@mmerterden/multi-agent-pipeline 20.22.0 → 20.23.0

package/manifest.json

@@ -1,12 +1,12 @@
 {
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-  "commit": "03ec5c2c13457c10b8531763fb36cf24a3f50a5a",
-  "generatedAt": "2026-10-12T23:07:06.881Z",
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+  "generatedAt": "2026-10-13T11:40:10.540Z",
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@@ -21,7 +21,7 @@
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@@ -91,7 +92,7 @@
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@@ -202,7 +203,7 @@
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@@ -248,7 +249,7 @@
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@@ -349,7 +350,7 @@
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     "pipeline/scripts/validate-test-gap.mjs": "14fa89867e49497adb2b88a3290e78d0f263afa74a5b83b062115fc5a22204f7",
     "pipeline/scripts/validate-triage.mjs": "7cd78686494c4dc003b4cd66817dfe583adbdab536b54da3fbb80c9fa0e1a216",
-    "pipeline/scripts/valven-gate.mjs": "52852c572f10617f7c71db5bd425b26a019d4107129656d6def7bf579ccc5e76",
-    "pipeline/scripts/valven-port.mjs": "5b064d67b8a39896f64fdead7aa65ef8ce747cf58cf44bbee90025abe4300247",
-    "pipeline/scripts/valven-split.mjs": "c5700ee1738bc4a215321a45bc093c325ec132410c32660e72b76f38bea8d0eb",
+    "pipeline/scripts/valven-gate.mjs": "1bd10b59fe2e282759942c1a3961facabc4c0c36b1e603aadc9f8ef00b27b513",
+    "pipeline/scripts/valven-port.mjs": "e3bfb596e3472c515a041c9408e7369f87919504882869331525d28829bcf388",
+    "pipeline/scripts/valven-split.mjs": "2119fce1c109b9388aab3e39b3ba645a61f38182aa7bf64a557930284946a104",
     "pipeline/scripts/verify-citations.mjs": "e3c6a3edb1d360a9ea8690d35157faa47d312dfdc87595a87350c456cc72319c",
     "pipeline/scripts/verify-skills.sh": "871fcdfe5567232cd49a4cce4401911a06c8df6ab712d0597e17ce1bf0f63d80",
     "pipeline/scripts/verify.mjs": "fdc9843dc33b37d08d132617f158b8fe10cc4ab3be5bf31714bf2453ac0f714f",
@@ -698,7 +701,7 @@
     "pipeline/scripts/worktrees.mjs": "90dfd09b70fffe9b56c331a4ae2692cc248f4898f4ee6aee4239ef0b20888a90",
     "pipeline/scripts/write-state.mjs": "e1198bf970eace07d3eff22b394808a526e473df65d3d58aa2d5a12cfdac8b49",
     "pipeline/scripts/write-store-config.mjs": "b994a061f6febb2ca3d396074d8b51d2c1c1f991d3072d321703380da3639a56",
-    "pipeline/skills/.skill-manifest.json": "a3855be72470070e382c3c45457569cdc8d4bce1efbc163f7d3aacb751018c57",
+    "pipeline/skills/.skill-manifest.json": "bae66a65ec530c9ca10931f0fdbda0b562b84eddf55d40d7663695c98b1d9b7d",
     "pipeline/skills/.skills-index.json": "b2917fa44e273b939549f1c3ab3dd81c26ba8168772bc7644c9fa076116d8a4c",
     "pipeline/skills/shared/README.md": "928fe4292be729c3b7d7d0898cade8be0dfa868f208e0c6d1fe7b2c6bd6223c5",
     "pipeline/skills/shared/core/apple-archive-compliance/SKILL.md": "7239fef717ea45b79276bfcc2c3903acd57950b6e00dd6a2a66399c4b09cbd51",
@@ -755,7 +758,7 @@
     "pipeline/skills/shared/core/multi-agent-search/SKILL.md": "5f5177cd28cbb13583441fb98402cfa251c78e69de693540584e9a1dcc7692cb",
     "pipeline/skills/shared/core/multi-agent-security-review/SKILL.md": "3c483d5942f2c2b81c0537d4db0b36804c13cabd66fd7fae2972d07a8f239f69",
     "pipeline/skills/shared/core/multi-agent-serve/SKILL.md": "90e4dd7225e10e670118ed05d0c8a9e346112c4bbbdb24a7fe7c5c334a83e848",
-    "pipeline/skills/shared/core/multi-agent-setup/SKILL.md": "79a4afa655df12221a25bc386a32e61c38016d2de660dd618b404ca8bb0b28d3",
+    "pipeline/skills/shared/core/multi-agent-setup/SKILL.md": "73a1d1d8484d32b6d83107632a84aeced2f230f8581b7d47cad5e2d14e13860a",
     "pipeline/skills/shared/core/multi-agent-stack/SKILL.md": "ac964cd00dd6ed06512530489d867efbc51d7d7614265f9aa022679325d5defe",
     "pipeline/skills/shared/core/multi-agent-status/SKILL.md": "444c3773b52e6786e40bc67c8833ea6aecadbcd4459b01127b4aff152157040a",
     "pipeline/skills/shared/core/multi-agent-steer/SKILL.md": "20f332bd2fe2745da5341f8d8187211fc47c06b4b5f5031e217affee0282ddb5",
@@ -768,7 +771,7 @@
     "pipeline/skills/shared/core/multi-agent-test/SKILL.md": "538c7e27f1137975127883b249ebd552d07a114fe27aa33b31a0e659c93cd742",
     "pipeline/skills/shared/core/multi-agent-testflight-validation/SKILL.md": "6bfd1569117bfbacb485d831c0b7f262ebb3a2f9471f6177a646f5ce32c06a25",
     "pipeline/skills/shared/core/multi-agent-uninstall/SKILL.md": "9dccf78ffc2fb014d83f67d683d395f56f4fad8b5a36b9aa84e6cbd075b58818",
-    "pipeline/skills/shared/core/multi-agent-update/SKILL.md": "013317432263490a01d081b657928b977012afb78f75a64d278d94d2daa8e894",
+    "pipeline/skills/shared/core/multi-agent-update/SKILL.md": "2f9e224e240e1c9053a59066678f869ae36f18c088482488f3bda8fd207148ea",
     "pipeline/skills/shared/core/multi-agent/SKILL.md": "a39f712426638e7955db9171c950be720f11c861621884e628c81a0b6a49de5d",
     "pipeline/skills/shared/external/NOTICE-avdlee-swiftui-agent-skill.md": "400842e4653f038fad22509fe3f3d152151120758f5f9b170e6dba59afaf4a48",
     "pipeline/skills/shared/external/NOTICE-dimillian-skills.md": "f9c3d783fd3563418c18291b90899251e890fd3fa8ee353c8c1fbbe61078526e",

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mmerterden/multi-agent-pipeline",
-  "version": "20.22.0",
+  "version": "20.23.0",
   "description": "6-phase AI development pipeline with full orchestration on Claude Code, Copilot CLI and Codex CLI. Analysis, planning, TDD, CLI-aware parallel review with consensus surfacing + Fable triage, default-FAIL evidence gates, secret + intent guards, per-phase cost ledger, persistent learnings memory, wiki generation, commit automation. Token-preserving uninstall.",
   "type": "module",
   "main": "index.js",

package/pipeline/commands/multi-agent/create-jira/SKILL.md

@@ -26,7 +26,7 @@ Type is chosen at step [3/12] via AskUserQuestion (never inferred silently). Eac
 |---|---|---|
 | `Task` | Detailed Description, Scope, Acceptance Criteria, Test Scenarios | API Contract / Swagger, Design Reference, Screenshots, Notes |
 | `Bug` | Detailed Description, Steps to Reproduce, Expected Result, Actual Result, Environment | Screenshots / Logs, Regression / Test Scenario, API Contract, Design Reference, Notes |
-| `Story` | User Story, Detailed Description, Scope, Acceptance Criteria, Test Scenarios | API Contract / Swagger, Design Reference, Screenshots, Dependencies / Notes |
+| `Story` | User Story, Detailed Description, Scope, Acceptance Criteria, Test Scenarios (each in a coloured wiki panel) | API Contract / Swagger, Design Reference, Screenshots, Dependencies / Notes |
 
 ## Flow
 

package/pipeline/commands/multi-agent/setup/SKILL.md

@@ -157,9 +157,9 @@ Then, **whether they pasted or skipped**, run:
 node "$HOME/.claude/scripts/usage-register.mjs" --json
 ```
 
-If its JSON line says `"needsPersonalAccount":true`, offer once: `gh auth login`,
-or an SSH key on the personal account (the "Personal account" step in
-`$HOME/.claude/multi-agent-refs/features/usage-reporting.md`).
+If its JSON line says `"needsPersonalAccount":true`, ask once for the person's
+GitHub username (free text; Skip leaves reporting off) and run
+`node "$HOME/.claude/scripts/usage-register.mjs" --login <name> --json`.
 
 It maps whatever token exists and switches reporting on, and requests a
 per-machine write-only one when none resolves, so a machine that runs setup and

package/pipeline/commands/multi-agent/update/SKILL.md

@@ -139,9 +139,9 @@ and every later block that needs them starts by sourcing it.
    reporting off with one status line - never an error. Contract and the data it
    sends: `$HOME/.claude/multi-agent-refs/features/usage-reporting.md`.
 
-   If its JSON line says `"needsPersonalAccount":true`, offer once: `gh auth login`,
-   or an SSH key on the personal account (the "Personal account" step in
-   `$HOME/.claude/multi-agent-refs/features/usage-reporting.md`).
+   If its JSON line says `"needsPersonalAccount":true`, ask once for the person's
+   GitHub username (free text; Skip leaves reporting off) and run
+   `node "$HOME/.claude/scripts/usage-register.mjs" --login <name> --json`.
 
 6. **Tell the user what the update brought.** Read the notes, then write the summary yourself:
    ```bash

package/pipeline/lib/json-file-lock.mjs

@@ -20,7 +20,9 @@ import {
   chmodSync,
   linkSync,
   lstatSync,
+  mkdirSync,
   readFileSync,
+  readlinkSync,
   realpathSync,
   renameSync,
   rmSync,
@@ -28,7 +30,7 @@ import {
   unlinkSync,
   writeFileSync,
 } from "node:fs";
-import { basename, dirname, join } from "node:path";
+import { basename, dirname, join, resolve } from "node:path";
 import { readRegularJson } from "./regular-file.mjs";
 
 const DEFAULT_TIMEOUT_MS = 15_000;
@@ -140,11 +142,31 @@ export function withFileLockSync(
 export function writeJsonAtomicSync(path, data, { mode = 0o600, followSymlink = false } = {}) {
   let target = path;
   if (followSymlink) {
+    let link = false;
     try {
-      if (lstatSync(path).isSymbolicLink()) target = realpathSync(path);
+      link = lstatSync(path).isSymbolicLink();
     } catch {
       // Missing file: write the path as given.
     }
+    if (link) {
+      try {
+        target = realpathSync(path);
+      } catch {
+        // A chain whose last target does not exist yet: follow it to that
+        // target and create it, keeping every link.
+        for (let hops = 0; hops < 16; hops++) {
+          let next;
+          try {
+            next = lstatSync(target).isSymbolicLink();
+          } catch {
+            break;
+          }
+          if (!next) break;
+          target = resolve(dirname(target), readlinkSync(target));
+        }
+        mkdirSync(dirname(target), { recursive: true });
+      }
+    }
   }
   const tmp = join(dirname(target), `.${basename(target)}.${process.pid}.tmp`);
   rmSync(tmp, { force: true });

package/pipeline/multi-agent-refs/analysis/evidence.md

@@ -79,7 +79,7 @@ grep -rilE "$slugs" $WHITELIST --include="*.swift" --include="*.kt" --include="*
 
 If `wc -l < $CANDIDATES` exceeds 200, record `fetchWarnings += "feature-name too generic; candidate cap hit"` in `repoEvidence[<repo>]`.
 
-**Ranking the candidates (opt-in, `prefs.global.codeGraph.enabled`).** `head -200`
+**Ranking the candidates (`prefs.global.codeGraph.enabled`).** `head -200`
 truncates in grep's walk order, so the cap drops an arbitrary file rather than the
 least relevant one - the failure the warning above names and cannot fix. When a
 graph exists for the repo, rank the set first:

package/pipeline/multi-agent-refs/cross-cli-contract.md

@@ -117,6 +117,7 @@ it does not. Contracts: `features/exploratory-testing.md`,
 | Research modes and threads | `mode`, `recency`, `domains`, `sources`, `thread_id` on `research_ask`; `arxiv` and `fetch_content` on `research_search` | ≥ v3.20.0 |
 | Free-model delegation | `llm_delegate`, `llm_providers`; `ESCALATE_TO_CLAUDE`; the `multi-agent-toolkit-llm` CLI (`delegate`, `providers`, `probe`, `usage`) | ≥ v3.21.0 |
 | Related repositories | `repo_resolve`, `repo_grep`, `repo_read`, `repo_ls`, `repo_log`, `repo_find_keys`; `stale`, `not_found_at_sha` (`features/product-context.md`) | ≥ v3.22.1 |
+| Language-server answers over MCP | `code_references`, `code_definition`, `code_document_symbols`, `code_index_status` as JSON with structured content; `graph-confirm.mjs` reads them (`features/code-graph.md`) | ≥ v3.22.2 |
 
 ---
 

package/pipeline/multi-agent-refs/features/analysis-jira.md

@@ -118,6 +118,11 @@ its label is recorded in the ledger as `exists`, beside its key.
 | Current vs target | redesign rows that point at the story's section | the same, from the corporate redesign sub-sections |
 | Links | the analysis page, Figma URLs in the story's sections, Swagger/OpenAPI URLs in References | same |
 
+Each part sits in a coloured wiki panel with its `h3.` heading first: the user
+story in `{panel:borderColor=#d4d39e}`, the acceptance criteria in
+`{panel:borderColor=#d4a19e}`, current vs target and links in
+`{panel:borderColor=#9eb6d4}`. The `Sources:` line stays outside the panels.
+
 At most 8 criteria. What is missing stays missing and becomes a body warning
 (no user story, fewer than 2 criteria, no negative criterion); nothing is filled
 in. Every piece of document text passes `escapeJiraWiki()` before it is placed

package/pipeline/multi-agent-refs/features/code-graph.md

@@ -3,6 +3,8 @@
 <!-- toc -->
 - [Phase 1 Step 2.6  -  query before dispatching Explore](#phase-1-step-26---query-before-dispatching-explore)
 - [Impact of a change, not of a name](#impact-of-a-change-not-of-a-name)
+- [Who implements this](#who-implements-this)
+- [Confirming with a language server](#confirming-with-a-language-server)
 - [Phase 5 Step 3  -  refresh after the branch changed code](#phase-5-step-3---refresh-after-the-branch-changed-code)
 - [What the report answers that a file-level view cannot](#what-the-report-answers-that-a-file-level-view-cannot)
 - [The graph is drawable, and one place already asks for it](#the-graph-is-drawable-and-one-place-already-asks-for-it)
@@ -10,8 +12,8 @@
 
 A deterministic, LLM-free map of what a repo declares and what refers to what,
 written to `~/.claude/knowledge/<project>/code-graph.json`. Gated by
-`prefs.global.codeGraph.enabled` (default `false`); with it off, Phase 1 and
-Phase 5 behave exactly as they did before. Design, trade and measurements:
+`prefs.global.codeGraph.enabled` (default `true`); with it off, no graph is
+built or refreshed (a graph file already on disk is still read). Design, trade and measurements:
 `docs/adr/0010-own-code-graph.md`.
 
 ### Phase 1 Step 2.6  -  query before dispatching Explore
@@ -62,7 +64,8 @@ questions and lost narrowly to `grep -lw` on exact type names.
 `graph-affected --diff <base>` (or `<base>..<head>`, or `--diff-file <path>`)
 seeds the reverse walk from the change itself. Each hunk maps onto the
 innermost declaration it touches, through spans derived from indentation
-(`endLine`, schema 1.1.0); enclosing declarations are seeded too, because
+(`endLine`, schema 1.1.0; attribute and decorator lines above a declaration,
+multi-line ones included, belong to it); enclosing declarations are seeded too, because
 references point at types and a method alone has no dependents. The walk
 continues through what each dependent file declares, so the answer is the full
 blast radius to `--depth`, and the defining file is never reported as its own
@@ -79,6 +82,40 @@ reads the diff on its old side (`side: "old"`): a graph built on the base
 checkout maps a branch's diff correctly, and a deleted file still reaches its
 dependents.
 
+### Who implements this
+
+`inherits` edges (schema 1.2.0) run from a subtype to each supertype the graph
+defines once: a superclass, the protocols or interfaces it adopts (Swift and
+Kotlin `:` lists, Python bases, TypeScript `extends` / `implements`), and a
+conformance a Swift `extension` adds. `graph-affected "<Protocol>" --kind
+inherits --depth 1` lists its conformers; without `--kind` the walk follows
+them with every other dependency. Production code never gains an edge to a
+type a test file declares, so a fake named after a framework type cannot turn
+into a hub.
+
+### Confirming with a language server
+
+The graph joins by name, so a direct dependent can be a file that only uses
+the same word, and a dependent behind an ambiguous name is missing. Where the
+toolkit's `code_references` (≥ v3.22.2) has an index (Swift through sourcekit-lsp, Kotlin
+through kotlin-lsp), check the answer before a decision rests on it: call
+`code_references` with `file` and `symbol` for each changed type (at most five).
+With the Write tool, save the `graph-affected --json` answer as
+`$RUN_DIR/affected.json` and the `code_references` results as a JSON array in
+`$RUN_DIR/references.json` (`$RUN_DIR` is the run's log directory, where
+`agent-state.json` lives), then merge:
+
+```bash
+node $HOME/.claude/scripts/graph-confirm.mjs --affected "$RUN_DIR/affected.json" \
+  --references "$RUN_DIR/references.json" --root "$PROJECT_ROOT"
+```
+
+Each direct dependent comes back `confirmed`, `name-only` (a ready semantic
+index did not find it: treat it as a probable false positive) or `unchecked`
+(a deeper ring, or no usable index); `lspOnly` names files the server found
+that the graph missed. An answer with `indexReady: false` or `semantic: false`
+confirms and demotes nothing.
+
 Phase 3 Step 1.75 passes the graph to `diff-risk-score.mjs --graph`, which adds
 `dependents_reached`: the distinct non-test files two rings out, capped so a
 hub cannot outweigh a security path. No graph, no signal, nothing fails.