@milo4jo/contextkit 0.1.0 → 0.3.0

package/dist/indexer/index.js

@@ -2,18 +2,73 @@
  * Main Indexer Module
  *
  * Orchestrates file discovery, chunking, embedding, and storage.
+ * Supports incremental indexing via content hashing.
  */
+import { createHash } from 'crypto';
 import { discoverFiles } from './discovery.js';
 import { chunkFiles } from './chunker.js';
 import { embedChunks } from './embeddings.js';
 /**
- * Index all sources
+ * Get all stored file hashes for a source
  */
-export async function indexSources(sources, baseDir, db, chunkOptions, onProgress) {
+function getStoredFiles(db, sourceId) {
+    const rows = db.prepare('SELECT file_path, content_hash FROM files WHERE source_id = ?').all(sourceId);
+    const map = new Map();
+    for (const row of rows) {
+        map.set(row.file_path, row.content_hash);
+    }
+    return map;
+}
+/**
+ * Determine which files need to be indexed
+ */
+function categorizeFiles(discovered, stored) {
+    const newFiles = [];
+    const changedFiles = [];
+    const unchangedFiles = [];
+    const currentPaths = new Set();
+    for (const file of discovered) {
+        currentPaths.add(file.relativePath);
+        const storedHash = stored.get(file.relativePath);
+        if (!storedHash) {
+            // New file
+            newFiles.push(file);
+        }
+        else if (storedHash !== file.contentHash) {
+            // Changed file
+            changedFiles.push(file);
+        }
+        else {
+            // Unchanged
+            unchangedFiles.push(file);
+        }
+    }
+    // Find removed files
+    const removedFiles = [];
+    for (const [path] of stored) {
+        if (!currentPaths.has(path)) {
+            removedFiles.push(path);
+        }
+    }
+    return {
+        new: newFiles,
+        changed: changedFiles,
+        unchanged: unchangedFiles,
+        removed: removedFiles,
+    };
+}
+/**
+ * Index all sources with incremental support
+ */
+export async function indexSources(sources, baseDir, db, chunkOptions, onProgress, options) {
     const startTime = Date.now();
     let totalFiles = 0;
     let totalChunks = 0;
     let totalSkipped = 0;
+    let totalFilesChanged = 0;
+    let totalFilesUnchanged = 0;
+    let totalFilesRemoved = 0;
+    const forceReindex = options?.force ?? false;
     for (const source of sources) {
         // Phase 1: Discovery
         onProgress?.({
@@ -31,37 +86,48 @@ export async function indexSources(sources, baseDir, db, chunkOptions, onProgres
             current: discovered.files.length,
             total: discovered.files.length,
         });
-        // Phase 2: Chunking
+        // Get stored file hashes for incremental indexing
+        const storedFiles = forceReindex ? new Map() : getStoredFiles(db, source.id);
+        const { new: newFiles, changed: changedFiles, unchanged: unchangedFiles, removed: removedFiles } = categorizeFiles(discovered.files, storedFiles);
+        // Files to process = new + changed
+        const filesToProcess = [...newFiles, ...changedFiles];
+        totalFilesChanged += filesToProcess.length;
+        totalFilesUnchanged += unchangedFiles.length;
+        totalFilesRemoved += removedFiles.length;
+        // Phase 2: Chunking (only for new/changed files)
         onProgress?.({
             phase: 'chunking',
             sourceId: source.id,
             current: 0,
-            total: discovered.files.length,
+            total: filesToProcess.length,
         });
-        const chunks = chunkFiles(discovered.files, chunkOptions);
+        const chunks = chunkFiles(filesToProcess, chunkOptions);
         onProgress?.({
             phase: 'chunking',
             sourceId: source.id,
-            current: discovered.files.length,
-            total: discovered.files.length,
+            current: filesToProcess.length,
+            total: filesToProcess.length,
         });
-        // Phase 3: Embedding
-        const embeddedChunks = await embedChunks(chunks, (current, total) => {
-            onProgress?.({
-                phase: 'embedding',
-                sourceId: source.id,
-                current,
-                total,
+        // Phase 3: Embedding (only for new/changed files)
+        let embeddedChunks = [];
+        if (chunks.length > 0) {
+            embeddedChunks = await embedChunks(chunks, (current, total) => {
+                onProgress?.({
+                    phase: 'embedding',
+                    sourceId: source.id,
+                    current,
+                    total,
+                });
             });
-        });
-        // Phase 4: Store in database
+        }
+        // Phase 4: Store in database (incremental)
         onProgress?.({
             phase: 'storing',
             sourceId: source.id,
             current: 0,
             total: embeddedChunks.length,
         });
-        storeChunks(db, source.id, source.path, embeddedChunks, discovered.files.length);
+        storeChunksIncremental(db, source.id, source.path, embeddedChunks, filesToProcess, removedFiles, discovered.files.length);
         totalChunks += embeddedChunks.length;
         onProgress?.({
             phase: 'storing',
@@ -75,18 +141,63 @@ export async function indexSources(sources, baseDir, db, chunkOptions, onProgres
         files: totalFiles,
         chunks: totalChunks,
         skipped: totalSkipped,
+        filesChanged: totalFilesChanged,
+        filesUnchanged: totalFilesUnchanged,
+        filesRemoved: totalFilesRemoved,
         timeMs: Date.now() - startTime,
     };
 }
 /**
- * Store chunks in the database
+ * Generate unique file ID
  */
-function storeChunks(db, sourceId, sourcePath, chunks, fileCount) {
+function generateFileId(sourceId, filePath) {
+    const base = `${sourceId}:${filePath}`;
+    return createHash('sha256').update(base).digest('hex').slice(0, 16);
+}
+/**
+ * Store chunks incrementally (only for changed files)
+ */
+function storeChunksIncremental(db, sourceId, sourcePath, chunks, processedFiles, removedFiles, totalFileCount) {
     // Begin transaction for performance
     const transaction = db.transaction(() => {
-        // Clear existing chunks for this source
-        db.prepare('DELETE FROM chunks WHERE source_id = ?').run(sourceId);
+        // FIRST: Ensure source exists (for foreign key constraints)
+        db.prepare(`
+      INSERT INTO sources (id, path, file_count, chunk_count, indexed_at)
+      VALUES (?, ?, 0, 0, datetime('now'))
+      ON CONFLICT(id) DO NOTHING
+    `).run(sourceId, sourcePath);
+        // Delete chunks for removed files
+        if (removedFiles.length > 0) {
+            const deleteChunks = db.prepare('DELETE FROM chunks WHERE source_id = ? AND file_path = ?');
+            const deleteFile = db.prepare('DELETE FROM files WHERE source_id = ? AND file_path = ?');
+            for (const filePath of removedFiles) {
+                deleteChunks.run(sourceId, filePath);
+                deleteFile.run(sourceId, filePath);
+            }
+        }
+        // Delete chunks for processed (changed) files - they'll be replaced
+        if (processedFiles.length > 0) {
+            const deleteChunks = db.prepare('DELETE FROM chunks WHERE source_id = ? AND file_path = ?');
+            for (const file of processedFiles) {
+                deleteChunks.run(sourceId, file.relativePath);
+            }
+        }
+        // Insert/update file records with new hashes
+        const upsertFile = db.prepare(`
+      INSERT INTO files (id, source_id, file_path, content_hash, indexed_at)
+      VALUES (?, ?, ?, ?, datetime('now'))
+      ON CONFLICT(source_id, file_path) DO UPDATE SET
+        content_hash = excluded.content_hash,
+        indexed_at = excluded.indexed_at
+    `);
+        for (const file of processedFiles) {
+            const fileId = generateFileId(sourceId, file.relativePath);
+            upsertFile.run(fileId, sourceId, file.relativePath, file.contentHash);
+        }
+        // Get current total chunk count for this source
+        const currentChunkCount = db.prepare('SELECT COUNT(*) as count FROM chunks WHERE source_id = ?').get(sourceId);
         // Update source record
+        const newChunkCount = currentChunkCount.count + chunks.length;
         db.prepare(`
       INSERT INTO sources (id, path, file_count, chunk_count, indexed_at)
       VALUES (?, ?, ?, ?, datetime('now'))
@@ -95,8 +206,8 @@ function storeChunks(db, sourceId, sourcePath, chunks, fileCount) {
         file_count = excluded.file_count,
         chunk_count = excluded.chunk_count,
         indexed_at = excluded.indexed_at
-    `).run(sourceId, sourcePath, fileCount, chunks.length);
-        // Insert chunks
+    `).run(sourceId, sourcePath, totalFileCount, newChunkCount);
+        // Insert new chunks
         const insertChunk = db.prepare(`
       INSERT INTO chunks (id, source_id, file_path, content, start_line, end_line, tokens, embedding)
       VALUES (?, ?, ?, ?, ?, ?, ?, ?)
@@ -117,7 +228,7 @@ export function readEmbedding(blob) {
     return Array.from(float32Array);
 }
 // Re-export types and functions
-export { discoverFiles } from './discovery.js';
+export { discoverFiles, computeContentHash } from './discovery.js';
 export { chunkFiles, chunkFile, countTokens } from './chunker.js';
 export { embed, embedBatch, embedChunks, cosineSimilarity, EMBEDDING_DIM, } from './embeddings.js';
 //# sourceMappingURL=index.js.map

package/dist/indexer/index.js.map

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package/dist/mcp/index.d.ts

@@ -0,0 +1,7 @@
+/**
+ * MCP (Model Context Protocol) Server
+ *
+ * Exports the MCP server for use as a standalone server or embedded in other applications.
+ */
+export { createMcpServer, startMcpServer } from "./server.js";
+//# sourceMappingURL=index.d.ts.map

package/dist/mcp/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/mcp/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,eAAe,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC"}

package/dist/mcp/index.js

@@ -0,0 +1,7 @@
+/**
+ * MCP (Model Context Protocol) Server
+ *
+ * Exports the MCP server for use as a standalone server or embedded in other applications.
+ */
+export { createMcpServer, startMcpServer } from "./server.js";
+//# sourceMappingURL=index.js.map

package/dist/mcp/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/mcp/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,eAAe,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC"}

package/dist/mcp/server.d.ts

@@ -0,0 +1,20 @@
+/**
+ * ContextKit MCP Server
+ *
+ * Model Context Protocol server for ContextKit.
+ * Allows AI assistants (Claude Desktop, etc.) to use ContextKit for context selection.
+ *
+ * Usage:
+ *   contextkit mcp          # Start MCP server (stdio)
+ *   contextkit-mcp          # Standalone MCP server
+ */
+import { Server } from "@modelcontextprotocol/sdk/server/index.js";
+/**
+ * Create and configure the MCP server
+ */
+export declare function createMcpServer(): Server;
+/**
+ * Start the MCP server with stdio transport
+ */
+export declare function startMcpServer(): Promise<void>;
+//# sourceMappingURL=server.d.ts.map

package/dist/mcp/server.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"server.d.ts","sourceRoot":"","sources":["../../src/mcp/server.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,EAAE,MAAM,EAAE,MAAM,2CAA2C,CAAC;AAwCnE;;GAEG;AACH,wBAAgB,eAAe,IAAI,MAAM,CAuOxC;AAED;;GAEG;AACH,wBAAsB,cAAc,IAAI,OAAO,CAAC,IAAI,CAAC,CAIpD"}

package/dist/mcp/server.js

@@ -0,0 +1,252 @@
+/**
+ * ContextKit MCP Server
+ *
+ * Model Context Protocol server for ContextKit.
+ * Allows AI assistants (Claude Desktop, etc.) to use ContextKit for context selection.
+ *
+ * Usage:
+ *   contextkit mcp          # Start MCP server (stdio)
+ *   contextkit-mcp          # Standalone MCP server
+ */
+import { Server } from "@modelcontextprotocol/sdk/server/index.js";
+import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
+import { CallToolRequestSchema, ListToolsRequestSchema, } from "@modelcontextprotocol/sdk/types.js";
+import { readFileSync } from "fs";
+import { fileURLToPath } from "url";
+import { dirname, join } from "path";
+import { isInitialized, loadConfig } from "../config/index.js";
+import { openDatabase } from "../db/index.js";
+import { selectContext } from "../selector/index.js";
+import { indexSources } from "../indexer/index.js";
+// Get version from package.json
+const __dirname = dirname(fileURLToPath(import.meta.url));
+const pkg = JSON.parse(readFileSync(join(__dirname, '..', '..', 'package.json'), 'utf-8'));
+const VERSION = pkg.version;
+/**
+ * Get index statistics from database
+ */
+function getIndexStats(db) {
+    const chunkCount = db
+        .prepare("SELECT COUNT(*) as count FROM chunks")
+        .get();
+    const sourceCount = db
+        .prepare("SELECT COUNT(DISTINCT source_id) as count FROM chunks")
+        .get();
+    return {
+        totalChunks: chunkCount.count,
+        totalSources: sourceCount.count,
+    };
+}
+/**
+ * Create and configure the MCP server
+ */
+export function createMcpServer() {
+    const server = new Server({
+        name: "contextkit",
+        version: VERSION,
+    }, {
+        capabilities: {
+            tools: {},
+        },
+    });
+    // List available tools
+    server.setRequestHandler(ListToolsRequestSchema, async () => {
+        return {
+            tools: [
+                {
+                    name: "contextkit_select",
+                    description: "Select optimal context chunks for a query from indexed codebase. Returns the most relevant code and documentation for your task.",
+                    inputSchema: {
+                        type: "object",
+                        properties: {
+                            query: {
+                                type: "string",
+                                description: "What you need context for (e.g., 'How does authentication work?')",
+                            },
+                            budget: {
+                                type: "number",
+                                description: "Maximum tokens to return (default: 8000)",
+                            },
+                            sources: {
+                                type: "string",
+                                description: "Comma-separated list of sources to filter (optional)",
+                            },
+                        },
+                        required: ["query"],
+                    },
+                },
+                {
+                    name: "contextkit_index",
+                    description: "Index or re-index the codebase. Run this after making changes to ensure context is up to date.",
+                    inputSchema: {
+                        type: "object",
+                        properties: {},
+                    },
+                },
+                {
+                    name: "contextkit_status",
+                    description: "Get the current status of the ContextKit index, including chunk counts and source information.",
+                    inputSchema: {
+                        type: "object",
+                        properties: {},
+                    },
+                },
+            ],
+        };
+    });
+    // Handle tool calls
+    server.setRequestHandler(CallToolRequestSchema, async (request) => {
+        const { name, arguments: args } = request.params;
+        try {
+            switch (name) {
+                case "contextkit_select": {
+                    if (!isInitialized()) {
+                        return {
+                            content: [
+                                {
+                                    type: "text",
+                                    text: "ContextKit not initialized. Run `contextkit init` first.",
+                                },
+                            ],
+                            isError: true,
+                        };
+                    }
+                    const query = args?.query || "";
+                    const budget = args?.budget || 8000;
+                    const sourcesStr = args?.sources;
+                    const sources = sourcesStr
+                        ? sourcesStr.split(",").map((s) => s.trim())
+                        : undefined;
+                    if (!query) {
+                        return {
+                            content: [{ type: "text", text: "Error: query is required" }],
+                            isError: true,
+                        };
+                    }
+                    const db = openDatabase();
+                    try {
+                        const options = {
+                            query,
+                            budget,
+                            sources,
+                        };
+                        const result = await selectContext(db, options);
+                        if (result.isEmpty) {
+                            return {
+                                content: [
+                                    {
+                                        type: "text",
+                                        text: "No indexed content. Run `contextkit index` first.",
+                                    },
+                                ],
+                            };
+                        }
+                        if (result.output.data.chunks.length === 0) {
+                            return {
+                                content: [
+                                    {
+                                        type: "text",
+                                        text: `No relevant context found for query: "${query}"`,
+                                    },
+                                ],
+                            };
+                        }
+                        // Return formatted output
+                        return {
+                            content: [{ type: "text", text: result.output.text }],
+                        };
+                    }
+                    finally {
+                        db.close();
+                    }
+                }
+                case "contextkit_index": {
+                    if (!isInitialized()) {
+                        return {
+                            content: [
+                                {
+                                    type: "text",
+                                    text: "ContextKit not initialized. Run `contextkit init` first.",
+                                },
+                            ],
+                            isError: true,
+                        };
+                    }
+                    const config = loadConfig();
+                    const db = openDatabase();
+                    try {
+                        const stats = await indexSources(config.sources, process.cwd(), db, {
+                            chunkSize: config.settings.chunk_size,
+                            chunkOverlap: config.settings.chunk_overlap,
+                        });
+                        return {
+                            content: [
+                                {
+                                    type: "text",
+                                    text: `Indexed ${stats.chunks} chunks from ${stats.files} files.`,
+                                },
+                            ],
+                        };
+                    }
+                    finally {
+                        db.close();
+                    }
+                }
+                case "contextkit_status": {
+                    if (!isInitialized()) {
+                        return {
+                            content: [
+                                {
+                                    type: "text",
+                                    text: "ContextKit not initialized in current directory.",
+                                },
+                            ],
+                        };
+                    }
+                    const config = loadConfig();
+                    const db = openDatabase();
+                    try {
+                        const stats = getIndexStats(db);
+                        const statusText = [
+                            "ContextKit Status",
+                            "=================",
+                            `Sources configured: ${config.sources.length}`,
+                            `Chunks indexed: ${stats.totalChunks}`,
+                            "",
+                            "Sources:",
+                            ...config.sources.map((s) => `  - ${s.id}: ${s.path}`),
+                        ].join("\n");
+                        return {
+                            content: [{ type: "text", text: statusText }],
+                        };
+                    }
+                    finally {
+                        db.close();
+                    }
+                }
+                default:
+                    return {
+                        content: [{ type: "text", text: `Unknown tool: ${name}` }],
+                        isError: true,
+                    };
+            }
+        }
+        catch (error) {
+            const message = error instanceof Error ? error.message : String(error);
+            return {
+                content: [{ type: "text", text: `Error: ${message}` }],
+                isError: true,
+            };
+        }
+    });
+    return server;
+}
+/**
+ * Start the MCP server with stdio transport
+ */
+export async function startMcpServer() {
+    const server = createMcpServer();
+    const transport = new StdioServerTransport();
+    await server.connect(transport);
+}
+//# sourceMappingURL=server.js.map

package/dist/mcp/server.js.map

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package/dist/mcp-server.d.ts

@@ -0,0 +1,18 @@
+#!/usr/bin/env node
+/**
+ * ContextKit MCP Server (Standalone)
+ *
+ * Start the MCP server directly without the CLI wrapper.
+ * This is useful for Claude Desktop configuration.
+ *
+ * Usage in claude_desktop_config.json:
+ * {
+ *   "mcpServers": {
+ *     "contextkit": {
+ *       "command": "contextkit-mcp"
+ *     }
+ *   }
+ * }
+ */
+export {};
+//# sourceMappingURL=mcp-server.d.ts.map

package/dist/mcp-server.d.ts.map

@@ -0,0 +1 @@
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package/dist/mcp-server.js

@@ -0,0 +1,22 @@
+#!/usr/bin/env node
+/**
+ * ContextKit MCP Server (Standalone)
+ *
+ * Start the MCP server directly without the CLI wrapper.
+ * This is useful for Claude Desktop configuration.
+ *
+ * Usage in claude_desktop_config.json:
+ * {
+ *   "mcpServers": {
+ *     "contextkit": {
+ *       "command": "contextkit-mcp"
+ *     }
+ *   }
+ * }
+ */
+import { startMcpServer } from "./mcp/server.js";
+startMcpServer().catch((error) => {
+    console.error("Failed to start MCP server:", error);
+    process.exit(1);
+});
+//# sourceMappingURL=mcp-server.js.map

package/dist/mcp-server.js.map

@@ -0,0 +1 @@
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package/dist/selector/budget.d.ts

@@ -21,6 +21,8 @@ export declare function fitToBudget(chunks: RankedChunk[], budget: number): Budg
 /**
  * Merge adjacent chunks from the same file
  * (Optional optimization for cleaner output)
+ *
+ * Handles overlapping chunks by removing duplicate lines.
  */
 export declare function mergeAdjacentChunks(chunks: RankedChunk[]): RankedChunk[];
 //# sourceMappingURL=budget.d.ts.map

package/dist/selector/budget.d.ts.map

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