@mindfoldhq/trellis 0.6.0-beta.8 → 0.6.0-rc.0

package/dist/utils/file-writer.js

@@ -2,6 +2,7 @@ import fs from "node:fs";
 import path from "node:path";
 import chalk from "chalk";
 import inquirer from "inquirer";
+import { toPosix } from "./posix.js";
 // Global write mode (set from CLI options)
 let globalWriteMode = "ask";
 export function setWriteMode(mode) {
@@ -10,6 +11,51 @@ export function setWriteMode(mode) {
 export function getWriteMode() {
     return globalWriteMode;
 }
+// ---------------------------------------------------------------------------
+// Write recording
+//
+// `trellis init` uses recording to capture exactly which files were actually
+// written this run (vs skipped because they already existed). The captured
+// set is what `.template-hashes.json` should contain — NOT a blind directory
+// walk of `.codex/` / `.claude/` / etc, which would include user-owned files
+// that pre-dated init. See `pruneOrphanManifestKeys` for the self-heal side
+// of the same contract.
+// ---------------------------------------------------------------------------
+/** When recording is active, every actual `writeFile` disk write appends here. */
+let writeRecorder = null;
+/** Project root used to convert absolute write paths to POSIX-relative keys. */
+let writeRecorderRoot = null;
+/**
+ * Begin recording every write into the returned Set. Calls accumulate into the
+ * same set until `stopRecordingWrites` runs. POSIX relative paths (relative to
+ * `cwd`) are stored, matching `.template-hashes.json` keys.
+ *
+ * Nested recording sessions are NOT supported — the caller must ensure
+ * `stopRecordingWrites` runs before the next `startRecordingWrites`. Failure
+ * is silent (the second `start` replaces the first set), so callers should
+ * always pair start/stop in try/finally.
+ */
+export function startRecordingWrites(cwd) {
+    const sink = new Set();
+    writeRecorder = sink;
+    writeRecorderRoot = cwd;
+    return sink;
+}
+/** End recording. Subsequent writes are not captured until `start` is called again. */
+export function stopRecordingWrites() {
+    writeRecorder = null;
+    writeRecorderRoot = null;
+}
+/** Record a successful write. Called internally by `writeFile`. */
+function recordWrite(absPath) {
+    if (!writeRecorder || !writeRecorderRoot)
+        return;
+    const rel = path.relative(writeRecorderRoot, absPath);
+    // Defensive: skip writes outside cwd (no meaningful manifest key).
+    if (rel.startsWith("..") || path.isAbsolute(rel))
+        return;
+    writeRecorder.add(toPosix(rel));
+}
 /**
  * Get relative path from cwd for display
  */
@@ -49,12 +95,15 @@ export async function writeFile(filePath, content, options) {
         if (options?.executable) {
             fs.chmodSync(filePath, "755");
         }
+        recordWrite(filePath);
         return true;
     }
     // File exists, check if content is identical
     const existingContent = fs.readFileSync(filePath, "utf-8");
     if (existingContent === content) {
-        // Content identical, skip silently (no output)
+        // Content identical, but no disk write happened. Do not record it for
+        // init-time manifests: pre-existing user files can legitimately be
+        // byte-identical to a Trellis template and still not be Trellis-owned.
         return false;
     }
     // File exists with different content, handle based on mode.
@@ -70,15 +119,22 @@ export async function writeFile(filePath, content, options) {
             fs.chmodSync(filePath, "755");
         }
         console.log(chalk.yellow(`  ↻ Overwritten: ${displayPath}`));
+        recordWrite(filePath);
         return true;
     }
     if (mode === "skip") {
         console.log(chalk.gray(`  ○ Skipped: ${displayPath} (already exists)`));
+        // Skipped: trellis did NOT write this file — caller should not track it
+        // in the manifest. This is the AGENTS.md skip-existing case.
         return false;
     }
     if (mode === "append") {
         appendToFile(filePath, content, options);
         console.log(chalk.blue(`  + Appended: ${displayPath}`));
+        // Append: trellis added trellis content to a user-owned file. Tracking
+        // is risky here (uninstall would unlink the whole file), so we do NOT
+        // record appended files. Users on `--append` get a fresh manifest miss
+        // on next update; that's the safer default.
         return true;
     }
     // mode === 'ask': Interactive prompt
@@ -107,6 +163,7 @@ export async function writeFile(filePath, content, options) {
             fs.chmodSync(filePath, "755");
         }
         console.log(chalk.yellow(`  ↻ Overwritten: ${displayPath}`));
+        recordWrite(filePath);
         return true;
     }
     if (action === "append") {
@@ -126,6 +183,7 @@ export async function writeFile(filePath, content, options) {
             fs.chmodSync(filePath, "755");
         }
         console.log(chalk.yellow(`  ↻ Overwritten: ${displayPath}`));
+        recordWrite(filePath);
         return true;
     }
     if (action === "append-all") {

package/dist/utils/file-writer.js.map

@@ -1 +1 @@
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package/dist/utils/manifest-prune.d.ts

@@ -0,0 +1,61 @@
+/**
+ * Self-heal poisoned `.template-hashes.json` manifests.
+ *
+ * Versions before this fix walked `.codex/`, `.claude/`, etc. with a blind
+ * recursive scan when computing the manifest, so they hashed user-owned
+ * runtime data (`.codex/sessions/*`, `.claude/projects/*.jsonl`, pre-existing
+ * `AGENTS.md`, user-added `.codex/skills/<custom>/`, …). On uninstall, every
+ * manifest entry is unlinked, which silently deletes user data.
+ *
+ * `pruneOrphanManifestKeys` removes any manifest entry that no current
+ * platform configurator owns. The two entry points that consume it are
+ * `trellis update` (before migration classification) and `trellis uninstall`
+ * (before plan building). Together they ensure existing poisoned manifests
+ * self-correct on the next routine command.
+ *
+ * Rules:
+ *   - `.trellis/*` entries are ALWAYS kept. `trellis uninstall` removes
+ *     `.trellis/` wholesale via `fs.rmSync(..., { recursive: true })`, so
+ *     manifest accuracy there doesn't affect uninstall data-loss. `update`
+ *     also relies on these entries to detect user-modified workflow files.
+ *   - Root-level `AGENTS.md` is kept only when it still looks Trellis-managed
+ *     (contains the managed block markers) or is missing on disk. This
+ *     self-heals old poisoned manifests for user-owned AGENTS.md files that
+ *     predated init and were skipped.
+ *   - Paths referenced by `from`/`to` of any migration manifest entry
+ *     (rename, rename-dir, delete, safe-file-delete) are preserved. Pruning
+ *     them would prevent legitimate pending migrations from finding their
+ *     source/target.
+ *   - Everything else: if the path is not in the union of
+ *     `collectPlatformTemplates()` for currently-configured platforms, it is
+ *     pruned. This matches "files trellis actually wrote during init/update".
+ */
+import type { AITool } from "../types/ai-tools.js";
+import type { TemplateHashes } from "../types/migration.js";
+export interface PruneResult {
+    /** Manifest keys removed (POSIX-style relative paths). */
+    pruned: string[];
+    /** The post-prune manifest (saved to disk only when `pruned.length > 0`). */
+    hashes: TemplateHashes;
+}
+export interface PruneOptions {
+    /**
+     * Save the pruned manifest to `.template-hashes.json`. Defaults to true.
+     * Callers can pass `false` to compute the prune without mutating disk
+     * (dry-run, change-analysis passes).
+     */
+    persist?: boolean;
+}
+/**
+ * Walk the manifest and split it into kept vs pruned entries.
+ *
+ * @param cwd  Project root — used to save the rewritten manifest.
+ * @param configuredPlatforms Output of `getConfiguredPlatforms(cwd)` — caller
+ *   resolves this so we don't have to re-walk the filesystem.
+ * @param hashes Already-loaded manifest contents. Passing it in (vs reading
+ *   from disk) lets the caller chain `loadHashes` → prune → use the result.
+ * @param options.persist When true (default), saves the pruned manifest to
+ *   disk. Pass `false` for dry-run flows.
+ */
+export declare function pruneOrphanManifestKeys(cwd: string, configuredPlatforms: readonly AITool[], hashes: TemplateHashes, options?: PruneOptions): PruneResult;
+//# sourceMappingURL=manifest-prune.d.ts.map

package/dist/utils/manifest-prune.d.ts.map

@@ -0,0 +1 @@
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package/dist/utils/manifest-prune.js

@@ -0,0 +1,136 @@
+/**
+ * Self-heal poisoned `.template-hashes.json` manifests.
+ *
+ * Versions before this fix walked `.codex/`, `.claude/`, etc. with a blind
+ * recursive scan when computing the manifest, so they hashed user-owned
+ * runtime data (`.codex/sessions/*`, `.claude/projects/*.jsonl`, pre-existing
+ * `AGENTS.md`, user-added `.codex/skills/<custom>/`, …). On uninstall, every
+ * manifest entry is unlinked, which silently deletes user data.
+ *
+ * `pruneOrphanManifestKeys` removes any manifest entry that no current
+ * platform configurator owns. The two entry points that consume it are
+ * `trellis update` (before migration classification) and `trellis uninstall`
+ * (before plan building). Together they ensure existing poisoned manifests
+ * self-correct on the next routine command.
+ *
+ * Rules:
+ *   - `.trellis/*` entries are ALWAYS kept. `trellis uninstall` removes
+ *     `.trellis/` wholesale via `fs.rmSync(..., { recursive: true })`, so
+ *     manifest accuracy there doesn't affect uninstall data-loss. `update`
+ *     also relies on these entries to detect user-modified workflow files.
+ *   - Root-level `AGENTS.md` is kept only when it still looks Trellis-managed
+ *     (contains the managed block markers) or is missing on disk. This
+ *     self-heals old poisoned manifests for user-owned AGENTS.md files that
+ *     predated init and were skipped.
+ *   - Paths referenced by `from`/`to` of any migration manifest entry
+ *     (rename, rename-dir, delete, safe-file-delete) are preserved. Pruning
+ *     them would prevent legitimate pending migrations from finding their
+ *     source/target.
+ *   - Everything else: if the path is not in the union of
+ *     `collectPlatformTemplates()` for currently-configured platforms, it is
+ *     pruned. This matches "files trellis actually wrote during init/update".
+ */
+import fs from "node:fs";
+import path from "node:path";
+import { collectPlatformTemplates } from "../configurators/index.js";
+import { FILE_NAMES } from "../constants/paths.js";
+import { getAllMigrations } from "../migrations/index.js";
+import { saveHashes } from "./template-hash.js";
+import { toPosix } from "./posix.js";
+const TRELLIS_BLOCK_START = "<!-- TRELLIS:START -->";
+const TRELLIS_BLOCK_END = "<!-- TRELLIS:END -->";
+/**
+ * Compute the union of "what trellis writes" across:
+ *   - every configured platform's collectTemplates() output
+ *   - root-level AGENTS.md when it still carries Trellis managed-block markers
+ *   - every migration manifest's from/to path (preserve so legitimate
+ *     pending migrations can find their source/target)
+ */
+function buildKnownKeys(configuredPlatforms) {
+    const known = new Set();
+    for (const id of configuredPlatforms) {
+        const templates = collectPlatformTemplates(id);
+        if (!templates)
+            continue;
+        for (const key of templates.keys()) {
+            known.add(toPosix(key));
+        }
+    }
+    // Preserve any path referenced by a migration: legitimate pending
+    // rename/delete operations need to resolve their `from` (and the target's
+    // hash record for `to`) even if the current registry doesn't list it.
+    for (const migration of getAllMigrations()) {
+        if (migration.from)
+            known.add(toPosix(migration.from));
+        if (migration.to)
+            known.add(toPosix(migration.to));
+    }
+    return known;
+}
+/**
+ * Root-level AGENTS.md needs special handling because it has no platform
+ * registry owner. New fixed inits record it only when written, but old
+ * manifests may contain a user-owned AGENTS.md that init skipped. The
+ * managed block markers are the least destructive ownership signal: no
+ * markers means preserve the user's file by pruning the stale manifest key.
+ */
+function shouldKeepAgentsMd(cwd) {
+    const fullPath = path.join(cwd, FILE_NAMES.AGENTS);
+    if (!fs.existsSync(fullPath)) {
+        return true;
+    }
+    try {
+        const content = fs.readFileSync(fullPath, "utf-8");
+        return (content.includes(TRELLIS_BLOCK_START) &&
+            content.includes(TRELLIS_BLOCK_END));
+    }
+    catch {
+        return true;
+    }
+}
+/**
+ * Walk the manifest and split it into kept vs pruned entries.
+ *
+ * @param cwd  Project root — used to save the rewritten manifest.
+ * @param configuredPlatforms Output of `getConfiguredPlatforms(cwd)` — caller
+ *   resolves this so we don't have to re-walk the filesystem.
+ * @param hashes Already-loaded manifest contents. Passing it in (vs reading
+ *   from disk) lets the caller chain `loadHashes` → prune → use the result.
+ * @param options.persist When true (default), saves the pruned manifest to
+ *   disk. Pass `false` for dry-run flows.
+ */
+export function pruneOrphanManifestKeys(cwd, configuredPlatforms, hashes, options = {}) {
+    const persist = options.persist ?? true;
+    const known = buildKnownKeys(configuredPlatforms);
+    const pruned = [];
+    const kept = {};
+    for (const [rawKey, value] of Object.entries(hashes)) {
+        const key = toPosix(rawKey);
+        // Always preserve .trellis/ entries — they're for the workflow tree
+        // which uninstall removes wholesale and which update needs for
+        // modified-file detection.
+        if (key.startsWith(".trellis/") || key === ".trellis") {
+            kept[key] = value;
+            continue;
+        }
+        if (key === FILE_NAMES.AGENTS) {
+            if (shouldKeepAgentsMd(cwd)) {
+                kept[key] = value;
+            }
+            else {
+                pruned.push(key);
+            }
+            continue;
+        }
+        if (known.has(key)) {
+            kept[key] = value;
+            continue;
+        }
+        pruned.push(key);
+    }
+    if (persist && pruned.length > 0) {
+        saveHashes(cwd, kept);
+    }
+    return { pruned, hashes: kept };
+}
+//# sourceMappingURL=manifest-prune.js.map

package/dist/utils/manifest-prune.js.map

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package/dist/utils/registry-config.d.ts

@@ -0,0 +1,7 @@
+export interface SpecRegistryConfig {
+    source: string;
+    template?: string;
+}
+export declare function loadSpecRegistryConfig(cwd: string): SpecRegistryConfig | null;
+export declare function writeSpecRegistryConfig(cwd: string, config: SpecRegistryConfig): void;
+//# sourceMappingURL=registry-config.d.ts.map

package/dist/utils/registry-config.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"registry-config.d.ts","sourceRoot":"","sources":["../../src/utils/registry-config.ts"],"names":[],"mappings":"AAMA,MAAM,WAAW,kBAAkB;IACjC,MAAM,EAAE,MAAM,CAAC;IACf,QAAQ,CAAC,EAAE,MAAM,CAAC;CACnB;AAmBD,wBAAgB,sBAAsB,CAAC,GAAG,EAAE,MAAM,GAAG,kBAAkB,GAAG,IAAI,CAmD7E;AAED,wBAAgB,uBAAuB,CACrC,GAAG,EAAE,MAAM,EACX,MAAM,EAAE,kBAAkB,GACzB,IAAI,CAmGN"}

package/dist/utils/registry-config.js

@@ -0,0 +1,171 @@
+import fs from "node:fs";
+import path from "node:path";
+import { DIR_NAMES } from "../constants/paths.js";
+import { toPosix } from "./posix.js";
+function configPath(cwd) {
+    return path.join(cwd, DIR_NAMES.WORKFLOW, "config.yaml");
+}
+function stripYamlScalar(value) {
+    return value.trim().replace(/^['"]|['"]$/g, "");
+}
+function specRegistryLines(config) {
+    const normalizedSource = toPosix(config.source);
+    return [
+        "  spec:",
+        `    source: ${normalizedSource}`,
+        ...(config.template ? [`    template: ${config.template}`] : []),
+    ];
+}
+export function loadSpecRegistryConfig(cwd) {
+    const filePath = configPath(cwd);
+    if (!fs.existsSync(filePath))
+        return null;
+    const lines = fs.readFileSync(filePath, "utf-8").split("\n");
+    let inRegistry = false;
+    let inSpec = false;
+    let source = null;
+    let template;
+    for (const line of lines) {
+        const trimmed = line.trimEnd();
+        if (/^registry:\s*$/.test(trimmed)) {
+            inRegistry = true;
+            inSpec = false;
+            continue;
+        }
+        if (inRegistry && /^\s{2}spec:\s*$/.test(trimmed)) {
+            inSpec = true;
+            continue;
+        }
+        if (inRegistry && trimmed !== "" && !trimmed.startsWith(" ")) {
+            if (source)
+                return { source, ...(template ? { template } : {}) };
+            inRegistry = false;
+            inSpec = false;
+            continue;
+        }
+        if (inSpec) {
+            const sourceMatch = trimmed.match(/^\s{4}source:\s+(.+)$/);
+            if (sourceMatch) {
+                source = stripYamlScalar(sourceMatch[1]);
+                continue;
+            }
+            const templateMatch = trimmed.match(/^\s{4}template:\s+(.+)$/);
+            if (templateMatch) {
+                template = stripYamlScalar(templateMatch[1]);
+                continue;
+            }
+            if (trimmed !== "" && !trimmed.startsWith("    ")) {
+                if (source)
+                    return { source, ...(template ? { template } : {}) };
+                inSpec = false;
+            }
+        }
+    }
+    if (source)
+        return { source, ...(template ? { template } : {}) };
+    return null;
+}
+export function writeSpecRegistryConfig(cwd, config) {
+    const filePath = configPath(cwd);
+    if (!fs.existsSync(filePath))
+        return;
+    const normalizedSource = toPosix(config.source);
+    const specLines = specRegistryLines(config);
+    const content = fs.readFileSync(filePath, "utf-8");
+    if (/^registry:\s*$/m.test(content)) {
+        const lines = content.split("\n");
+        const output = [];
+        let inRegistry = false;
+        let inSpec = false;
+        let sawSpec = false;
+        let wroteSource = false;
+        let wroteTemplate = false;
+        for (const line of lines) {
+            const trimmed = line.trimEnd();
+            if (/^registry:\s*$/.test(trimmed)) {
+                inRegistry = true;
+                inSpec = false;
+                sawSpec = false;
+                wroteSource = false;
+                output.push(line);
+                continue;
+            }
+            if (inRegistry && trimmed !== "" && !trimmed.startsWith(" ")) {
+                if (inSpec) {
+                    if (!wroteSource)
+                        output.push(`    source: ${normalizedSource}`);
+                    if (config.template && !wroteTemplate) {
+                        output.push(`    template: ${config.template}`);
+                    }
+                }
+                else if (!sawSpec) {
+                    output.push(...specLines);
+                }
+                inRegistry = false;
+                inSpec = false;
+            }
+            if (inRegistry && /^\s{2}spec:\s*$/.test(trimmed)) {
+                inSpec = true;
+                sawSpec = true;
+                wroteSource = false;
+                wroteTemplate = false;
+                output.push(line);
+                continue;
+            }
+            if (inSpec && /^\s{4}source:\s+/.test(trimmed)) {
+                output.push(`    source: ${normalizedSource}`);
+                wroteSource = true;
+                continue;
+            }
+            if (inSpec && /^\s{4}template:\s+/.test(trimmed)) {
+                if (config.template) {
+                    output.push(`    template: ${config.template}`);
+                    wroteTemplate = true;
+                }
+                continue;
+            }
+            if (inSpec && trimmed !== "" && !trimmed.startsWith("    ")) {
+                if (!wroteSource)
+                    output.push(`    source: ${normalizedSource}`);
+                if (config.template && !wroteTemplate) {
+                    output.push(`    template: ${config.template}`);
+                    wroteTemplate = true;
+                }
+                inSpec = false;
+            }
+            if (inRegistry && trimmed !== "" && !trimmed.startsWith(" ")) {
+                inRegistry = false;
+            }
+            output.push(line);
+        }
+        if (inRegistry) {
+            if (inSpec) {
+                if (!wroteSource)
+                    output.push(`    source: ${normalizedSource}`);
+                if (config.template && !wroteTemplate) {
+                    output.push(`    template: ${config.template}`);
+                }
+            }
+            else if (!sawSpec) {
+                output.push(...specLines);
+            }
+        }
+        fs.writeFileSync(filePath, output.join("\n"), "utf-8");
+        return;
+    }
+    const section = [
+        "",
+        "#-------------------------------------------------------------------------------",
+        "# Registry",
+        "#-------------------------------------------------------------------------------",
+        "",
+        "# Source used to install .trellis/spec. trellis update refreshes this",
+        "# hash-tracked spec template while preserving local edits through the",
+        "# normal update conflict flow.",
+        "registry:",
+        ...specLines,
+        "",
+    ].join("\n");
+    fs.writeFileSync(filePath, content.trimEnd() + "\n" + section, "utf-8");
+}
+//# sourceMappingURL=registry-config.js.map

package/dist/utils/registry-config.js.map

@@ -0,0 +1 @@
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package/dist/utils/task-json.d.ts

@@ -1,46 +1,13 @@
 /**
- * Canonical task.json shape — single source of truth shared by all TS writers.
+ * Canonical task.json shape — single source of truth shared by all TS
+ * writers. The canonical types and factory now live in the
+ * `@mindfoldhq/trellis-core` task API; this module re-exports them under
+ * the legacy `TaskJson` / `emptyTaskJson` names for CLI call sites.
  *
- * The runtime Python writer is `.trellis/scripts/common/task_store.py` in
- * `cmd_create` (lines ~147-172). This TS factory mirrors that 24-field shape
- * so bootstrap tasks (trellis init) and migration tasks (trellis update
- * --migrate) produce structurally identical task.json files.
- *
- * Field names, order, and null defaults match task_store.py exactly.
- */
-export interface TaskJson {
-    id: string;
-    name: string;
-    title: string;
-    description: string;
-    status: string;
-    dev_type: string | null;
-    scope: string | null;
-    package: string | null;
-    priority: string;
-    creator: string;
-    assignee: string;
-    createdAt: string;
-    completedAt: string | null;
-    branch: string | null;
-    base_branch: string | null;
-    worktree_path: string | null;
-    commit: string | null;
-    pr_url: string | null;
-    subtasks: string[];
-    children: string[];
-    parent: string | null;
-    relatedFiles: string[];
-    notes: string;
-    meta: Record<string, unknown>;
-}
-/**
- * Produce a fully-populated canonical-shape TaskJson.
- *
- * All 24 fields are emitted in canonical order. `overrides` shallow-merges on
- * top — callers should supply the per-task values (id, name, title, assignee,
- * createdAt, etc.) and leave null-default fields untouched unless they have a
- * real value.
+ * New code should prefer `TrellisTaskRecord` / `emptyTaskRecord` from
+ * `@mindfoldhq/trellis-core/task` directly.
  */
-export declare function emptyTaskJson(overrides?: Partial<TaskJson>): TaskJson;
+import { emptyTaskRecord, type TrellisTaskRecord } from "@mindfoldhq/trellis-core/task";
+export type TaskJson = TrellisTaskRecord;
+export declare const emptyTaskJson: typeof emptyTaskRecord;
 //# sourceMappingURL=task-json.d.ts.map

package/dist/utils/task-json.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"task-json.d.ts","sourceRoot":"","sources":["../../src/utils/task-json.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EACL,eAAe,EACf,KAAK,iBAAiB,EACvB,MAAM,+BAA+B,CAAC;AAEvC,MAAM,MAAM,QAAQ,GAAG,iBAAiB,CAAC;AAEzC,eAAO,MAAM,aAAa,wBAAkB,CAAC"}