@mindrian_os/cli 1.13.0-beta.10 → 1.13.0-beta.43

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (590) hide show
  1. package/CHANGELOG.md +340 -13
  2. package/README.md +76 -579
  3. package/bin/cli.js +166 -40
  4. package/lib/core/active-plugin-root.cjs +207 -0
  5. package/package.json +7 -13
  6. package/.claude-plugin/plugin.json +0 -21
  7. package/.mcp.json +0 -9
  8. package/agents/brain-query.md +0 -80
  9. package/agents/framework-runner.md +0 -237
  10. package/agents/grading.md +0 -188
  11. package/agents/investor.md +0 -128
  12. package/agents/larry-extended.md +0 -135
  13. package/agents/opportunity-scanner.md +0 -91
  14. package/agents/persona-analyst.md +0 -132
  15. package/agents/research.md +0 -89
  16. package/agents/reverse-salient-agent.md +0 -27
  17. package/bin/mindrian-mcp-server.cjs +0 -182
  18. package/bin/mindrian-tools.cjs +0 -765
  19. package/commands/act.md +0 -433
  20. package/commands/admin.md +0 -404
  21. package/commands/analyze-needs.md +0 -36
  22. package/commands/analyze-systems.md +0 -33
  23. package/commands/analyze-timing.md +0 -36
  24. package/commands/auto-explore.md +0 -64
  25. package/commands/beautiful-question.md +0 -34
  26. package/commands/brain-derive.md +0 -78
  27. package/commands/build-knowledge.md +0 -36
  28. package/commands/build-thesis.md +0 -40
  29. package/commands/causal.md +0 -228
  30. package/commands/challenge-assumptions.md +0 -33
  31. package/commands/compare-ventures.md +0 -77
  32. package/commands/dashboard.md +0 -110
  33. package/commands/deep-grade.md +0 -76
  34. package/commands/diagnose.md +0 -52
  35. package/commands/diagnostics.md +0 -145
  36. package/commands/doctor.md +0 -151
  37. package/commands/dominant-designs.md +0 -34
  38. package/commands/explain-decision.md +0 -87
  39. package/commands/explore-domains.md +0 -36
  40. package/commands/explore-futures.md +0 -34
  41. package/commands/explore-trends.md +0 -36
  42. package/commands/export.md +0 -103
  43. package/commands/file-meeting.md +0 -724
  44. package/commands/find-analogies.md +0 -182
  45. package/commands/find-bottlenecks.md +0 -56
  46. package/commands/find-connections.md +0 -70
  47. package/commands/funding.md +0 -81
  48. package/commands/grade.md +0 -197
  49. package/commands/graph.md +0 -128
  50. package/commands/hat-briefing.md +0 -119
  51. package/commands/heal.md +0 -196
  52. package/commands/help.md +0 -399
  53. package/commands/hmi-status.md +0 -172
  54. package/commands/jtbd.md +0 -241
  55. package/commands/leadership.md +0 -73
  56. package/commands/lean-canvas.md +0 -34
  57. package/commands/macro-trends.md +0 -34
  58. package/commands/map-unknowns.md +0 -34
  59. package/commands/memory.md +0 -173
  60. package/commands/models.md +0 -175
  61. package/commands/mos-reason.md +0 -279
  62. package/commands/mullins.md +0 -114
  63. package/commands/new-project.md +0 -481
  64. package/commands/onboard.md +0 -434
  65. package/commands/operator.md +0 -149
  66. package/commands/opportunities.md +0 -144
  67. package/commands/organize.md +0 -497
  68. package/commands/persona.md +0 -192
  69. package/commands/pipeline.md +0 -106
  70. package/commands/present.md +0 -91
  71. package/commands/publish.md +0 -201
  72. package/commands/query.md +0 -124
  73. package/commands/radar.md +0 -72
  74. package/commands/reanalyze.md +0 -91
  75. package/commands/research.md +0 -190
  76. package/commands/room.md +0 -352
  77. package/commands/rooms.md +0 -598
  78. package/commands/root-cause.md +0 -34
  79. package/commands/rs-experts.md +0 -79
  80. package/commands/rs-explain.md +0 -94
  81. package/commands/rs-fetch.md +0 -88
  82. package/commands/rs-thesis.md +0 -79
  83. package/commands/scenario-plan.md +0 -34
  84. package/commands/scheduled-tasks.md +0 -285
  85. package/commands/score-innovation.md +0 -37
  86. package/commands/scout.md +0 -239
  87. package/commands/setup.md +0 -618
  88. package/commands/snapshot.md +0 -147
  89. package/commands/speakers.md +0 -84
  90. package/commands/splash.md +0 -28
  91. package/commands/status.md +0 -75
  92. package/commands/structure-argument.md +0 -36
  93. package/commands/suggest-next.md +0 -74
  94. package/commands/systems-thinking.md +0 -34
  95. package/commands/think-hats.md +0 -36
  96. package/commands/update.md +0 -181
  97. package/commands/user-needs.md +0 -34
  98. package/commands/validate.md +0 -34
  99. package/commands/value-proposition.md +0 -55
  100. package/commands/vault.md +0 -180
  101. package/commands/visualize.md +0 -52
  102. package/commands/whitespace.md +0 -501
  103. package/commands/wiki.md +0 -69
  104. package/hooks/hooks.json +0 -381
  105. package/hooks/run-hook.cmd +0 -64
  106. package/lib/__init__.py +0 -0
  107. package/lib/__pycache__/__init__.cpython-312.pyc +0 -0
  108. package/lib/agents/auto-explore-agent.cjs +0 -1043
  109. package/lib/agents/reverse-salient-agent.cjs +0 -679
  110. package/lib/agents/tension-hook-agent.cjs +0 -544
  111. package/lib/chat/chat-context.js +0 -185
  112. package/lib/chat/chat-panel.js +0 -721
  113. package/lib/chat/fabric-chat.cjs +0 -288
  114. package/lib/chat/generative-tools.js +0 -219
  115. package/lib/conversation/ROOM.md +0 -39
  116. package/lib/conversation/classifier-rules.json +0 -38
  117. package/lib/conversation/classifier.cjs +0 -264
  118. package/lib/conversation/operator.cjs +0 -287
  119. package/lib/copy/115-spec-strings.cjs +0 -55
  120. package/lib/core/__init__.py +0 -0
  121. package/lib/core/__nav-stub.cjs +0 -14
  122. package/lib/core/__pycache__/__init__.cpython-312.pyc +0 -0
  123. package/lib/core/__pycache__/rs-math.cpython-312.pyc +0 -0
  124. package/lib/core/__pycache__/rs_cache.cpython-312.pyc +0 -0
  125. package/lib/core/__pycache__/rs_corpus.cpython-312.pyc +0 -0
  126. package/lib/core/__pycache__/rs_hybrid.cpython-312.pyc +0 -0
  127. package/lib/core/__pycache__/rs_math.cpython-312.pyc +0 -0
  128. package/lib/core/__pycache__/rs_rooms.cpython-312.pyc +0 -0
  129. package/lib/core/artifact-id.cjs +0 -148
  130. package/lib/core/asset-ops.cjs +0 -151
  131. package/lib/core/auto-commit-throttle.cjs +0 -129
  132. package/lib/core/bearer-token.cjs +0 -199
  133. package/lib/core/brain-client.cjs +0 -865
  134. package/lib/core/brain-derivation-prompts.cjs +0 -326
  135. package/lib/core/brain-derivation-queue.cjs +0 -431
  136. package/lib/core/brain-derivation.cjs +0 -580
  137. package/lib/core/brain-md-schema.cjs +0 -528
  138. package/lib/core/brain-md-staleness.cjs +0 -357
  139. package/lib/core/brain-response-sanitize.cjs +0 -188
  140. package/lib/core/bridge-writer.cjs +0 -477
  141. package/lib/core/chat-context-builder.cjs +0 -253
  142. package/lib/core/cross-room-aggregator.cjs +0 -762
  143. package/lib/core/daily-briefing.cjs +0 -438
  144. package/lib/core/decision-capture.cjs +0 -618
  145. package/lib/core/deep-links.cjs +0 -82
  146. package/lib/core/dispatch-optimizer.cjs +0 -354
  147. package/lib/core/dual-path-detector.cjs +0 -84
  148. package/lib/core/dual-path-detector.test.cjs +0 -334
  149. package/lib/core/exports-log.cjs +0 -79
  150. package/lib/core/feynman-minto-invariants.cjs +0 -605
  151. package/lib/core/folder-memory-async.cjs +0 -338
  152. package/lib/core/folder-memory-shared.cjs +0 -890
  153. package/lib/core/folder-memory.cjs +0 -416
  154. package/lib/core/framework-chain-composer.cjs +0 -411
  155. package/lib/core/frontmatter-schemas.cjs +0 -330
  156. package/lib/core/git-ops.cjs +0 -141
  157. package/lib/core/graph-ops.cjs +0 -258
  158. package/lib/core/hat-persistence.cjs +0 -362
  159. package/lib/core/index.cjs +0 -60
  160. package/lib/core/integration-registry.cjs +0 -232
  161. package/lib/core/intelligence-cascade.cjs +0 -661
  162. package/lib/core/lazygraph-ops.cjs +0 -1057
  163. package/lib/core/lru-cache.cjs +0 -139
  164. package/lib/core/mcp-profiles.cjs +0 -182
  165. package/lib/core/meeting-ops.cjs +0 -54
  166. package/lib/core/memory-ops.cjs +0 -600
  167. package/lib/core/migrations/ROOM.md +0 -33
  168. package/lib/core/migrations/phase-109-nodes-provenance.cjs +0 -339
  169. package/lib/core/migrations/phase-109-session-focus.cjs +0 -99
  170. package/lib/core/model-profiles.cjs +0 -246
  171. package/lib/core/mullins-scaffold.cjs +0 -160
  172. package/lib/core/nav-dial.cjs +0 -316
  173. package/lib/core/navigation/ROOM.md +0 -15
  174. package/lib/core/navigation/explanation.cjs +0 -43
  175. package/lib/core/navigation/focus.cjs +0 -135
  176. package/lib/core/navigation/ingestion.cjs +0 -82
  177. package/lib/core/navigation/insights.cjs +0 -350
  178. package/lib/core/navigation/memory-events.cjs +0 -118
  179. package/lib/core/navigation/neighborhood.cjs +0 -78
  180. package/lib/core/navigation/packet.cjs +0 -182
  181. package/lib/core/navigation/room-home.cjs +0 -127
  182. package/lib/core/navigation/transitions.cjs +0 -82
  183. package/lib/core/navigation-engine-shared.cjs +0 -242
  184. package/lib/core/navigation-engine.cjs +0 -664
  185. package/lib/core/navigation.cjs +0 -60
  186. package/lib/core/nl-graph-queries.cjs +0 -164
  187. package/lib/core/offer-presenter.cjs +0 -406
  188. package/lib/core/opportunity-extractor.cjs +0 -183
  189. package/lib/core/opportunity-ops.cjs +0 -1371
  190. package/lib/core/persona-ops.cjs +0 -537
  191. package/lib/core/persona-taxonomy.cjs +0 -190
  192. package/lib/core/platform-gates.cjs +0 -120
  193. package/lib/core/platform.cjs +0 -257
  194. package/lib/core/proactive-intelligence.cjs +0 -528
  195. package/lib/core/problem-type-router.cjs +0 -315
  196. package/lib/core/reasoning-ops.cjs +0 -639
  197. package/lib/core/reverse-salient-persona-suffix.cjs +0 -115
  198. package/lib/core/room-classifier-strict-mode.cjs +0 -229
  199. package/lib/core/room-db.cjs +0 -127
  200. package/lib/core/room-ops-async.cjs +0 -92
  201. package/lib/core/room-ops-shared.cjs +0 -64
  202. package/lib/core/room-ops-sync.cjs +0 -70
  203. package/lib/core/room-ops.cjs +0 -32
  204. package/lib/core/room-type-detector.cjs +0 -386
  205. package/lib/core/rs-brain-substrate-prompts.cjs +0 -129
  206. package/lib/core/rs-brain-substrate.cjs +0 -570
  207. package/lib/core/rs-breakthrough-scorer.cjs +0 -255
  208. package/lib/core/rs-canon-violations.cjs +0 -82
  209. package/lib/core/rs-chain-feeder.cjs +0 -343
  210. package/lib/core/rs-commercial-assessor.cjs +0 -280
  211. package/lib/core/rs-differential-scorer.cjs +0 -376
  212. package/lib/core/rs-domain-analyzer.cjs +0 -385
  213. package/lib/core/rs-egress-prompts.cjs +0 -113
  214. package/lib/core/rs-egress-telemetry.cjs +0 -225
  215. package/lib/core/rs-egress-violations.cjs +0 -53
  216. package/lib/core/rs-expert-mapper.cjs +0 -467
  217. package/lib/core/rs-fetcher-academic.cjs +0 -697
  218. package/lib/core/rs-fetcher-experts.cjs +0 -314
  219. package/lib/core/rs-fetcher-industry.cjs +0 -731
  220. package/lib/core/rs-fetcher-patents.cjs +0 -564
  221. package/lib/core/rs-innovation-classifier.cjs +0 -194
  222. package/lib/core/rs-mind-map.cjs +0 -656
  223. package/lib/core/rs-neo4j-writer.cjs +0 -388
  224. package/lib/core/rs-nl-to-query.cjs +0 -425
  225. package/lib/core/rs-pinecone-bridge.cjs +0 -303
  226. package/lib/core/rs-preprocessor.cjs +0 -350
  227. package/lib/core/rs-query-matrix.cjs +0 -316
  228. package/lib/core/rs-query-to-text.cjs +0 -438
  229. package/lib/core/rs-sqlite-mirror.cjs +0 -443
  230. package/lib/core/rs-thesis-generator.cjs +0 -188
  231. package/lib/core/rs_cache.py +0 -479
  232. package/lib/core/rs_corpus.py +0 -468
  233. package/lib/core/rs_hybrid.py +0 -586
  234. package/lib/core/rs_math.py +0 -287
  235. package/lib/core/rs_rooms.py +0 -193
  236. package/lib/core/scheduled-scanner.cjs +0 -463
  237. package/lib/core/scratchpad-ops.cjs +0 -201
  238. package/lib/core/section-8-trace-schema.cjs +0 -138
  239. package/lib/core/section-registry.cjs +0 -111
  240. package/lib/core/session-state.cjs +0 -144
  241. package/lib/core/shallow-doc-parser.cjs +0 -174
  242. package/lib/core/shallow-doc-parser.test.cjs +0 -226
  243. package/lib/core/skill-activation-router.cjs +0 -284
  244. package/lib/core/state-ops.cjs +0 -46
  245. package/lib/core/statusline-cache.cjs +0 -266
  246. package/lib/core/token-estimator.cjs +0 -348
  247. package/lib/core/user-archetype.cjs +0 -239
  248. package/lib/core/user-md-ops.cjs +0 -524
  249. package/lib/core/visual-ops.cjs +0 -624
  250. package/lib/core/write-lock.cjs +0 -149
  251. package/lib/graph/canvas-graph.js +0 -467
  252. package/lib/graph/constellation-config.cjs +0 -299
  253. package/lib/graph/graph-detail-panel.js +0 -165
  254. package/lib/hmi/ROOM.md +0 -47
  255. package/lib/hmi/across-session-memory.cjs +0 -604
  256. package/lib/hmi/cross-room-memory.cjs +0 -575
  257. package/lib/hmi/decoy-tier.cjs +0 -395
  258. package/lib/hmi/jtbd-classifier.cjs +0 -219
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  275. package/lib/import/PRECONDITIONS.md +0 -41
  276. package/lib/import/branding.cjs +0 -210
  277. package/lib/import/branding.test.cjs +0 -235
  278. package/lib/import/classifications-sync.cjs +0 -104
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  298. package/lib/import/test-fixtures/collision-vault/preexisting-room/STATE.md +0 -8
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  339. package/lib/memory/brain-server-resolution.test.cjs +0 -314
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  342. package/lib/memory/dashboard-server.test.cjs +0 -256
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@@ -1,443 +0,0 @@
1
- /*
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- * Copyright (c) 2026 Mindrian. BSL 1.1.
3
- * Phase 89.3 Plan 02 -- SQLite mirror writer for canonical RS schema.
4
- *
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- * writeDiscovery(pair, opts) is the Tier 0 (Aura-unavailable) writer in the
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- * dual-tier output layer. Mirrors the rs-neo4j-writer.cjs (Plan 89.3-01)
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- * public API surface byte-for-byte so callers swap backends transparently.
8
- *
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- * Schema (per kickoff section 5):
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- * Nodes: RSDiscovery + ReverseSalient + Innovation + Paper + Author + Institution
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- * Edges: DISCOVERED + DERIVED_FROM + ENABLES + AUTHORED_BY + AFFILIATED_WITH
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- *
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- * Stored in room.db's existing nodes + edges tables (the lazygraph-ops
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- * schema). node.type and edge.type discriminate the kind. INSERT OR REPLACE
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- * provides MERGE-equivalent idempotency: the id PRIMARY KEY on nodes and the
16
- * (source, target, type) composite PRIMARY KEY on edges are the dedup
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- * mechanism. Re-running writeDiscovery with the same input pair yields zero
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- * NEW rows (verified via SELECT COUNT before vs after).
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- *
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- * Deterministic id generation: the 3 core node ids (discovery_id, rs_id,
21
- * innovation_id) are sha256-derived from {query_concept, doc_concept,
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- * classification}. This implementation is byte-identical to the
23
- * buildDeterministicIds in rs-neo4j-writer.cjs so the dual-tier dedup
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- * contract is consistent across writers.
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- *
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- * Canon Part 7 (Reuse Before Build):
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- * - Reuses lazygraph.openGraph + closeGraph (no new SQLite wrapper)
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- * - Consumes EDGE_TYPES from lazygraph-ops.cjs (extended in Plan 89.3-01)
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- * - Shares ExternalEgressViolation + auditQueryObject with 89.2 fetchers
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- *
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- * Canon Part 8 (Graph Boundary -- defense-in-depth): even though writes go
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- * to the user's OWN room.db (not Brain), auditQueryObject runs over the SQL
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- * params object BEFORE every INSERT. Catches forbidden patterns smuggled
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- * through node properties OR opts.context.experts/papers arrays. Throws
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- * ExternalEgressViolation on hit. Conservative because the data lineage
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- * flows downstream into rs-mind-map (rendered HTML) and rs-expert-mapper
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- * (Aura when available).
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- *
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- * Tier dispatch is NOT this module's responsibility. The writer assumes
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- * Aura is unavailable (the dispatch surface in Plan 89.3-05 picks this
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- * writer when isAuraConnected returns false). If room.db is missing or
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- * unwritable, throws SQLiteUnreachableError -- a clean signal for the
43
- * dispatch layer to surface a user-facing 'room.db unavailable' message.
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- *
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- * rollback_cypher field name (despite carrying SQL DELETE statements
46
- * instead of Cypher DETACH DELETE) is intentional for cross-tier API
47
- * consistency. The dispatch layer (Plan 89.3-05) reads this field
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- * uniformly across both writers.
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- *
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- * Pure CJS, zero npm deps, node built-ins only (crypto).
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- */
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- 'use strict';
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-
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- const crypto = require('crypto');
55
- const { ExternalEgressViolation } = require('./rs-egress-violations.cjs');
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- const { auditQueryObject } = require('./rs-egress-prompts.cjs');
57
- const lazygraph = require('./lazygraph-ops.cjs');
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-
59
- const SURFACE = 'rs-sqlite-mirror';
60
- const SCHEMA_VERSION = '1.0';
61
- const REQUIRED_FIELDS = Object.freeze(['query_concept', 'doc_concept', 'classification', 'thesis']);
62
-
63
- // ---------- SQLiteUnreachableError ----------
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- //
65
- // Tier-dispatch signal (NOT a security violation). Caller catches this and
66
- // surfaces a user-facing 'room.db unavailable' message OR (if a deeper
67
- // fallback exists) routes to an in-memory shim. Distinct from
68
- // ExternalEgressViolation so the two error classes never get conflated in
69
- // stack traces or audit logs.
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-
71
- class SQLiteUnreachableError extends Error {
72
- constructor(message, meta) {
73
- super(message);
74
- this.name = 'SQLiteUnreachableError';
75
- this.meta = meta || {};
76
- }
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- }
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-
79
- // ---------- buildDeterministicIds ----------
80
- //
81
- // The dedup contract shared with Plan 89.3-01 (rs-neo4j-writer). The
82
- // implementation is byte-identical across both writers so the same pair
83
- // produces the same 3 core ids regardless of which tier is active.
84
- //
85
- // stableKey is JSON.stringify of {q, d, c} (in fixed key order so the
86
- // resulting bytes are stable across Node versions). sha256 then hex-slice
87
- // the first 16 chars gives a 64-bit collision space (sufficient for
88
- // per-room discovery counts; collision probability negligible).
89
-
90
- function buildDeterministicIds(pair) {
91
- const stableKey = JSON.stringify({
92
- q: pair.query_concept,
93
- d: pair.doc_concept,
94
- c: pair.classification,
95
- });
96
- const hash = crypto.createHash('sha256').update(stableKey).digest('hex').slice(0, 16);
97
- return {
98
- discovery_id: 'rsd-' + hash,
99
- rs_id: 'rs-' + hash,
100
- innovation_id: 'inn-' + hash,
101
- };
102
- }
103
-
104
- // ---------- generateOpId ----------
105
- //
106
- // Random per-op telemetry id (NOT a node id). Caller may journal this for
107
- // rollback bookkeeping. The id is intentionally non-deterministic so two
108
- // re-runs of the same pair produce DIFFERENT op ids (proving the call
109
- // happened twice even though the underlying rows were INSERT OR REPLACE
110
- // matched).
111
-
112
- function generateOpId() {
113
- return 'op-' + new Date().toISOString().slice(0, 10) + '-' + crypto.randomUUID();
114
- }
115
-
116
- // ---------- validateRequiredFields ----------
117
- //
118
- // Shape gate. Runs BEFORE audit + SQLite open. Throws TypeError naming the
119
- // missing field so callers can surface a precise error to the user.
120
-
121
- function validateRequiredFields(pair) {
122
- if (!pair || typeof pair !== 'object') {
123
- throw new TypeError(SURFACE + ': pair must be an object');
124
- }
125
- for (const f of REQUIRED_FIELDS) {
126
- if (typeof pair[f] !== 'string' || pair[f].length === 0) {
127
- throw new TypeError(SURFACE + ': missing required field: ' + f);
128
- }
129
- }
130
- }
131
-
132
- // ---------- validateEdgeType ----------
133
- //
134
- // Defense-in-depth: refuse to write any edge whose type is NOT in EDGE_TYPES
135
- // (consumes the same constant rs-neo4j-writer uses, proving the dual-tier
136
- // writers share the schema registry).
137
-
138
- function validateEdgeType(edgeType) {
139
- if (!lazygraph.EDGE_TYPES.includes(edgeType)) {
140
- throw new TypeError(SURFACE + ': edge type not in EDGE_TYPES: ' + edgeType);
141
- }
142
- }
143
-
144
- // ---------- buildSqlParams ----------
145
- //
146
- // Assemble the rows to insert. Returns {nodeRows: [...], edgeRows: [...]}
147
- // where each row's properties is the JSON-serialized property bag.
148
- //
149
- // Core nodes (always present):
150
- // - RSDiscovery (id = discovery_id)
151
- // - ReverseSalient (id = rs_id)
152
- // - Innovation (id = innovation_id)
153
- //
154
- // Conditional nodes (when opts.context provides them):
155
- // - Paper (id = paper.id from opts.context.papers)
156
- // - Author (id = name + '|' + (orcid || '__no_orcid__') -- mirrors the
157
- // name_orcid_key composite key in Aura schema)
158
- // - Institution (id = institution.name)
159
- //
160
- // Core edges (always present):
161
- // - (RSDiscovery)-[DISCOVERED]->(ReverseSalient)
162
- // - (ReverseSalient)-[DERIVED_FROM]->(Innovation)
163
- // - (RSDiscovery)-[ENABLES]->(Innovation)
164
- //
165
- // Conditional edges (when opts.context provides them):
166
- // - (RSDiscovery)-[DERIVED_FROM]->(Paper) for each paper
167
- // - (Author)-[AFFILIATED_WITH]->(Institution) when expert.institution present
168
- // - (Paper)-[AUTHORED_BY]->(Author) for each (paper, author) pair
169
-
170
- function buildSqlParams(pair, ctx, ids) {
171
- const breakthrough = pair.breakthrough || {};
172
- const breakdown = breakthrough.breakdown || {};
173
- const created_at = new Date().toISOString();
174
-
175
- const papers = Array.isArray(ctx.papers) ? ctx.papers : [];
176
- const experts = Array.isArray(ctx.experts) ? ctx.experts : [];
177
-
178
- const nodeRows = [];
179
- const edgeRows = [];
180
-
181
- // RSDiscovery
182
- nodeRows.push({
183
- id: ids.discovery_id,
184
- type: 'RSDiscovery',
185
- properties: JSON.stringify({
186
- classification: pair.classification,
187
- breakthrough_score: typeof breakthrough.score === 'number' ? breakthrough.score : 0,
188
- dominant_dimension: typeof breakthrough.dominant_dimension === 'string' ? breakthrough.dominant_dimension : '',
189
- thesis: pair.thesis,
190
- bridge_concept: typeof pair.bridge_concept === 'string' ? pair.bridge_concept : '',
191
- diff: typeof pair.diff === 'number' ? pair.diff : 0,
192
- lsa: typeof pair.lsa === 'number' ? pair.lsa : 0,
193
- bert: typeof pair.bert === 'number' ? pair.bert : 0,
194
- feasibility: typeof breakdown.feasibility === 'number' ? breakdown.feasibility : 0,
195
- market: typeof breakdown.market === 'number' ? breakdown.market : 0,
196
- magnitude: typeof breakdown.magnitude === 'number' ? breakdown.magnitude : 0,
197
- advantage: typeof breakdown.advantage === 'number' ? breakdown.advantage : 0,
198
- impact: typeof breakdown.impact === 'number' ? breakdown.impact : 0,
199
- created_at: created_at,
200
- room_id: typeof ctx.room_id === 'string' ? ctx.room_id : '',
201
- domain: typeof ctx.domain === 'string' ? ctx.domain : '',
202
- }),
203
- });
204
-
205
- // ReverseSalient
206
- nodeRows.push({
207
- id: ids.rs_id,
208
- type: 'ReverseSalient',
209
- properties: JSON.stringify({
210
- query_concept: pair.query_concept,
211
- doc_concept: pair.doc_concept,
212
- classification: pair.classification,
213
- }),
214
- });
215
-
216
- // Innovation
217
- nodeRows.push({
218
- id: ids.innovation_id,
219
- type: 'Innovation',
220
- properties: JSON.stringify({
221
- thesis: pair.thesis,
222
- breakthrough_score: typeof breakthrough.score === 'number' ? breakthrough.score : 0,
223
- }),
224
- });
225
-
226
- // Core edges (3)
227
- edgeRows.push({
228
- source: ids.discovery_id,
229
- target: ids.rs_id,
230
- type: 'DISCOVERED',
231
- properties: JSON.stringify({}),
232
- });
233
- edgeRows.push({
234
- source: ids.rs_id,
235
- target: ids.innovation_id,
236
- type: 'DERIVED_FROM',
237
- properties: JSON.stringify({}),
238
- });
239
- edgeRows.push({
240
- source: ids.discovery_id,
241
- target: ids.innovation_id,
242
- type: 'ENABLES',
243
- properties: JSON.stringify({}),
244
- });
245
-
246
- // Paper nodes + DERIVED_FROM edges
247
- for (const p of papers) {
248
- if (!p || typeof p.id !== 'string') continue;
249
- nodeRows.push({
250
- id: p.id,
251
- type: 'Paper',
252
- properties: JSON.stringify({
253
- title: typeof p.title === 'string' ? p.title : '',
254
- doi: typeof p.doi === 'string' ? p.doi : '',
255
- source: typeof p.source === 'string' ? p.source : '',
256
- }),
257
- });
258
- edgeRows.push({
259
- source: ids.discovery_id,
260
- target: p.id,
261
- type: 'DERIVED_FROM',
262
- properties: JSON.stringify({}),
263
- });
264
- }
265
-
266
- // Author + Institution nodes + AFFILIATED_WITH edges (from experts)
267
- for (const e of experts) {
268
- if (!e || typeof e.name !== 'string') continue;
269
- const authorKey = e.name + '|' + (typeof e.orcid === 'string' && e.orcid.length > 0 ? e.orcid : '__no_orcid__');
270
- nodeRows.push({
271
- id: authorKey,
272
- type: 'Author',
273
- properties: JSON.stringify({
274
- name: e.name,
275
- orcid: typeof e.orcid === 'string' ? e.orcid : '',
276
- h_index_estimate: typeof e.h_index_estimate === 'number' ? e.h_index_estimate : 0,
277
- }),
278
- });
279
- if (typeof e.institution === 'string' && e.institution.length > 0) {
280
- nodeRows.push({
281
- id: e.institution,
282
- type: 'Institution',
283
- properties: JSON.stringify({ name: e.institution }),
284
- });
285
- edgeRows.push({
286
- source: authorKey,
287
- target: e.institution,
288
- type: 'AFFILIATED_WITH',
289
- properties: JSON.stringify({}),
290
- });
291
- }
292
- }
293
-
294
- // AUTHORED_BY edges from (paper, author) pairs derived from papers[].authors
295
- for (const p of papers) {
296
- if (!p || typeof p.id !== 'string') continue;
297
- const authors = Array.isArray(p.authors) ? p.authors : [];
298
- for (const a of authors) {
299
- if (!a || typeof a.name !== 'string') continue;
300
- const authorKey = a.name + '|' + (typeof a.orcid === 'string' && a.orcid.length > 0 ? a.orcid : '__no_orcid__');
301
- edgeRows.push({
302
- source: p.id,
303
- target: authorKey,
304
- type: 'AUTHORED_BY',
305
- properties: JSON.stringify({}),
306
- });
307
- }
308
- }
309
-
310
- return { nodeRows: nodeRows, edgeRows: edgeRows };
311
- }
312
-
313
- // ---------- buildRollbackSql ----------
314
- //
315
- // Returns multi-statement SQL string. Edges DELETEs FIRST (FK safety),
316
- // then 3 core nodes DELETE. Shared Paper/Author/Institution NOT deleted
317
- // (may be referenced by other RSDiscoveries; rolling them back would
318
- // corrupt the graph for unrelated discoveries).
319
-
320
- function buildRollbackSql(ids) {
321
- return [
322
- 'DELETE FROM edges WHERE source = \'' + ids.discovery_id + '\' OR target = \'' + ids.discovery_id + '\';',
323
- 'DELETE FROM edges WHERE source = \'' + ids.rs_id + '\' OR target = \'' + ids.rs_id + '\';',
324
- 'DELETE FROM edges WHERE source = \'' + ids.innovation_id + '\' OR target = \'' + ids.innovation_id + '\';',
325
- 'DELETE FROM nodes WHERE id = \'' + ids.discovery_id + '\';',
326
- 'DELETE FROM nodes WHERE id = \'' + ids.rs_id + '\';',
327
- 'DELETE FROM nodes WHERE id = \'' + ids.innovation_id + '\';',
328
- ].join('\n');
329
- }
330
-
331
- // ---------- writeDiscovery ----------
332
- //
333
- // The public entry point. Orchestration:
334
- // 1. Validate pair shape (throws TypeError on missing required field)
335
- // 2. Build deterministic ids (sha256-derived)
336
- // 3. Build SQL params (nodeRows + edgeRows arrays)
337
- // 4. Run auditQueryObject pre-write (Canon Part 8 defense-in-depth;
338
- // throws ExternalEgressViolation on FORBIDDEN_PATTERNS hit)
339
- // 5. Validate every edge type against EDGE_TYPES (defensive)
340
- // 6. Open room.db via lazygraph.openGraph (throws SQLiteUnreachableError
341
- // on backend failure -- clean tier-dispatch signal)
342
- // 7. Count nodes + edges BEFORE; INSERT OR REPLACE every row; count AFTER
343
- // 8. Return {wrote_node_count, wrote_edge_count, rollback_cypher,
344
- // aura_op_id, schema_version}
345
- // 9. Always close room.db in finally
346
-
347
- async function writeDiscovery(pair, opts) {
348
- opts = opts || {};
349
- validateRequiredFields(pair);
350
-
351
- const roomDir = (typeof opts.roomDir === 'string' && opts.roomDir.length > 0) ? opts.roomDir : process.cwd();
352
- const ids = buildDeterministicIds(pair);
353
- const ctx = (opts.context && typeof opts.context === 'object') ? opts.context : {};
354
- const params = buildSqlParams(pair, ctx, ids);
355
-
356
- // Canon Part 8 defense-in-depth: audit BEFORE SQLite write. Covers the
357
- // entire SQL params object (nodeRows + edgeRows) via JSON.stringify walk
358
- // in auditQueryObject. Forbidden bytes anywhere in the property JSON
359
- // throw before any INSERT executes.
360
- auditQueryObject(params, SURFACE);
361
-
362
- // Validate every edge type before writing (defensive; Canon Part 7 reuse
363
- // of EDGE_TYPES schema registry).
364
- for (const e of params.edgeRows) validateEdgeType(e.type);
365
-
366
- let db, conn;
367
- try {
368
- const handle = await lazygraph.openGraph(roomDir);
369
- db = handle.db;
370
- conn = handle.conn;
371
- } catch (err) {
372
- throw new SQLiteUnreachableError(
373
- 'room.db unavailable: ' + (err && err.message ? err.message : String(err)),
374
- { original: err && err.message ? err.message : String(err), roomDir: roomDir }
375
- );
376
- }
377
-
378
- try {
379
- const beforeNodeCount = conn.prepare('SELECT COUNT(*) AS n FROM nodes').get().n;
380
- const beforeEdgeCount = conn.prepare('SELECT COUNT(*) AS n FROM edges').get().n;
381
-
382
- const insertNode = conn.prepare('INSERT OR REPLACE INTO nodes (id, type, properties) VALUES (?, ?, ?)');
383
- const insertEdge = conn.prepare('INSERT OR REPLACE INTO edges (source, target, type, properties) VALUES (?, ?, ?, ?)');
384
-
385
- for (const n of params.nodeRows) insertNode.run(n.id, n.type, n.properties);
386
- for (const e of params.edgeRows) insertEdge.run(e.source, e.target, e.type, e.properties);
387
-
388
- const afterNodeCount = conn.prepare('SELECT COUNT(*) AS n FROM nodes').get().n;
389
- const afterEdgeCount = conn.prepare('SELECT COUNT(*) AS n FROM edges').get().n;
390
-
391
- return {
392
- wrote_node_count: afterNodeCount - beforeNodeCount,
393
- wrote_edge_count: afterEdgeCount - beforeEdgeCount,
394
- rollback_cypher: buildRollbackSql(ids),
395
- aura_op_id: generateOpId(),
396
- schema_version: SCHEMA_VERSION,
397
- };
398
- } catch (err) {
399
- if (err instanceof ExternalEgressViolation) throw err;
400
- if (err instanceof TypeError) throw err;
401
- throw new SQLiteUnreachableError(
402
- 'SQLite write failed: ' + (err && err.message ? err.message : String(err)),
403
- { original: err && err.message ? err.message : String(err) }
404
- );
405
- } finally {
406
- if (db) {
407
- try {
408
- await lazygraph.closeGraph(db);
409
- } catch (_e) { /* best effort */ }
410
- }
411
- }
412
- }
413
-
414
- // ---------- Edge type registry consumption ----------
415
- //
416
- // Defensive guard: refuse to load if the EDGE_TYPES extension Plan 89.3-01
417
- // shipped is missing. Non-throwing in production (warn on stderr) so the
418
- // writer remains usable while the upstream is fixed; downstream callers
419
- // will hit validateEdgeType which throws TypeError instead.
420
-
421
- const REQUIRED_EDGE_TYPES = ['DISCOVERED', 'DERIVED_FROM', 'ENABLES', 'AUTHORED_BY', 'AFFILIATED_WITH'];
422
- for (const t of REQUIRED_EDGE_TYPES) {
423
- if (!lazygraph.EDGE_TYPES.includes(t)) {
424
- process.stderr.write(SURFACE + ': WARNING -- EDGE_TYPES missing required type: ' + t + '\n');
425
- }
426
- }
427
-
428
- // ---------- Exports ----------
429
-
430
- module.exports = {
431
- writeDiscovery,
432
- SQLiteUnreachableError,
433
- SCHEMA_VERSION,
434
- REQUIRED_FIELDS,
435
- _test: {
436
- buildDeterministicIds,
437
- generateOpId,
438
- buildSqlParams,
439
- buildRollbackSql,
440
- validateRequiredFields,
441
- validateEdgeType,
442
- },
443
- };
@@ -1,188 +0,0 @@
1
- /*
2
- * Copyright (c) 2026 Mindrian. BSL 1.1.
3
- * Phase 89.2 Plan 07 Task 3 -- Phase 4 deterministic thesis template fill.
4
- *
5
- * Pure template fill emitting:
6
- *
7
- * "By applying ${X} to ${Y}, achieve ${Z} because ${mechanism} ${bridge_concept}."
8
- *
9
- * from the post-classifier + post-breakthrough-scorer composite shape.
10
- * NO runtime LLM. NO Math.random. NO Date.now. Pure string concatenation
11
- * over deterministic lookups -- byte-identical output for identical inputs.
12
- *
13
- * Field mapping per kickoff §5 Phase 4:
14
- *
15
- * X = classified_pair.query_concept
16
- * Y = classified_pair.doc_concept
17
- *
18
- * Z = DOMINANT_TO_LABEL[breakthrough.dominant_dimension]:
19
- * feasibility -> 'feasible novel transfer'
20
- * market -> 'market-ready innovation'
21
- * magnitude -> 'high-magnitude breakthrough'
22
- * advantage -> 'rare cross-domain advantage'
23
- * impact -> 'high-impact result'
24
- * missing -> 'novel insight' (graceful fallback)
25
- *
26
- * mechanism = MECHANISM_BY_CLASSIFICATION[classification]:
27
- * structural_transfer -> 'isomorphic structure transfers under'
28
- * semantic_implementation -> 'semantic embedding bridges'
29
- * hybrid -> 'both structural and semantic alignment supports'
30
- *
31
- * bridge_concept = classified_pair.bridge_concept || 'domain analogy'
32
- *
33
- * Edge cases:
34
- * - Missing breakthrough.dominant_dimension: Z = 'novel insight'.
35
- * - Missing classified_pair.bridge_concept: bridge_concept = 'domain analogy'.
36
- * - Missing both: thesis still emitted with both fallbacks.
37
- * - Missing classification or unknown classification: returns
38
- * {error: 'invalid_input', reason: 'invalid_classification'} envelope.
39
- * - Missing query_concept or doc_concept: returns
40
- * {error: 'invalid_input', reason: 'missing_concepts'} envelope.
41
- *
42
- * Canon Part 8 (Graph Boundary): two defense-in-depth layers.
43
- *
44
- * Layer 1 -- pre-input scan: every string field of classified_pair
45
- * (query_concept, doc_concept, bridge_concept, classification)
46
- * passed through auditQueryString BEFORE any template assembly.
47
- * Throws ExternalEgressViolation on hit -- thesis is NEVER generated
48
- * when this throws.
49
- *
50
- * Layer 2 -- pre-return audit: assembled thesis string passed through
51
- * auditQueryString before return. Defense-in-depth so any forbidden
52
- * pattern smuggled via a Layer-1-uncovered surface (e.g., a future
53
- * opts.suffix) is caught at the gate.
54
- *
55
- * Pure CJS, zero npm deps, node built-ins only beyond rs-egress-* primitives.
56
- */
57
- 'use strict';
58
-
59
- const { auditQueryString } = require('./rs-egress-prompts.cjs');
60
- require('./rs-egress-violations.cjs');
61
-
62
- // ---------- Frozen invariants ----------
63
-
64
- // Classification -> mechanism clause lookup (frozen). Ordered by frequency
65
- // (structural_transfer is the most common per Phase 3 default fallback).
66
- const MECHANISM_BY_CLASSIFICATION = Object.freeze({
67
- structural_transfer: 'isomorphic structure transfers under',
68
- semantic_implementation: 'semantic embedding bridges',
69
- hybrid: 'both structural and semantic alignment supports',
70
- });
71
-
72
- // Dominant dimension -> Z clause lookup (frozen). Ordered to match the
73
- // rs-breakthrough-scorer.cjs DIMENSIONS frozen order so the two modules'
74
- // frozen-order contracts stay aligned.
75
- const DOMINANT_TO_LABEL = Object.freeze({
76
- feasibility: 'feasible novel transfer',
77
- market: 'market-ready innovation',
78
- magnitude: 'high-magnitude breakthrough',
79
- advantage: 'rare cross-domain advantage',
80
- impact: 'high-impact result',
81
- });
82
-
83
- // Fallback strings for missing fields. Frozen as constants so refactor
84
- // drift is loud, not silent.
85
- const FALLBACK_Z = 'novel insight';
86
- const FALLBACK_BRIDGE = 'domain analogy';
87
-
88
- // ---------- generateThesis ----------
89
- //
90
- // Public entry point. Synchronous (no I/O, no spawn). Throws only on
91
- // Canon Part 8 violations.
92
- //
93
- // Inputs:
94
- // classified_pair object post-classifier shape (query_concept,
95
- // doc_concept, classification, bridge_concept)
96
- // breakthrough object post-breakthrough-scorer shape (dominant_dimension)
97
- // opts optional (currently unused; reserved for future)
98
- //
99
- // Output (happy path):
100
- // thesis string the assembled template-fill string ending in '.'
101
- //
102
- // Output (invalid input):
103
- // {error: 'invalid_input', reason: <string>} envelope
104
- //
105
- // Throws (Canon Part 8):
106
- // ExternalEgressViolation if any string field of classified_pair
107
- // matches FORBIDDEN_PATTERNS
108
- // ExternalEgressViolation if assembled thesis matches FORBIDDEN_PATTERNS
109
-
110
- function generateThesis(classified_pair, breakthrough, opts) {
111
- if (!classified_pair || typeof classified_pair !== 'object') {
112
- return { error: 'invalid_input', reason: 'not_object' };
113
- }
114
-
115
- // Canon Part 8 Layer 1: pre-input scan on every string field BEFORE
116
- // any template assembly. Throws ExternalEgressViolation on hit.
117
- // Order is fixed (query, doc, bridge, classification) so the thrown
118
- // error's stack trace is byte-stable across invocations.
119
- if (typeof classified_pair.query_concept === 'string') {
120
- auditQueryString(classified_pair.query_concept, 'thesis-generator');
121
- }
122
- if (typeof classified_pair.doc_concept === 'string') {
123
- auditQueryString(classified_pair.doc_concept, 'thesis-generator');
124
- }
125
- if (typeof classified_pair.bridge_concept === 'string') {
126
- auditQueryString(classified_pair.bridge_concept, 'thesis-generator');
127
- }
128
- if (typeof classified_pair.classification === 'string') {
129
- auditQueryString(classified_pair.classification, 'thesis-generator');
130
- }
131
-
132
- // Required field shape guards.
133
- const X = classified_pair.query_concept;
134
- const Y = classified_pair.doc_concept;
135
- if (typeof X !== 'string' || typeof Y !== 'string' || X.length === 0 || Y.length === 0) {
136
- return { error: 'invalid_input', reason: 'missing_concepts' };
137
- }
138
-
139
- const classification = classified_pair.classification;
140
- if (typeof classification !== 'string' || !(classification in MECHANISM_BY_CLASSIFICATION)) {
141
- return { error: 'invalid_input', reason: 'invalid_classification' };
142
- }
143
- const mechanism = MECHANISM_BY_CLASSIFICATION[classification];
144
-
145
- // Z lookup with graceful fallback when dominant_dimension is missing or
146
- // not in DOMINANT_TO_LABEL. Missing breakthrough envelope itself is
147
- // also handled (downstream callers may pass breakthrough=null when
148
- // skipping the scorer for a quick template render).
149
- let Z = FALLBACK_Z;
150
- if (breakthrough && typeof breakthrough === 'object') {
151
- const dom = breakthrough.dominant_dimension;
152
- if (typeof dom === 'string' && (dom in DOMINANT_TO_LABEL)) {
153
- Z = DOMINANT_TO_LABEL[dom];
154
- }
155
- }
156
-
157
- // bridge_concept fallback. classified_pair.bridge_concept may be null
158
- // (computeBridgeConcept returned null for an unknown classification, or
159
- // upstream classifier passed null deliberately).
160
- const bridge_concept = (typeof classified_pair.bridge_concept === 'string' &&
161
- classified_pair.bridge_concept.length > 0)
162
- ? classified_pair.bridge_concept
163
- : FALLBACK_BRIDGE;
164
-
165
- // Assemble the template. Pure string concat -- no template literal
166
- // backtick interpolation so the source surface is mechanically grep-able.
167
- const thesis = 'By applying ' + X + ' to ' + Y +
168
- ', achieve ' + Z +
169
- ' because ' + mechanism + ' ' + bridge_concept + '.';
170
-
171
- // Canon Part 8 Layer 2: pre-return audit on assembled thesis. Defense
172
- // in depth.
173
- auditQueryString(thesis, 'thesis-generator');
174
-
175
- return thesis;
176
- }
177
-
178
- // ---------- Exports ----------
179
-
180
- module.exports = {
181
- generateThesis: generateThesis,
182
- _test: {
183
- MECHANISM_BY_CLASSIFICATION: MECHANISM_BY_CLASSIFICATION,
184
- DOMINANT_TO_LABEL: DOMINANT_TO_LABEL,
185
- FALLBACK_Z: FALLBACK_Z,
186
- FALLBACK_BRIDGE: FALLBACK_BRIDGE,
187
- },
188
- };