@mindfoldhq/trellis 0.5.9 → 0.5.11

package/dist/templates/trellis/scripts/common/safe_commit.py

@@ -0,0 +1,255 @@
+"""
+Safe git-add helpers for Trellis-owned paths.
+
+Why this module exists
+----------------------
+A real user incident: a project's `.gitignore` listed `.trellis/` (company-wide
+template / personal habit). When `add_session.py` and `task.py archive` ran
+their auto-commit and `git add` failed with `ignored by .gitignore`, the AI
+agent driving the workflow "fixed" it by retrying with
+`git add -f .trellis/` — which fan-out-included every ignored subtree
+(`.trellis/.backup-*/`, `.trellis/worktrees/`, `.trellis/.template-hashes.json`,
+`.trellis/.runtime/`), committing 548 files / 83474 lines of caches/backups.
+
+Design
+------
+- Scripts only stage SPECIFIC product paths (journal files, index.md, the
+  current task dir, the archive dir). Never the whole `.trellis/` tree.
+- If plain `git add <specific>` fails with "ignored by", DO NOT retry with
+  ``-f``. The presence of `.trellis/` in `.gitignore` is treated as user
+  intent ("keep .trellis/ local-only"). The script warns and skips the
+  auto-commit; users who want auto-staging can either fix their `.gitignore`
+  or set ``session_auto_commit: false`` and manage git themselves.
+- The warning includes a negative example: ``Do NOT use `git add -f .trellis/` ...``
+  so any AI rereading the log doesn't reinvent the bug.
+
+History note: 0.5.10 introduced an automatic ``git add -f`` retry on the
+specific paths. That was reverted in 0.5.11 — auto-forcing into a tree the
+user had gitignored violates user intent even when the path list is narrow.
+The wider-grain forbidden command stays forbidden, and the narrow-grain auto
+``-f`` is gone too.
+"""
+
+from __future__ import annotations
+
+import sys
+from pathlib import Path
+
+from .git import run_git
+from .paths import (
+    DIR_ARCHIVE,
+    DIR_TASKS,
+    DIR_WORKFLOW,
+    DIR_WORKSPACE,
+    FILE_JOURNAL_PREFIX,
+    get_developer,
+)
+
+
+# Paths under .trellis/ that must NEVER be auto-staged. Listed here so the
+# warning to the user can show concrete subpaths to ignore individually
+# instead of ignoring the whole `.trellis/` tree.
+TRELLIS_IGNORED_SUBPATHS = (
+    ".trellis/.backup-*",
+    ".trellis/worktrees/",
+    ".trellis/.template-hashes.json",
+    ".trellis/.runtime/",
+    ".trellis/.cache/",
+)
+
+
+def safe_trellis_paths_to_add(repo_root: Path) -> list[str]:
+    """Return the list of repo-relative paths the auto-commit should stage.
+
+    Only includes paths that exist on disk so callers don't pass non-existent
+    arguments to git. The caller is responsible for `git diff --cached`
+    checking afterwards.
+
+    Included:
+      - .trellis/workspace/<developer>/journal-*.md
+      - .trellis/workspace/<developer>/index.md
+      - .trellis/tasks/<task-dir>/   (every active task directory)
+      - .trellis/tasks/archive/      (whole archive subtree, if present)
+
+    Excluded (intentionally — these must not be staged):
+      - .trellis/.backup-*, .trellis/worktrees/,
+        .trellis/.template-hashes.json, .trellis/.runtime/, .trellis/.cache/
+    """
+    paths: list[str] = []
+
+    # Workspace journal files + index.md
+    developer = get_developer(repo_root)
+    if developer:
+        ws = repo_root / DIR_WORKFLOW / DIR_WORKSPACE / developer
+        if ws.is_dir():
+            for f in sorted(ws.glob(f"{FILE_JOURNAL_PREFIX}*.md")):
+                if f.is_file():
+                    paths.append(
+                        f"{DIR_WORKFLOW}/{DIR_WORKSPACE}/{developer}/{f.name}"
+                    )
+            index_md = ws / "index.md"
+            if index_md.is_file():
+                paths.append(
+                    f"{DIR_WORKFLOW}/{DIR_WORKSPACE}/{developer}/index.md"
+                )
+
+    # Active tasks: each direct child of tasks/ that is a directory and not
+    # the archive root. The archive subtree is added as a single path below.
+    tasks_dir = repo_root / DIR_WORKFLOW / DIR_TASKS
+    if tasks_dir.is_dir():
+        for child in sorted(tasks_dir.iterdir()):
+            if not child.is_dir():
+                continue
+            if child.name == DIR_ARCHIVE:
+                continue
+            paths.append(f"{DIR_WORKFLOW}/{DIR_TASKS}/{child.name}")
+
+        archive_dir = tasks_dir / DIR_ARCHIVE
+        if archive_dir.is_dir():
+            paths.append(f"{DIR_WORKFLOW}/{DIR_TASKS}/{DIR_ARCHIVE}")
+
+    return paths
+
+
+def safe_archive_paths_to_add(repo_root: Path) -> list[str]:
+    """Return paths to stage after `task.py archive`.
+
+    Limited to the archive subtree (where the freshly-moved task lives) plus
+    the source task directory's parent area to capture the deletion in the
+    same commit. We pass the whole `.trellis/tasks/` path so deletions of the
+    pre-move path are tracked, but only as a SPECIFIC subpath — not the whole
+    `.trellis/` tree.
+    """
+    paths: list[str] = []
+    tasks_dir = repo_root / DIR_WORKFLOW / DIR_TASKS
+    if tasks_dir.is_dir():
+        # The archive copy.
+        archive_dir = tasks_dir / DIR_ARCHIVE
+        if archive_dir.is_dir():
+            paths.append(f"{DIR_WORKFLOW}/{DIR_TASKS}/{DIR_ARCHIVE}")
+        # Active tasks (some may have been re-touched, e.g. parent's
+        # children list). This captures the source-path deletion too because
+        # `git add` on a directory records removals.
+        for child in sorted(tasks_dir.iterdir()):
+            if not child.is_dir():
+                continue
+            if child.name == DIR_ARCHIVE:
+                continue
+            paths.append(f"{DIR_WORKFLOW}/{DIR_TASKS}/{child.name}")
+    return paths
+
+
+def _stderr_indicates_ignored(stderr: str) -> bool:
+    """git add error indicates the path is excluded by .gitignore."""
+    if not stderr:
+        return False
+    lowered = stderr.lower()
+    return "ignored by" in lowered
+
+
+def safe_git_add(
+    paths: list[str], repo_root: Path
+) -> tuple[bool, bool, str]:
+    """Run `git add` on specific paths; never retry with -f.
+
+    Returns ``(success, used_force, stderr)``. The ``used_force`` field is
+    kept for signature compatibility with the 0.5.10 implementation but is
+    always ``False`` — we never auto-force.
+
+    Behavior:
+      - No paths passed → success, no force, empty stderr.
+      - Plain ``git add -- <paths>`` succeeds → return success.
+      - Plain fails (any reason — ignored or otherwise) → return failure with
+        the stderr. Callers should inspect the stderr (see
+        :func:`print_gitignore_warning`) and skip the auto-commit.
+    """
+    if not paths:
+        return True, False, ""
+
+    rc, _, err = run_git(["add", "--", *paths], cwd=repo_root)
+    if rc == 0:
+        return True, False, ""
+    return False, False, err
+
+
+def print_gitignore_warning(paths: list[str]) -> None:
+    """Explain to the user (and any AI reading the log) what to do.
+
+    CRITICAL: includes the negative example
+    ``Do NOT use `git add -f .trellis/``` — agents reading the warning are
+    known to invent that command, which fans out to ignored caches/backups.
+    """
+    print(
+        "[WARN] git add failed because .trellis/ paths are ignored by your .gitignore.",
+        file=sys.stderr,
+    )
+    print(
+        "[WARN] Skipping auto-commit. The journal/task files were still written to disk;",
+        file=sys.stderr,
+    )
+    print(
+        "[WARN] git was not touched.",
+        file=sys.stderr,
+    )
+    print("[WARN]", file=sys.stderr)
+    print(
+        "[WARN] Trellis manages these specific paths and they should be tracked:",
+        file=sys.stderr,
+    )
+    if paths:
+        for p in paths:
+            print(f"[WARN]   {p}", file=sys.stderr)
+    else:
+        print(
+            "[WARN]   .trellis/workspace/<developer>/{journal-*.md,index.md}",
+            file=sys.stderr,
+        )
+        print(
+            "[WARN]   .trellis/tasks/<task-dir>/",
+            file=sys.stderr,
+        )
+        print(
+            "[WARN]   .trellis/tasks/archive/",
+            file=sys.stderr,
+        )
+    print("[WARN]", file=sys.stderr)
+    print(
+        "[WARN] Recommended: change your .gitignore from `.trellis/` to specific",
+        file=sys.stderr,
+    )
+    print(
+        "[WARN] subpaths that should remain ignored, e.g.:",
+        file=sys.stderr,
+    )
+    for sub in TRELLIS_IGNORED_SUBPATHS:
+        print(f"[WARN]   {sub}", file=sys.stderr)
+    print("[WARN]", file=sys.stderr)
+    print(
+        "[WARN] Or, if you intentionally keep .trellis/ local-only, set in",
+        file=sys.stderr,
+    )
+    print(
+        "[WARN] .trellis/config.yaml:",
+        file=sys.stderr,
+    )
+    print(
+        "[WARN]   session_auto_commit: false",
+        file=sys.stderr,
+    )
+    print(
+        "[WARN] so the scripts skip git entirely and you can review / commit",
+        file=sys.stderr,
+    )
+    print(
+        "[WARN] manually with `git status` / `git add` / `git commit`.",
+        file=sys.stderr,
+    )
+    print("[WARN]", file=sys.stderr)
+    print(
+        "[WARN] Do NOT use `git add -f .trellis/` — it pulls in backups, worktrees,",
+        file=sys.stderr,
+    )
+    print(
+        "[WARN] and runtime caches that should never be committed.",
+        file=sys.stderr,
+    )

package/dist/templates/trellis/scripts/common/session_context.py

@@ -14,8 +14,12 @@ Provides:
 from __future__ import annotations
 
 import json
+import os
+import re
+import subprocess
 from pathlib import Path
 
+from .active_task import resolve_context_key
 from .config import get_git_packages
 from .git import run_git
 from .packages_context import get_packages_section
@@ -40,6 +44,14 @@ from .paths import (
 # Helpers
 # =============================================================================
 
+_PACKAGE_NAME = "@mindfoldhq/trellis"
+_UPDATE_CHECK_TIMEOUT_SECONDS = 1.0
+_VERSION_RE = re.compile(
+    r"^\s*(\d+)(?:\.(\d+))?(?:\.(\d+))?(?:-([0-9A-Za-z.-]+))?\s*$"
+)
+_VERSION_TOKEN_RE = re.compile(r"\b\d+(?:\.\d+){1,2}(?:-[0-9A-Za-z.-]+)?\b")
+
+
 def _collect_package_git_info(repo_root: Path) -> list[dict]:
     """Collect git status and recent commits for packages with independent git repos.
 
@@ -109,6 +121,158 @@ def _append_package_git_context(lines: list[str], package_git_info: list[dict])
         lines.append("")
 
 
+def _read_project_version(repo_root: Path) -> str | None:
+    try:
+        version = (repo_root / DIR_WORKFLOW / ".version").read_text(
+            encoding="utf-8"
+        ).strip()
+    except OSError:
+        return None
+    return version or None
+
+
+def _fetch_trellis_version_output() -> str | None:
+    try:
+        result = subprocess.run(
+            ["trellis", "--version"],
+            capture_output=True,
+            text=True,
+            encoding="utf-8",
+            errors="replace",
+            timeout=_UPDATE_CHECK_TIMEOUT_SECONDS,
+        )
+    except (OSError, subprocess.SubprocessError, TimeoutError):
+        return None
+
+    if result.returncode != 0:
+        return None
+    output = f"{result.stdout}\n{result.stderr}".strip()
+    return output or None
+
+
+def _extract_available_update_version(output: str) -> str | None:
+    update_match = re.search(
+        r"Trellis update available:\s*"
+        r"(?P<current>\S+)\s*(?:→|->)\s*(?P<latest>\S+)",
+        output,
+    )
+    if update_match:
+        return update_match.group("latest").strip()
+    candidates = _VERSION_TOKEN_RE.findall(output)
+    return candidates[-1] if candidates else None
+
+
+def _resolve_available_update_version() -> str | None:
+    output = _fetch_trellis_version_output()
+    if not output:
+        return None
+    return _extract_available_update_version(output)
+
+
+def _parse_version(version: str) -> tuple[tuple[int, int, int], tuple[str, ...] | None] | None:
+    match = _VERSION_RE.match(version)
+    if not match:
+        return None
+    major, minor, patch, prerelease = match.groups()
+    numbers = (int(major), int(minor or "0"), int(patch or "0"))
+    prerelease_parts = tuple(prerelease.split(".")) if prerelease else None
+    return numbers, prerelease_parts
+
+
+def _compare_prerelease(
+    left: tuple[str, ...] | None,
+    right: tuple[str, ...] | None,
+) -> int:
+    if left is None and right is None:
+        return 0
+    if left is None:
+        return 1
+    if right is None:
+        return -1
+
+    for left_part, right_part in zip(left, right):
+        if left_part == right_part:
+            continue
+        left_numeric = left_part.isdigit()
+        right_numeric = right_part.isdigit()
+        if left_numeric and right_numeric:
+            left_int = int(left_part)
+            right_int = int(right_part)
+            return (left_int > right_int) - (left_int < right_int)
+        if left_numeric:
+            return -1
+        if right_numeric:
+            return 1
+        return (left_part > right_part) - (left_part < right_part)
+
+    return (len(left) > len(right)) - (len(left) < len(right))
+
+
+def _compare_versions(left: str, right: str) -> int | None:
+    parsed_left = _parse_version(left)
+    parsed_right = _parse_version(right)
+    if parsed_left is None or parsed_right is None:
+        return None
+
+    left_numbers, left_prerelease = parsed_left
+    right_numbers, right_prerelease = parsed_right
+    if left_numbers != right_numbers:
+        return (left_numbers > right_numbers) - (left_numbers < right_numbers)
+    return _compare_prerelease(left_prerelease, right_prerelease)
+
+
+def _update_marker_path(repo_root: Path) -> Path:
+    context_key = resolve_context_key()
+    if not context_key:
+        terminal_key = os.environ.get("TERM_SESSION_ID", "").strip()
+        context_key = terminal_key or f"ppid-{os.getppid()}"
+    safe_key = re.sub(r"[^A-Za-z0-9._-]+", "_", context_key).strip("._-")
+    if not safe_key:
+        safe_key = "session"
+    return (
+        repo_root
+        / DIR_WORKFLOW
+        / ".runtime"
+        / f"update-check-{safe_key[:160]}.marker"
+    )
+
+
+def _mark_update_check_attempted(repo_root: Path) -> bool:
+    marker_path = _update_marker_path(repo_root)
+    if marker_path.exists():
+        return False
+    try:
+        marker_path.parent.mkdir(parents=True, exist_ok=True)
+        marker_path.write_text("checked\n", encoding="utf-8")
+    except OSError:
+        pass
+    return True
+
+
+def _get_update_hint(repo_root: Path) -> str | None:
+    marker_path = _update_marker_path(repo_root)
+    if marker_path.exists():
+        return None
+
+    current_version = _read_project_version(repo_root)
+    if not current_version:
+        return None
+
+    latest_version = _resolve_available_update_version()
+    if not latest_version:
+        return None
+
+    _mark_update_check_attempted(repo_root)
+    comparison = _compare_versions(current_version, latest_version)
+    if comparison is None or comparison >= 0:
+        return None
+
+    return (
+        f"Trellis update available: {current_version} -> {latest_version}, "
+        f"run npm install -g {_PACKAGE_NAME}@latest"
+    )
+
+
 # =============================================================================
 # JSON Output
 # =============================================================================
@@ -571,4 +735,10 @@ def output_text(repo_root: Path | None = None) -> None:
     Args:
         repo_root: Repository root path. Defaults to auto-detected.
     """
+    if repo_root is None:
+        repo_root = get_repo_root()
+    update_hint = _get_update_hint(repo_root)
+    if update_hint:
+        print(update_hint)
+        print("")
     print(get_context_text(repo_root))

package/dist/templates/trellis/scripts/common/task_store.py

@@ -24,6 +24,7 @@ from pathlib import Path
 
 from .config import (
     get_packages,
+    get_session_auto_commit,
     is_monorepo,
     resolve_package,
     validate_package,
@@ -41,6 +42,11 @@ from .paths import (
     get_repo_root,
     get_tasks_dir,
 )
+from .safe_commit import (
+    print_gitignore_warning,
+    safe_archive_paths_to_add,
+    safe_git_add,
+)
 from .task_utils import (
     archive_task_complete,
     find_task_by_name,
@@ -383,13 +389,43 @@ def cmd_archive(args: argparse.Namespace) -> int:
 
 
 def _auto_commit_archive(task_name: str, repo_root: Path) -> None:
-    """Stage .trellis/tasks/ changes and commit after archive."""
-    tasks_rel = f"{DIR_WORKFLOW}/{DIR_TASKS}"
-    run_git(["add", "-A", tasks_rel], cwd=repo_root)
+    """Stage Trellis-owned task paths and commit after archive.
+
+    Only stages specific subpaths (the archive subtree and active task dirs),
+    never the whole ``.trellis/`` tree. If ``.gitignore`` blocks the paths,
+    we warn + skip — we do NOT retry with ``git add -f``. The warning
+    explicitly forbids ``git add -f .trellis/`` (which would fan out to
+    caches/backups) and points users at ``session_auto_commit: false``.
+
+    Honors ``session_auto_commit`` in ``.trellis/config.yaml``: when set to
+    ``false``, this function returns immediately without touching git
+    (the archive directory move on disk is unaffected).
+    """
+    if not get_session_auto_commit(repo_root):
+        print(
+            "[OK] session_auto_commit: false — skipping git stage/commit.",
+            file=sys.stderr,
+        )
+        return
+
+    paths = safe_archive_paths_to_add(repo_root)
+    if not paths:
+        print("[OK] No task changes to commit.", file=sys.stderr)
+        return
+
+    success, _, err = safe_git_add(paths, repo_root)
+    if not success:
+        if err and "ignored by" in err.lower():
+            print_gitignore_warning(paths)
+        else:
+            print(
+                f"[WARN] git add failed: {err.strip() if err else 'unknown error'}",
+                file=sys.stderr,
+            )
+        return
 
-    # Check if there are staged changes
     rc, _, _ = run_git(
-        ["diff", "--cached", "--quiet", "--", tasks_rel], cwd=repo_root
+        ["diff", "--cached", "--quiet", "--", *paths], cwd=repo_root
     )
     if rc == 0:
         print("[OK] No task changes to commit.", file=sys.stderr)

package/dist/utils/uninstall-scrubbers.d.ts

@@ -38,6 +38,7 @@ export declare function scrubOpencodePackageJson(content: string): ScrubResult;
  * Scrub `.pi/settings.json`:
  * - drop `enableSkillCommands` (trellis-flagged)
  * - remove trellis entries from `extensions`/`skills`/`prompts` arrays
+ * - remove trellis-managed `packages["npm:pi-subagents"]` isolation override
  * - drop arrays that become empty
  */
 export declare function scrubPiSettings(content: string): ScrubResult;

package/dist/utils/uninstall-scrubbers.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"uninstall-scrubbers.d.ts","sourceRoot":"","sources":["../../src/utils/uninstall-scrubbers.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,MAAM,WAAW,WAAW;IAC1B,OAAO,EAAE,MAAM,CAAC;IAChB,UAAU,EAAE,OAAO,CAAC;CACrB;AAmDD;;;;;;;;;;GAUG;AACH,wBAAgB,cAAc,CAC5B,OAAO,EAAE,MAAM,EACf,YAAY,EAAE,SAAS,MAAM,EAAE,EAC/B,IAAI,EAAE,QAAQ,GAAG,MAAM,GACtB,WAAW,CAgGb;AAED;;;;;GAKG;AACH,wBAAgB,wBAAwB,CAAC,OAAO,EAAE,MAAM,GAAG,WAAW,CA+BrE;AAgBD;;;;;GAKG;AACH,wBAAgB,eAAe,CAAC,OAAO,EAAE,MAAM,GAAG,WAAW,CAuC5D;AAED;;;;;;;;;;;;;;;;;;;GAmBG;AACH,wBAAgB,oBAAoB,CAAC,OAAO,EAAE,MAAM,GAAG,WAAW,CAoDjE"}
+{"version":3,"file":"uninstall-scrubbers.d.ts","sourceRoot":"","sources":["../../src/utils/uninstall-scrubbers.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,MAAM,WAAW,WAAW;IAC1B,OAAO,EAAE,MAAM,CAAC;IAChB,UAAU,EAAE,OAAO,CAAC;CACrB;AAmDD;;;;;;;;;;GAUG;AACH,wBAAgB,cAAc,CAC5B,OAAO,EAAE,MAAM,EACf,YAAY,EAAE,SAAS,MAAM,EAAE,EAC/B,IAAI,EAAE,QAAQ,GAAG,MAAM,GACtB,WAAW,CAgGb;AAED;;;;;GAKG;AACH,wBAAgB,wBAAwB,CAAC,OAAO,EAAE,MAAM,GAAG,WAAW,CA+BrE;AAiBD;;;;;;GAMG;AACH,wBAAgB,eAAe,CAAC,OAAO,EAAE,MAAM,GAAG,WAAW,CA4D5D;AAED;;;;;;;;;;;;;;;;;;;GAmBG;AACH,wBAAgB,oBAAoB,CAAC,OAAO,EAAE,MAAM,GAAG,WAAW,CAoDjE"}

package/dist/utils/uninstall-scrubbers.js

@@ -201,6 +201,7 @@ export function scrubOpencodePackageJson(content) {
 const PI_TRELLIS_EXTENSION = "./extensions/trellis/index.ts";
 const PI_TRELLIS_SKILLS = "./skills";
 const PI_TRELLIS_PROMPTS = "./prompts";
+const PI_SUBAGENTS_PACKAGE = "npm:pi-subagents";
 function isTrellisPiEntry(value, target) {
     return typeof value === "string" && value === target;
 }
@@ -208,6 +209,7 @@ function isTrellisPiEntry(value, target) {
  * Scrub `.pi/settings.json`:
  * - drop `enableSkillCommands` (trellis-flagged)
  * - remove trellis entries from `extensions`/`skills`/`prompts` arrays
+ * - remove trellis-managed `packages["npm:pi-subagents"]` isolation override
  * - drop arrays that become empty
  */
 export function scrubPiSettings(content) {
@@ -243,6 +245,25 @@ export function scrubPiSettings(content) {
             root[key] = filtered;
         }
     }
+    const packagesValue = root.packages;
+    if (Array.isArray(packagesValue)) {
+        const filtered = packagesValue.filter((entry) => {
+            if (entry !== null &&
+                typeof entry === "object" &&
+                !Array.isArray(entry)) {
+                const obj = entry;
+                return obj.source !== PI_SUBAGENTS_PACKAGE;
+            }
+            // String entries — keep unless they exactly match the package name
+            return entry !== PI_SUBAGENTS_PACKAGE;
+        });
+        if (filtered.length === 0) {
+            delete root.packages;
+        }
+        else {
+            root.packages = filtered;
+        }
+    }
     const fullyEmpty = Object.keys(root).length === 0;
     return {
         content: JSON.stringify(root, null, 2) + "\n",

package/dist/utils/uninstall-scrubbers.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mindfoldhq/trellis",
-  "version": "0.5.9",
+  "version": "0.5.11",
   "description": "AI capabilities grow like ivy — Trellis provides the structure to guide them along a disciplined path",
   "type": "module",
   "main": "./dist/index.js",