@mmerterden/multi-agent-pipeline 20.8.2 → 20.8.3

package/CHANGELOG.md

@@ -16,6 +16,12 @@ Internal file-layout changes that don't affect the slash-command surface are sti
 
 ## [Unreleased]
 
+## [20.8.3] - 2026-09-27
+
+### Fixed
+
+- Upgrading from an install that copied the knowledge catalog into `~/.claude/skills` removes every copy whose files all match a version the catalog once shipped, not only copies identical to the current one. `install/catalog-history.json` holds the git blob hash of every file each catalog skill has shipped with, generated by `pipeline/scripts/gen-catalog-history.mjs` and checked in `npm test`; a copy with any file that never shipped is kept as the user's and still needs `--prune-external`.
+
 ## [20.8.2] - 2026-09-27
 
 ### Fixed

package/docs/facts.json

@@ -1,7 +1,7 @@
 {
   "$comment": "Generated by pipeline/scripts/gen-facts.mjs. Do not hand-edit: the site reads this, and a number edited here instead of at its source is the drift this file removes.",
   "generatedAt": "2026-09-27",
-  "version": "20.8.2",
+  "version": "20.8.3",
   "phaseSchema": 2,
   "phases": [
     {

package/install/_common.mjs

@@ -1076,6 +1076,55 @@ export function dirsIdentical(a, b) {
   return true;
 }
 
+/**
+ * True when every file under `dir` has the bytes of some version the catalog
+ * shipped for that skill, per install/catalog-history.json. Such a copy holds
+ * nothing of the user's; a file that never shipped means it was edited.
+ *
+ * @param {string} dir - installed skill dir
+ * @param {{prefix: number, skills: Record<string, Record<string, string[]>>} | null} history
+ * @param {string} name - catalog skill name
+ * @returns {boolean}
+ */
+export function matchesShippedVersion(dir, history, name) {
+  const shipped = history?.skills?.[name];
+  if (!shipped) return false;
+  const walk = (d) =>
+    readdirSync(d, { withFileTypes: true }).flatMap((e) => {
+      const p = join(d, e.name);
+      if (e.isDirectory()) return walk(p);
+      return e.isFile() ? [p] : [null];
+    });
+  const files = walk(dir);
+  if (files.length === 0 || files.includes(null)) return false;
+  return files.every((file) => {
+    const rel = file
+      .slice(dir.length + 1)
+      .split(sep)
+      .join("/");
+    const buf = readFileSync(file);
+    const hash = createHash("sha1")
+      .update(`blob ${buf.length}\0`)
+      .update(buf)
+      .digest("hex")
+      .slice(0, history.prefix);
+    return shipped[rel]?.includes(hash) ?? false;
+  });
+}
+
+/**
+ * @param {string} path - install/catalog-history.json
+ * @returns {{prefix: number, skills: Record<string, Record<string, string[]>>} | null}
+ */
+export function loadCatalogHistory(path) {
+  try {
+    const data = JSON.parse(readFileSync(path, "utf-8"));
+    return data && data.version === 1 && Number.isInteger(data.prefix) ? data : null;
+  } catch {
+    return null;
+  }
+}
+
 /**
  * Same `local-only: true` frontmatter convention the command wrappers use:
  * a dir carrying it is the user's and no prune path may take it.

package/install/_dev-only-files.mjs

@@ -67,6 +67,7 @@ const DEV_ONLY_TOOLING = Object.freeze([
   "lint-mcp-refs.mjs",
   "check-md-links.mjs",
   "check-rewrite-overlap.mjs", // compares a rewrite against a source only a maintainer has
+  "gen-catalog-history.mjs", // reads the repo's git history; an install has none
   "gen-ref-toc.mjs", // regenerates the repo's own reference tree; an install has no pipeline/
   "validate-schemas.mjs", // validates the repo's own schema files, needs ajv
   "sync-parity-check.sh",

package/install/catalog-history.json

@@ -0,0 +1 @@
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package/install/claude.mjs

@@ -24,6 +24,8 @@ import {
   copySkillsIndex,
   countFiles,
   dirsIdentical,
+  loadCatalogHistory,
+  matchesShippedVersion,
   ensureDir,
   ensureRealDir,
   isDryRun,
@@ -487,11 +489,13 @@ function installSkills(opts) {
   // Pre-manifest installs (<= v14.x) never wrote that manifest, so the branch
   // above cannot fire for them and the full 151-dir catalog would outlive every
   // upgrade. For those, prune by proof instead of by name: a dir byte-identical
-  // to the shipped catalog contains nothing of the user's and goes now; a dir
+  // to the shipped catalog, or to any version of it ever shipped
+  // (install/catalog-history.json), contains nothing of the user's and goes now; a dir
   // that differs is kept unless --prune-external explicitly opts in (and even
   // then a `local-only: true` SKILL.md keeps it).
   migratePreManifestExternalSkills(dest, join(pipelineSrc, "skills", "shared", "external"), {
     pruneExternal: Boolean(pruneExternal),
+    history: loadCatalogHistory(join(dirname(pipelineSrc), "install", "catalog-history.json")),
   });
 
   // Figma component skills moved to the ai-<platform>-toolkit marketplace
@@ -597,8 +601,8 @@ function pruneManifestDeliveredSkills(dest) {
 /**
  * Migration for pre-manifest installs (<= v14.x): the external catalog was
  * copied here with no delivery manifest, so ours and the user's are told apart
- * by content, not by name. Byte-identical to the shipped catalog = provably
- * ours, removed. Different = kept, reported, and removable only via the
+ * by content, not by name. Byte-identical to the shipped catalog, or every
+ * file matching a version the catalog once shipped = provably ours, removed. Different = kept, reported, and removable only via the
  * explicit `--prune-external` flag (which still honors `local-only: true`).
  *
  * @param {string} dest - the installed skills directory
@@ -607,7 +611,7 @@ function pruneManifestDeliveredSkills(dest) {
  */
 function migratePreManifestExternalSkills(dest, externalSrc, opts) {
   if (!existsSync(externalSrc) || !existsSync(dest)) return;
-  const { pruneExternal } = opts;
+  const { pruneExternal, history } = opts;
   let identical = 0;
   let flagged = 0;
   const leftover = [];
@@ -635,13 +639,15 @@ function migratePreManifestExternalSkills(dest, externalSrc, opts) {
 
     let provablyOurs;
     try {
-      provablyOurs = dirsIdentical(join(externalSrc, name), stale);
+      provablyOurs =
+        dirsIdentical(join(externalSrc, name), stale) ||
+        matchesShippedVersion(stale, history, name);
     } catch {
       provablyOurs = false;
     }
     if (provablyOurs) {
       if (isDryRun()) {
-        console.log(`    [dry-run] would prune ${name}/ (identical to shipped catalog)`);
+        console.log(`    [dry-run] would prune ${name}/ (matches a shipped catalog version)`);
         identical++;
         continue;
       }

package/manifest.json

@@ -1,12 +1,12 @@
 {
   "name": "@mmerterden/multi-agent-pipeline",
-  "version": "20.8.2",
-  "commit": "cc78721bb6e4e462ca13784dd59f72f398cefdb6",
-  "generatedAt": "2026-09-27T08:25:32.332Z",
+  "version": "20.8.3",
+  "commit": "3f3e81e36f61082d8d60a4214370fb2aac60ad3e",
+  "generatedAt": "2026-09-27T09:04:56.695Z",
   "algorithm": "sha256",
-  "fileCount": 1217,
+  "fileCount": 1218,
   "files": {
-    "CHANGELOG.md": "1257d760c295813b381c3a7a91886faea510694d5004c23c4c1febcbc5ec3b2d",
+    "CHANGELOG.md": "dfcc43699a7828ead8ac6004f41db5791a4ddb2037ae7528eb35dbdb3c85b35c",
     "LICENSE": "8d8c51aaf1e1538b180c69965fa038db71be86798cc3e26a143bebfefe16a43e",
     "README.md": "0613eebb0b38062bd94c44043595d1950b5c9b470874dd8e402c052fd20960cf",
     "README.tr.md": "0c6b5e6943d6c3d3bf3a7ed99c705fb9a78d15d7722e6252f58404d3f6d3524d",
@@ -33,7 +33,7 @@
     "docs/best-practices.md": "f8b75b0d38b5896a6a852bb30a1edddeb24dab8b5b7b1d9313290e1241c72024",
     "docs/ecosystem.md": "e6c00f30e95b5e178f77bdfbefd686c8a4164f39c03865a89ab23465d1a37acf",
     "docs/engineering.md": "550528cd47c7d2c921729c68d0782a00ac8e77a4bdfec479f6749f9c3235d188",
-    "docs/facts.json": "f926524cabdd39a875a0dd1ee222a401a56d5b55b32eb1c1c3faa4857f969570",
+    "docs/facts.json": "04ebe641276d5087ad0212e93c9f2e7534403edd014c738f7fc06d8da6b5607c",
     "docs/features.md": "6c9f0efb00c683e6f611c440c87847b187f8b0eee59e9e812f3a241695bc2ae1",
     "docs/performance.md": "bbf2f3922c25dcba0c1a9e69ef420e3871a729af5b35009a49b48a5d3c5cd151",
     "docs/recovery-guide.md": "59a8f1b66b34cb9ff5507b3d54dac3b9915e184aa044d9c758d18cac818d510e",
@@ -42,16 +42,17 @@
     "install.js": "b2d71a926a62c96c994c76735f40dff068c429b5a368005fb62e60972da41c2a",
     "install/_codex-agents.mjs": "983eb1104f84faf0b3b71f6925747e268f9aac110df70a148bfeedcc8759cdf7",
     "install/_codex-instructions.mjs": "add75ffc0e8d8db0e3bf275b46017a897a4cadb83dc66c7d3affd73bcead20f8",
-    "install/_common.mjs": "208c71eb135ef3f4d3622096b68210ae22a150941600e60f959a344fd04a1671",
+    "install/_common.mjs": "ca09ce68ba019cbffe4be583ecfb74edcd3102824af0decc1cafd5563280f0c7",
     "install/_copilot-instructions.mjs": "73e4b82b2af0f3e1669f772fa0788dac6b540c131e56d5fe38dcf29be85cc019",
-    "install/_dev-only-files.mjs": "51285901f3b650ff22a76f8c05b23c69b9ceb6fe3da3333cece9e0caf65065a4",
+    "install/_dev-only-files.mjs": "3391819c5e779b9e6d5a330d4937509c591e4c35ac937d25bafd86b37ca95b73",
     "install/_managed-block.mjs": "7328728a7c82744b66218034389fc295d1384311daa5415408afa94be14303d3",
     "install/_mcp-register.mjs": "1b1c294c3333c912aab3929ef67dc68b1e24e65d01f2073bf7e23193b3e37c71",
     "install/_platform-filter.mjs": "1c66acc79da0da0c1aa5a57050989e84198c3153e6437ee03f1d3bacbb12ff2c",
     "install/_plugin-skills.mjs": "bf287053133f940df0ca434cfc5ee522fd27e80dc7f7e60ccc963ecaabee047a",
     "install/_telemetry.mjs": "5433d753f909beed2c8789272bba05e245482c472f83d3444f58000c4c9a634b",
     "install/_unattended-profile.mjs": "e1ed82bde35d19105ee12c2a551eb778912b0e5c93ab227fd15c993098d98de0",
-    "install/claude.mjs": "8f4a5cd547651744710c6b1682d2ae5e9757cc4b963c3288c6c91a27a67edc69",
+    "install/catalog-history.json": "fd545686999f2231b902eb2a614614b8e0b0b2812a94b236fdfa96cd01d31f5b",
+    "install/claude.mjs": "1ca3b70d784e462435df57de60a0af70dc33a10c431a8487a7766286f03fcde6",
     "install/codex.mjs": "2c2238cd9dd2f95b4a50a505387e8e49ddc1513ae13998f05f1ed3e3a71b18e7",
     "install/copilot.mjs": "300a74f17084d1a38f16428ca7477394c29e33cd755156e19b92e457999be234",
     "install/index.mjs": "07ec26ecdd81cc983f146faf4b7095c98edce39c89a6fd83c24ce43229d2d9e7",
@@ -61,7 +62,7 @@
     "install/templates/multi-agent-autopilot-awake.plist.template": "ddd25c76c56fcbb38a89de8e35637372d70ace993d6bc487a88ca9cfb702fe1f",
     "install/templates/multi-agent-autopilot.plist.template": "122c8a61cd927edd99375d6e3da40f1d42bcceed5b6641785c8b28bb930bc77e",
     "install/unattended-profile-legacy.json": "f52e86b998956f09ad306b1735a6c10b58580d7082d8a55665a4c6bb15c3aa1f",
-    "package.json": "b606c47b1f00601d119acc868bdb8ed4cd969f03d4a02d0f07c8b5d560b8ac33",
+    "package.json": "ebe1ae6db68a37e3e2b8bd377007bb90376f2dd94bf5b9d94706d668401efacd",
     "pipeline/agents/android-architect.md": "11fb74543cb0ebcf9525ca6654fe95d53da7229e0bf4a1149b31fd9005abc453",
     "pipeline/agents/backend-architect.md": "b02a606c301e4714131aed70ae6d16eeb77fbc819a001e2752cff2488d4246de",
     "pipeline/agents/bulk-reader.md": "6597052cd7d205bac2b1c7633f5232fe1a40730664a913b8eb77efd5a786dc25",
@@ -596,7 +597,7 @@
     "pipeline/scripts/worktree-prepare.sh": "9391c828375b127f77c86e3c830dbbaf355a61464c6437319969f2f1eecc72b1",
     "pipeline/scripts/worktrees.mjs": "90dfd09b70fffe9b56c331a4ae2692cc248f4898f4ee6aee4239ef0b20888a90",
     "pipeline/scripts/write-state.mjs": "e1198bf970eace07d3eff22b394808a526e473df65d3d58aa2d5a12cfdac8b49",
-    "pipeline/skills/.skill-manifest.json": "a9630d718fa494d75e17f8ea822eb1501b85aa165362e98e53d3789d6e57a051",
+    "pipeline/skills/.skill-manifest.json": "b9e45e544df8f0412ff5e3183465312580bda7497012ca8eee926dd39da3a0be",
     "pipeline/skills/.skills-index.json": "042b1090f3e2ca310c6ce70d1bb304e8c7f96bd73133e504b95d83801608e470",
     "pipeline/skills/shared/README.md": "a144fb39993470b6379d9660e0ee0371bdc858aee3d7c1b375cb6aba03d046db",
     "pipeline/skills/shared/core/apple-archive-compliance/SKILL.md": "7239fef717ea45b79276bfcc2c3903acd57950b6e00dd6a2a66399c4b09cbd51",

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mmerterden/multi-agent-pipeline",
-  "version": "20.8.2",
+  "version": "20.8.3",
   "description": "6-phase AI development pipeline with full orchestration on Claude Code, Copilot CLI and Codex CLI. Analysis, planning, TDD, CLI-aware parallel review with consensus surfacing + Fable triage, default-FAIL evidence gates, secret + intent guards, per-phase cost ledger, persistent learnings memory, wiki generation, commit automation. Token-preserving uninstall.",
   "type": "module",
   "main": "index.js",
@@ -20,7 +20,7 @@
   },
   "scripts": {
     "start": "node index.js",
-    "test": "npm run format:check && npm run lint && node --test test/*.test.mjs && node pipeline/scripts/run-smokes.mjs && node pipeline/scripts/lint-skills.mjs && node pipeline/scripts/gen-skills-index.mjs --check && node pipeline/scripts/lint-personas.mjs && node pipeline/scripts/lint-mcp-refs.mjs && node pipeline/scripts/eval-triage.mjs && node pipeline/scripts/eval-golden-tasks.mjs && node pipeline/scripts/eval-intent.mjs && node pipeline/scripts/eval-recall.mjs && node pipeline/scripts/eval-guard-robustness.mjs && node pipeline/scripts/validate-schemas.mjs && node pipeline/scripts/validate-prefs.mjs && node pipeline/scripts/scorecard.mjs",
+    "test": "npm run format:check && npm run lint && node --test test/*.test.mjs && node pipeline/scripts/run-smokes.mjs && node pipeline/scripts/lint-skills.mjs && node pipeline/scripts/gen-skills-index.mjs --check && node pipeline/scripts/gen-catalog-history.mjs --check && node pipeline/scripts/lint-personas.mjs && node pipeline/scripts/lint-mcp-refs.mjs && node pipeline/scripts/eval-triage.mjs && node pipeline/scripts/eval-golden-tasks.mjs && node pipeline/scripts/eval-intent.mjs && node pipeline/scripts/eval-recall.mjs && node pipeline/scripts/eval-guard-robustness.mjs && node pipeline/scripts/validate-schemas.mjs && node pipeline/scripts/validate-prefs.mjs && node pipeline/scripts/scorecard.mjs",
     "test:unit": "node --test test/*.test.mjs",
     "test:smoke": "node pipeline/scripts/run-smokes.mjs",
     "lint:skills": "node pipeline/scripts/lint-skills.mjs",
@@ -94,6 +94,7 @@
     "!pipeline/scripts/run-smokes.mjs",
     "!pipeline/scripts/eval-*.mjs",
     "!pipeline/scripts/check-rewrite-overlap.mjs",
+    "!pipeline/scripts/gen-catalog-history.mjs",
     "!pipeline/scripts/gen-ref-toc.mjs",
     "!pipeline/scripts/make-manifest.mjs",
     "!pipeline/scripts/scorecard-snapshot.mjs",

package/pipeline/skills/.skill-manifest.json

@@ -1,6 +1,6 @@
 {
   "schemaVersion": "1.0.0",
-  "generatedAt": "2026-09-27T07:55:06Z",
+  "generatedAt": "2026-09-27T08:34:06Z",
   "skillCount": 218,
   "entries": [
     {