@mirnoorata/codexa 0.2.1 → 0.3.0

package/README.md

@@ -1,20 +1,55 @@
 # Codexa
 
-Codexa is a local codebase map for AI coding agents.
+Codexa is an edit-lifecycle governance layer for AI coding agents — plan
+conformance, drift review, and verification crediting — built on a local,
+deterministic codebase map.
 
 In plain English: it reads a repository, builds a compact index of the files,
-symbols, imports, tests, risks, and workflows it can prove, then gives Codex or
-another MCP client small evidence-backed packets before and after edits. It is
-meant to help an agent answer questions like:
+symbols, imports, tests, risks, and workflows it can prove, then gives Codex,
+Claude Code, or another MCP client small evidence-backed packets before and
+after edits. It is meant to help an agent answer questions like:
 
 - What should I read first?
 - What could this change break?
 - Which tests are relevant?
 - Did my final dirty tree match the plan I saved before editing?
+- Did the verification commands the agent reported actually prove anything?
 
 It is not an autonomous coding agent. It does not edit your source files through
 MCP. It is a context compiler, query server, and verification guide.
 
+## Why Codexa
+
+Three capabilities are deliberately hard to find elsewhere:
+
+- **A drift loop.** `change_plan` snapshots per-file hashes plus symbol and
+  risk baselines before editing; `post_edit_review` diffs the real dirty tree
+  against that plan afterwards, rename-aware. When no plan was saved, the
+  pre-edit hook saves an implicit baseline automatically, so the review always
+  has a pre-edit reference; an explicit `change_plan` upgrades it with planned
+  scope and tests. Blocking is opt-in: only reviews against an explicit plan
+  can surface a blocking verdict to the host — implicit baselines keep the
+  loop informational.
+- **A verification ledger.** Commands the agent reports are parsed against a
+  faithful POSIX-shell subset before earning coverage credit: `npm test ||
+  true` earns nothing, `tsc --help` is vetoed as non-compiling, `sh -c`
+  wrappers are unwrapped with ambiguity failing closed. Scope stated plainly:
+  this detects structural exit-masking in *reported* commands — it cannot
+  detect a wholesale fabricated report. The opt-in AutoVerify lane exists for
+  execution-backed evidence.
+- **A fail-closed eval.** The eval harness runs real `rg`/`git` baselines and
+  fails a scenario outright if the raw baseline does the job better. The
+  archived v0.2.0 release run passed 20/20 scenarios with packets averaging
+  0.66x the raw baseline output size — and the harness ships in this repo, so
+  you can re-run it yourself. See [Public Proof](#public-proof).
+
+Limits, stated up front: TypeScript/JavaScript and Python are the deep lanes
+(Rust/Go/Java are shallow; other languages get light file facts). Impact
+expansion caps at graph depth 3. The tested envelope is repos around the
+~50K-LOC scale of Codexa itself — expect slower cold indexing and shallower
+ranking on large monorepos. Everything runs locally: zero API keys and zero
+network calls in the core paths.
+
 ## Maintainer Expectations
 
 Codexa is maintained by one person, in spare time, with a deliberately narrow
@@ -56,21 +91,33 @@ npm link
 Wire Codexa into another repository:
 
 ```bash
-codexa init /path/to/project
+codexa init /path/to/project            # Codex CLI: .codex/config.toml + hooks
+codexa init /path/to/project --claude   # also writes a repo-root .mcp.json for Claude Code
 codexa session-start /path/to/project
 ```
 
 After `codexa init`, the target repository gets a repo-local `.codex/config.toml`
-entry that lets Codex discover the Codexa MCP server automatically. Useful flags:
-`--tools core` exposes only the primary-loop tools (plus `impact`/`freshness`) via an
-`enabled_tools` allowlist to cut per-turn schema token cost (confirm your Codex CLI
-supports `enabled_tools` first), `--agents-md` (opt-in) writes a managed Codexa
-workflow block into the repo's `AGENTS.md` for Codex, and `--claude-md` (opt-in)
-writes the same managed block into `CLAUDE.md` for Claude Code. The region between
-the `<!-- >>> codexa managed -->` / `<!-- <<< codexa managed -->` markers is
-reserved: Codexa replaces it in place on every re-run (so the block stays current)
-and never edits anything outside it. Unbalanced or malformed markers abort the
-write instead of silently truncating the file.
+entry that lets Codex discover the Codexa MCP server automatically, and with
+`--claude` a repo-root `.mcp.json` so Claude Code discovers the same server
+(only the codexa entry is managed; other servers in an existing `.mcp.json`
+are preserved, and malformed JSON aborts the write). When init runs from an
+evictable npx cache, generated configs pin `npx -y @mirnoorata/codexa@<version>`
+instead of the cache path so they keep working after a cache prune.
+
+Useful flags: the default tool profile for fresh installs is `core` — only the
+primary-loop tools (plus `impact`/`freshness`) are exposed, which cuts per-turn
+schema token cost; `--tools full` exposes all 20 tools, and re-running plain
+`codexa init` preserves whichever profile the repo already uses. On the Codex
+side the core profile relies on Codex CLI honoring `enabled_tools` (older
+versions ignore the key and simply expose every tool); the Claude Code
+`.mcp.json` path filters server-side via `serve --tools core` and needs no
+client support. `--agents-md` (opt-in) writes a managed
+Codexa workflow block into the repo's `AGENTS.md` for Codex, and `--claude-md`
+(opt-in) writes the same managed block into `CLAUDE.md` for Claude Code. The
+region between the `<!-- >>> codexa managed -->` / `<!-- <<< codexa managed -->`
+markers is reserved: Codexa replaces it in place on every re-run (so the block
+stays current) and never edits anything outside it. Unbalanced or malformed
+markers abort the write instead of silently truncating the file.
 
 The installed command is `codexa`, and the server can also run ad hoc:
 
@@ -86,20 +133,30 @@ Codexa is also listed in the official MCP registry as
 Codexa is deterministic and model-agnostic — its core indexing, ranking, and
 query paths call no model and need no API keys, so it serves the same
 evidence-backed context to any agent host that speaks MCP: the OpenAI Codex CLI
-(repo-local `.codex/config.toml`), Claude Code (the bundled plugin under
-`integrations/claude-code/`, plus `--claude-md` steering), and any client that
-discovers it through the MCP registry. There is no per-model integration to do —
-the model lives in the host, and Codexa is the host's context server. (The one
-exception is the opt-in, off-by-default semantic lane, which can call a configured
-embedding provider such as OpenAI — see [Optional Lanes](#optional-lanes).)
+(repo-local `.codex/config.toml`), Claude Code (`codexa init --claude` writes a
+repo-root `.mcp.json`; the bundled plugin under `integrations/claude-code/`
+ships its own MCP server entry, hooks that auto-save the pre-edit baseline and
+surface blocking drift verdicts to the model, and slash commands; `--claude-md`
+adds workflow steering — pick the plugin **or** `init --claude` for MCP wiring,
+not both, or Claude Code will register the codexa server twice), and any client
+that discovers it through the MCP registry. There is no per-model integration to do — the model lives in the
+host, and Codexa is the host's context server. (The one exception is the
+opt-in, off-by-default semantic lane, which can call a configured embedding
+provider such as OpenAI — see [Optional Lanes](#optional-lanes).)
 
 Token discipline is built in: every tool description states its typical output
 cost, structured results are budget-compacted with truncation records naming
 dropped fields, hosts with small MCP result limits can set
 `CODEXA_MCP_STRUCTURED_BUDGET_BYTES`, and the big retrieval tools accept
-`responseFormat: "concise"` for a summary-tier packet. Because the budget caps
-tokens rather than dollars, the savings scale with the host model's price — they
-matter most on frontier-tier models.
+`responseFormat: "concise"` for a summary-tier packet that compacts both the
+structured payload and the text block. The `tools/list` surface is budgeted
+too: the per-tool output schema defaults to a compact top-level contract
+(measured on this repo: 123KB -> 54KB for the full 20-tool surface, 21KB with
+the core profile; `CODEXA_MCP_OUTPUT_SCHEMA=full` restores the deep schema),
+and `codexa serve --tools core` registers only the primary-loop tools for
+hosts without a client-side allowlist. Because the budget caps tokens rather
+than dollars, the savings scale with the host model's price — they matter most
+on frontier-tier models.
 
 ### Managed cloud agents
 
@@ -139,6 +196,10 @@ Use Codexa as a guardrail around code changes:
 4. Save a change plan before non-trivial edits.
    `change_plan` with `saveSnapshot=true`, or CLI
    `change-plan --save-snapshot`, records the intended scope and test plan.
+   If you skip this step, the pre-edit hooks save an implicit baseline of the
+   dirty tree on the first edit — the review still gets changed-since-baseline
+   and head-drift accuracy, but only an explicit plan enables unplanned-scope
+   drift detection.
 
 5. Review after editing.
    `post_edit_review` / `post-edit-review` compares the actual dirty tree with
@@ -187,7 +248,7 @@ writes are allowed; source-file mutation is not exposed through MCP tools.
 
 | Command | Use it for |
 | --- | --- |
-| `codexa init <repo>` | Write repo-local Codex MCP config/hooks and index the repo (`--tools core` for a lean tool allowlist, `--agents-md` for an AGENTS.md workflow block). |
+| `codexa init <repo>` | Write repo-local Codex MCP config/hooks and index the repo (`--claude` for a repo-root Claude Code `.mcp.json`, `--tools full` to expose every tool, `--agents-md` for an AGENTS.md workflow block). |
 | `codexa session-start <repo>` | Print cheap startup status and the automatic-use loop. |
 | `codexa index <repo>` | Build `.codex/codebase/` artifacts once. |
 | `codexa watch <repo>` | Keep artifacts fresh during active edit sessions. |
@@ -215,7 +276,7 @@ writes are allowed; source-file mutation is not exposed through MCP tools.
 | `codexa eval <repo>` | Run structured retrieval/verification benchmark scenarios. |
 | `codexa github-sync-check <repo>` | Diagnose GitHub source sync readiness. |
 | `codexa github-release <repo>` | Create release notes, tags, and GitHub Release entries. |
-| `codexa serve <repo>` | Start the MCP context server over stdio. |
+| `codexa serve <repo>` | Start the MCP context server over stdio (`--tools core` registers only the primary-loop tools). |
 | `codexa serve <repo> --transport http --host 127.0.0.1 --port 8729` | Start loopback-only HTTP MCP. |
 
 Most context commands auto-refresh stale or missing Codexa artifacts before
@@ -471,7 +532,9 @@ scrubbed environments and write reports under `.codex/static-analysis/`.
 
 `codexa init` writes advisory hooks when Codex hooks are available:
 
-- `hook-pre-edit` reminds the agent to save a change-plan snapshot.
+- `hook-pre-edit` saves an implicit pre-edit baseline when no change-plan
+  snapshot exists (and reminds the agent that an explicit `change_plan`
+  upgrades it with planned scope and tests).
 - `hook-post-edit` runs a bounded post-edit review after edits.
 
 AutoVerify command execution is disabled unless user-owned autonomy is
@@ -569,8 +632,9 @@ node dist/cli.js eval /path/to/project --suite all --seed codexa-v1-benchmark
 The eval scores structured query data, not prose. It compares Codexa packets
 against raw `rg`/`git status` baselines, tracks recall/precision/test
 recommendations/context size, and can run ranking experiments without changing
-production ranking. A scenario fails outright if the raw-grep baseline does the
-job better.
+production ranking. The claim is deliberately falsifiable: a scenario fails
+outright if the raw-grep baseline does the job better, and the harness runs in
+CI — so "beats grep on its scenarios" is a gate, not a one-off benchmark.
 
 Measured results for v0.2.0 (seed `codexa-v020-release`, full suite, archived
 in [`reports/benchmarks/v0.2.0-eval.json`](reports/benchmarks/v0.2.0-eval.json)):

package/dist/cache-lock.js

@@ -4,6 +4,11 @@ import path from "node:path";
 import { setTimeout as sleep } from "node:timers/promises";
 const DEFAULT_LOCK_STALE_MS = 120_000;
 const DEFAULT_LOCK_TIMEOUT_MS = 30_000;
+// A live-looking owner is never stolen for a transient stall, but if its
+// heartbeat freezes for this multiple of staleMs it is treated as unrecoverable
+// (wedged holder, or a recycled PID whose new owner does not update this lock's
+// heartbeat) and reclaimed. Far longer than any plausible GC/swap/SIGSTOP pause.
+const HARD_RECLAIM_HEARTBEAT_MULTIPLIER = 8;
 export async function acquireCacheLock(options) {
     const repoRoot = path.resolve(options.repoRoot);
     const lockDir = path.isAbsolute(options.lockDir) ? options.lockDir : path.join(repoRoot, options.lockDir);
@@ -26,8 +31,7 @@ export async function acquireCacheLock(options) {
             await fs.mkdir(lockDir, { recursive: false });
             await writeLockOwner(ownerPath, owner);
             const heartbeat = setInterval(() => {
-                owner.heartbeatAt = new Date().toISOString();
-                void writeLockOwner(ownerPath, owner).catch(() => undefined);
+                void renewLockOwner(ownerPath, owner).catch(() => undefined);
             }, Math.max(10_000, Math.floor(staleMs / 3)));
             heartbeat.unref?.();
             return async () => {
@@ -55,13 +59,33 @@ async function removeStaleLock(lockDir, staleMs) {
         const stat = await fs.stat(lockDir);
         const owner = await readLockOwner(ownerPath);
         if (owner) {
+            // Reclaim a lock whose owning process is provably gone. A live process
+            // with a briefly stale heartbeat may merely be stalled (GC, swap,
+            // SIGSTOP, blocked event loop) and resume into its critical section;
+            // stealing it would let two processes hold the lock — the corruption
+            // this lock exists to prevent — so do not reclaim it for a short stall.
             if (!(await lockOwnerStillRunning(owner))) {
-                return claimAndRemoveOwnerLock(lockDir, owner, () => true);
+                return claimAndRemoveOwnerLock(lockDir, owner);
             }
-            if (lockOwnerHeartbeatFresh(owner, staleMs)) {
-                return false;
+            // ...but a lock whose owner.json has not been rewritten far beyond any
+            // plausible pause means the holder is wedged, or the PID was recycled by an
+            // unrelated process not updating this lock. Freshness is measured by the
+            // owner.json file mtime, which every heartbeat bumps (write-temp + rename):
+            // the filesystem sets it on actual write activity, independent of the
+            // holder's clock or heartbeat *content*, so a live, actively-heart-beating
+            // holder is never stolen while a frozen one is reclaimed even if its content
+            // timestamp is future-dated or corrupt. Double-check at claim time so a
+            // holder that refreshed just before our rename keeps the lock.
+            const ceilingMs = staleMs * HARD_RECLAIM_HEARTBEAT_MULTIPLIER;
+            const ownerMtimeMs = await fileMtimeMs(ownerPath);
+            if (ownerMtimeMs !== undefined && Date.now() - ownerMtimeMs > ceilingMs) {
+                const reclaimed = await claimAndRemoveOwnerLock(lockDir, owner, ceilingMs);
+                if (reclaimed) {
+                    console.error(`codexa: reclaimed a stuck cache lock (owner pid ${owner.pid}, not refreshed > ${Math.round(ceilingMs / 1000)}s): ${lockDir}`);
+                }
+                return reclaimed;
             }
-            return claimAndRemoveOwnerLock(lockDir, owner, (claimed) => !lockOwnerHeartbeatFresh(claimed, staleMs));
+            return false;
         }
         if (Date.now() - stat.mtimeMs <= staleMs) {
             return false;
@@ -76,7 +100,7 @@ async function removeStaleLock(lockDir, staleMs) {
         return false;
     }
 }
-async function claimAndRemoveOwnerLock(lockDir, expectedOwner, shouldRemove) {
+async function claimAndRemoveOwnerLock(lockDir, expectedOwner, ceilingMs) {
     const ownerPath = path.join(lockDir, "owner.json");
     const claimedOwnerPath = path.join(lockDir, `owner.json.claimed-${process.pid}-${randomUUID()}`);
     try {
@@ -90,8 +114,27 @@ async function claimAndRemoveOwnerLock(lockDir, expectedOwner, shouldRemove) {
         await restoreClaimedOwner(ownerPath, claimedOwnerPath);
         return false;
     }
-    if (!shouldRemove(claimed)) {
-        await restoreClaimedOwner(ownerPath, claimedOwnerPath);
+    // For a ceiling reclaim, re-confirm against the claimed file's preserved mtime
+    // (rename keeps it) that the holder really did not refresh within the ceiling.
+    // A holder that rewrote owner.json just before our rename shows a fresh mtime
+    // and must be left alone. The dead-process path passes no ceiling and removes
+    // unconditionally after the token check.
+    if (ceilingMs !== undefined) {
+        const claimedMtimeMs = await fileMtimeMs(claimedOwnerPath);
+        if (claimedMtimeMs === undefined || Date.now() - claimedMtimeMs <= ceilingMs) {
+            await restoreClaimedOwner(ownerPath, claimedOwnerPath);
+            return false;
+        }
+    }
+    // TOCTOU guard: the claim renamed owner.json aside, so ownerPath is now absent.
+    // A holder we mean to reclaim is wedged/dead and writes no heartbeats, so it
+    // stays absent. If a fresh owner.json has reappeared, the holder resumed and
+    // recreated it between the claim and now — abort rather than fs.rm the live
+    // holder's lock dir (which would let two processes hold the lock). The atomic
+    // rename of owner.json is the only thing acting as the claim token; a heartbeat
+    // written after it is reliably observed here because rename is atomic.
+    if (await readLockOwner(ownerPath)) {
+        await fs.rm(claimedOwnerPath, { force: true }).catch(() => undefined);
         return false;
     }
     await fs.rm(lockDir, { recursive: true, force: true });
@@ -109,15 +152,32 @@ async function restoreClaimedOwner(ownerPath, claimedOwnerPath) {
     }
     await fs.rm(claimedOwnerPath, { force: true }).catch(() => undefined);
 }
-function lockOwnerHeartbeatFresh(owner, staleMs) {
-    const heartbeatMs = Date.parse(owner.heartbeatAt || owner.startedAt);
-    return Number.isFinite(heartbeatMs) && Date.now() - heartbeatMs <= staleMs;
+async function fileMtimeMs(filePath) {
+    try {
+        return (await fs.stat(filePath)).mtimeMs;
+    }
+    catch {
+        return undefined;
+    }
 }
 async function writeLockOwner(ownerPath, owner) {
     const temp = `${ownerPath}.${process.pid}.${owner.token}.tmp`;
     await fs.writeFile(temp, `${JSON.stringify(owner)}\n`, "utf8");
     await fs.rename(temp, ownerPath);
 }
+async function renewLockOwner(ownerPath, owner) {
+    // Before renewing, confirm we still own the lock. If owner.json is gone (a
+    // reclaimer renamed it aside to claim a wedged lock) or now holds a different
+    // token, stop renewing: recreating owner.json would race the reclaimer's
+    // pending directory removal and let two processes hold the lock. Combined with
+    // the reclaimer's post-claim live re-read, this closes the resume window.
+    const current = await readLockOwner(ownerPath);
+    if (!current || current.token !== owner.token) {
+        return;
+    }
+    owner.heartbeatAt = new Date().toISOString();
+    await writeLockOwner(ownerPath, owner);
+}
 async function readLockOwner(ownerPath) {
     try {
         const parsed = JSON.parse(await fs.readFile(ownerPath, "utf8"));

package/dist/cache-lock.js.map

@@ -1 +1 @@
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package/dist/cli/hooks.js

@@ -3,6 +3,7 @@ import path from "node:path";
 import { effectiveAutonomyMode } from "../autonomy.js";
 import { runAutoVerifyForPostEdit, autoVerifyPolicySignature, sanitizeAutoVerifyText } from "../autoverify.js";
 import { acquireCacheLock } from "../cache-lock.js";
+import { saveImplicitBaselineSnapshot } from "../implicit-baseline.js";
 import { getFreshness } from "../indexer.js";
 import { resolveMcpRepoRoot, shouldPreferConfiguredRepoRoot } from "../mcp-repo-root.js";
 import { loadPostEditHookReviewState, postEditHookReviewSignature, recordCodexaHookEvent, savePostEditHookReviewState } from "../post-edit-outcomes.js";
@@ -12,13 +13,17 @@ export async function runPreEditHook(repo) {
     const configuredRoot = path.resolve(repo);
     await runAdvisoryHook(configuredRoot, "pre-edit", "change-plan snapshot check", async () => {
         const { activeRepoRoot } = await resolveHookRepoRoots(repo);
-        const snapshot = await loadTaskSnapshot(activeRepoRoot);
-        if (!snapshot.snapshot) {
-            console.log("Codexa: no change-plan snapshot is available. For code edits, call change_plan with saveSnapshot=true before editing when the task is non-trivial.");
-            return { status: "skipped", reason: "missing-change-plan-snapshot", taskId: snapshot.latestTaskId };
+        const baseline = await saveImplicitBaselineSnapshot(activeRepoRoot);
+        if (baseline.status === "existing-snapshot") {
+            console.log(`Codexa: change-plan snapshot ready (${baseline.taskId}). After edits, post_edit_review will compare planned vs actual work.`);
+            return { status: "ok", reason: "snapshot-ready", taskId: baseline.taskId };
         }
-        console.log(`Codexa: change-plan snapshot ready (${snapshot.snapshot.taskId}). After edits, post_edit_review will compare planned vs actual work.`);
-        return { status: "ok", reason: "snapshot-ready", taskId: snapshot.snapshot.taskId };
+        if (baseline.status === "saved") {
+            console.log(`Codexa: saved an implicit pre-edit baseline (${baseline.taskId}); post_edit_review will diff the final tree against it. Call change_plan with saveSnapshot=true to declare planned scope and tests.`);
+            return { status: "ok", reason: "implicit-baseline-saved", taskId: baseline.taskId };
+        }
+        console.log(`Codexa: no change-plan snapshot is available${baseline.reason ? ` (${baseline.reason})` : ""}. For code edits, call change_plan with saveSnapshot=true before editing when the task is non-trivial.`);
+        return { status: "skipped", reason: baseline.reason ?? "missing-change-plan-snapshot", taskId: baseline.latestTaskId };
     });
 }
 export async function runPostEditHook(repo) {

package/dist/cli/hooks.js.map

@@ -1 +1 @@
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package/dist/cli.js

@@ -38,9 +38,10 @@ program
     .option("--no-hooks", "do not write hooks.json")
     .option("--index", "index the repository immediately", true)
     .option("--no-index", "only write Codex config and hooks")
-    .option("--tools <profile>", "MCP tool exposure profile: core (primary loop only, cheaper per turn) or full", parseToolProfile, "full")
+    .option("--tools <profile>", "MCP tool exposure profile: core (primary loop, cheaper per turn) or full; defaults to the repo's existing profile, else core", parseToolProfile)
     .option("--agents-md", "write a managed Codexa workflow block into the repo's AGENTS.md (Codex)", false)
     .option("--claude-md", "write a managed Codexa workflow block into the repo's CLAUDE.md (Claude Code)", false)
+    .option("--claude", "write the codexa MCP server entry into the repo's .mcp.json for Claude Code", false)
     .description("Initialize Codexa for a project so future Codex sessions discover it automatically.")
     .action(async (repo, opts) => {
     const result = await initializeProject(repo, {
@@ -51,7 +52,8 @@ program
         serverName: opts.serverName,
         toolProfile: opts.tools,
         agentsMd: opts.agentsMd,
-        claudeMd: opts.claudeMd
+        claudeMd: opts.claudeMd,
+        claude: opts.claude
     });
     console.log(`Codexa initialized for ${result.repoRoot}`);
     console.log(`Config: ${result.configPath}`);
@@ -64,6 +66,12 @@ program
     if (result.claudeMdPath) {
         console.log(`CLAUDE.md: ${result.claudeMdPath}`);
     }
+    if (result.claudeMcpPath) {
+        console.log(`Claude Code MCP config: ${result.claudeMcpPath}`);
+    }
+    if (result.launchNote) {
+        console.log(result.launchNote);
+    }
     console.log(`MCP server: ${result.serverName}`);
     if (result.indexed) {
         console.log(`Indexed ${result.indexed.files} files, ${result.indexed.symbols} symbols, ${result.indexed.usageSites} usage sites.`);
@@ -101,7 +109,7 @@ program
 program
     .command("hook-pre-edit")
     .argument("<repo>", "repository root")
-    .description("Cheap hook helper that reminds Codex when no change-plan snapshot exists before an edit.")
+    .description("Cheap hook helper that saves an implicit pre-edit baseline when no change-plan snapshot exists before an edit.")
     .action(async (repo) => {
     await runPreEditHook(repo);
 });
@@ -779,6 +787,7 @@ program
     .option("--auto-refresh", "refresh a stale or missing index before answering MCP context tools", true)
     .option("--no-auto-refresh", "do not refresh a stale or missing index before answering MCP context tools")
     .option("--session-memory <mode>", "auto-record MCP session memory: auto or off", parseSessionMemoryMode, "auto")
+    .option("--tools <profile>", "server-side tool exposure: core (primary loop only, cheaper per turn) or full", parseToolProfile, "full")
     .option("--workspace-focus-file <path>", "workspace focus file to consult when <repo> is a workspace launch root")
     .option("--workspace-session <id>", "active WORKING.md session row to prefer when <repo> is a workspace launch root")
     .option("--transport <transport>", "MCP transport: stdio or http", parseMcpTransport, "stdio")
@@ -788,7 +797,7 @@ program
     .description("Start the MCP server over stdio by default, or Streamable HTTP with --transport http.")
     .action(async (repo, opts) => {
     const resolved = path.resolve(repo);
-    const queryOptions = queryOptionsFromCli(opts);
+    const queryOptions = { ...queryOptionsFromCli(opts), toolProfile: opts.tools };
     if (opts.transport === "http") {
         await serveMcpHttp(resolved, queryOptions, { host: opts.host, port: opts.port, endpoint: opts.endpoint });
         return;