-postmerge-*.cjs` pattern
+ * for postmerge curation; the `/postmerge` skill calls this command
+ * directly after Task 4 of mmnto-ai/totem#1587 ships.
+ */
+export declare function lessonArchiveCommand(id: string, opts: {
+    reason?: string;
+}): Promise<void>;
 //# sourceMappingURL=lesson.d.ts.map

package/dist/commands/lesson.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"lesson.d.ts","sourceRoot":"","sources":["../../src/commands/lesson.ts"],"names":[],"mappings":"AAUA,wBAAsB,iBAAiB,IAAI,OAAO,CAAC,IAAI,CAAC,CAuCvD;AAED,wBAAsB,gBAAgB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CA0DlE"}
+{"version":3,"file":"lesson.d.ts","sourceRoot":"","sources":["../../src/commands/lesson.ts"],"names":[],"mappings":"AAYA,wBAAsB,iBAAiB,IAAI,OAAO,CAAC,IAAI,CAAC,CAuCvD;AAED,wBAAsB,gBAAgB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC,CA0DlE;AAED;;;;;;;;;;;;;;;;;;;GAmBG;AACH,wBAAsB,oBAAoB,CAAC,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE;IAAE,MAAM,CAAC,EAAE,MAAM,CAAA;CAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CAuI/F"}

package/dist/commands/lesson.js

@@ -87,4 +87,128 @@ export async function lessonAddCommand(text) {
         log.warn(TAG, `Failed to trigger background sync: ${message}`);
     }
 }
+/**
+ * Archive a compiled rule by flipping its `status` to `'archived'`, setting
+ * the `archivedReason`, stamping `archivedAt` on first transition, and
+ * refreshing the compile manifest so `totem verify-manifest` passes on the
+ * next push (mmnto-ai/totem#1587).
+ *
+ * Atomic surface matches `rulePromoteCommand` (rule.ts:300-394): preflight
+ * the manifest read BEFORE mutating compiled-rules.json so a missing or
+ * corrupt manifest fails loud without leaving the rules file half-written.
+ * Tmp-file + rename on the rules write prevents torn writes if the process
+ * crashes mid-save.
+ *
+ * Idempotent on rerun. First archive transition owns `archivedAt`;
+ * subsequent invocations refresh `archivedReason` only. Matches the
+ * canonical archive-script pattern standardized in mmnto-ai/totem#1625.
+ *
+ * Supersedes the hand-rolled `scripts/archive-bad-postmerge-*.cjs` pattern
+ * for postmerge curation; the `/postmerge` skill calls this command
+ * directly after Task 4 of mmnto-ai/totem#1587 ships.
+ */
+export async function lessonArchiveCommand(id, opts) {
+    const fs = await import('node:fs');
+    const path = await import('node:path');
+    const { log, bold } = await import('../ui.js');
+    const { exportLessons, generateOutputHash, hashLesson, loadCompiledRulesFile, readAllLessons, readCompileManifest, writeCompileManifest, } = await import('@mmnto/totem');
+    const { loadConfig, resolveConfigPath } = await import('../utils.js');
+    const cwd = process.cwd();
+    const configPath = resolveConfigPath(cwd);
+    const config = await loadConfig(configPath);
+    const totemDir = path.join(cwd, config.totemDir);
+    const rulesPath = path.join(totemDir, 'compiled-rules.json');
+    const manifestPath = path.join(totemDir, 'compile-manifest.json');
+    if (!fs.existsSync(rulesPath)) {
+        log.error('Totem Error', `No compiled-rules.json at ${rulesPath}. Run 'totem lesson compile' first.`);
+        process.exitCode = 1;
+        return;
+    }
+    const rulesFile = loadCompiledRulesFile(rulesPath);
+    // Pre-index pass with duplicate-collision abort (CR finding on PR mmnto-ai/totem#1629).
+    // Duplicate full hashes in compiled-rules.json are data corruption, not
+    // prefix ambiguity; the "provide more characters to disambiguate" hint
+    // is impossible to satisfy when the full hash itself collides. Surface
+    // this as a distinct failure mode before prefix resolution runs.
+    const byHash = new Map();
+    const duplicates = new Set();
+    for (const r of rulesFile.rules) {
+        const key = r.lessonHash.toLowerCase();
+        if (byHash.has(key)) {
+            duplicates.add(key);
+        }
+        else {
+            byHash.set(key, r);
+        }
+    }
+    if (duplicates.size > 0) {
+        log.error('Totem Error', `compiled-rules.json contains duplicate lessonHash entries: ${[...duplicates].join(', ')}`);
+        log.dim(TAG, 'This is data corruption. Run `totem verify-manifest` and investigate.');
+        process.exitCode = 1;
+        return;
+    }
+    const matches = rulesFile.rules.filter((r) => r.lessonHash.toLowerCase().startsWith(id.toLowerCase()));
+    if (matches.length === 0) {
+        log.error('Totem Error', `No rule found matching '${id}'`);
+        process.exitCode = 1;
+        return;
+    }
+    if (matches.length > 1) {
+        log.warn(TAG, `Ambiguous prefix '${id}' matches ${matches.length} rules:`);
+        for (const m of matches) {
+            log.info(TAG, `  ${bold(m.lessonHash)} — ${m.lessonHeading}`);
+        }
+        log.dim(TAG, 'Provide more characters to disambiguate.');
+        process.exitCode = 1;
+        return;
+    }
+    const rule = matches[0];
+    // Preflight the manifest read BEFORE mutating rules.json (mmnto-ai/
+    // totem#1601 CR pattern on rulePromoteCommand). Missing / corrupt /
+    // unwritable manifest must fail out before any side effects on the
+    // rules file.
+    const compileManifest = readCompileManifest(manifestPath);
+    // Idempotent lifecycle transition: first archive owns archivedAt;
+    // reruns refresh archivedReason but leave archivedAt untouched. Matches
+    // the canonical archive-script shape standardized in mmnto-ai/totem#1625.
+    const wasAlreadyArchived = rule.status === 'archived';
+    rule.status = 'archived';
+    rule.archivedReason = opts.reason ?? 'Archived via `totem lesson archive`';
+    if (!rule.archivedAt) {
+        rule.archivedAt = new Date().toISOString();
+    }
+    // Atomic tmp+rename write matching the canonical on-disk format used
+    // by compile-lesson.ts, rule-mutator.ts, and rulePromoteCommand.
+    const tmpPath = `${rulesPath}.tmp`;
+    fs.writeFileSync(tmpPath, JSON.stringify(rulesFile, null, 2) + '\n', { encoding: 'utf-8' });
+    fs.renameSync(tmpPath, rulesPath);
+    // Refresh the manifest's output_hash so verify-manifest passes on the
+    // next push. Uses the compileManifest loaded above (preflighted) so the
+    // mutation order is: read-manifest -> mutate-rules -> write-rules ->
+    // update-manifest.
+    compileManifest.output_hash = generateOutputHash(rulesPath);
+    compileManifest.compiled_at = new Date().toISOString();
+    writeCompileManifest(manifestPath, compileManifest);
+    // Regenerate exports so the archived rule gets filtered out of
+    // copilot-instructions.md and junie rules.md (mirrors the compile.ts
+    // mmnto-ai/totem#1345 export-path filter). No-op if no exports are
+    // configured.
+    if (config.exports && Object.keys(config.exports).length > 0) {
+        const lessons = readAllLessons(totemDir);
+        const archivedHashes = new Set(rulesFile.rules
+            .filter((r) => r.status === 'archived')
+            .map((r) => r.lessonHash.toLowerCase()));
+        const lessonsForExport = archivedHashes.size === 0
+            ? lessons
+            : lessons.filter((l) => !archivedHashes.has(hashLesson(l.heading, l.body).toLowerCase()));
+        for (const [name, filePath] of Object.entries(config.exports)) {
+            const absPath = path.join(cwd, filePath);
+            exportLessons(lessonsForExport, absPath);
+            log.dim(TAG, `Exported ${lessonsForExport.length} rules to ${filePath} (${name})`);
+        }
+    }
+    const verb = wasAlreadyArchived ? 'Refreshed archive' : 'Archived';
+    log.success(TAG, `${verb} for rule ${bold(rule.lessonHash)} — ${rule.lessonHeading}`);
+    log.dim(TAG, 'Manifest refreshed. `totem verify-manifest` should pass.');
+}
 //# sourceMappingURL=lesson.js.map

package/dist/commands/lesson.js.map

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package/dist/commands/lint.d.ts

@@ -1,3 +1,4 @@
+import type { TimeoutMode } from '@mmnto/totem';
 import type { ShieldFormat } from './shield.js';
 export interface LintOptions {
     out?: string;
@@ -5,6 +6,13 @@ export interface LintOptions {
     staged?: boolean;
     /** PR number to post a comment on, or `true` to auto-infer from GitHub Actions env */
     prComment?: number | true;
+    /**
+     * Bounded regex execution timeout mode (mmnto-ai/totem#1641). `strict`
+     * (default) surfaces pattern-evaluation timeouts as lint errors.
+     * `lenient` skips the timing-out rule-file pair with a warning and
+     * does not contribute to the exit code.
+     */
+    timeoutMode?: TimeoutMode;
 }
 export declare function lintCommand(options: LintOptions): Promise<void>;
 //# sourceMappingURL=lint.d.ts.map

package/dist/commands/lint.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"lint.d.ts","sourceRoot":"","sources":["../../src/commands/lint.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAIhD,MAAM,WAAW,WAAW;IAC1B,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,MAAM,CAAC,EAAE,YAAY,CAAC;IACtB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,sFAAsF;IACtF,SAAS,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;CAC3B;AAID,wBAAsB,WAAW,CAAC,OAAO,EAAE,WAAW,GAAG,OAAO,CAAC,IAAI,CAAC,CAmGrE"}
+{"version":3,"file":"lint.d.ts","sourceRoot":"","sources":["../../src/commands/lint.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,cAAc,CAAC;AAEhD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAIhD,MAAM,WAAW,WAAW;IAC1B,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,MAAM,CAAC,EAAE,YAAY,CAAC;IACtB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,sFAAsF;IACtF,SAAS,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAC1B;;;;;OAKG;IACH,WAAW,CAAC,EAAE,WAAW,CAAC;CAC3B;AAID,wBAAsB,WAAW,CAAC,OAAO,EAAE,WAAW,GAAG,OAAO,CAAC,IAAI,CAAC,CAsHrE"}

package/dist/commands/lint.js

@@ -39,8 +39,9 @@ export async function lintCommand(options) {
         return;
     const allIgnore = [...config.ignorePatterns, ...(config.shieldIgnorePatterns ?? [])];
     const exportPaths = config.exports ? Object.values(config.exports) : undefined;
+    const timeoutMode = options.timeoutMode ?? 'strict';
     const startTime = Date.now();
-    const { violations, rules } = await runCompiledRules({
+    const { violations, rules, regexTimeouts } = await runCompiledRules({
         diff: result.diff,
         cwd,
         totemDir: config.totemDir,
@@ -51,7 +52,19 @@ export async function lintCommand(options) {
         tag: TAG,
         configRoot,
         isStaged: !!options.staged,
+        regexTimeoutMode: timeoutMode,
     });
+    // mmnto-ai/totem#1641: strict mode surfaces any regex-evaluation timeout
+    // as a non-zero exit. Lenient mode logged warnings inside runCompiledRules
+    // and excludes timeouts from the exit code. The sub-shell CLI layer
+    // throws a TotemError so the existing exit-code wiring picks it up.
+    if (timeoutMode === 'strict' && regexTimeouts.length > 0) {
+        const { TotemError } = await import('@mmnto/totem');
+        const summary = regexTimeouts
+            .map((t) => `${t.ruleHash} on ${t.file} (${t.elapsedMs}ms)`)
+            .join('; ');
+        throw new TotemError('CHECK_FAILED', `Regex evaluation timed out on ${regexTimeouts.length} rule-file pair(s): ${summary}`, "Run with '--timeout-mode lenient' to skip timing-out rules, archive the offending rule via 'totem doctor --pr', or increase the timeout budget.");
+    }
     // Post PR comment if requested (zero-API-keys invariant: only behind --pr-comment flag)
     if (options.prComment == null)
         return;

package/dist/commands/lint.js.map

@@ -1 +1 @@
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package/dist/commands/lint.test.js

@@ -24,7 +24,13 @@ vi.mock('../git.js', () => ({
 }));
 // ─── Mock run-compiled-rules to avoid needing real rules ─
 vi.mock('./run-compiled-rules.js', () => ({
-    runCompiledRules: async () => ({ violations: [], rules: [], output: '' }),
+    runCompiledRules: async () => ({
+        violations: [],
+        rules: [],
+        output: '',
+        findings: [],
+        regexTimeouts: [],
+    }),
 }));
 // ─── Helpers ────────────────────────────────────────────
 function makeTmpDir() {
@@ -105,4 +111,68 @@ describe('lintCommand staleness check', () => {
         await expect(lintCommand({})).resolves.toBeUndefined();
     });
 });
+// ─── Regex timeout strict/lenient mode (mmnto-ai/totem#1641) ────
+describe('lintCommand regex timeout handling', () => {
+    let tmpDir;
+    let originalCwd;
+    beforeEach(() => {
+        tmpDir = makeTmpDir();
+        originalCwd = process.cwd();
+        process.chdir(tmpDir);
+        fs.writeFileSync(path.join(tmpDir, 'totem.config.ts'), 'export default {};', 'utf-8');
+        const { lessonsDir, rulesPath, manifestPath } = scaffold(tmpDir);
+        writeValidManifest(manifestPath, lessonsDir, rulesPath);
+    });
+    afterEach(() => {
+        process.chdir(originalCwd);
+        cleanTmpDir(tmpDir);
+        vi.clearAllMocks();
+        vi.resetModules();
+    });
+    it('throws TotemError in strict mode when regex timeouts are present', async () => {
+        vi.doMock('./run-compiled-rules.js', () => ({
+            runCompiledRules: async () => ({
+                violations: [],
+                rules: [],
+                output: '',
+                findings: [],
+                regexTimeouts: [
+                    { ruleHash: 'hungRule', file: 'app.ts', elapsedMs: 120, mode: 'strict' },
+                ],
+            }),
+        }));
+        const { lintCommand } = await import('./lint.js');
+        await expect(lintCommand({ timeoutMode: 'strict' })).rejects.toThrow(/Regex evaluation timed out/);
+    });
+    it('does not throw in lenient mode even when regex timeouts are present', async () => {
+        vi.doMock('./run-compiled-rules.js', () => ({
+            runCompiledRules: async () => ({
+                violations: [],
+                rules: [],
+                output: '',
+                findings: [],
+                regexTimeouts: [
+                    { ruleHash: 'hungRule', file: 'app.ts', elapsedMs: 120, mode: 'lenient' },
+                ],
+            }),
+        }));
+        const { lintCommand } = await import('./lint.js');
+        await expect(lintCommand({ timeoutMode: 'lenient' })).resolves.toBeUndefined();
+    });
+    it('does not throw in strict mode when regex timeouts array is empty', async () => {
+        // Locks in that the strict-mode throw fires ONLY on non-empty timeouts,
+        // not on every strict-mode run.
+        vi.doMock('./run-compiled-rules.js', () => ({
+            runCompiledRules: async () => ({
+                violations: [],
+                rules: [],
+                output: '',
+                findings: [],
+                regexTimeouts: [],
+            }),
+        }));
+        const { lintCommand } = await import('./lint.js');
+        await expect(lintCommand({ timeoutMode: 'strict' })).resolves.toBeUndefined();
+    });
+});
 //# sourceMappingURL=lint.test.js.map

package/dist/commands/lint.test.js.map

@@ -1 +1 @@
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package/dist/commands/run-compiled-rules.d.ts

@@ -1,4 +1,4 @@
-import type { CompiledRule, TotemFinding, Violation } from '@mmnto/totem';
+import type { CompiledRule, RuleTimeoutOutcome, TimeoutMode, TotemFinding, Violation } from '@mmnto/totem';
 import type { ShieldFormat } from './shield.js';
 export interface RunCompiledRulesOptions {
     diff: string;
@@ -13,6 +13,13 @@ export interface RunCompiledRulesOptions {
     configRoot?: string;
     /** True if we are linting staged changes only */
     isStaged?: boolean;
+    /**
+     * Bounded regex execution timeout mode (mmnto-ai/totem#1641). `strict`
+     * (default) surfaces regex timeouts as lint errors that contribute to
+     * the non-zero exit code. `lenient` skips the timing-out rule-file pair
+     * with a visible warning and excludes timeouts from the exit code.
+     */
+    regexTimeoutMode?: TimeoutMode;
 }
 export interface RunCompiledRulesResult {
     violations: Violation[];
@@ -20,6 +27,13 @@ export interface RunCompiledRulesResult {
     findings: TotemFinding[];
     rules: CompiledRule[];
     output: string;
+    /**
+     * Any regex rule-file pairs that timed out during bounded evaluation
+     * (mmnto-ai/totem#1641). Empty on healthy runs. Strict mode expects the
+     * CLI caller to fail non-zero when non-empty; lenient mode emits
+     * warnings only.
+     */
+    regexTimeouts: RuleTimeoutOutcome[];
 }
 /**
  * Compiled-rules execution engine used by `totem lint`. Loads rules, extracts additions, enriches