@mmnto/cli 1.101.2 → 1.103.0

package/dist/commands/init-detect.js

@@ -263,7 +263,7 @@ export function detectOrchestrator(cwd) {
     if (cliExists('claude')) {
         return orchestratorResult({
             provider: 'shell',
-            command: 'claude -p {file} --model {model} --output-format json',
+            command: 'claude -p --model {model} < {file}',
             overrides: buildRoleOverrides(INIT_ORCHESTRATOR_MODELS.claudeCli),
         });
     }

package/dist/commands/init-detect.js.map

@@ -1 +1 @@
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package/dist/commands/init-detect.test.js

@@ -93,7 +93,8 @@ describe('detectOrchestrator emission shape (Tenet-16 corollary)', () => {
         stubCliOnPath('claude');
         const result = detectOrchestrator(tmpDir);
         expect(result.config['provider']).toBe('shell');
-        expect(result.config['command']).toContain('claude -p {file}');
+        expect(result.config['command']).toBe('claude -p --model {model} < {file}');
+        expect(result.config['command']).not.toContain('-p {file}');
         expect(result.config['overrides']).toEqual(Object.fromEntries(EXPECTED_ROLES.map((role) => [role, 'sonnet'])));
     });
     it('ollama branch emits gemma4 per-role', () => {

package/dist/commands/init-detect.test.js.map

@@ -1 +1 @@
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package/dist/commands/init-templates.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"init-templates.d.ts","sourceRoot":"","sources":["../../src/commands/init-templates.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,cAAc,CAAC;AAEjD,OAAO,KAAK,EAAE,YAAY,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAC;AAMpE,eAAO,MAAM,cAAc,IAAI,CAAC;AAChC,eAAO,MAAM,YAAY,kCAAkC,CAAC;AAC5D,eAAO,MAAM,UAAU,gCAAgC,CAAC;AACxD,eAAO,MAAM,iBAAiB,QAA0C,CAAC;AACzE,eAAO,MAAM,eAAe,6CAA6C,CAAC;AAE1E,eAAO,MAAM,eAAe,k+KA6C3B,CAAC;AAEF,eAAO,MAAM,iBAAiB,8BAA8B,CAAC;AAE7D;;;;;;;;;;;GAWG;AACH,eAAO,MAAM,cAAc,kCAAkC,CAAC;AAE9D;;;;;;;;;GASG;AACH,wBAAgB,eAAe,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,OAAO,CAIxE;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,OAAO,CAQ9F;AAgBD,eAAO,MAAM,qBAAqB,6CAA6C,CAAC;AAwBhF;;;;;;GAMG;AACH,eAAO,MAAM,oBAAoB,8BAA8B,CAAC;AAEhE,eAAO,MAAM,oBAAoB,k6CA+BhC,CAAC;AAEF,eAAO,MAAM,kBAAkB,QAwG9B,CAAC;AAEF,eAAO,MAAM,YAAY,4hBAUxB,CAAC;AAIF,eAAO,MAAM,kBAAkB,waAY9B,CAAC;AAEF,eAAO,MAAM,uBAAuB;;;;;;CAQnC,CAAC;AAyBF,eAAO,MAAM,qBAAqB,QAiHjC,CAAC;AAEF,eAAO,MAAM,2BAA2B;;;;;;CAQvC,CAAC;AA4BF,eAAO,MAAM,oBAAoB,qlLAmHhC,CAAC;AAEF,eAAO,MAAM,0BAA0B;;;;;;CAQtC,CAAC;AA8CF,eAAO,MAAM,mBAAmB,iwQA6K/B,CAAC;AAiBF,eAAO,MAAM,yBAAyB;;;;;;CAQrC,CAAC;AAaF,eAAO,MAAM,kBAAkB,uBAAuB,CAAC;AACvD,eAAO,MAAM,sBAAsB,4BAA4B,CAAC;AAoBhE,eAAO,MAAM,eAAe,w/GAsF3B,CAAC;AAqBF,MAAM,WAAW,kBAAkB;IACjC,qDAAqD;IACrD,GAAG,EAAE,MAAM,CAAC;IACZ,8FAA8F;IAC9F,OAAO,EAAE,MAAM,CAAC;IAChB,yDAAyD;IACzD,MAAM,EAAE,MAAM,CAAC;IACf,iEAAiE;IACjE,SAAS,EAAE,MAAM,CAAC;CACnB;AAED,eAAO,MAAM,qBAAqB,EAAE,aAAa,CAAC,kBAAkB,CAyCnE,CAAC;AAwBF,eAAO,MAAM,kBAAkB,+BAA+B,CAAC;AAC/D,eAAO,MAAM,gBAAgB,6BAA6B,CAAC;AAE3D,eAAO,MAAM,qBAAqB,QAwDjC,CAAC;AAEF,eAAO,MAAM,oBAAoB,63FAoBhC,CAAC;AAEF,eAAO,MAAM,0BAA0B,6uIA8EtC,CAAC;AAEF,eAAO,MAAM,yBAAyB,4+HAwCrC,CAAC;AAEF,eAAO,MAAM,yBAAyB;;;;;;;;;;;;EAK5B,CAAC;AAIX,wBAAsB,cAAc,CAClC,OAAO,EAAE,YAAY,EAAE,EACvB,aAAa,EAAE,aAAa,EAC5B,GAAG,EAAE,MAAM,GACV,OAAO,CAAC,MAAM,CAAC,CAyCjB;AAoDD;;GAEG;AACH,wBAAsB,kBAAkB,CACtC,OAAO,EAAE,YAAY,EAAE,EACvB,aAAa,EAAE,aAAa,EAC5B,GAAG,EAAE,MAAM,GACV,OAAO,CAAC,MAAM,CAAC,CAIjB;AAED;;GAEG;AACH,wBAAsB,kBAAkB,CACtC,OAAO,EAAE,YAAY,EAAE,EACvB,aAAa,EAAE,aAAa,EAC5B,GAAG,EAAE,MAAM,GACV,OAAO,CAAC,MAAM,CAAC,CAIjB;AAED;;GAEG;AACH,wBAAsB,uBAAuB,CAC3C,MAAM,EAAE,YAAY,EACpB,OAAO,EAAE,YAAY,EAAE,EACvB,aAAa,EAAE,aAAa,EAC5B,GAAG,EAAE,MAAM,GACV,OAAO,CAAC;IAAE,OAAO,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,CAAC,CAkBhD"}

package/dist/commands/init-templates.js

@@ -124,6 +124,24 @@ export function isBoundedOwnedFile(content, marker, endMarker) {
 // `owner/repo` qualifier and NOT followed by an alpha/dash character
 // (excludes anchor-style IDs like `#section-2`).
 export const BARE_REF_REGEX_SOURCE = '(?<!\\b[\\w-]+/[\\w-]+)#(\\d+)(?![-\\w])';
+// ─── Auto-close keyword regex (mmnto-ai/totem#1762) ──────────────────────
+//
+// The CANONICAL source is `@mmnto/totem`'s `AUTO_CLOSE_REGEX_SOURCE`
+// (packages/core/src/autoclose/matcher.ts) — the ONE shared evaluator that D1
+// (PR-time check) and D2 (post-merge reconciliation) consume. This is a LOCAL
+// MIRROR, not an independent copy: init-templates must NOT statically
+// value-import from the heavy core barrel (the cold-start rule,
+// mmnto-ai/totem#2339 — it pulls LanceDB into every `--help`), and these
+// template constants are evaluated at module top-level so a deferred
+// `await import()` is not possible. The mirror is drift-LOCKED by the
+// init.test.ts assertions that render the templates and assert each inlines
+// `JSON.stringify(<core AUTO_CLOSE_REGEX_SOURCE>)`; if this literal ever drifts
+// from core's, those tests fail. Update BOTH in the same change.
+const AUTO_CLOSE_REGEX_SOURCE = '\\b(?:closed|closes|close|fixed|fixes|fix|resolved|resolves|resolve)\\b' +
+    '(?:\\s*:\\s*|\\s+)' +
+    '(?:https?://github\\.com/([A-Za-z0-9._-]+/[A-Za-z0-9._-]+)/(?:issues|pull)/(\\d+)' +
+    '|([A-Za-z0-9._-]+/[A-Za-z0-9._-]+)#(\\d+)' +
+    '|#(\\d+))';
 // --- Gemini CLI hook templates ---
 /**
  * The ownership/presence marker that opens BOTH whole-file SessionStart hook
@@ -166,18 +184,67 @@ try {
 ${TOTEM_FILE_END}
 `;
 export const GEMINI_BEFORE_TOOL = `// [totem] auto-generated — Gemini CLI BeforeTool hook
-// Intercepts:
-//   1. git push/commit   → run \`totem lint\` before proceeding (existing shield-gate behavior)
-//   2. write_file/edit_file → block bare cross-repo refs in substrate paths
-//      (xrepo-qualify-refs, sealed in mmnto-ai/totem-strategy#145)
+// Intercepts (Gemini CLI write tools are write_file + replace — there is NO
+// edit_file; docs.gemini file-system tools + gemini-cli#20321):
+//   Guard 1: git push/commit → run \`totem lint\` before proceeding (shield-gate)
+//   Rule 1:  write_file/replace → block bare cross-repo refs in substrate paths —
+//            xrepo-qualify-refs, sealed in mmnto-ai/totem-strategy#145 (SHA c488888b).
+//   Rule 2:  write_file/replace → block GitHub auto-close keywords adjacent to an
+//            issue ref in **/*.md (EXEMPT .github/**, .totem/**) — design of
+//            record mmnto-ai/totem#1762; sibling seal pending its own PR.
 const { execSync } = require('child_process');
 
 const BARE_REF_REGEX_SOURCE = ${JSON.stringify(BARE_REF_REGEX_SOURCE)};
+// Single-sourced from @mmnto/totem's AUTO_CLOSE_REGEX_SOURCE (mmnto-ai/totem#1762);
+// inlined for the rendered standalone hook the way BARE_REF_REGEX_SOURCE is.
+const AUTO_CLOSE_REGEX_SOURCE = ${JSON.stringify(AUTO_CLOSE_REGEX_SOURCE)};
 const SCOPED_PATH_RE = /(\\.handoff[\\\\\\/]|\\.journal[\\\\\\/]|\\.md$)/i;
+const MD_PATH_RE = /\\.md$/i;
+// EXEMPT .github/** (intentional close keywords) and .totem/** (tool/agent-authored
+// lessons etc. — never a GitHub auto-close surface). NOT .changeset/**: changeset
+// prose is composed into the Version-Packages PR DESCRIPTION (an auto-close
+// surface — verified on PR mmnto-ai/totem#2474); use totem-context there.
+const GITHUB_EXEMPT_RE = /(^|[\\\\\\/])\\.(github|totem)[\\\\\\/]/i;
 const SUPPRESS_DIRECTIVE_RE = /<!--\\s*totem-context:/;
 
+// mmnto-ai/totem#1762: any close-keyword (close/fix/resolve inflections) adjacent
+// to an issue ref in narrative markdown can auto-close a linked issue when the
+// text reaches a PR body / commit message — genuine OR negated. Presence
+// invariant, zero semantics (no negation parser). Scoped to **/*.md, EXEMPT
+// .github/** (PR/issue templates where close keywords are intentional).
+function checkAutoCloseKeywords(toolName, toolInput) {
+  if (toolName !== 'write_file' && toolName !== 'edit_file' && toolName !== 'replace') return;
+  const input = (typeof toolInput === 'object' && toolInput !== null) ? toolInput : {};
+  const filePath = String(input.file_path || input.path || '');
+  if (!MD_PATH_RE.test(filePath) || GITHUB_EXEMPT_RE.test(filePath)) return;
+  const content = input.content !== undefined ? input.content : input.new_string;
+  if (typeof content !== 'string') return;
+
+  const lines = content.split(/\\r?\\n/);
+  const filtered = [];
+  for (let i = 0; i < lines.length; i++) {
+    const line = lines[i];
+    const prev = i > 0 ? lines[i - 1] : '';
+    if (SUPPRESS_DIRECTIVE_RE.test(line) || SUPPRESS_DIRECTIVE_RE.test(prev)) continue;
+    filtered.push(line);
+  }
+  const re = new RegExp(AUTO_CLOSE_REGEX_SOURCE, 'gi');
+  const matches = [...filtered.join('\\n').matchAll(re)];
+  if (matches.length === 0) return;
+
+  // Group layout: 1+2 = URL owner/repo+N; 3+4 = qualified owner/repo+N; 5 = bare N.
+  const refs = matches.slice(0, 5).map((m) => (m[1] ? m[1] + '#' + m[2] : m[3] ? m[3] + '#' + m[4] : '#' + m[5])).join(', ');
+  throw new Error(
+    '[totem BeforeTool] GitHub auto-close keyword adjacent to issue ref in write to ' + filePath + ': ' + refs + '\\n' +
+    'GitHub auto-closes linked issues from a PR body / commit message carrying this pattern (even under negation).\\n' +
+    'Rephrase to a non-keyword form (\`references\` / \`see\` / \`tracks\`).\\n' +
+    'For verbatim quotation, prefix with a \`<!-- totem-context: <reason> -->\` directive on the preceding line.\\n' +
+    'mmnto-ai/totem#1762.',
+  );
+}
+
 function checkXrepoQualifyRefs(toolName, toolInput) {
-  if (toolName !== 'write_file' && toolName !== 'edit_file') return;
+  if (toolName !== 'write_file' && toolName !== 'edit_file' && toolName !== 'replace') return;
   const input = (typeof toolInput === 'object' && toolInput !== null) ? toolInput : {};
   const filePath = String(input.file_path || input.path || '');
   if (!SCOPED_PATH_RE.test(filePath)) return;
@@ -198,7 +265,7 @@ function checkXrepoQualifyRefs(toolName, toolInput) {
 
   const refs = matches.slice(0, 5).map((m) => '#' + m[1]).join(', ');
   throw new Error(
-    '[totem PreWriteShield] Bare PR/issue reference(s) in write to ' + filePath + ': ' + refs + '. ' +
+    '[totem BeforeTool] Bare PR/issue reference(s) in write to ' + filePath + ': ' + refs + '. ' +
     'Qualify each as <owner>/<repo>#NNN (e.g., mmnto-ai/totem#1234). ' +
     'For verbatim quotation, prefix with a <!-- totem-context: <reason> --> directive on the preceding line. ' +
     'Sealed in mmnto-ai/totem-strategy#145.',
@@ -206,6 +273,7 @@ function checkXrepoQualifyRefs(toolName, toolInput) {
 }
 
 module.exports = function beforeTool(toolName, toolInput) {
+  checkAutoCloseKeywords(toolName, toolInput);
   checkXrepoQualifyRefs(toolName, toolInput);
 
   if (toolName !== 'run_shell_command') return;
@@ -261,6 +329,13 @@ export const CLAUDE_PRETOOLUSE_ENTRY = {
 // before they hit disk. Eliminates the agent friction loop where a write
 // only fails at commit-time (`totem lint` pre-commit).
 //
+// ALSO enforces the GitHub auto-close guard (mmnto-ai/totem#1762): any
+// close-keyword (close/fix/resolve inflections) adjacent to an issue ref in a
+// **/*.md write (EXEMPT .github/**, .totem/**) is blocked before it can reach a
+// PR body / commit message and accidentally auto-close a linked issue — presence
+// invariant, zero semantics, no negation parser. Shares @mmnto/totem's
+// AUTO_CLOSE_REGEX_SOURCE (the one shared evaluator).
+//
 // Exit-code contract is load-bearing — see hook source for details.
 //
 // Per OQ 2 of mmnto-ai/totem#1846 design: this entry installs into
@@ -270,8 +345,10 @@ export const CLAUDE_PRETOOLUSE_ENTRY = {
 // architectural distinction between seal-anchored substrate enforcement
 // and per-developer command interception.
 export const CLAUDE_PREWRITESHIELD = `// [totem] auto-generated — Claude Code PreWriteShield hook
-// Write-time enforcement of xrepo-qualify-refs.
-// Sealed in mmnto-ai/totem-strategy#145 (seal SHA c488888b).
+// Rule 1: xrepo-qualify-refs (bare cross-repo refs) —
+//         sealed in mmnto-ai/totem-strategy#145 (seal SHA c488888b).
+// Rule 2: GitHub auto-close keyword guard —
+//         design of record mmnto-ai/totem#1762; sibling seal pending its own PR.
 //
 // Mirrors the compiled rule pattern at lessonHash "xrepo-qualify-refs"
 // in mmnto-ai/totem-strategy:.totem/compiled-rules.json.
@@ -287,7 +364,16 @@ export const CLAUDE_PREWRITESHIELD = `// [totem] auto-generated — Claude Code
 'use strict';
 
 const BARE_REF_REGEX_SOURCE = ${JSON.stringify(BARE_REF_REGEX_SOURCE)};
+// Single-sourced from @mmnto/totem's AUTO_CLOSE_REGEX_SOURCE (mmnto-ai/totem#1762);
+// inlined for the rendered standalone .cjs the way BARE_REF_REGEX_SOURCE is.
+const AUTO_CLOSE_REGEX_SOURCE = ${JSON.stringify(AUTO_CLOSE_REGEX_SOURCE)};
 const SCOPED_PATH_RE = /(\\.handoff[\\\\\\/]|\\.journal[\\\\\\/]|\\.md$)/i;
+const AUTO_CLOSE_MD_RE = /\\.md$/i;
+// EXEMPT .github/** (intentional close keywords) and .totem/** (tool/agent-authored
+// content — never a GitHub auto-close surface). NOT .changeset/**: changeset prose
+// is composed into the Version-Packages PR DESCRIPTION (an auto-close surface —
+// verified on PR mmnto-ai/totem#2474); the totem-context directive is the escape.
+const AUTO_CLOSE_GITHUB_RE = /(^|[\\\\\\/])\\.(github|totem)[\\\\\\/]/i;
 const SUPPRESS_DIRECTIVE_RE = /<!--\\s*totem-context:/;
 
 let stdin = '';
@@ -332,8 +418,31 @@ process.stdin.on('end', () => {
     filtered.push(line);
   }
 
+  const joined = filtered.join('\\n');
+
+  // ── Auto-close keyword guard (mmnto-ai/totem#1762): **/*.md, EXEMPT .github/**, .totem/** ──
+  // Presence invariant, zero semantics: any close-keyword adjacent to an issue
+  // ref (genuine OR negated) is blocked. Checked before the bare-ref arm because
+  // accidental upstream-issue closure is the higher-blast-radius failure.
+  if (AUTO_CLOSE_MD_RE.test(filePath) && !AUTO_CLOSE_GITHUB_RE.test(filePath)) {
+    const acRe = new RegExp(AUTO_CLOSE_REGEX_SOURCE, 'gi');
+    const acMatches = [...joined.matchAll(acRe)];
+    if (acMatches.length > 0) {
+      // Group layout: 1+2 = URL owner/repo+N; 3+4 = qualified owner/repo+N; 5 = bare N.
+      const acRefs = acMatches.slice(0, 5).map((m) => (m[1] ? m[1] + '#' + m[2] : m[3] ? m[3] + '#' + m[4] : '#' + m[5])).join(', ');
+      process.stderr.write(
+        '[totem PreWriteShield] GitHub auto-close keyword adjacent to issue ref in write to ' + filePath + ': ' + acRefs + '\\n' +
+        'GitHub auto-closes linked issues from a PR body / commit message carrying this pattern (even under negation).\\n' +
+        'Rephrase to a non-keyword form (\`references\` / \`see\` / \`tracks\`).\\n' +
+        'For verbatim quotation, prefix with a \`<!-- totem-context: <reason> -->\` directive on the preceding line.\\n' +
+        'mmnto-ai/totem#1762.\\n',
+      );
+      process.exit(2);
+    }
+  }
+
   const re = new RegExp(BARE_REF_REGEX_SOURCE, 'g');
-  const matches = [...filtered.join('\\n').matchAll(re)];
+  const matches = [...joined.matchAll(re)];
   if (matches.length === 0) {
     process.exit(0);
   }

package/dist/commands/init-templates.js.map

@@ -1 +1 @@
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package/dist/commands/init.test.js

@@ -3,7 +3,7 @@ import * as fs from 'node:fs';
 import * as os from 'node:os';
 import * as path from 'node:path';
 import { afterEach, beforeEach, describe, expect, it, vi } from 'vitest';
-import { LedgerEventSchema, resolveSelfAgents } from '@mmnto/totem';
+import { AUTO_CLOSE_REGEX_SOURCE, LedgerEventSchema, resolveSelfAgents } from '@mmnto/totem';
 import { UNIVERSAL_BASELINE_LESSONS, UNIVERSAL_BASELINE_MARKDOWN, UNIVERSAL_BASELINE_MARKER, } from '../assets/universal-baseline.js';
 import { cleanTmpDir } from '../test-utils.js';
 import { buildNpxCommand, detectEmbeddingTier, detectReflexStatus, generateConfig, initCommand, installBaselineLessons, OLLAMA_FLOOR_DEFAULT_BASE_URL, probeOllamaFloor, REFLEX_VERSION, scaffoldClaudeHooks, scaffoldClaudeSessionStart, scaffoldClaudeSkill, scaffoldClaudeWriteShield, scaffoldFile, scaffoldMcpConfig, upgradeReflexes, } from './init.js';
@@ -1179,6 +1179,12 @@ describe('CLAUDE_PREWRITESHIELD template', () => {
     it('cites the seal at mmnto-ai/totem-strategy#145', () => {
         expect(CLAUDE_PREWRITESHIELD).toContain('mmnto-ai/totem-strategy#145');
     });
+    it('inlines the shared AUTO_CLOSE_REGEX_SOURCE (mmnto-ai/totem#1762, JSON-encoded)', () => {
+        expect(CLAUDE_PREWRITESHIELD).toContain(JSON.stringify(AUTO_CLOSE_REGEX_SOURCE));
+    });
+    it('cites the auto-close issue mmnto-ai/totem#1762', () => {
+        expect(CLAUDE_PREWRITESHIELD).toContain('mmnto-ai/totem#1762');
+    });
 });
 describe('PreWriteShield runtime behavior', () => {
     let tmpDir;
@@ -1291,6 +1297,96 @@ describe('PreWriteShield runtime behavior', () => {
         });
         expect(result.exitCode).toBe(0);
     });
+    // ─── Auto-close keyword guard (mmnto-ai/totem#1762) ───────────────────────
+    it('exits 2 on a close keyword adjacent to an issue ref in a **/*.md write', () => {
+        const result = runHook({
+            tool_name: 'Write',
+            tool_input: { file_path: 'docs/x.md', content: 'Closes #131' },
+        });
+        expect(result.exitCode).toBe(2);
+        expect(result.stderr).toMatch(/auto-close/i);
+        expect(result.stderr).toContain('#131');
+    });
+    it('exits 2 even under NEGATION (presence invariant — the #2471 shape)', () => {
+        const result = runHook({
+            tool_name: 'Write',
+            tool_input: { file_path: '.journal/t.md', content: 'Does not close #2466' },
+        });
+        expect(result.exitCode).toBe(2);
+        expect(result.stderr).toMatch(/auto-close/i);
+        expect(result.stderr).toContain('#2466');
+    });
+    it('exits 2 on a QUALIFIED close ref (owner/repo#N still auto-closes)', () => {
+        const result = runHook({
+            tool_name: 'Write',
+            tool_input: { file_path: 'docs/x.md', content: 'Closes mmnto-ai/totem#131' },
+        });
+        expect(result.exitCode).toBe(2);
+        expect(result.stderr).toMatch(/auto-close/i);
+    });
+    it('exits 2 on the issue-URL close form (kimi BLOCKING-1)', () => {
+        const result = runHook({
+            tool_name: 'Write',
+            tool_input: {
+                file_path: 'docs/x.md',
+                content: 'Fixes https://github.com/mmnto-ai/totem/issues/2466',
+            },
+        });
+        expect(result.exitCode).toBe(2);
+        expect(result.stderr).toMatch(/auto-close/i);
+        expect(result.stderr).toContain('mmnto-ai/totem#2466');
+    });
+    it('EXEMPTS .github/** from the auto-close guard (AC-4 — keywords intentional there)', () => {
+        // Qualified ref so the sealed bare-ref arm (unchanged) also stays quiet; this
+        // isolates the auto-close .github exemption.
+        const result = runHook({
+            tool_name: 'Write',
+            tool_input: {
+                file_path: '.github/PULL_REQUEST_TEMPLATE.md',
+                content: 'Closes mmnto-ai/totem#131',
+            },
+        });
+        expect(result.exitCode).toBe(0);
+    });
+    it('EXEMPTS .totem/** from the auto-close guard (gemini #2 — tool/agent-authored content)', () => {
+        // Qualified ref isolates the auto-close .totem exemption from the sealed
+        // bare-ref rule (which still applies to .totem/*.md — out of this slice's scope).
+        const result = runHook({
+            tool_name: 'Write',
+            tool_input: { file_path: '.totem/lessons/x.md', content: 'Closes mmnto-ai/totem#131' },
+        });
+        expect(result.exitCode).toBe(0);
+    });
+    it('does NOT exempt .changeset/** (its prose is composed into the VP-PR description)', () => {
+        // gemini #2 DECLINED half: changeset prose lands in the Version-Packages PR
+        // description (an auto-close surface — verified on PR mmnto-ai/totem#2474).
+        const result = runHook({
+            tool_name: 'Write',
+            tool_input: { file_path: '.changeset/happy-lions.md', content: 'Fixes mmnto-ai/totem#131' },
+        });
+        expect(result.exitCode).toBe(2);
+        expect(result.stderr).toMatch(/auto-close/i);
+    });
+    it('respects the suppression-directive bypass for a verbatim-quoted close keyword', () => {
+        const result = runHook({
+            tool_name: 'Write',
+            tool_input: {
+                file_path: 'docs/x.md',
+                content: '<!-- totem-context: verbatim quotation of a historical commit -->\nThe commit said closes #131.',
+            },
+        });
+        expect(result.exitCode).toBe(0);
+    });
+    it('exits 0 on a non-keyword issue reference in markdown (references/see form)', () => {
+        const result = runHook({
+            tool_name: 'Write',
+            tool_input: {
+                file_path: 'docs/x.md',
+                content: 'references mmnto-ai/totem#131 and see mmnto-ai/totem#5',
+            },
+        });
+        expect(result.exitCode).toBe(0);
+    });
 });
 describe('CLAUDE_SESSION_START runtime behavior (A.3.a ledger write)', () => {
     // Fail-fast guard for the spawned hook process, matching the 30s timeout
@@ -1369,10 +1465,16 @@ describe('CLAUDE_SESSION_START runtime behavior (A.3.a ledger write)', () => {
         }
     });
 });
-describe('GEMINI_BEFORE_TOOL write_file/edit_file extension', () => {
-    it('extends BeforeTool with write_file/edit_file branch', () => {
-        expect(GEMINI_BEFORE_TOOL).toContain("'write_file'");
-        expect(GEMINI_BEFORE_TOOL).toContain("'edit_file'");
+describe('GEMINI_BEFORE_TOOL write_file/replace extension', () => {
+    it('gates BOTH check functions on write_file + replace (+ legacy edit_file)', () => {
+        // Gemini CLI's real write tools are `write_file` + `replace` — there is NO
+        // `edit_file` (docs.gemini file-system tools; gemini-cli#20321). Every check
+        // function must list `replace`, else surgical edits bypass the hook
+        // (gemini #1). `edit_file` is kept for backward-safety.
+        const gates = [...GEMINI_BEFORE_TOOL.matchAll(/toolName !== '([a-z_]+)'/g)].map((m) => m[1]);
+        for (const wanted of ['write_file', 'replace']) {
+            expect(gates.filter((g) => g === wanted).length).toBeGreaterThanOrEqual(2);
+        }
     });
     it('inlines BARE_REF_REGEX_SOURCE in write-tool branch (JSON-encoded for safe JS string-literal embedding)', () => {
         expect(GEMINI_BEFORE_TOOL).toContain(JSON.stringify(BARE_REF_REGEX_SOURCE));
@@ -1384,6 +1486,85 @@ describe('GEMINI_BEFORE_TOOL write_file/edit_file extension', () => {
     it('cites the seal at mmnto-ai/totem-strategy#145 in BeforeTool extension', () => {
         expect(GEMINI_BEFORE_TOOL).toContain('mmnto-ai/totem-strategy#145');
     });
+    it('inlines the shared AUTO_CLOSE_REGEX_SOURCE (mmnto-ai/totem#1762, parity with PreWriteShield)', () => {
+        expect(GEMINI_BEFORE_TOOL).toContain(JSON.stringify(AUTO_CLOSE_REGEX_SOURCE));
+    });
+    it('wires the auto-close check into beforeTool and cites mmnto-ai/totem#1762', () => {
+        expect(GEMINI_BEFORE_TOOL).toContain('checkAutoCloseKeywords(toolName, toolInput)');
+        expect(GEMINI_BEFORE_TOOL).toContain('mmnto-ai/totem#1762');
+    });
+});
+describe('GEMINI_BEFORE_TOOL auto-close runtime behavior (mmnto-ai/totem#1762)', () => {
+    let tmpDir;
+    let hookPath;
+    beforeEach(() => {
+        tmpDir = fs.mkdtempSync(path.join(os.tmpdir(), 'totem-gemini-beforetool-'));
+        hookPath = path.join(tmpDir, 'BeforeTool.js');
+        fs.writeFileSync(hookPath, GEMINI_BEFORE_TOOL, 'utf-8');
+    });
+    afterEach(() => {
+        cleanTmpDir(tmpDir);
+    });
+    /** Require the rendered hook fresh and report whether it threw. */
+    function runBeforeTool(tool, input) {
+        // eslint-disable-next-line @typescript-eslint/no-require-imports
+        const beforeTool = require(hookPath);
+        try {
+            beforeTool(tool, input);
+            return { threw: false, message: '' };
+        }
+        catch (err) {
+            return { threw: true, message: err instanceof Error ? err.message : String(err) };
+        }
+    }
+    it('throws (blocks) on a close keyword adjacent to an issue ref in a **/*.md write, even negated', () => {
+        const r = runBeforeTool('write_file', {
+            file_path: 'docs/x.md',
+            content: 'Does not close #2466',
+        });
+        expect(r.threw).toBe(true);
+        expect(r.message).toMatch(/auto-close/i);
+        expect(r.message).toContain('#2466');
+    });
+    it('blocks the auto-close rule via the real `replace` edit tool (gemini #1)', () => {
+        const r = runBeforeTool('replace', {
+            file_path: 'docs/x.md',
+            new_string: 'Fixes https://github.com/mmnto-ai/totem/issues/2466',
+        });
+        expect(r.threw).toBe(true);
+        expect(r.message).toContain('mmnto-ai/totem#2466');
+    });
+    it('blocks the xrepo bare-ref rule via `replace` too (fixes the same pre-existing gap)', () => {
+        const r = runBeforeTool('replace', { file_path: '.journal/x.md', new_string: 'see #9 above' });
+        expect(r.threw).toBe(true);
+        expect(r.message).toMatch(/Bare PR\/issue/i);
+    });
+    it('uses the [totem BeforeTool] prefix, not [totem PreWriteShield] (gemini #3)', () => {
+        const r = runBeforeTool('write_file', { file_path: 'docs/x.md', content: 'Closes #5' });
+        expect(r.message).toContain('[totem BeforeTool]');
+        expect(r.message).not.toContain('PreWriteShield');
+    });
+    it('exempts .github/** (qualified ref keeps the bare-ref arm quiet too)', () => {
+        const r = runBeforeTool('write_file', {
+            file_path: '.github/x.md',
+            content: 'Closes mmnto-ai/totem#5',
+        });
+        expect(r.threw).toBe(false);
+    });
+    it('exempts .totem/** from the auto-close rule (gemini #2)', () => {
+        const r = runBeforeTool('write_file', {
+            file_path: '.totem/lessons/x.md',
+            content: 'Closes mmnto-ai/totem#5',
+        });
+        expect(r.threw).toBe(false);
+    });
+    it('does not throw on a non-keyword reference form', () => {
+        const r = runBeforeTool('edit_file', {
+            file_path: 'docs/x.md',
+            new_string: 'see mmnto-ai/totem#5',
+        });
+        expect(r.threw).toBe(false);
+    });
 });
 describe('scaffoldClaudeSkill (mmnto-ai/totem#1890 Phase C slice 3)', () => {
     let tmpDir;