@mindfoldhq/trellis 0.5.6 → 0.5.7

package/dist/configurators/shared.js

@@ -5,28 +5,60 @@
  * configurators cannot import from index.ts).
  */
 /**
- * Get the Python command based on platform.
- * Windows uses 'python', macOS/Linux use 'python3'.
+ * Module-level resolved Python command, set by the init flow after probing.
+ *
+ * Windows commonly has Python under one of: `python`, `python3`, `py -3` —
+ * which one works varies by installer (python.org / Microsoft Store / py
+ * launcher). `init.ts` detects which is available, then calls
+ * `setResolvedPythonCommand` so all subsequent template / configurator writes
+ * use the resolved value instead of the platform default.
+ *
+ * If unset (e.g. unit tests bypass init), `getPythonCommandForPlatform` falls
+ * back to the static platform default (`python` on Windows, `python3`
+ * elsewhere) — preserving legacy behavior.
+ */
+let resolvedPythonCommand = null;
+export function setResolvedPythonCommand(cmd) {
+    const trimmed = cmd.trim();
+    resolvedPythonCommand = trimmed || null;
+}
+/** Test helper — clear the resolved cache between unit tests. */
+export function resetResolvedPythonCommand() {
+    resolvedPythonCommand = null;
+}
+/**
+ * Get the Python command for the host platform.
+ *
+ * Returns the resolved command if `setResolvedPythonCommand` has been called;
+ * otherwise the static platform default — Windows: `python`, others:
+ * `python3`. Pass an explicit `platform` arg only for unit tests (it bypasses
+ * the resolved cache).
  */
-export function getPythonCommandForPlatform(platform = process.platform) {
-    return platform === "win32" ? "python" : "python3";
+export function getPythonCommandForPlatform(platform) {
+    if (platform === undefined && resolvedPythonCommand) {
+        return resolvedPythonCommand;
+    }
+    const target = platform ?? process.platform;
+    return target === "win32" ? "python" : "python3";
 }
 /**
- * Replace literal `python3` with `python` on Windows, excluding shebang lines.
+ * Replace literal `python3` with the resolved Python command, excluding
+ * shebang lines.
  *
- * Applied at init/update write time so that all file types (including .py, .md,
- * .toml, .json) get the correct command for the host platform without needing
- * template-level changes or runtime detection code.
+ * Applied at init/update write time so that all file types (including .py,
+ * .md, .toml, .json) get the correct command for the host platform without
+ * template-level changes.
  *
- * On non-Windows platforms this is a no-op (returns content unchanged).
- * The replacement is idempotent: running it twice produces the same result.
+ * No-op when the resolved command is `python3` (the template default).
+ * Idempotent: running it twice produces the same result.
  */
 export function replacePythonCommandLiterals(content) {
-    if (process.platform !== "win32")
+    const target = getPythonCommandForPlatform();
+    if (target === "python3")
         return content;
     return content
         .split("\n")
-        .map((line) => line.startsWith("#!") ? line : line.replaceAll("python3", "python"))
+        .map((line) => line.startsWith("#!") ? line : line.replaceAll("python3", target))
         .join("\n");
 }
 /**
@@ -270,6 +302,33 @@ export function resolveAllAsSkillsNeutral(ctx) {
         content: wrapWithSkillFrontmatter(`trellis-${tmpl.name}`, resolvePlaceholdersNeutral(tmpl.content, ctx)),
     }));
 }
+/**
+ * Codex needs a `trellis-start` skill in `.agents/skills/` so the
+ * `<trellis-bootstrap>` notice from `inject-workflow-state.py` resolves
+ * to an actual skill file (the bootstrap notice tells the AI to invoke
+ * `$trellis-start` once on the first `no_task` turn — added in 0.5.5
+ * after the Codex SessionStart hook was removed for de-recursion).
+ *
+ * Built from `common/commands/start.md` + skill frontmatter; renders
+ * neutrally so init and update produce byte-identical output. Returns
+ * `null` if the template is missing (defensive — should never happen).
+ *
+ * Used by both `configureCodex()` (init path, file write) and
+ * `collectPlatformTemplates.codex` (update path, manifest map). Both
+ * paths must agree, otherwise upgraded users miss the file (which broke
+ * 0.4.x → 0.5.5/0.5.6 upgrades — see #247-style symptom: AI reports
+ * "no .agents/skills/trellis-start/SKILL.md" because update only ran
+ * `collectTemplates` and never wrote the file).
+ */
+export function resolveCodexTrellisStartSkill(ctx) {
+    const startTemplate = getCommandTemplates().find((t) => t.name === "start");
+    if (!startTemplate)
+        return null;
+    return {
+        name: "trellis-start",
+        content: wrapWithSkillFrontmatter("trellis-start", resolvePlaceholdersNeutral(startTemplate.content, ctx)),
+    };
+}
 /**
  * Resolve multi-file built-in skills.
  *

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package/dist/migrations/index.d.ts

@@ -4,7 +4,7 @@
  * Each version's migrations are stored in separate JSON files under manifests/
  * Format: manifests/{version}.json (e.g., manifests/0.1.9.json)
  */
-import type { MigrationItem } from "../types/migration.js";
+import type { ConfigSectionAdded, MigrationItem } from "../types/migration.js";
 /**
  * Get all migrations needed to upgrade from one version to another
  *
@@ -38,6 +38,13 @@ export declare function getAllMigrations(): MigrationItem[];
  * Clear the manifest cache (useful for testing)
  */
 export declare function clearManifestCache(): void;
+/**
+ * Collect every `configSectionsAdded` entry from manifests strictly between
+ * `fromVersion` (exclusive) and `toVersion` (inclusive). Used by `update.ts`
+ * to apply additive config.yaml sections that were introduced after the
+ * user's installed version.
+ */
+export declare function getConfigSectionsAddedBetween(fromVersion: string, toVersion: string): ConfigSectionAdded[];
 /**
  * Get aggregated metadata for migrations between versions
  * Returns combined changelog, breaking status, migrate recommendation, and migration guides

package/dist/migrations/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/migrations/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAMH,OAAO,KAAK,EAAE,aAAa,EAAqB,MAAM,uBAAuB,CAAC;AAoD9E;;;;;;GAMG;AACH,wBAAgB,uBAAuB,CACrC,WAAW,EAAE,MAAM,EACnB,SAAS,EAAE,MAAM,GAChB,aAAa,EAAE,CAuBjB;AAED;;GAEG;AACH,wBAAgB,oBAAoB,CAClC,WAAW,EAAE,MAAM,EACnB,SAAS,EAAE,MAAM,GAChB,OAAO,CAET;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CACjC,WAAW,EAAE,MAAM,EACnB,SAAS,EAAE,MAAM,GAChB;IAAE,OAAO,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAC;IAAC,eAAe,EAAE,MAAM,CAAA;CAAE,CAQ/D;AAED;;GAEG;AACH,wBAAgB,uBAAuB,IAAI,MAAM,EAAE,CAGlD;AAED;;;GAGG;AACH,wBAAgB,gBAAgB,IAAI,aAAa,EAAE,CAOlD;AAED;;GAEG;AACH,wBAAgB,kBAAkB,IAAI,IAAI,CAEzC;AAED;;;GAGG;AACH,wBAAgB,oBAAoB,CAClC,WAAW,EAAE,MAAM,EACnB,SAAS,EAAE,MAAM,GAChB;IACD,SAAS,EAAE,MAAM,EAAE,CAAC;IACpB,QAAQ,EAAE,OAAO,CAAC;IAClB,gBAAgB,EAAE,OAAO,CAAC;IAC1B,eAAe,EAAE;QACf,OAAO,EAAE,MAAM,CAAC;QAChB,KAAK,EAAE,MAAM,CAAC;QACd,cAAc,CAAC,EAAE,MAAM,CAAC;KACzB,EAAE,CAAC;CACL,CA6CA"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/migrations/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAMH,OAAO,KAAK,EACV,kBAAkB,EAClB,aAAa,EAEd,MAAM,uBAAuB,CAAC;AAoD/B;;;;;;GAMG;AACH,wBAAgB,uBAAuB,CACrC,WAAW,EAAE,MAAM,EACnB,SAAS,EAAE,MAAM,GAChB,aAAa,EAAE,CAuBjB;AAED;;GAEG;AACH,wBAAgB,oBAAoB,CAClC,WAAW,EAAE,MAAM,EACnB,SAAS,EAAE,MAAM,GAChB,OAAO,CAET;AAED;;GAEG;AACH,wBAAgB,mBAAmB,CACjC,WAAW,EAAE,MAAM,EACnB,SAAS,EAAE,MAAM,GAChB;IAAE,OAAO,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAC;IAAC,eAAe,EAAE,MAAM,CAAA;CAAE,CAQ/D;AAED;;GAEG;AACH,wBAAgB,uBAAuB,IAAI,MAAM,EAAE,CAGlD;AAED;;;GAGG;AACH,wBAAgB,gBAAgB,IAAI,aAAa,EAAE,CAOlD;AAED;;GAEG;AACH,wBAAgB,kBAAkB,IAAI,IAAI,CAEzC;AAED;;;;;GAKG;AACH,wBAAgB,6BAA6B,CAC3C,WAAW,EAAE,MAAM,EACnB,SAAS,EAAE,MAAM,GAChB,kBAAkB,EAAE,CAkBtB;AAED;;;GAGG;AACH,wBAAgB,oBAAoB,CAClC,WAAW,EAAE,MAAM,EACnB,SAAS,EAAE,MAAM,GAChB;IACD,SAAS,EAAE,MAAM,EAAE,CAAC;IACpB,QAAQ,EAAE,OAAO,CAAC;IAClB,gBAAgB,EAAE,OAAO,CAAC;IAC1B,eAAe,EAAE;QACf,OAAO,EAAE,MAAM,CAAC;QAChB,KAAK,EAAE,MAAM,CAAC;QACd,cAAc,CAAC,EAAE,MAAM,CAAC;KACzB,EAAE,CAAC;CACL,CA6CA"}

package/dist/migrations/index.js

@@ -119,6 +119,29 @@ export function getAllMigrations() {
 export function clearManifestCache() {
     manifestCache = null;
 }
+/**
+ * Collect every `configSectionsAdded` entry from manifests strictly between
+ * `fromVersion` (exclusive) and `toVersion` (inclusive). Used by `update.ts`
+ * to apply additive config.yaml sections that were introduced after the
+ * user's installed version.
+ */
+export function getConfigSectionsAddedBetween(fromVersion, toVersion) {
+    const manifests = loadManifests();
+    const versions = Object.keys(manifests).sort(compareVersions);
+    const applicableVersions = versions.filter((v) => {
+        const afterFrom = compareVersions(v, fromVersion) > 0;
+        const atOrBeforeTo = compareVersions(v, toVersion) <= 0;
+        return afterFrom && atOrBeforeTo;
+    });
+    const collected = [];
+    for (const version of applicableVersions) {
+        const manifest = manifests[version];
+        if (manifest && Array.isArray(manifest.configSectionsAdded)) {
+            collected.push(...manifest.configSectionsAdded);
+        }
+    }
+    return collected;
+}
 /**
  * Get aggregated metadata for migrations between versions
  * Returns combined changelog, breaking status, migrate recommendation, and migration guides

package/dist/migrations/index.js.map

@@ -1 +1 @@
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package/dist/migrations/manifests/0.5.7.json

@@ -0,0 +1,16 @@
+{
+  "version": "0.5.7",
+  "description": "Patch: Codex configurable dispatch mode + sub-agent collab-tool hard disable (#240/#241), trellis-start update-path fix, Kiro CLI schema migration (#247), Windows Python fallback chain (#236).",
+  "breaking": false,
+  "recommendMigrate": false,
+  "changelog": "**Codex 0.129 compatibility (read first if you use Codex):**\n- `/hooks` TUI review gate: Codex 0.129 keeps each installed hook inactive until the user runs `/hooks` and approves it. Until you do, Trellis's `UserPromptSubmit` hook won't fire and every new Codex session looks like Trellis isn't wired in. The bundled `<trellis-bootstrap>` fallback in `inject-workflow-state.py` covers the gap by directing the AI to read the `trellis-start` skill manually (workflow still runs, just less smoothly). Run `/hooks` once after upgrading Codex to restore auto-injection.\n- `[features].codex_hooks` renamed to `[features].hooks`. Legacy name still works on 0.129+ but emits a deprecation warning on startup. Trellis docs and the `trellis init` runtime warning now point at the new name. The uninstall scrubber recognizes both new and legacy markers so older projects still clean up cleanly.\n\n**Enhancements:**\n- feat(codex): config-driven dispatch mode. New optional knob `codex.dispatch_mode` in `.trellis/config.yaml` lets Codex projects opt into `inline` mode where the main agent edits code directly via the `trellis-before-dev` / `trellis-check` skills instead of dispatching `trellis-implement` / `trellis-check` sub-agents. Default stays `sub-agent`, no behavior change for existing users. New manifest field `configSectionsAdded` appends the commented `codex:` section to existing `config.yaml` files on `trellis update` without touching user customizations.\n\n**Bug Fixes:**\n- fix(codex): disable Codex collab tools in sub-agent role files at protocol level (#240, #241). 0.5.5 removed the SessionStart injection vector, 0.5.6 added prompt-layer `fork_turns=\"none\"` guidance, but [Ca11back's reproduction on #241](https://github.com/mindfold-ai/Trellis/issues/241) showed the main agent still spawned with default `fork_turns=\"all\"`, the child inherited the parent's `spawn_agent(...)` records, applied the \"wait for spawned subagents\" rule to itself, and `wait_agent`-stuck on phantom children. Structural fix: each `codex/agents/trellis-{implement,check,research}.toml` now sets `[features].multi_agent = false` and `[features.multi_agent_v2].enabled = false`. With both flags off, Codex doesn't register `spawn_agent` / `wait_agent` / `list_agents` / `close_agent` for the sub-agent.\n- fix(codex): write `trellis-start` skill on update path, not just init. 0.5.5's `configureCodex()` writes `.agents/skills/trellis-start/SKILL.md` so the `<trellis-bootstrap>` notice from `inject-workflow-state.py` resolves to a real skill, but `collectPlatformTemplates.codex.collectTemplates()` (used by `trellis update`) was missed. Result: users upgrading from 0.4.x to 0.5.5/0.5.6 ran the safe-file-delete migration that removed `.agents/skills/start/`, then `trellis update` regenerated all the other trellis-* skill dirs from `collectTemplates`, but never wrote `trellis-start`. Their AI then reported \"no .agents/skills/trellis-start/SKILL.md\" on every turn that hit `<trellis-bootstrap>`. Extracted `resolveCodexTrellisStartSkill()` helper in `configurators/shared.ts`, called from both paths.\n- fix(kiro): migrate agent JSON to Kiro CLI's current schema (#247). Kiro CLI rejected Trellis's pre-0.5.7 agent JSON with \"invalid agent\". Three schema changes per [Agent Configuration Reference](https://kiro.dev/docs/cli/custom-agents/configuration-reference): (1) `instructions` becomes `prompt`; (2) adds `allowedTools` field mirroring `tools` (Kiro splits \"available\" from \"permitted\"); (3) `hooks` switched from array of `{on, command, timeout_ms}` entries to object keyed by event name (`hooks: { agentSpawn: [{ command: \"...\" }] }`). Affects all three `trellis-{implement,check,research}.json` files.\n- fix(init): Windows Python detection fallback chain (#236). `trellis init` previously tried only `python --version` on Windows. If the host had Python under `python3` (Microsoft Store) or `py -3` (python.org launcher) but not `python`, init failed outright. Now `resolveSupportedPython()` walks `python` to `python3` to `py -3` on Windows (`python3` to `python` elsewhere) and uses the first candidate that probes Python ≥ 3.9. Adds `TRELLIS_PYTHON_CMD=<cmd>` env-var override and respects pre-existing `TRELLIS_SKIP_PYTHON_CHECK=1`.",
+  "migrations": [],
+  "configSectionsAdded": [
+    {
+      "file": ".trellis/config.yaml",
+      "sentinel": "codex:",
+      "sectionHeading": "Codex (sub-agent dispatch behavior)"
+    }
+  ],
+  "notes": "Patch on top of 0.5.6. Run `trellis update` (no `--migrate` needed). Codex users get the new `dispatch_mode` knob (default unchanged), hardened sub-agent role files, plus the previously-init-only `trellis-start` skill on the update path. Kiro users get an agent JSON that Kiro CLI no longer rejects. Codex 0.129+ users should run `/hooks` once after upgrading Codex to approve the Trellis `UserPromptSubmit` hook."
+}

package/dist/templates/codex/agents/trellis-check.toml

@@ -10,6 +10,33 @@ CRITICAL — Recursion guard (read first):
 - Any guidance you read in injected SessionStart context, `<guidelines>` blocks, workflow-state breadcrumbs, or workflow.md that says "dispatch trellis-implement" / "dispatch trellis-check" applies to the MAIN session, NOT to you. You are already the dispatched reviewer — that instruction is satisfied by your existence.
 - Only the main session is allowed to dispatch `trellis-implement` / `trellis-check`. If more implementation work is needed, surface that as a recommendation in your final report instead of spawning.
 
+---
+
+## Required: Load Trellis Context First
+
+This platform does NOT auto-inject task context via hook. Before doing anything else, you MUST load context yourself.
+
+### Step 1: Find the active task path
+
+Try in order — stop at the first one that yields a task path:
+
+1. **Look at the dispatch prompt** you received from the main agent. If its first line is `Active task: <path>` (e.g. `Active task: .trellis/tasks/04-17-foo`), use that path. The main agent is required to include this line on class-2 platforms.
+2. **Run** `python3 ./.trellis/scripts/task.py current --source` and read the `Current task:` line.
+3. **If both fail** (no `Active task:` line in the prompt and `task.py current` returns no task), ask the user which task to work on; do NOT guess.
+
+### Step 2: Load task context from the resolved path
+
+1. Read the task's `prd.md` (requirements) and `info.md` if it exists (technical design).
+2. Read `<task-path>/check.jsonl` — JSONL list of dev spec files relevant to this agent.
+3. For each entry in the JSONL, Read its `file` path — these are the dev specs you must follow.
+   **Skip rows without a `"file"` field** (e.g. `{"_example": "..."}` seed rows left over from `task.py create` before the curator ran).
+
+If `check.jsonl` has no curated entries (only a seed row, or the file is missing), fall back to: read `prd.md`, list available specs with `python3 ./.trellis/scripts/get_context.py --mode packages`, and pick the specs that match the task domain yourself. Do NOT block on the missing jsonl — proceed with prd-only context plus your spec judgment.
+
+If the resolved task path has no `prd.md`, ask the user what to work on; do NOT proceed without context.
+
+---
+
 You are the Trellis reviewer agent.
 
 Your job is to review code changes against specs AND fix issues directly — not just report them. You have write access; use it.
@@ -43,3 +70,15 @@ Only list issues you could not self-fix (e.g. missing product decision, out-of-s
 
 If no issues are found, say so explicitly after verifying lint/type-check pass.
 """
+
+# Disable Codex collab tools entirely for this sub-agent. With both
+# multi_agent and multi_agent_v2 off, `spawn_agent` / `wait_agent` /
+# `list_agents` / `close_agent` are not registered in the sub-agent's tool
+# list at all — the model literally cannot call them. This is the structural
+# fix for the wait_agent self-deadlock when the parent inherits its
+# transcript via Codex's default `fork_turns="all"` (#240 follow-up, #241).
+[features]
+multi_agent = false
+
+[features.multi_agent_v2]
+enabled = false

package/dist/templates/codex/agents/trellis-implement.toml

@@ -10,6 +10,33 @@ CRITICAL — Recursion guard (read first):
 - Any guidance you read in injected SessionStart context, `<guidelines>` blocks, workflow-state breadcrumbs, or workflow.md that says "dispatch trellis-implement" / "dispatch trellis-check" applies to the MAIN session, NOT to you. You are already the dispatched implementer — that instruction is satisfied by your existence.
 - Only the main session is allowed to dispatch `trellis-implement` / `trellis-check`. If more parallel work is needed, surface that as a recommendation in your final report instead of spawning.
 
+---
+
+## Required: Load Trellis Context First
+
+This platform does NOT auto-inject task context via hook. Before doing anything else, you MUST load context yourself.
+
+### Step 1: Find the active task path
+
+Try in order — stop at the first one that yields a task path:
+
+1. **Look at the dispatch prompt** you received from the main agent. If its first line is `Active task: <path>` (e.g. `Active task: .trellis/tasks/04-17-foo`), use that path. The main agent is required to include this line on class-2 platforms.
+2. **Run** `python3 ./.trellis/scripts/task.py current --source` and read the `Current task:` line.
+3. **If both fail** (no `Active task:` line in the prompt and `task.py current` returns no task), ask the user which task to work on; do NOT guess.
+
+### Step 2: Load task context from the resolved path
+
+1. Read the task's `prd.md` (requirements) and `info.md` if it exists (technical design).
+2. Read `<task-path>/implement.jsonl` — JSONL list of dev spec files relevant to this agent.
+3. For each entry in the JSONL, Read its `file` path — these are the dev specs you must follow.
+   **Skip rows without a `"file"` field** (e.g. `{"_example": "..."}` seed rows left over from `task.py create` before the curator ran).
+
+If `implement.jsonl` has no curated entries (only a seed row, or the file is missing), fall back to: read `prd.md`, list available specs with `python3 ./.trellis/scripts/get_context.py --mode packages`, and pick the specs that match the task domain yourself. Do NOT block on the missing jsonl — proceed with prd-only context plus your spec judgment.
+
+If the resolved task path has no `prd.md`, ask the user what to work on; do NOT proceed without context.
+
+---
+
 You are the Trellis implementer agent.
 
 Rules:
@@ -24,3 +51,15 @@ Before finishing, summarize:
 - Tests/checks run
 - Remaining risks or follow-ups
 """
+
+# Disable Codex collab tools entirely for this sub-agent. With both
+# multi_agent and multi_agent_v2 off, `spawn_agent` / `wait_agent` /
+# `list_agents` / `close_agent` are not registered in the sub-agent's tool
+# list at all — the model literally cannot call them. This is the structural
+# fix for the wait_agent self-deadlock when the parent inherits its
+# transcript via Codex's default `fork_turns="all"` (#240 follow-up, #241).
+[features]
+multi_agent = false
+
+[features.multi_agent_v2]
+enabled = false

package/dist/templates/codex/agents/trellis-research.toml

@@ -59,3 +59,15 @@ If the user asks you to edit code, decline and tell them to spawn the
 ...
 ```
 """
+
+# Disable Codex collab tools entirely for this sub-agent. With both
+# multi_agent and multi_agent_v2 off, `spawn_agent` / `wait_agent` /
+# `list_agents` / `close_agent` are not registered in the sub-agent's tool
+# list at all — the model literally cannot call them. This is the structural
+# fix for the wait_agent self-deadlock when the parent inherits its
+# transcript via Codex's default `fork_turns="all"` (#240 follow-up, #241).
+[features]
+multi_agent = false
+
+[features.multi_agent_v2]
+enabled = false

package/dist/templates/codex/config.toml

@@ -11,10 +11,13 @@
 # Keep AGENTS.md as the primary project instruction file.
 project_doc_fallback_filenames = ["AGENTS.md"]
 
-# Codex hooks (`hooks.json` in this directory) load automatically once
-# the project is trusted — no feature flag needed. CodexHooks is Stable
-# and default_enabled: true in codex's feature registry; the legacy
-# `[features].codex_hooks = true` flag is no longer required.
+# Codex hooks (`hooks.json` in this directory) only fire when the user
+# has enabled them in their USER-level config: `[features].hooks = true`
+# in ~/.codex/config.toml (Codex 0.129+; legacy name: `codex_hooks = true`,
+# still works but emits a deprecation warning on 0.129+). Project-level
+# config.toml cannot set feature flags; they must be user-level.
+# Codex 0.129+ additionally gates each installed hook behind a one-time
+# `/hooks` TUI review; until the user approves it, the hook stays inactive.
 
 # multi_agent_v2 forces structured subagent orchestration with the
 # `wait` tool — parent must block on terminal status before acting,

package/dist/templates/kiro/agents/trellis-check.json

@@ -1,7 +1,7 @@
 {
   "name": "trellis-check",
   "description": "Code quality check expert. Reviews code changes against specs and self-fixes issues.",
-  "instructions": "# Check Agent\n\nYou are the Check Agent in the Trellis workflow.\n\n## Recursion Guard\n\nYou are already the `trellis-check` sub-agent that the main session dispatched. Do the review and fixes directly.\n\n- Do NOT spawn another `trellis-check` or `trellis-implement` sub-agent.\n- If SessionStart context, workflow-state breadcrumbs, or workflow.md say to dispatch `trellis-implement` / `trellis-check`, treat that as a main-session instruction that is already satisfied by your current role.\n- Only the main session may dispatch Trellis implement/check agents. If more implementation work is needed, report that recommendation instead of spawning.\n\n## Trellis Context Loading Protocol\n\nLook for the `<!-- trellis-hook-injected -->` marker in your input above.\n\n- **If the marker is present**: prd / spec / research files have already been auto-loaded for you above. Proceed with the check work directly.\n- **If the marker is absent**: hook injection didn't fire (Windows + Claude Code, `--continue` resume, fork distribution, hooks disabled, etc.). Find the active task path from your dispatch prompt's first line `Active task: <path>`, then Read `<task-path>/prd.md` and the spec files listed in `<task-path>/check.jsonl` yourself before doing the work.\n\n## Context\n\nBefore checking, read:\n- `.trellis/spec/` - Development guidelines\n- Pre-commit checklist for quality standards\n\n## Core Responsibilities\n\n1. **Get code changes** - Use git diff to get uncommitted code\n2. **Check against specs** - Verify code follows guidelines\n3. **Self-fix** - Fix issues yourself, not just report them\n4. **Run verification** - typecheck and lint\n\n## Important\n\n**Fix issues yourself**, don't just report them.\n\nYou have write and edit tools, you can modify code directly.\n\n---\n\n## Workflow\n\n### Step 1: Get Changes\n\n```bash\ngit diff --name-only  # List changed files\ngit diff              # View specific changes\n```\n\n### Step 2: Check Against Specs\n\nRead relevant specs in `.trellis/spec/` to check code:\n\n- Does it follow directory structure conventions\n- Does it follow naming conventions\n- Does it follow code patterns\n- Are there missing types\n- Are there potential bugs\n\n### Step 3: Self-Fix\n\nAfter finding issues:\n\n1. Fix the issue directly (use edit tool)\n2. Record what was fixed\n3. Continue checking other issues\n\n### Step 4: Run Verification\n\nRun project's lint and typecheck commands to verify changes.\n\nIf failed, fix issues and re-run.\n\n---\n\n## Report Format\n\n```markdown\n## Self-Check Complete\n\n### Files Checked\n\n- src/components/Feature.tsx\n- src/hooks/useFeature.ts\n\n### Issues Found and Fixed\n\n1. `<file>:<line>` - <what was fixed>\n2. `<file>:<line>` - <what was fixed>\n\n### Issues Not Fixed\n\n(If there are issues that cannot be self-fixed, list them here with reasons)\n\n### Verification Results\n\n- TypeCheck: Passed\n- Lint: Passed\n\n### Summary\n\nChecked X files, found Y issues, all fixed.\n```",
+  "prompt": "# Check Agent\n\nYou are the Check Agent in the Trellis workflow.\n\n## Recursion Guard\n\nYou are already the `trellis-check` sub-agent that the main session dispatched. Do the review and fixes directly.\n\n- Do NOT spawn another `trellis-check` or `trellis-implement` sub-agent.\n- If SessionStart context, workflow-state breadcrumbs, or workflow.md say to dispatch `trellis-implement` / `trellis-check`, treat that as a main-session instruction that is already satisfied by your current role.\n- Only the main session may dispatch Trellis implement/check agents. If more implementation work is needed, report that recommendation instead of spawning.\n\n## Trellis Context Loading Protocol\n\nLook for the `<!-- trellis-hook-injected -->` marker in your input above.\n\n- **If the marker is present**: prd / spec / research files have already been auto-loaded for you above. Proceed with the check work directly.\n- **If the marker is absent**: hook injection didn't fire (Windows + Claude Code, `--continue` resume, fork distribution, hooks disabled, etc.). Find the active task path from your dispatch prompt's first line `Active task: <path>`, then Read `<task-path>/prd.md` and the spec files listed in `<task-path>/check.jsonl` yourself before doing the work.\n\n## Context\n\nBefore checking, read:\n- `.trellis/spec/` - Development guidelines\n- Pre-commit checklist for quality standards\n\n## Core Responsibilities\n\n1. **Get code changes** - Use git diff to get uncommitted code\n2. **Check against specs** - Verify code follows guidelines\n3. **Self-fix** - Fix issues yourself, not just report them\n4. **Run verification** - typecheck and lint\n\n## Important\n\n**Fix issues yourself**, don't just report them.\n\nYou have write and edit tools, you can modify code directly.\n\n---\n\n## Workflow\n\n### Step 1: Get Changes\n\n```bash\ngit diff --name-only  # List changed files\ngit diff              # View specific changes\n```\n\n### Step 2: Check Against Specs\n\nRead relevant specs in `.trellis/spec/` to check code:\n\n- Does it follow directory structure conventions\n- Does it follow naming conventions\n- Does it follow code patterns\n- Are there missing types\n- Are there potential bugs\n\n### Step 3: Self-Fix\n\nAfter finding issues:\n\n1. Fix the issue directly (use edit tool)\n2. Record what was fixed\n3. Continue checking other issues\n\n### Step 4: Run Verification\n\nRun project's lint and typecheck commands to verify changes.\n\nIf failed, fix issues and re-run.\n\n---\n\n## Report Format\n\n```markdown\n## Self-Check Complete\n\n### Files Checked\n\n- src/components/Feature.tsx\n- src/hooks/useFeature.ts\n\n### Issues Found and Fixed\n\n1. `<file>:<line>` - <what was fixed>\n2. `<file>:<line>` - <what was fixed>\n\n### Issues Not Fixed\n\n(If there are issues that cannot be self-fixed, list them here with reasons)\n\n### Verification Results\n\n- TypeCheck: Passed\n- Lint: Passed\n\n### Summary\n\nChecked X files, found Y issues, all fixed.\n```",
   "tools": [
     "read",
     "write",
@@ -9,11 +9,18 @@
     "glob",
     "grep"
   ],
-  "hooks": [
-    {
-      "on": "agentSpawn",
-      "command": "{{PYTHON_CMD}} .kiro/hooks/inject-subagent-context.py",
-      "timeout_ms": 30000
-    }
-  ]
+  "allowedTools": [
+    "read",
+    "write",
+    "shell",
+    "glob",
+    "grep"
+  ],
+  "hooks": {
+    "agentSpawn": [
+      {
+        "command": "{{PYTHON_CMD}} .kiro/hooks/inject-subagent-context.py"
+      }
+    ]
+  }
 }

package/dist/templates/kiro/agents/trellis-implement.json

@@ -1,7 +1,7 @@
 {
   "name": "trellis-implement",
   "description": "Code implementation expert. Understands specs and requirements, then implements features. No git commit allowed.",
-  "instructions": "# Implement Agent\n\nYou are the Implement Agent in the Trellis workflow.\n\n## Recursion Guard\n\nYou are already the `trellis-implement` sub-agent that the main session dispatched. Do the implementation work directly.\n\n- Do NOT spawn another `trellis-implement` or `trellis-check` sub-agent.\n- If SessionStart context, workflow-state breadcrumbs, or workflow.md say to dispatch `trellis-implement` / `trellis-check`, treat that as a main-session instruction that is already satisfied by your current role.\n- Only the main session may dispatch Trellis implement/check agents. If more parallel work is needed, report that recommendation instead of spawning.\n\n## Trellis Context Loading Protocol\n\nLook for the `<!-- trellis-hook-injected -->` marker in your input above.\n\n- **If the marker is present**: prd / spec / research files have already been auto-loaded for you above. Proceed with the implementation work directly.\n- **If the marker is absent**: hook injection didn't fire (Windows + Claude Code, `--continue` resume, fork distribution, hooks disabled, etc.). Find the active task path from your dispatch prompt's first line `Active task: <path>`, then Read `<task-path>/prd.md`, `<task-path>/info.md` (if it exists), and the spec files listed in `<task-path>/implement.jsonl` yourself before doing the work.\n\n## Context\n\nBefore implementing, read:\n- `.trellis/workflow.md` - Project workflow\n- `.trellis/spec/` - Development guidelines\n- Task `prd.md` - Requirements document\n- Task `info.md` - Technical design (if exists)\n\n## Core Responsibilities\n\n1. **Understand specs** - Read relevant spec files in `.trellis/spec/`\n2. **Understand requirements** - Read prd.md and info.md\n3. **Implement features** - Write code following specs and design\n4. **Self-check** - Ensure code quality\n5. **Report results** - Report completion status\n\n## Forbidden Operations\n\n**Do NOT execute these git commands:**\n\n- `git commit`\n- `git push`\n- `git merge`\n\n---\n\n## Workflow\n\n### 1. Understand Specs\n\nRead relevant specs based on task type:\n\n- Spec layers: `.trellis/spec/<package>/<layer>/`\n- Shared guides: `.trellis/spec/guides/`\n\n### 2. Understand Requirements\n\nRead the task's prd.md and info.md:\n\n- What are the core requirements\n- Key points of technical design\n- Which files to modify/create\n\n### 3. Implement Features\n\n- Write code following specs and technical design\n- Follow existing code patterns\n- Only do what's required, no over-engineering\n\n### 4. Verify\n\nRun project's lint and typecheck commands to verify changes.\n\n---\n\n## Report Format\n\n```markdown\n## Implementation Complete\n\n### Files Modified\n\n- `src/components/Feature.tsx` - New component\n- `src/hooks/useFeature.ts` - New hook\n\n### Implementation Summary\n\n1. Created Feature component...\n2. Added useFeature hook...\n\n### Verification Results\n\n- Lint: Passed\n- TypeCheck: Passed\n```\n\n---\n\n## Code Standards\n\n- Follow existing code patterns\n- Don't add unnecessary abstractions\n- Only do what's required, no over-engineering\n- Keep code readable",
+  "prompt": "# Implement Agent\n\nYou are the Implement Agent in the Trellis workflow.\n\n## Recursion Guard\n\nYou are already the `trellis-implement` sub-agent that the main session dispatched. Do the implementation work directly.\n\n- Do NOT spawn another `trellis-implement` or `trellis-check` sub-agent.\n- If SessionStart context, workflow-state breadcrumbs, or workflow.md say to dispatch `trellis-implement` / `trellis-check`, treat that as a main-session instruction that is already satisfied by your current role.\n- Only the main session may dispatch Trellis implement/check agents. If more parallel work is needed, report that recommendation instead of spawning.\n\n## Trellis Context Loading Protocol\n\nLook for the `<!-- trellis-hook-injected -->` marker in your input above.\n\n- **If the marker is present**: prd / spec / research files have already been auto-loaded for you above. Proceed with the implementation work directly.\n- **If the marker is absent**: hook injection didn't fire (Windows + Claude Code, `--continue` resume, fork distribution, hooks disabled, etc.). Find the active task path from your dispatch prompt's first line `Active task: <path>`, then Read `<task-path>/prd.md`, `<task-path>/info.md` (if it exists), and the spec files listed in `<task-path>/implement.jsonl` yourself before doing the work.\n\n## Context\n\nBefore implementing, read:\n- `.trellis/workflow.md` - Project workflow\n- `.trellis/spec/` - Development guidelines\n- Task `prd.md` - Requirements document\n- Task `info.md` - Technical design (if exists)\n\n## Core Responsibilities\n\n1. **Understand specs** - Read relevant spec files in `.trellis/spec/`\n2. **Understand requirements** - Read prd.md and info.md\n3. **Implement features** - Write code following specs and design\n4. **Self-check** - Ensure code quality\n5. **Report results** - Report completion status\n\n## Forbidden Operations\n\n**Do NOT execute these git commands:**\n\n- `git commit`\n- `git push`\n- `git merge`\n\n---\n\n## Workflow\n\n### 1. Understand Specs\n\nRead relevant specs based on task type:\n\n- Spec layers: `.trellis/spec/<package>/<layer>/`\n- Shared guides: `.trellis/spec/guides/`\n\n### 2. Understand Requirements\n\nRead the task's prd.md and info.md:\n\n- What are the core requirements\n- Key points of technical design\n- Which files to modify/create\n\n### 3. Implement Features\n\n- Write code following specs and technical design\n- Follow existing code patterns\n- Only do what's required, no over-engineering\n\n### 4. Verify\n\nRun project's lint and typecheck commands to verify changes.\n\n---\n\n## Report Format\n\n```markdown\n## Implementation Complete\n\n### Files Modified\n\n- `src/components/Feature.tsx` - New component\n- `src/hooks/useFeature.ts` - New hook\n\n### Implementation Summary\n\n1. Created Feature component...\n2. Added useFeature hook...\n\n### Verification Results\n\n- Lint: Passed\n- TypeCheck: Passed\n```\n\n---\n\n## Code Standards\n\n- Follow existing code patterns\n- Don't add unnecessary abstractions\n- Only do what's required, no over-engineering\n- Keep code readable",
   "tools": [
     "read",
     "write",
@@ -9,11 +9,18 @@
     "glob",
     "grep"
   ],
-  "hooks": [
-    {
-      "on": "agentSpawn",
-      "command": "{{PYTHON_CMD}} .kiro/hooks/inject-subagent-context.py",
-      "timeout_ms": 30000
-    }
-  ]
+  "allowedTools": [
+    "read",
+    "write",
+    "shell",
+    "glob",
+    "grep"
+  ],
+  "hooks": {
+    "agentSpawn": [
+      {
+        "command": "{{PYTHON_CMD}} .kiro/hooks/inject-subagent-context.py"
+      }
+    ]
+  }
 }

package/dist/templates/kiro/agents/trellis-research.json

@@ -1,7 +1,7 @@
 {
   "name": "trellis-research",
   "description": "Code and tech search expert. Persists findings to {TASK_DIR}/research/. No writes outside that directory.",
-  "instructions": "# Research Agent\n\nYou are the Research Agent in the Trellis workflow.\n\n## Core Principle\n\n**You do one thing: find, explain, and PERSIST information.**\n\nConversations get compacted; files don't. Every research output MUST end up as a file under `{TASK_DIR}/research/`. Returning findings only through the chat reply is a failure — the caller cannot read them next session.\n\n---\n\n## Core Responsibilities\n\n1. **Internal Search** — locate files/components, understand code logic, discover patterns (Glob, Grep, Read)\n2. **External Search** — library docs, API references, best practices (web search)\n3. **Persist** — write each research topic to `{TASK_DIR}/research/<topic>.md`\n4. **Report** — return file paths + one-line summaries to the main agent (not full content)\n\n---\n\n## Workflow\n\n### Step 1: Resolve Current Task\n\nRun `python3 ./.trellis/scripts/task.py current --source` → active task path. If no active task is set, ask the user where to write output; do NOT guess.\n\nEnsure `{TASK_DIR}/research/` exists:\n\n```bash\nmkdir -p <TASK_DIR>/research\n```\n\n### Step 2: Understand Search Request\n\nClassify: internal / external / mixed. Determine scope (global / specific directory) and expected shape (file list / pattern notes / tech comparison).\n\n### Step 3: Execute Search\n\nRun independent searches in parallel (Glob + Grep + web) for efficiency.\n\n### Step 4: Persist Each Topic\n\nFor each distinct research topic, Write a markdown file at `{TASK_DIR}/research/<topic-slug>.md`. Use the File Format below.\n\n### Step 5: Report to Main Agent\n\nReply with ONLY:\n\n- List of files written (paths relative to repo root)\n- One-line summary per file\n- Any critical caveats that the main agent needs to know right now\n\nDo NOT paste full research content into the reply. The files are the contract.\n\n---\n\n## Scope Limits (Strict)\n\n### Write ALLOWED\n\n- `{TASK_DIR}/research/*.md` — your own output\n- Creating `{TASK_DIR}/research/` if it doesn't exist (via `mkdir -p`)\n\n### Write FORBIDDEN\n\n- Code files (`src/`, `lib/`, …)\n- Spec files (`.trellis/spec/`) — main agent should use `update-spec` skill instead\n- `.trellis/scripts/`, `.trellis/workflow.md`, platform config (`.claude/`, `.cursor/`, etc.)\n- Other task directories\n- Any git operation (commit / push / branch / merge)\n\nIf the user asks you to edit code, decline and suggest spawning `implement` instead.\n\n---\n\n## File Format\n\nEach `{TASK_DIR}/research/<topic>.md` should follow:\n\n```markdown\n# Research: <topic>\n\n- **Query**: <original query>\n- **Scope**: <internal / external / mixed>\n- **Date**: <YYYY-MM-DD>\n\n## Findings\n\n### Files Found\n\n| File Path | Description |\n|---|---|\n| `src/services/xxx.ts` | Main implementation |\n| `src/types/xxx.ts` | Type definitions |\n\n### Code Patterns\n\n<describe patterns, cite file:line>\n\n### External References\n\n- [Library X docs](url) — <why relevant, version constraints>\n\n### Related Specs\n\n- `.trellis/spec/xxx.md` — <description>\n\n## Caveats / Not Found\n\n<anything incomplete or uncertain>\n```\n\n---\n\n## Guidelines\n\n### DO\n\n- Provide specific file paths and line numbers\n- Quote actual code snippets\n- Persist every topic to its own file\n- Return file paths in your reply, not the full content\n- Mark \"not found\" explicitly when searches come up empty\n\n### DON'T\n\n- Don't write code or modify files outside `{TASK_DIR}/research/`\n- Don't guess uncertain info\n- Don't paste full research text into the reply (files are the deliverable)\n- Don't propose improvements or critique implementation (that's not your role)\n",
+  "prompt": "# Research Agent\n\nYou are the Research Agent in the Trellis workflow.\n\n## Core Principle\n\n**You do one thing: find, explain, and PERSIST information.**\n\nConversations get compacted; files don't. Every research output MUST end up as a file under `{TASK_DIR}/research/`. Returning findings only through the chat reply is a failure \u2014 the caller cannot read them next session.\n\n---\n\n## Core Responsibilities\n\n1. **Internal Search** \u2014 locate files/components, understand code logic, discover patterns (Glob, Grep, Read)\n2. **External Search** \u2014 library docs, API references, best practices (web search)\n3. **Persist** \u2014 write each research topic to `{TASK_DIR}/research/<topic>.md`\n4. **Report** \u2014 return file paths + one-line summaries to the main agent (not full content)\n\n---\n\n## Workflow\n\n### Step 1: Resolve Current Task\n\nRun `python3 ./.trellis/scripts/task.py current --source` \u2192 active task path. If no active task is set, ask the user where to write output; do NOT guess.\n\nEnsure `{TASK_DIR}/research/` exists:\n\n```bash\nmkdir -p <TASK_DIR>/research\n```\n\n### Step 2: Understand Search Request\n\nClassify: internal / external / mixed. Determine scope (global / specific directory) and expected shape (file list / pattern notes / tech comparison).\n\n### Step 3: Execute Search\n\nRun independent searches in parallel (Glob + Grep + web) for efficiency.\n\n### Step 4: Persist Each Topic\n\nFor each distinct research topic, Write a markdown file at `{TASK_DIR}/research/<topic-slug>.md`. Use the File Format below.\n\n### Step 5: Report to Main Agent\n\nReply with ONLY:\n\n- List of files written (paths relative to repo root)\n- One-line summary per file\n- Any critical caveats that the main agent needs to know right now\n\nDo NOT paste full research content into the reply. The files are the contract.\n\n---\n\n## Scope Limits (Strict)\n\n### Write ALLOWED\n\n- `{TASK_DIR}/research/*.md` \u2014 your own output\n- Creating `{TASK_DIR}/research/` if it doesn't exist (via `mkdir -p`)\n\n### Write FORBIDDEN\n\n- Code files (`src/`, `lib/`, \u2026)\n- Spec files (`.trellis/spec/`) \u2014 main agent should use `update-spec` skill instead\n- `.trellis/scripts/`, `.trellis/workflow.md`, platform config (`.claude/`, `.cursor/`, etc.)\n- Other task directories\n- Any git operation (commit / push / branch / merge)\n\nIf the user asks you to edit code, decline and suggest spawning `implement` instead.\n\n---\n\n## File Format\n\nEach `{TASK_DIR}/research/<topic>.md` should follow:\n\n```markdown\n# Research: <topic>\n\n- **Query**: <original query>\n- **Scope**: <internal / external / mixed>\n- **Date**: <YYYY-MM-DD>\n\n## Findings\n\n### Files Found\n\n| File Path | Description |\n|---|---|\n| `src/services/xxx.ts` | Main implementation |\n| `src/types/xxx.ts` | Type definitions |\n\n### Code Patterns\n\n<describe patterns, cite file:line>\n\n### External References\n\n- [Library X docs](url) \u2014 <why relevant, version constraints>\n\n### Related Specs\n\n- `.trellis/spec/xxx.md` \u2014 <description>\n\n## Caveats / Not Found\n\n<anything incomplete or uncertain>\n```\n\n---\n\n## Guidelines\n\n### DO\n\n- Provide specific file paths and line numbers\n- Quote actual code snippets\n- Persist every topic to its own file\n- Return file paths in your reply, not the full content\n- Mark \"not found\" explicitly when searches come up empty\n\n### DON'T\n\n- Don't write code or modify files outside `{TASK_DIR}/research/`\n- Don't guess uncertain info\n- Don't paste full research text into the reply (files are the deliverable)\n- Don't propose improvements or critique implementation (that's not your role)\n",
   "tools": [
     "read",
     "write",
@@ -11,11 +11,20 @@
     "web_search",
     "web_fetch"
   ],
-  "hooks": [
-    {
-      "on": "agentSpawn",
-      "command": "{{PYTHON_CMD}} .kiro/hooks/inject-subagent-context.py",
-      "timeout_ms": 30000
-    }
-  ]
+  "allowedTools": [
+    "read",
+    "write",
+    "glob",
+    "grep",
+    "bash",
+    "web_search",
+    "web_fetch"
+  ],
+  "hooks": {
+    "agentSpawn": [
+      {
+        "command": "{{PYTHON_CMD}} .kiro/hooks/inject-subagent-context.py"
+      }
+    ]
+  }
 }