@mindfoldhq/trellis 0.6.6 → 0.6.8

package/dist/templates/zcode/agents/trellis-implement.md

@@ -16,19 +16,27 @@ You are already the `trellis-implement` sub-agent that the main session dispatch
 - If SessionStart context, workflow-state breadcrumbs, or workflow.md say to dispatch `trellis-implement` / `trellis-check`, treat that as a main-session instruction that is already satisfied by your current role.
 - Only the main session may dispatch Trellis implement/check agents. If more parallel work is needed, report that recommendation instead of spawning.
 
+## Trellis Context Loading Protocol
+
+Look for the `<!-- trellis-hook-injected -->` marker in your input above.
+
+- **If the marker is present**: prd / spec / research files have already been auto-loaded for you above. Proceed with the implementation work directly.
+- **If the marker is absent**: hook injection didn't fire. Find the active task path from your dispatch prompt's first line `Active task: <path>`, then Read `<task-path>/implement.jsonl`, each listed file, `<task-path>/prd.md`, `<task-path>/design.md` if present, and `<task-path>/implement.md` if present before doing the work.
+
 ## Context
 
 Before implementing, read:
 - `.trellis/workflow.md` - Project workflow
 - `.trellis/spec/` - Development guidelines
 - Task `prd.md` - Requirements document
-- Task `info.md` - Technical design (if exists)
+- Task `design.md` - Technical design (if exists)
+- Task `implement.md` - Execution plan (if exists)
 
 ## Core Responsibilities
 
 1. **Understand specs** - Read relevant spec files in `.trellis/spec/`
-2. **Understand requirements** - Read prd.md and info.md
-3. **Implement features** - Write code following specs and design
+2. **Understand task artifacts** - Read prd.md, design.md if present, and implement.md if present
+3. **Implement features** - Write code following specs and task artifacts
 4. **Self-check** - Ensure code quality
 5. **Report results** - Report completion status
 
@@ -53,10 +61,11 @@ Read relevant specs based on task type:
 
 ### 2. Understand Requirements
 
-Read the task's prd.md and info.md:
+Read the task's prd.md, design.md if present, and implement.md if present:
 
 - What are the core requirements
 - Key points of technical design
+- Implementation order, validation commands, and rollback points
 - Which files to modify/create
 
 ### 3. Implement Features

package/dist/templates/zcode/config.json

@@ -0,0 +1,42 @@
+{
+  "hooks": {
+    "enabled": true,
+    "events": {
+      "SessionStart": [
+        {
+          "matcher": "startup|clear|compact",
+          "hooks": [
+            {
+              "type": "command",
+              "command": "{{PYTHON_CMD}} \"${ZCODE_PROJECT_DIR}/.zcode/hooks/session-start.py\"",
+              "timeout": 30
+            }
+          ]
+        }
+      ],
+      "UserPromptSubmit": [
+        {
+          "hooks": [
+            {
+              "type": "command",
+              "command": "{{PYTHON_CMD}} \"${ZCODE_PROJECT_DIR}/.zcode/hooks/inject-workflow-state.py\"",
+              "timeout": 15
+            }
+          ]
+        }
+      ],
+      "PreToolUse": [
+        {
+          "matcher": "Agent|Task",
+          "hooks": [
+            {
+              "type": "command",
+              "command": "{{PYTHON_CMD}} \"${ZCODE_PROJECT_DIR}/.zcode/hooks/inject-subagent-context.py\"",
+              "timeout": 30
+            }
+          ]
+        }
+      ]
+    }
+  }
+}

package/dist/templates/zcode/index.d.ts

@@ -9,8 +9,17 @@
  * trellis-research is intentionally standalone: it does not receive the
  * implement/check prelude, and persists findings under the active task's
  * research directory instead.
+ *
+ * ZCode 3.x supports a workspace hook config at `.zcode/config.json`
+ * (SessionStart + UserPromptSubmit). Shared Python hook scripts are written
+ * to `.zcode/hooks/` and registered via the config. The config schema is the
+ * workspace form: `{ hooks: { enabled: true, events: { <Event>: [...] } } }`
+ * — distinct from plugin `hooks.json` files (no `enabled`/`events` wrapper).
  */
-import { type AgentTemplate } from "../template-utils.js";
+import { type AgentTemplate, type HookTemplate } from "../template-utils.js";
+export type { AgentTemplate, HookTemplate };
 /** Sub-agent definitions (trellis-implement, trellis-check, trellis-research). */
 export declare function getAllAgents(): AgentTemplate[];
+/** Hook configuration written to `.zcode/config.json` (workspace config form). */
+export declare function getHooksConfig(): HookTemplate;
 //# sourceMappingURL=index.d.ts.map

package/dist/templates/zcode/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/templates/zcode/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAEH,OAAO,EAAwB,KAAK,aAAa,EAAE,MAAM,sBAAsB,CAAC;AAIhF,kFAAkF;AAClF,wBAAgB,YAAY,IAAI,aAAa,EAAE,CAE9C"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/templates/zcode/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;GAiBG;AAEH,OAAO,EAEL,KAAK,aAAa,EAClB,KAAK,YAAY,EAClB,MAAM,sBAAsB,CAAC;AAE9B,YAAY,EAAE,aAAa,EAAE,YAAY,EAAE,CAAC;AAI5C,kFAAkF;AAClF,wBAAgB,YAAY,IAAI,aAAa,EAAE,CAE9C;AAED,kFAAkF;AAClF,wBAAgB,cAAc,IAAI,YAAY,CAE7C"}

package/dist/templates/zcode/index.js

@@ -9,11 +9,21 @@
  * trellis-research is intentionally standalone: it does not receive the
  * implement/check prelude, and persists findings under the active task's
  * research directory instead.
+ *
+ * ZCode 3.x supports a workspace hook config at `.zcode/config.json`
+ * (SessionStart + UserPromptSubmit). Shared Python hook scripts are written
+ * to `.zcode/hooks/` and registered via the config. The config schema is the
+ * workspace form: `{ hooks: { enabled: true, events: { <Event>: [...] } } }`
+ * — distinct from plugin `hooks.json` files (no `enabled`/`events` wrapper).
  */
-import { createTemplateReader } from "../template-utils.js";
-const { listMdAgents } = createTemplateReader(import.meta.url);
+import { createTemplateReader, } from "../template-utils.js";
+const { listMdAgents, getSettings } = createTemplateReader(import.meta.url);
 /** Sub-agent definitions (trellis-implement, trellis-check, trellis-research). */
 export function getAllAgents() {
     return listMdAgents();
 }
+/** Hook configuration written to `.zcode/config.json` (workspace config form). */
+export function getHooksConfig() {
+    return getSettings("config.json");
+}
 //# sourceMappingURL=index.js.map

package/dist/templates/zcode/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/templates/zcode/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;GAiBG;AAEH,OAAO,EACL,oBAAoB,GAGrB,MAAM,sBAAsB,CAAC;AAI9B,MAAM,EAAE,YAAY,EAAE,WAAW,EAAE,GAAG,oBAAoB,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;AAE5E,kFAAkF;AAClF,MAAM,UAAU,YAAY;IAC1B,OAAO,YAAY,EAAE,CAAC;AACxB,CAAC;AAED,kFAAkF;AAClF,MAAM,UAAU,cAAc;IAC5B,OAAO,WAAW,CAAC,aAAa,CAAC,CAAC;AACpC,CAAC"}

package/dist/types/ai-tools.d.ts

@@ -6,23 +6,23 @@
 /**
  * Supported AI coding tools
  */
-export type AITool = "claude-code" | "cursor" | "opencode" | "codex" | "kilo" | "kiro" | "gemini" | "antigravity" | "devin" | "qoder" | "codebuddy" | "copilot" | "droid" | "pi" | "reasonix" | "zcode" | "trae" | "omp";
+export type AITool = "claude-code" | "cursor" | "opencode" | "codex" | "kilo" | "kiro" | "gemini" | "antigravity" | "devin" | "qoder" | "codebuddy" | "copilot" | "droid" | "pi" | "reasonix" | "zcode" | "trae" | "omp" | "grok" | "kimi";
 /**
  * Template directory categories
  */
-export type TemplateDir = "common" | "claude" | "cursor" | "opencode" | "codex" | "kilo" | "kiro" | "gemini" | "antigravity" | "devin" | "qoder" | "codebuddy" | "copilot" | "droid" | "pi" | "reasonix" | "zcode" | "trae" | "omp";
+export type TemplateDir = "common" | "claude" | "cursor" | "opencode" | "codex" | "kilo" | "kiro" | "gemini" | "antigravity" | "devin" | "qoder" | "codebuddy" | "copilot" | "droid" | "pi" | "reasonix" | "zcode" | "trae" | "omp" | "grok" | "kimi";
 /**
  * CLI flag names for platform selection (e.g., --claude, --cursor, --kilo, --kiro, --gemini, --antigravity)
  * Must match keys in InitOptions (src/commands/init.ts)
  */
-export type CliFlag = "claude" | "cursor" | "opencode" | "codex" | "kilo" | "kiro" | "gemini" | "antigravity" | "devin" | "qoder" | "codebuddy" | "copilot" | "droid" | "pi" | "reasonix" | "zcode" | "trae" | "omp";
+export type CliFlag = "claude" | "cursor" | "opencode" | "codex" | "kilo" | "kiro" | "gemini" | "antigravity" | "devin" | "qoder" | "codebuddy" | "copilot" | "droid" | "pi" | "reasonix" | "zcode" | "trae" | "omp" | "grok" | "kimi";
 /**
  * Template context for placeholder resolution.
  * Controls how common templates are rendered per platform.
  */
 export interface TemplateContext {
     /** Prefix for cross-referencing other commands/skills */
-    cmdRefPrefix: "/trellis:" | "/trellis-" | "$" | "/" | "/skill trellis-";
+    cmdRefPrefix: "/trellis:" | "/trellis-" | "$" | "/" | "/skill trellis-" | "/skill:trellis-";
     /** Description of AI executor actions shown in role tables */
     executorAI: "Bash scripts or Task calls" | "Bash scripts or tool calls" | "Bash scripts or Agent calls" | "Bash scripts or file reads";
     /** Label for user-invocable actions */

package/dist/types/ai-tools.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"ai-tools.d.ts","sourceRoot":"","sources":["../../src/types/ai-tools.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH;;GAEG;AACH,MAAM,MAAM,MAAM,GACd,aAAa,GACb,QAAQ,GACR,UAAU,GACV,OAAO,GACP,MAAM,GACN,MAAM,GACN,QAAQ,GACR,aAAa,GACb,OAAO,GACP,OAAO,GACP,WAAW,GACX,SAAS,GACT,OAAO,GACP,IAAI,GACJ,UAAU,GACV,OAAO,GACP,MAAM,GACN,KAAK,GACL,MAAM,GACN,MAAM,CAAC;AAEX;;GAEG;AACH,MAAM,MAAM,WAAW,GACnB,QAAQ,GACR,QAAQ,GACR,QAAQ,GACR,UAAU,GACV,OAAO,GACP,MAAM,GACN,MAAM,GACN,QAAQ,GACR,aAAa,GACb,OAAO,GACP,OAAO,GACP,WAAW,GACX,SAAS,GACT,OAAO,GACP,IAAI,GACJ,UAAU,GACV,OAAO,GACP,MAAM,GACN,KAAK,GACL,MAAM,GACN,MAAM,CAAC;AAEX;;;GAGG;AACH,MAAM,MAAM,OAAO,GACf,QAAQ,GACR,QAAQ,GACR,UAAU,GACV,OAAO,GACP,MAAM,GACN,MAAM,GACN,QAAQ,GACR,aAAa,GACb,OAAO,GACP,OAAO,GACP,WAAW,GACX,SAAS,GACT,OAAO,GACP,IAAI,GACJ,UAAU,GACV,OAAO,GACP,MAAM,GACN,KAAK,GACL,MAAM,GACN,MAAM,CAAC;AAEX;;;GAGG;AACH,MAAM,WAAW,eAAe;IAC9B,yDAAyD;IACzD,YAAY,EACR,WAAW,GACX,WAAW,GACX,GAAG,GACH,GAAG,GACH,iBAAiB,GACjB,iBAAiB,CAAC;IACtB,8DAA8D;IAC9D,UAAU,EACN,4BAA4B,GAC5B,4BAA4B,GAC5B,6BAA6B,GAC7B,4BAA4B,CAAC;IACjC,uCAAuC;IACvC,eAAe,EACX,gBAAgB,GAChB,QAAQ,GACR,WAAW,GACX,SAAS,GACT,UAAU,CAAC;IACf,kEAAkE;IAClE,YAAY,EAAE,OAAO,CAAC;IACtB,0DAA0D;IAC1D,QAAQ,EAAE,OAAO,CAAC;IAClB;;;;;;;OAOG;IACH,OAAO,EAAE,OAAO,CAAC;CAClB;AAED;;GAEG;AACH,MAAM,WAAW,YAAY;IAC3B,+BAA+B;IAC/B,IAAI,EAAE,MAAM,CAAC;IACb,kDAAkD;IAClD,YAAY,EAAE,WAAW,EAAE,CAAC;IAC5B,kEAAkE;IAClE,SAAS,EAAE,MAAM,CAAC;IAClB;;;;OAIG;IACH,mBAAmB,CAAC,EAAE,OAAO,CAAC;IAC9B,kFAAkF;IAClF,iBAAiB,CAAC,EAAE,MAAM,EAAE,CAAC;IAC7B,qEAAqE;IACrE,OAAO,EAAE,OAAO,CAAC;IACjB,yEAAyE;IACzE,cAAc,EAAE,OAAO,CAAC;IACxB,+EAA+E;IAC/E,cAAc,EAAE,OAAO,CAAC;IACxB,sEAAsE;IACtE,eAAe,EAAE,eAAe,CAAC;CAClC;AAED;;;;;;;;;;GAUG;AACH,eAAO,MAAM,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,YAAY,CAmYjD,CAAC;AAEF;;GAEG;AACH,wBAAgB,aAAa,CAAC,IAAI,EAAE,MAAM,GAAG,YAAY,CAExD;AAED;;GAEG;AACH,wBAAgB,eAAe,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,EAAE,CAUtD;AAED;;GAEG;AACH,wBAAgB,eAAe,CAAC,IAAI,EAAE,MAAM,GAAG,WAAW,EAAE,CAE3D"}

package/dist/types/ai-tools.js

@@ -53,6 +53,12 @@ export const AI_TOOLS = {
         configDir: ".opencode",
         cliFlag: "opencode",
         defaultChecked: false,
+        // hasHooks: false — OpenCode has no session-start hook. The pre-v0.5.0
+        // `.opencode/commands/trellis/start.md` deprecation in
+        // migrations/manifests/0.5.0-beta.0.json assumed a hook would replace it;
+        // that never happened for OpenCode, so `resolveCommands`/`filterCommands`
+        // (see configurators/shared.ts) still generate `/start` as the live
+        // fallback command for this `agentCapable && !hasHooks` platform.
         hasPythonHooks: false,
         templateContext: {
             cmdRefPrefix: "/trellis:",
@@ -236,9 +242,14 @@ export const AI_TOOLS = {
         },
     },
     pi: {
+        // Pi also writes .agents/skills/, which is read by Cursor, Gemini CLI,
+        // GitHub Copilot, Amp, and Kimi Code. Keep that detail here rather than
+        // in `name` — `name` leaks verbatim into `trellis platforms` output and
+        // init checkboxes, where a long parenthetical reads badly.
         name: "Pi Agent",
         templateDirs: ["common", "pi"],
         configDir: ".pi",
+        supportsAgentSkills: true,
         cliFlag: "pi",
         defaultChecked: false,
         hasPythonHooks: false,
@@ -282,16 +293,21 @@ export const AI_TOOLS = {
             ".zcode/agents",
             ".zcode/commands",
             ".zcode/skills",
+            // Hooks assets written by configureZcode.
+            ".zcode/hooks",
         ],
         cliFlag: "zcode",
         defaultChecked: false,
-        hasPythonHooks: false,
+        hasPythonHooks: true,
         templateContext: {
             cmdRefPrefix: "/trellis:",
             executorAI: "Bash scripts or Agent calls",
             userActionLabel: "Skills",
             agentCapable: true,
-            hasHooks: false,
+            // ZCode (3.x) supports a workspace hook config at .zcode/config.json
+            // with SessionStart / UserPromptSubmit / PreToolUse events. PreToolUse
+            // can mutate sub-agent prompts, so ZCode is class-1 hook-inject.
+            hasHooks: true,
             cliFlag: "zcode",
         },
     },
@@ -327,6 +343,64 @@ export const AI_TOOLS = {
             cliFlag: "omp",
         },
     },
+    /**
+     * Grok Build (xAI) — class-2 pull-based platform.
+     *
+     * Phase 0 verified (Grok 0.2.101): skills/agents/AGENTS.md load correctly;
+     * Claude-style hook `additionalContext` is NOT injected into the model.
+     * Do not set hasHooks/hasPythonHooks true until Grok consumes hook stdout.
+     * Commands are flat under `.grok/commands/trellis-*.md` (Grok slash-command layout).
+     */
+    grok: {
+        name: "Grok Build",
+        templateDirs: ["common", "grok"],
+        configDir: ".grok",
+        extraManagedPaths: [".grok/skills", ".grok/commands", ".grok/agents"],
+        cliFlag: "grok",
+        defaultChecked: false,
+        hasPythonHooks: false,
+        templateContext: {
+            cmdRefPrefix: "/trellis-",
+            executorAI: "Bash scripts or Agent calls",
+            userActionLabel: "Skills",
+            agentCapable: true,
+            hasHooks: false,
+            cliFlag: "grok",
+        },
+    },
+    /**
+     * Kimi Code CLI — class-2 pull-based platform.
+     *
+     * Kimi reads project skills from `.kimi-code/skills/` AND the shared
+     * `.agents/skills/` (agentskills.io standard), so workflow/bundled skills go
+     * to the shared root via the neutral resolver (byte-identical to
+     * Codex/Gemini/Pi writes) while user-invocable entry points
+     * (`trellis-start` / `trellis-continue` / `trellis-finish-work`, invoked as
+     * `/skill:trellis-<name>`) and the Trellis sub-agent prompts live under
+     * `.kimi-code/skills/`.
+     *
+     * Kimi has no project-level hooks/settings file Trellis may write (hooks are
+     * user-level `~/.kimi-code/config.toml` only) and no project-level custom
+     * sub-agent definitions (only the built-in coder/explore/plan sub-agents), so
+     * the Trellis agent prompts ship as skills with the pull-based prelude.
+     */
+    kimi: {
+        name: "Kimi Code",
+        templateDirs: ["common", "kimi"],
+        configDir: ".kimi-code",
+        supportsAgentSkills: true,
+        cliFlag: "kimi",
+        defaultChecked: false,
+        hasPythonHooks: false,
+        templateContext: {
+            cmdRefPrefix: "/skill:trellis-",
+            executorAI: "Bash scripts or Agent calls",
+            userActionLabel: "Slash commands",
+            agentCapable: true,
+            hasHooks: false,
+            cliFlag: "kimi",
+        },
+    },
 };
 /**
  * Get the configuration for a specific AI tool

package/dist/types/ai-tools.js.map

@@ -1 +1 @@
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package/dist/utils/atomic-write.d.ts

@@ -0,0 +1,12 @@
+/**
+ * Write a file atomically: stream into a temp file in the same directory,
+ * then rename it over the target. A crash, Ctrl-C, or ENOSPC mid-write
+ * leaves the original file intact (or absent) — never truncated or
+ * half-written. The temp file shares the target's directory so the rename
+ * stays on one filesystem and is therefore atomic.
+ *
+ * On failure the temp file is removed on a best-effort basis and the
+ * original error is re-thrown.
+ */
+export declare function writeFileAtomic(filePath: string, data: string | Uint8Array): void;
+//# sourceMappingURL=atomic-write.d.ts.map

package/dist/utils/atomic-write.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"atomic-write.d.ts","sourceRoot":"","sources":["../../src/utils/atomic-write.ts"],"names":[],"mappings":"AAGA;;;;;;;;;GASG;AACH,wBAAgB,eAAe,CAC7B,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE,MAAM,GAAG,UAAU,GACxB,IAAI,CAcN"}

package/dist/utils/atomic-write.js

@@ -0,0 +1,30 @@
+import fs from "node:fs";
+import path from "node:path";
+/**
+ * Write a file atomically: stream into a temp file in the same directory,
+ * then rename it over the target. A crash, Ctrl-C, or ENOSPC mid-write
+ * leaves the original file intact (or absent) — never truncated or
+ * half-written. The temp file shares the target's directory so the rename
+ * stays on one filesystem and is therefore atomic.
+ *
+ * On failure the temp file is removed on a best-effort basis and the
+ * original error is re-thrown.
+ */
+export function writeFileAtomic(filePath, data) {
+    const dir = path.dirname(filePath);
+    const tmp = path.join(dir, `.${path.basename(filePath)}.${process.pid}.tmp`);
+    try {
+        fs.writeFileSync(tmp, data);
+        fs.renameSync(tmp, filePath);
+    }
+    catch (err) {
+        try {
+            fs.rmSync(tmp, { force: true });
+        }
+        catch {
+            // best-effort cleanup; surface the original write error
+        }
+        throw err;
+    }
+}
+//# sourceMappingURL=atomic-write.js.map

package/dist/utils/atomic-write.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"atomic-write.js","sourceRoot":"","sources":["../../src/utils/atomic-write.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,MAAM,SAAS,CAAC;AACzB,OAAO,IAAI,MAAM,WAAW,CAAC;AAE7B;;;;;;;;;GASG;AACH,MAAM,UAAU,eAAe,CAC7B,QAAgB,EAChB,IAAyB;IAEzB,MAAM,GAAG,GAAG,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAC;IACnC,MAAM,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,GAAG,EAAE,IAAI,IAAI,CAAC,QAAQ,CAAC,QAAQ,CAAC,IAAI,OAAO,CAAC,GAAG,MAAM,CAAC,CAAC;IAC7E,IAAI,CAAC;QACH,EAAE,CAAC,aAAa,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC;QAC5B,EAAE,CAAC,UAAU,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAC;IAC/B,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,IAAI,CAAC;YACH,EAAE,CAAC,MAAM,CAAC,GAAG,EAAE,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC,CAAC;QAClC,CAAC;QAAC,MAAM,CAAC;YACP,wDAAwD;QAC1D,CAAC;QACD,MAAM,GAAG,CAAC;IACZ,CAAC;AACH,CAAC"}

package/dist/utils/file-writer.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"file-writer.d.ts","sourceRoot":"","sources":["../../src/utils/file-writer.ts"],"names":[],"mappings":"AAQA,MAAM,MAAM,SAAS,GAAG,KAAK,GAAG,OAAO,GAAG,MAAM,GAAG,QAAQ,CAAC;AAE5D,MAAM,WAAW,YAAY;IAC3B,IAAI,EAAE,SAAS,CAAC;CACjB;AASD,wBAAgB,YAAY,CAAC,IAAI,EAAE,SAAS,GAAG,IAAI,CAElD;AAED,wBAAgB,YAAY,IAAI,SAAS,CAExC;AAkBD;;;;;;;;;GASG;AACH,wBAAgB,oBAAoB,CAAC,GAAG,EAAE,MAAM,GAAG,GAAG,CAAC,MAAM,CAAC,CAK7D;AAED,uFAAuF;AACvF,wBAAgB,mBAAmB,IAAI,IAAI,CAG1C;AAsCD;;;;;;;;GAQG;AACH,wBAAsB,SAAS,CAC7B,QAAQ,EAAE,MAAM,EAChB,OAAO,EAAE,MAAM,EACf,OAAO,CAAC,EAAE;IAAE,UAAU,CAAC,EAAE,OAAO,CAAA;CAAE,GACjC,OAAO,CAAC,OAAO,CAAC,CA0HlB;AAED;;GAEG;AACH,wBAAgB,SAAS,CAAC,OAAO,EAAE,MAAM,GAAG,IAAI,CAE/C"}

package/dist/utils/file-writer.js

@@ -2,6 +2,7 @@ import fs from "node:fs";
 import path from "node:path";
 import chalk from "chalk";
 import inquirer from "inquirer";
+import { writeFileAtomic } from "./atomic-write.js";
 import { toPosix } from "./posix.js";
 // Global write mode (set from CLI options)
 let globalWriteMode = "ask";
@@ -72,7 +73,7 @@ function appendToFile(filePath, content, options) {
     const newContent = existingContent.endsWith("\n")
         ? existingContent + content
         : existingContent + "\n" + content;
-    fs.writeFileSync(filePath, newContent);
+    writeFileAtomic(filePath, newContent);
     if (options?.executable) {
         fs.chmodSync(filePath, "755");
     }
@@ -91,7 +92,7 @@ export async function writeFile(filePath, content, options) {
     const displayPath = getRelativePath(filePath);
     if (!exists) {
         // File doesn't exist, write directly
-        fs.writeFileSync(filePath, content);
+        writeFileAtomic(filePath, content);
         if (options?.executable) {
             fs.chmodSync(filePath, "755");
         }
@@ -114,7 +115,7 @@ export async function writeFile(filePath, content, options) {
         ? "skip"
         : globalWriteMode;
     if (mode === "force") {
-        fs.writeFileSync(filePath, content);
+        writeFileAtomic(filePath, content);
         if (options?.executable) {
             fs.chmodSync(filePath, "755");
         }
@@ -158,7 +159,7 @@ export async function writeFile(filePath, content, options) {
         return false;
     }
     if (action === "overwrite") {
-        fs.writeFileSync(filePath, content);
+        writeFileAtomic(filePath, content);
         if (options?.executable) {
             fs.chmodSync(filePath, "755");
         }
@@ -178,7 +179,7 @@ export async function writeFile(filePath, content, options) {
     }
     if (action === "overwrite-all") {
         globalWriteMode = "force";
-        fs.writeFileSync(filePath, content);
+        writeFileAtomic(filePath, content);
         if (options?.executable) {
             fs.chmodSync(filePath, "755");
         }

package/dist/utils/file-writer.js.map

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package/dist/utils/registry-config.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"registry-config.d.ts","sourceRoot":"","sources":["../../src/utils/registry-config.ts"],"names":[],"mappings":"AAOA,MAAM,WAAW,kBAAkB;IACjC,MAAM,EAAE,MAAM,CAAC;IACf,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AAmBD,wBAAgB,sBAAsB,CAAC,GAAG,EAAE,MAAM,GAAG,kBAAkB,GAAG,IAAI,CAmD7E;AAED,wBAAgB,uBAAuB,CACrC,GAAG,EAAE,MAAM,EACX,MAAM,EAAE,kBAAkB,GACzB,IAAI,CAmGN"}

package/dist/utils/registry-config.js

@@ -1,6 +1,7 @@
 import fs from "node:fs";
 import path from "node:path";
 import { DIR_NAMES } from "../constants/paths.js";
+import { writeFileAtomic } from "./atomic-write.js";
 import { toPosix } from "./posix.js";
 function configPath(cwd) {
     return path.join(cwd, DIR_NAMES.WORKFLOW, "config.yaml");
@@ -150,7 +151,7 @@ export function writeSpecRegistryConfig(cwd, config) {
                 output.push(...specLines);
             }
         }
-        fs.writeFileSync(filePath, output.join("\n"), "utf-8");
+        writeFileAtomic(filePath, output.join("\n"));
         return;
     }
     const section = [
@@ -166,6 +167,6 @@ export function writeSpecRegistryConfig(cwd, config) {
         ...specLines,
         "",
     ].join("\n");
-    fs.writeFileSync(filePath, content.trimEnd() + "\n" + section, "utf-8");
+    writeFileAtomic(filePath, content.trimEnd() + "\n" + section);
 }
 //# sourceMappingURL=registry-config.js.map

package/dist/utils/registry-config.js.map

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package/dist/utils/template-fetcher.d.ts.map

@@ -1 +1 @@
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package/dist/utils/template-fetcher.js

@@ -606,9 +606,34 @@ export async function downloadWithStrategy(templatePath, destDir, strategy, repo
     if (strategy === "skip" && exists) {
         return false;
     }
-    // overwrite: Delete existing directory first
+    // overwrite: Download to a temp dir first, then swap it in. Deleting
+    // destDir up-front and downloading in place would destroy the user's
+    // existing spec if the download fails (network timeout, etc.) — the
+    // operation they asked for never completed, yet their data is gone.
     if (strategy === "overwrite" && exists) {
-        await fs.promises.rm(destDir, { recursive: true });
+        const tempDir = path.join(os.tmpdir(), `trellis-template-${Date.now()}`);
+        try {
+            await withTimeout(downloadTemplate(gigetSource, {
+                dir: tempDir,
+            }), TIMEOUTS.DOWNLOAD_MS, "Template download");
+            // Download succeeded — only now is it safe to replace the old dir.
+            // copyMissing into a freshly removed dir copies everything, and works
+            // across filesystems (tempDir lives in os.tmpdir()).
+            await fs.promises.rm(destDir, { recursive: true, force: true });
+            await copyMissing(tempDir, destDir);
+        }
+        finally {
+            // Best-effort cleanup; also settles giget's orphaned download promise
+            // on timeout (giget has no AbortSignal, so removing the dir ENOENTs it).
+            // A rejected rm (EBUSY/EPERM) must not replace the download outcome.
+            try {
+                await fs.promises.rm(tempDir, { recursive: true, force: true });
+            }
+            catch {
+                // Best-effort cleanup
+            }
+        }
+        return true;
     }
     // append: Download to temp dir, then merge missing files
     if (strategy === "append" && exists) {
@@ -616,7 +641,6 @@ export async function downloadWithStrategy(templatePath, destDir, strategy, repo
         try {
             await withTimeout(downloadTemplate(gigetSource, {
                 dir: tempDir,
-                preferOffline: true,
             }), TIMEOUTS.DOWNLOAD_MS, "Template download");
             await copyMissing(tempDir, destDir);
         }
@@ -636,8 +660,14 @@ export async function downloadWithStrategy(templatePath, destDir, strategy, repo
             throw error;
         }
         finally {
-            // Clean up temp directory
-            await fs.promises.rm(tempDir, { recursive: true, force: true });
+            // Clean up temp directory. A rejected rm (EBUSY/EPERM) must not
+            // replace the download outcome.
+            try {
+                await fs.promises.rm(tempDir, { recursive: true, force: true });
+            }
+            catch {
+                // Best-effort cleanup
+            }
         }
         return true;
     }
@@ -645,7 +675,6 @@ export async function downloadWithStrategy(templatePath, destDir, strategy, repo
     try {
         await withTimeout(downloadTemplate(gigetSource, {
             dir: destDir,
-            preferOffline: true,
         }), TIMEOUTS.DOWNLOAD_MS, "Template download");
     }
     catch (error) {