@mindfoldhq/trellis 0.6.8 → 0.6.9

package/dist/configurators/workflow.js.map

@@ -1 +1 @@
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package/dist/migrations/manifests/0.6.9.json

@@ -0,0 +1,9 @@
+{
+  "version": "0.6.9",
+  "description": "Snow CLI platform, sub-agent context injection caps (Python/Pi/OpenCode) with binary-file handling, no-trellis skip keyword, durable Codex sub-agent model config, channel trusted context dirs, and journal merge conflict relief.",
+  "breaking": false,
+  "recommendMigrate": false,
+  "changelog": "**Enhancements:**\n- feat(cli): add Snow CLI as class-1 Trellis platform — `trellis init --snow` (#443)\n- feat(hooks): cap sub-agent context injection with configurable limits across the Python hook, Pi extension, and OpenCode plugin — `context_injection` in config.yaml (#441, #456)\n- fix(cli): sub-agent context injection now detects binary referenced files and emits a reference-only notice instead of corrupting output (#471)\n- feat(hooks): `no-trellis` keyword in a prompt mutes per-turn workflow-state injection for that turn — `prompt_injection.skip_keyword` in config.yaml (#427)\n- feat(codex): user-set `model` / `model_reasoning_effort` in `.codex/agents/trellis-*.toml` now survive `trellis update` regeneration; templates ship commented hints (#459)\n- feat(channel): `channel.trusted_context_dirs` config plus narrow auto-trust of symlinked `.trellis/tasks` / `.trellis/workspace` for context loading (#414)\n- feat(scripts): `add_session.py` gains repeatable `--change` / `--test` / `--next-step` flags; empty sections are omitted instead of rendering placeholder text (#394)\n- feat(scripts): `task.py list` renders a dangling parent reference flat instead of hiding the task (#402)\n- feat(scripts): `task.py create --meta key=value` (repeatable) and `task.py set-meta` expose the task.json `meta` field\n\n**Bug Fixes:**\n- fix(kimi): `trellis-research` now persists findings through the writable built-in `coder` sub-agent instead of losing them (#457)\n- feat(workspace): `.gitattributes` ships `journal-*.md merge=union` so parallel-worktree session merges no longer conflict on append-only journal content; `index.md` conflicts are documented as expected and safe to resolve by picking either side (#415)",
+  "migrations": [],
+  "notes": "Pi Agent users on 0.6.8: skills already moved to .agents/skills/. Codex users: agent model config now persists across update — edit .codex/agents/trellis-*.toml directly."
+}

package/dist/templates/codex/agents/trellis-check.toml

@@ -1,6 +1,8 @@
 name = "trellis-check"
 description = "Workspace-write Trellis reviewer that self-fixes spec drift, lint/type-check failures, and missing tests."
 sandbox_mode = "workspace-write"
+# model = "gpt-5.6-terra"
+# model_reasoning_effort = "high"
 
 developer_instructions = """
 You are running as the `trellis-check` sub-agent. The main session has dispatched you to review and self-fix.

package/dist/templates/codex/agents/trellis-implement.toml

@@ -1,6 +1,8 @@
 name = "trellis-implement"
 description = "Workspace-write Trellis implementer that follows specs and keeps generated templates in sync."
 sandbox_mode = "workspace-write"
+# model = "gpt-5.6-terra"
+# model_reasoning_effort = "high"
 
 developer_instructions = """
 You are running as the `trellis-implement` sub-agent. The main session has dispatched you to do the work.

package/dist/templates/codex/agents/trellis-research.toml

@@ -1,6 +1,8 @@
 name = "trellis-research"
 description = "Trellis researcher for specs, code patterns, and affected files. Writes findings into {TASK_DIR}/research/ — read-only elsewhere."
 sandbox_mode = "workspace-write"
+# model = "gpt-5.6-terra"
+# model_reasoning_effort = "high"
 
 developer_instructions = """
 You are the Trellis researcher agent.

package/dist/templates/common/bundled-skills/trellis-meta/references/platform-files/agents.md

@@ -34,7 +34,7 @@ Agent files should not become generic chat prompts. They should define input sou
 | Pi Agent | `.pi/agents/trellis-*.md` |
 | Reasonix | `.reasonix/skills/trellis-*/SKILL.md` (subagent frontmatter) |
 | ZCode | `.zcode/agents/trellis-*.md` |
-| Kimi Code | `.kimi-code/skills/trellis-*/SKILL.md` (agent prompts as skills, dispatched to the built-in coder/explore/plan sub-agents) |
+| Kimi Code | `.kimi-code/skills/trellis-*/SKILL.md` (agent prompts as skills, dispatched to the built-in `coder`; research needs its file-editing tools to persist findings) |
 
 GitHub Copilot agent/prompt support is provided by a combination of directories such as `.github/agents/`, `.github/prompts/`, and `.github/skills/`; inspect the files actually generated in the user project.
 

package/dist/templates/common/bundled-skills/trellis-meta/references/platform-files/overview.md

@@ -5,7 +5,7 @@ Trellis connects the same local architecture to different AI tools. `.trellis/`
 When a local AI modifies Trellis, it should distinguish two file categories first:
 
 - **Shared files**: `.trellis/workflow.md`, `.trellis/tasks/`, `.trellis/spec/`, `.trellis/scripts/`.
-- **Platform files**: `.claude/`, `.codex/`, `.cursor/`, `.opencode/`, `.kiro/`, `.gemini/`, `.qoder/`, `.codebuddy/`, `.github/`, `.factory/`, `.pi/`, `.trae/`, `.kilocode/`, `.agent/`, `.devin/`, `.reasonix/`, `.zcode/`, `.kimi-code/`, and similar directories.
+- **Platform files**: `.claude/`, `.snow/`, `.codex/`, `.cursor/`, `.opencode/`, `.kiro/`, `.gemini/`, `.qoder/`, `.codebuddy/`, `.github/`, `.factory/`, `.pi/`, `.trae/`, `.kilocode/`, `.agent/`, `.devin/`, `.reasonix/`, `.zcode/`, `.kimi-code/`, and similar directories.
 
 Platform files do not store business state. They let the corresponding AI tool read Trellis state, call Trellis scripts, and load Trellis skills/agents/hooks.
 

package/dist/templates/common/bundled-skills/trellis-meta/references/platform-files/platform-map.md

@@ -24,7 +24,8 @@ This page lists common Trellis file locations in a user project by platform. Whe
 | Reasonix | `--reasonix` | `.reasonix/` | `.reasonix/skills/` | None — sub-agents are skills with `runAs: subagent` frontmatter | None |
 | ZCode | `--zcode` | `.zcode/` | `.zcode/skills/` | `.zcode/agents/` | `.zcode/hooks/` + `.zcode/config.json` (SessionStart + UserPromptSubmit + PreToolUse Agent/Task); sub-agents use hook-injected context |
 | Grok Build | `--grok` | `.grok/` | `.grok/skills/` | `.grok/agents/` | pull-based prelude (no hooks; flat `.grok/commands/trellis-*.md`) |
-| Kimi Code | `--kimi` | `.kimi-code/` | `.agents/skills/` (shared) + `.kimi-code/skills/` | None — agent prompts are skills under `.kimi-code/skills/` (built-in coder/explore/plan sub-agents only) | None (pull-based prelude; no project hooks/settings) |
+| Kimi Code | `--kimi` | `.kimi-code/` | `.agents/skills/` (shared) + `.kimi-code/skills/` | None — agent prompts are skills under `.kimi-code/skills/` and dispatch to the built-in `coder` | None (pull-based prelude; no project hooks/settings) |
+| Snow CLI | `--snow` | `.snow/` | `.snow/skills/` | `.snow/agents/` (auto-discovered; primary path) | class-1: auto inject + project agents + `beforeSubAgentStart` (`.snow/hooks/` `session`/`user`/`subagent` modes -> `additionalContext` JSON); no legacy sub-agent JSON; commands `.snow/commands/trellis-*.json` |
 
 ## Capability Groups
 
@@ -47,7 +48,8 @@ These platforms usually have `trellis-research`, `trellis-implement`, and `trell
 - Reasonix (delivered as skills with `runAs: subagent` under `.reasonix/skills/`, not as a separate `agents/` directory)
 - ZCode
 - Grok Build (`.grok/agents/`; dispatch via `spawn_subagent` with `subagent_type`)
-- Kimi Code (delivered as skills under `.kimi-code/skills/`; dispatched to the built-in coder/explore/plan sub-agents)
+- Kimi Code (delivered as skills under `.kimi-code/skills/`; dispatched to the built-in `coder`, including research because it must persist files)
+- Snow CLI (`.snow/agents/`; auto-discovered project agents + class-1 hooks)
 
 When changing implementation/check/research behavior, look for the corresponding platform agent files first.
 

package/dist/templates/kimi/agents/trellis-research.md

@@ -4,8 +4,8 @@ description: |
   Code and tech search expert for Trellis. Finds files, patterns, and tech
   solutions, and PERSISTS every finding to the current task's research/
   directory. No code modifications outside that directory. On Kimi Code the
-  main session dispatches the built-in explore sub-agent with these
-  instructions.
+  main session dispatches the built-in coder sub-agent with these instructions
+  because it is the only built-in sub-agent with file-editing tools.
 ---
 # Research Agent
 
@@ -19,7 +19,11 @@ Conversations get compacted; files don't. Every research output MUST end up as a
 
 ## Dispatch note (main session)
 
-Kimi Code has no project-level custom sub-agent definitions — only the built-in `coder` / `explore` / `plan` sub-agents. The main session dispatches the built-in `explore` sub-agent via the Agent tool with a prompt that starts with `Active task: <path from task.py current>` and includes this skill's instructions (`.kimi-code/skills/trellis-research/SKILL.md`).
+Kimi Code has no project-level custom sub-agent definitions — only the built-in `coder` / `explore` / `plan` sub-agents. The built-in `explore` sub-agent is read-only, so it cannot satisfy this agent's persistence contract. The main session dispatches the built-in `coder` sub-agent via the Agent tool with a prompt that:
+
+1. Starts with `Active task: <path from task.py current>`
+2. Includes this skill's instructions (`.kimi-code/skills/trellis-research/SKILL.md`)
+3. States that the spawned agent is already `trellis-research` and may write only under the active task's `research/` directory
 
 ---
 

package/dist/templates/omp/extensions/trellis/index.ts.txt

@@ -1,5 +1,5 @@
 import type { ExtensionAPI } from "@oh-my-pi/pi-coding-agent";
-import { existsSync, readFileSync, readdirSync, realpathSync } from "node:fs";
+import { existsSync, lstatSync, readFileSync, readdirSync, realpathSync } from "node:fs";
 import { join, dirname, isAbsolute, relative, resolve } from "node:path";
 import { spawnSync } from "node:child_process";
 import { createHash } from "node:crypto";
@@ -58,11 +58,118 @@ function isInsideRoot(root: string, candidate: string): boolean {
    return rel === "" || (rel !== ".." && !rel.startsWith("../") && !rel.startsWith("..\\") && !isAbsolute(rel));
 }
 
-function resolveProjectFile(projectRoot: string, file: string): string | null {
+// ---------------------------------------------------------------------------
+// Trusted context roots (mirrors packages/cli/src/commands/channel/context-trust.ts;
+// standalone copy since templates don't import from the CLI package).
+// ---------------------------------------------------------------------------
+
+const AUTO_TRUST_ENTRIES = ["tasks", "workspace"];
+
+function stripTrustValue(s: string): string {
+   return s.trim().replace(/\s*#.*$/, "").trim().replace(/^['"]|['"]$/g, "");
+}
+
+function parseChannelTrustSection(content: string): { trustedDirs: string[]; autoTrustSymlinks?: boolean } {
+   const lines = content.split("\n");
+   const trustedDirs: string[] = [];
+   let autoTrustSymlinks: boolean | undefined;
+   let inChannel = false;
+   let inList = false;
+
+   for (const raw of lines) {
+      const line = raw.replace(/\r$/, "");
+      const trimmed = line.trimEnd();
+      if (trimmed.trim().startsWith("#")) continue;
+
+      if (/^channel:\s*$/.test(trimmed)) {
+         inChannel = true;
+         inList = false;
+         continue;
+      }
+      if (!inChannel) continue;
+
+      if (trimmed.trim() !== "" && /^\S/.test(line)) {
+         inChannel = false;
+         inList = false;
+         continue;
+      }
+      if (trimmed.trim() === "") continue;
+
+      if (inList) {
+         const item = trimmed.match(/^ {4}-\s*(.+)$/);
+         if (item) {
+            const val = stripTrustValue(item[1]!);
+            if (val) trustedDirs.push(val);
+            continue;
+         }
+         inList = false;
+      }
+
+      if (/^ {2}trusted_context_dirs:\s*$/.test(trimmed)) {
+         inList = true;
+         continue;
+      }
+
+      const boolMatch = trimmed.match(/^ {2}auto_trust_trellis_symlinks:\s*(.+)$/);
+      if (boolMatch) {
+         const val = stripTrustValue(boolMatch[1]!).toLowerCase();
+         if (val === "false") autoTrustSymlinks = false;
+         else if (val === "true") autoTrustSymlinks = true;
+         else process.stderr.write(`[channel] channel.auto_trust_trellis_symlinks: invalid value '${val}', ignoring\n`);
+         continue;
+      }
+   }
+
+   return { trustedDirs, autoTrustSymlinks };
+}
+
+function resolveTrustedRoots(projectRoot: string): string[] {
+   const configPath = join(projectRoot, ".trellis", "config.yaml");
+   let config: { trustedDirs: string[]; autoTrustSymlinks?: boolean } = { trustedDirs: [] };
+   if (existsSync(configPath)) {
+      try {
+         config = parseChannelTrustSection(readFileSync(configPath, "utf-8"));
+      } catch {
+         // ignore
+      }
+   }
+
+   const roots: string[] = [];
+   for (const entry of config.trustedDirs) {
+      try {
+         roots.push(realpathSync(resolve(projectRoot, entry)));
+      } catch {
+         // entry not found or invalid — skip
+      }
+   }
+
+   if (config.autoTrustSymlinks !== false) {
+      for (const entryName of AUTO_TRUST_ENTRIES) {
+         const entryPath = join(projectRoot, ".trellis", entryName);
+         try {
+            if (lstatSync(entryPath).isSymbolicLink()) {
+               roots.push(realpathSync(entryPath));
+            }
+         } catch {
+            // missing / broken symlink — nothing to trust
+         }
+      }
+   }
+
+   return [...new Set(roots)];
+}
+
+function resolveProjectFile(
+   projectRoot: string,
+   file: string,
+   trustedRoots: string[],
+): string | null {
    try {
       const rootReal = realpathSync(projectRoot);
       const targetReal = realpathSync(resolve(projectRoot, file));
-      return isInsideRoot(rootReal, targetReal) ? targetReal : null;
+      if (isInsideRoot(rootReal, targetReal)) return targetReal;
+      if (trustedRoots.some((root) => isInsideRoot(root, targetReal))) return targetReal;
+      return null;
    } catch {
       return null;
    }
@@ -171,6 +278,9 @@ type AgentType = "trellis-implement" | "trellis-check" | "trellis-research" | nu
 
 function buildTaskContext(projectRoot: string, taskDir: string, agentType?: AgentType): string {
    const parts: string[] = [];
+   // Resolved once per call (not per referenced file) — avoids re-parsing
+   // config.yaml for every jsonl row.
+   const trustedRoots = resolveTrustedRoots(projectRoot);
 
    // prd.md and info.md — always included
    let prd = "";
@@ -212,7 +322,7 @@ function buildTaskContext(projectRoot: string, taskDir: string, agentType?: Agen
             const row = JSON.parse(trimmed) as Record<string, unknown>;
             const file = typeof row.file === "string" ? row.file.trim() : "";
             if (!file) continue;
-            const targetPath = resolveProjectFile(projectRoot, file);
+            const targetPath = resolveProjectFile(projectRoot, file, trustedRoots);
             if (!targetPath) continue;
             let content = "";
             try { content = readFileSync(targetPath, "utf-8"); } catch { }

package/dist/templates/opencode/lib/trellis-context.js

@@ -5,11 +5,12 @@
  * JSONL parsing, and context building capabilities.
  */
 
-import { existsSync, readFileSync, appendFileSync, readdirSync } from "fs"
+import { existsSync, readFileSync, appendFileSync, readdirSync, statSync } from "fs"
 import { isAbsolute, join } from "path"
 import { platform } from "os"
 import { execSync } from "child_process"
 import { createHash } from "crypto"
+import { Buffer, isUtf8 } from "buffer"
 import process from "process"
 
 const PYTHON_CMD = platform() === "win32" ? "python" : "python3"
@@ -78,6 +79,240 @@ export function isTrellisSubagent(input) {
   return TRELLIS_SUBAGENT_RE.test(agent)
 }
 
+// ============================================================
+// Context Injection Limits (issue #441)
+//
+// Notice text and behavior mirrored byte-for-byte from the shared-hooks
+// Python sub-agent context injection hook and the Pi extension. Changing
+// wording here requires changing it there too.
+// ============================================================
+
+const DEFAULT_CONTEXT_INJECTION_LIMITS = {
+  max_file_bytes: 32768,
+  max_artifact_bytes: 65536,
+  max_total_bytes: 131072,
+}
+
+/**
+ * Truncate `buf` to at most `cap` bytes without splitting a UTF-8
+ * multi-byte sequence. `cap <= 0` means "no limit".
+ */
+function truncateUtf8(buf, cap) {
+  if (cap <= 0 || buf.length <= cap) return buf
+  let i = cap
+  // Back off over continuation bytes (10xxxxxx) to find the lead byte.
+  while (i > 0 && (buf[i - 1] & 0xc0) === 0x80) i--
+  if (i === 0) return Buffer.alloc(0)
+  const lead = buf[i - 1]
+  if (lead & 0x80) {
+    let seqLen = 1
+    if ((lead & 0xe0) === 0xc0) seqLen = 2
+    else if ((lead & 0xf0) === 0xe0) seqLen = 3
+    else if ((lead & 0xf8) === 0xf0) seqLen = 4
+    // Drop the lead byte too if its full sequence didn't fit.
+    if (i - 1 + seqLen > cap) i--
+  }
+  return buf.subarray(0, i)
+}
+
+function stripInlineComment(value) {
+  let inQuote = null
+  for (let idx = 0; idx < value.length; idx++) {
+    const ch = value[idx]
+    if (inQuote) {
+      if (ch === inQuote) inQuote = null
+      continue
+    }
+    if (ch === '"' || ch === "'") {
+      inQuote = ch
+      continue
+    }
+    if (ch === "#" && (idx === 0 || /\s/.test(value[idx - 1]))) {
+      return value.slice(0, idx)
+    }
+  }
+  return value
+}
+
+function unquoteYaml(s) {
+  if (s.length >= 2 && s[0] === s[s.length - 1] && (s[0] === '"' || s[0] === "'")) {
+    return s.slice(1, -1)
+  }
+  return s
+}
+
+/**
+ * Line-based parser for ONLY the `context_injection:` block of
+ * `.trellis/config.yaml`. Not a general YAML parser — mirrors
+ * `common.config.get_context_injection_limits()` semantics for this
+ * section only (missing keys keep the default; invalid/negative values
+ * fall back to the default for that key with a debugLog warning).
+ */
+function readContextInjectionLimits(repoRoot) {
+  const limits = { ...DEFAULT_CONTEXT_INJECTION_LIMITS }
+  let text = null
+  try {
+    text = readFileSync(join(repoRoot, ".trellis", "config.yaml"), "utf-8")
+  } catch {
+    return limits
+  }
+  if (!text) return limits
+
+  let inSection = false
+  let sectionIndent = -1
+  for (const rawLine of text.split(/\r?\n/)) {
+    const trimmed = rawLine.trim()
+    if (!inSection) {
+      if (/^context_injection\s*:\s*(#.*)?$/.test(trimmed)) {
+        inSection = true
+        sectionIndent = rawLine.length - rawLine.trimStart().length
+      }
+      continue
+    }
+    if (!trimmed || trimmed.startsWith("#")) continue
+    const indent = rawLine.length - rawLine.trimStart().length
+    if (indent <= sectionIndent) break
+    const m = trimmed.match(/^([A-Za-z_][A-Za-z0-9_]*)\s*:\s*(.*)$/)
+    if (!m) continue
+    const key = m[1]
+    if (!(key in limits)) continue
+    const raw = unquoteYaml(stripInlineComment(m[2]).trim()).trim()
+    if (!/^-?\d+$/.test(raw) || parseInt(raw, 10) < 0) {
+      // invalid/negative -> keep default (Python warns on stderr)
+      debugLog("context", `invalid context_injection.${key} value: ${raw}; using default ${limits[key]}`)
+      continue
+    }
+    limits[key] = parseInt(raw, 10)
+  }
+  return limits
+}
+
+/** Tracks the running total of bytes emitted into the sub-agent context. */
+class ContextBudget {
+  constructor(maxTotalBytes) {
+    this.maxTotalBytes = maxTotalBytes
+    this.used = 0
+  }
+
+  hasRoom(size) {
+    if (this.maxTotalBytes <= 0) return true
+    return this.used + size <= this.maxTotalBytes
+  }
+
+  add(size) {
+    this.used += size
+  }
+}
+
+function truncateNotice(path, cap) {
+  return `\n[Trellis: truncated at ${cap} bytes — read ${path} for the full content]`
+}
+
+function isBinaryContent(data) {
+  return data.includes(0) || !isUtf8(data)
+}
+
+function binaryNotice(path, size, reason) {
+  return `[Trellis: not inlined (binary file) — ${path} (${size} bytes): ${reason}]`
+}
+
+function indexNotice(path, size, reason) {
+  return `[Trellis: not inlined (total context limit reached) — ${path} (${size} bytes): ${reason}]`
+}
+
+/**
+ * Return an inlined `=== header ===` block, or degrade to an index
+ * notice once the total context budget is exhausted.
+ */
+function budgetedBlock(budget, header, plainPath, content, reason, sizeForIndex) {
+  const block = `=== ${header} ===\n${content}`
+  const blockBytes = Buffer.byteLength(block, "utf-8")
+  if (!budget.hasRoom(blockBytes)) {
+    const notice = indexNotice(plainPath, sizeForIndex, reason)
+    budget.add(Buffer.byteLength(notice, "utf-8"))
+    return notice
+  }
+  budget.add(blockBytes)
+  return block
+}
+
+/** Read raw file bytes, return null if file doesn't exist. */
+function readFileBytes(basePath, filePath) {
+  const fullPath = isAbsolute(filePath) ? filePath : join(basePath, filePath)
+  try {
+    if (!statSync(fullPath).isFile()) return null
+  } catch {
+    return null
+  }
+  try {
+    return readFileSync(fullPath)
+  } catch {
+    return null
+  }
+}
+
+/** Read a JSONL-referenced file, apply the per-file cap, then budget it. */
+function materializeFile(basePath, filePath, reason, limits, budget) {
+  const data = readFileBytes(basePath, filePath)
+  if (data === null) return null
+
+  const size = data.length
+  if (isBinaryContent(data)) {
+    const notice = binaryNotice(filePath, size, reason)
+    budget.add(Buffer.byteLength(notice, "utf-8"))
+    return notice
+  }
+  const cap = limits.max_file_bytes
+  const truncated = truncateUtf8(data, cap)
+  let content = truncated.toString("utf-8")
+  if (truncated.length < size) content += truncateNotice(filePath, cap)
+
+  return budgetedBlock(budget, filePath, filePath, content, reason, size)
+}
+
+/**
+ * Read all .md files in a directory, applying the same per-file and
+ * total caps as a single-file JSONL entry.
+ */
+function materializeDirectory(basePath, dirPath, reason, limits, budget, maxFiles = 20) {
+  const blocks = []
+  const fullPath = isAbsolute(dirPath) ? dirPath : join(basePath, dirPath)
+
+  let files
+  try {
+    if (!statSync(fullPath).isDirectory()) return blocks
+    files = readdirSync(fullPath)
+      .filter(f => f.endsWith(".md") && statSync(join(fullPath, f)).isFile())
+      .sort()
+  } catch {
+    return blocks
+  }
+
+  for (const filename of files.slice(0, maxFiles)) {
+    const relativePath = join(dirPath, filename)
+    const block = materializeFile(basePath, relativePath, reason, limits, budget)
+    if (block) blocks.push(block)
+  }
+  return blocks
+}
+
+/**
+ * Read a task artifact (prd/design/implement.md), apply the per-artifact
+ * cap, then budget it.
+ */
+function materializeArtifact(basePath, filePath, headerLabel, reason, limits, budget) {
+  const data = readFileBytes(basePath, filePath)
+  if (data === null) return null
+
+  const size = data.length
+  const cap = limits.max_artifact_bytes
+  const truncated = truncateUtf8(data, cap)
+  let content = truncated.toString("utf-8")
+  if (truncated.length < size) content += truncateNotice(filePath, cap)
+
+  return budgetedBlock(budget, headerLabel, filePath, content, reason, size)
+}
+
 /**
  * Trellis Context Manager
  */
@@ -282,44 +517,21 @@ export class TrellisContext {
   // JSONL Reading
   // ============================================================
 
-  readDirectoryMdFiles(dirPath, maxFiles = 20) {
-    const results = []
-    const fullPath = join(this.directory, dirPath)
-
-    if (!existsSync(fullPath)) {
-      return results
-    }
-
-    try {
-      const files = readdirSync(fullPath)
-        .filter(f => f.endsWith(".md"))
-        .sort()
-        .slice(0, maxFiles)
-
-      for (const filename of files) {
-        const filePath = join(dirPath, filename)
-        const content = this.readProjectFile(filePath)
-        if (content) {
-          results.push({ path: filePath, content })
-        }
-      }
-    } catch {
-      // Ignore directory read errors
-    }
-
-    return results
-  }
-
   /**
-   * Read a JSONL file and load referenced files/directories
+   * Read a JSONL file and materialize referenced files/directories into
+   * context blocks, applying per-file caps and the shared total budget
+   * (issue #441). Mirrors Python `_materialize_jsonl_entries`.
    * Supports:
    *   {"file": "path/to/file.md", "reason": "..."}
    *   {"file": "path/to/dir/", "type": "directory", "reason": "..."}
+   *
+   * Missing referenced files are skipped silently (Python `_materialize_file`
+   * returns None for them).
    */
-  readJsonlWithFiles(jsonlPath) {
-    const results = []
+  readJsonlWithFiles(jsonlPath, limits, budget) {
+    const blocks = []
     const content = this.readFile(jsonlPath)
-    if (!content) return results
+    if (!content) return blocks
 
     for (const line of content.split("\n")) {
       if (!line.trim()) continue
@@ -327,28 +539,25 @@ export class TrellisContext {
         const item = JSON.parse(line)
         const file = item.file || item.path
         const entryType = item.type || "file"
+        const reason = item.reason || "-"
 
         if (!file) continue
 
         if (entryType === "directory") {
-          const dirEntries = this.readDirectoryMdFiles(file)
-          results.push(...dirEntries)
+          blocks.push(...materializeDirectory(this.directory, file, reason, limits, budget))
         } else {
-          const fullPath = join(this.directory, file)
-          const fileContent = this.readFile(fullPath)
-          if (fileContent) {
-            results.push({ path: file, content: fileContent })
-          }
+          const block = materializeFile(this.directory, file, reason, limits, budget)
+          if (block) blocks.push(block)
         }
       } catch {
         // Ignore parse errors for individual lines
       }
     }
-    return results
+    return blocks
   }
 
-  buildContextFromEntries(entries) {
-    return entries.map(e => `=== ${e.path} ===\n${e.content}`).join("\n\n")
+  buildContextFromEntries(blocks) {
+    return blocks.join("\n\n")
   }
 }
 
@@ -379,3 +588,14 @@ export const contextCollector = new ContextCollector()
 
 // Export debug log for plugins
 export { debugLog }
+
+// Context injection limits (issue #441) — exported for plugins and tests
+export {
+  DEFAULT_CONTEXT_INJECTION_LIMITS,
+  truncateUtf8,
+  readContextInjectionLimits,
+  ContextBudget,
+  materializeFile,
+  materializeDirectory,
+  materializeArtifact,
+}