@miller-tech/uap 1.175.13 → 1.178.1

package/dist/self-harness/mods.js

@@ -62,6 +62,47 @@ export const MIDDLEWARE_IDS = ['toolcall-path-normalizer'];
 export function isMiddlewareId(s) {
     return MIDDLEWARE_IDS.includes(s);
 }
+// ---------------------------------------------------------------------------
+// Tool Mods (harness plan area B1, 2026-07-31).
+//
+// WHY these exist: the self-harness search space was env knobs ONLY — the
+// inference server's launch parameters. The Agentic-Harness-Engineering ablation
+// (arXiv 2604.25850) measures where harness gains actually come from:
+//
+//     long-term memory +5.6pp | tools +3.3pp | middleware +2.2pp | prompt -2.3pp
+//
+// Server knobs are not on that list, and prompt edits are NEGATIVE. So the loop
+// was searching the one surface with no measured value while the surfaces with
+// measured value were gated behind a human.
+//
+// Tool knobs are CLIENT-side (the executor reads them per run), which is also
+// why they can auto-validate where env knobs could not: flipping one needs an
+// environment variable on the candidate arm, not a server restart.
+// ---------------------------------------------------------------------------
+export const TOOL_KNOB_ALLOWLIST = {
+    UAP_EDIT_TOLERANT: {
+        target: 'executor', type: 'enum', values: ['0', '1'],
+        description: 'edit_file falls back to whitespace-tolerant matching on an exact miss',
+    },
+    UAP_EDIT_DIAGNOSTICS: {
+        target: 'executor', type: 'enum', values: ['0', '1'],
+        description: 'a failed edit returns the nearest current region instead of "not found"',
+    },
+    UAP_READ_WINDOW_BYTES: {
+        target: 'executor', type: 'number', min: 2000, max: 32000, integer: true,
+        description: 'bytes of a file read_file returns per call',
+    },
+    UAP_MAX_TOOL_ROUNDS: {
+        target: 'executor', type: 'number', min: 4, max: 40, integer: true,
+        description: 'tool-call rounds before a final answer is forced',
+    },
+};
+export function isKnownToolKnob(k) {
+    return Object.prototype.hasOwnProperty.call(TOOL_KNOB_ALLOWLIST, k);
+}
+export function toolKnobSpec(key) {
+    return TOOL_KNOB_ALLOWLIST[key];
+}
 /**
  * Validate a Mod against the DSL constraints. A proposer's output that fails
  * this is rejected at parse time — it never reaches the apply/validate stages.
@@ -115,6 +156,33 @@ export function validateMod(mod) {
         }
         case 'config':
             return validateConfigMod(mod);
+        case 'tool': {
+            // Same bounds discipline as an env knob: an out-of-range tool knob is
+            // rejected at parse time, never handed to a bench arm.
+            if (!isKnownToolKnob(mod.key)) {
+                return { ok: false, reason: `unknown/non-allow-listed tool knob: ${String(mod.key)}` };
+            }
+            const spec = toolKnobSpec(mod.key);
+            if (spec.type === 'number') {
+                const n = Number(mod.to);
+                if (!Number.isFinite(n))
+                    return { ok: false, reason: `${mod.key}: "${mod.to}" is not numeric` };
+                if (spec.integer && !Number.isInteger(n)) {
+                    return { ok: false, reason: `${mod.key}: must be an integer, got ${mod.to}` };
+                }
+                if (n < spec.min || n > spec.max) {
+                    return {
+                        ok: false,
+                        reason: `${mod.key}=${mod.to} out of safe range [${spec.min}, ${spec.max}]`,
+                    };
+                }
+                return { ok: true };
+            }
+            if (!spec.values.includes(mod.to)) {
+                return { ok: false, reason: `${mod.key}="${mod.to}" not in {${spec.values.join(', ')}}` };
+            }
+            return { ok: true };
+        }
         default:
             return { ok: false, reason: `unknown mod kind` };
     }
@@ -164,6 +232,8 @@ export function describeMod(mod) {
             return `middleware ${mod.id}(${JSON.stringify(mod.params)})`;
         case 'config':
             return `config ${mod.key}: ${mod.from} -> ${mod.to}`;
+        case 'tool':
+            return `tool ${mod.key}: ${mod.from} -> ${mod.to}`;
     }
 }
 /**
@@ -188,6 +258,8 @@ export function invertMod(mod) {
             return { kind: 'middleware', id: mod.id, params: { ...mod.params, enabled: false } };
         case 'config':
             return { kind: 'config', key: mod.key, from: mod.to, to: mod.from, category: mod.category };
+        case 'tool':
+            return { kind: 'tool', key: mod.key, from: mod.to, to: mod.from };
     }
 }
 //# sourceMappingURL=mods.js.map

package/dist/self-harness/mods.js.map

@@ -1 +1 @@
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package/dist/self-harness/orchestrator.d.ts

@@ -19,6 +19,7 @@ import { Proposer } from './propose.js';
 import { Decision, DecisionOptions } from './decide.js';
 import { HarnessProfile } from './profile.js';
 import { TransferStore } from './transfer.js';
+import { ManifestStore, type ChangeManifest, type ManifestAttribution, type ManifestDecision, type ManifestPolicyOptions } from './manifest.js';
 export interface ValidationOutcome {
     validation: Comparison;
     /** Held-out comparison; null when the held-out suite was skipped. */
@@ -42,6 +43,20 @@ export interface OrchestratorOptions {
     /** ISO timestamp + provenance string stamped on recorded transfer entries. */
     validatedAt?: string;
     provenance?: string;
+    /**
+     * Change-manifest store (harness plan C). Supplied -> every accepted Mod is
+     * recorded as a falsifiable prediction, and any manifest left open by a PRIOR
+     * iteration is attributed against this iteration's records first. Omitted ->
+     * the loop behaves exactly as before.
+     */
+    manifests?: ManifestStore;
+    /**
+     * The records the PREVIOUS iteration saw, needed to attribute open manifests
+     * (before vs after). Omit on the first iteration.
+     */
+    priorRecords?: RunRecord[];
+    /** Policy for turning an attribution into keep/revert. */
+    manifestPolicy?: ManifestPolicyOptions;
 }
 export interface CandidateOutcome {
     mod: Mod;
@@ -55,6 +70,18 @@ export interface IterationResult {
     accepted: Mod[];
     /** Profile after applying all accepted Mods. */
     profile: HarnessProfile;
+    /**
+     * Manifests from prior iterations whose predictions failed this round, with
+     * the inverse Mod already applied to `profile` (harness plan C). The caller
+     * physically applies each `revert` through the same seam it uses to apply an
+     * accepted Mod.
+     */
+    reverted: RevertedChange[];
+}
+export interface RevertedChange {
+    manifest: ChangeManifest;
+    attribution: ManifestAttribution;
+    decision: ManifestDecision;
 }
 /** Run one self-harness iteration. */
 export declare function runIteration(opts: OrchestratorOptions): Promise<IterationResult>;

package/dist/self-harness/orchestrator.d.ts.map

@@ -1 +1 @@
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package/dist/self-harness/orchestrator.js

@@ -16,11 +16,30 @@ import { mineFromRecords } from './mine.js';
 import { heuristicProposer } from './propose.js';
 import { decideAccept } from './decide.js';
 import { modKey, makeEntry } from './transfer.js';
+import { makeManifest, attributeManifest, decideManifest, } from './manifest.js';
 /** Run one self-harness iteration. */
 export async function runIteration(opts) {
     const log = opts.log ?? (() => { });
     const proposer = opts.proposer ?? heuristicProposer;
     const maxC = opts.maxCandidates ?? 3;
+    // Stage 0 — attribute prior manifests BEFORE proposing anything new
+    // (harness plan C). Order matters: a change that failed its own prediction
+    // must be undone before this round mines weaknesses from records it polluted,
+    // or the loop proposes fixes for damage it is about to revert anyway.
+    const reverted = [];
+    let profile = opts.profile;
+    if (opts.manifests && opts.priorRecords) {
+        for (const manifest of opts.manifests.open()) {
+            const attribution = attributeManifest(manifest, opts.priorRecords, opts.records);
+            const decision = decideManifest(manifest, attribution, opts.manifestPolicy);
+            opts.manifests.close(manifest, attribution, decision);
+            log(`manifest ${manifest.id}: ${decision.verdict.toUpperCase()} — ${decision.reason}`);
+            if (decision.verdict === 'revert' && decision.revert) {
+                profile = applyAcceptedToProfile(profile, decision.revert);
+                reverted.push({ manifest, attribution, decision });
+            }
+        }
+    }
     // Stage 1 — mine
     const weaknesses = mineFromRecords(opts.records, {
         model: opts.model,
@@ -28,14 +47,22 @@ export async function runIteration(opts) {
     });
     log(`mined ${weaknesses.length} weakness(es): ${weaknesses.map((w) => w.kind).join(', ') || '(none)'}`);
     // Stage 2 — propose (bounded, minimal)
-    const proposed = proposer.propose(weaknesses, opts.profile).slice(0, maxC);
+    // `profile`, not `opts.profile`: stage 0 may have reverted a knob, and
+    // proposing against the pre-revert value would immediately re-propose the
+    // change just undone and record a `from` that was never in force.
+    const proposed = proposer.propose(weaknesses, profile).slice(0, maxC);
     log(`proposed ${proposed.length} candidate Mod(s) via ${proposer.id}`);
     // Stage 3+4 — validate + decide, each candidate in isolation
     const outcomes = [];
     const accepted = [];
-    let profile = opts.profile;
     for (const mod of proposed) {
         log(`validating: ${describeMod(mod)}`);
+        // Attribute BEFORE anything mutates the profile. attributeWeakness works by
+        // re-running the proposer and matching the Mod it emits; once the accepted
+        // Mod has been folded into the profile the proposer no longer re-derives it,
+        // so attribution silently returns null. (That ordering bug also cost the
+        // transfer store its attribution — both call sites now share this value.)
+        const weakness = attributeWeakness(mod, weaknesses, proposer, profile);
         let decision;
         try {
             const { validation, heldout } = await opts.validate(mod);
@@ -55,12 +82,23 @@ export async function runIteration(opts) {
         if (ok) {
             accepted.push(mod);
             profile = applyAcceptedToProfile(profile, mod);
+            // Acceptance is PROVISIONAL: record the prediction so the next iteration
+            // can falsify it (harness plan C). The tasks this Mod's weakness was mined
+            // from are its predicted fixes — that is the claim it is making.
+            if (opts.manifests) {
+                opts.manifests.record(makeManifest({
+                    id: `${modKey(mod)}@${opts.validatedAt ?? outcomes.length}`,
+                    mod,
+                    now: opts.validatedAt ?? '',
+                    predictedFixes: weakness?.affectedTasks ?? [],
+                }));
+            }
         }
         // Record the outcome (accept OR reject) into the transfer store, attributed
         // to the weakness whose heuristic produced this Mod, so the fix transfers to
         // future models and known-bad Mods aren't re-proposed.
         if (opts.transferStore) {
-            const w = attributeWeakness(mod, weaknesses, proposer, profile);
+            const w = weakness;
             if (w) {
                 opts.transferStore.record(makeEntry({
                     signature: w.signature,
@@ -75,7 +113,7 @@ export async function runIteration(opts) {
             }
         }
     }
-    return { weaknesses, proposed, outcomes, accepted, profile };
+    return { weaknesses, proposed, outcomes, accepted, profile, reverted };
 }
 /**
  * Attribute a Mod back to the weakness that produced it, by re-running the
@@ -109,6 +147,11 @@ function applyAcceptedToProfile(profile, mod) {
             // A settings-registry change lives in .uap.json / proxy.env, not in the
             // in-memory harness profile — the self-tuning flag-writer applies it.
             return profile;
+        case 'tool':
+            // A SEPARATE field from `env`: tool knobs are executor-side and disjoint
+            // from the server's launch env, and `profileFromEnvFile` filters `env` on
+            // `isKnownKnob`, so folding them together dropped them on every reload.
+            return { ...profile, tool: { ...(profile.tool ?? {}), [mod.key]: mod.to } };
     }
 }
 //# sourceMappingURL=orchestrator.js.map

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package/dist/self-harness/pending.d.ts

@@ -11,9 +11,23 @@ import { Mod } from './mods.js';
 import { FailureKind } from './weakness.js';
 export type PromotionGate = 'auto-after-validation' | 'human';
 /**
- * Promotion policy: env-knob Mods are low-risk and may auto-promote after they
- * pass validation; scaffold + middleware Mods change behavior more broadly and
- * always require a human gate. This is the safety boundary for online learning.
+ * Promotion policy — a RISK TIER, not a category ban (harness plan B3).
+ *
+ * The old rule was `env ? auto : human`, which gated middleware behind a human
+ * and left the loop searching inference-server knobs alone. The
+ * Agentic-Harness-Engineering ablation (arXiv 2604.25850) measures where gains
+ * actually live — tools +3.3pp, middleware +2.2pp, memory +5.6pp, and
+ * system-prompt edits NEGATIVE at -2.3pp — so that rule had the search space
+ * almost exactly inverted.
+ *
+ * The tiers now follow blast radius rather than kind:
+ *
+ *   auto-after-validation — env knobs, tool knobs, middleware toggles. All are
+ *     bounded, allow-listed, mechanically reversible, and measurable by the
+ *     paired bench with its held-out suite.
+ *   human — scaffold (free-form prompt text: unbounded, and the one surface
+ *     measured negative) and config (settings-registry keys reaching beyond the
+ *     bench into product behaviour).
  */
 export declare function promotionGate(mod: Mod): PromotionGate;
 export interface PendingProposal {

package/dist/self-harness/pending.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"pending.d.ts","sourceRoot":"","sources":["../../src/self-harness/pending.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAIH,OAAO,EAAE,GAAG,EAAE,MAAM,WAAW,CAAC;AAChC,OAAO,EAAE,WAAW,EAAE,MAAM,eAAe,CAAC;AAE5C,MAAM,MAAM,aAAa,GAAG,uBAAuB,GAAG,OAAO,CAAC;AAE9D;;;;;;;;;;;;;;;;;;GAkBG;AACH,wBAAgB,aAAa,CAAC,GAAG,EAAE,GAAG,GAAG,aAAa,CAUrD;AAED,MAAM,WAAW,eAAe;IAC9B,EAAE,EAAE,MAAM,CAAC;IACX,SAAS,EAAE,MAAM,CAAC;IAClB,IAAI,EAAE,WAAW,CAAC;IAClB,KAAK,EAAE,MAAM,CAAC;IACd,GAAG,EAAE,GAAG,CAAC;IACT,IAAI,EAAE,aAAa,CAAC;IACpB,kEAAkE;IAClE,MAAM,EAAE,MAAM,CAAC;IACf,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,MAAM,CAAC;IAClB,MAAM,EAAE,SAAS,GAAG,WAAW,GAAG,UAAU,GAAG,UAAU,CAAC;IAC1D,0BAA0B;IAC1B,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,qBAAa,YAAY;IAGX,OAAO,CAAC,QAAQ,CAAC,IAAI;IAFjC,OAAO,CAAC,KAAK,CAAyB;gBAET,IAAI,EAAE,MAAM;IAUzC,OAAO,CAAC,OAAO;IAKf,mFAAmF;IACnF,OAAO,CAAC,CAAC,EAAE,IAAI,CAAC,eAAe,EAAE,MAAM,GAAG,QAAQ,GAAG,WAAW,CAAC,GAAG;QAAE,SAAS,EAAE,MAAM,CAAA;KAAE,GAAG,eAAe;IAgB3G,IAAI,CAAC,MAAM,CAAC,EAAE,eAAe,CAAC,QAAQ,CAAC,GAAG,eAAe,EAAE;IAI3D,MAAM,CAAC,EAAE,EAAE,MAAM,EAAE,KAAK,EAAE,OAAO,CAAC,eAAe,CAAC,GAAG,IAAI;IAQzD;;;;OAIG;IACH,KAAK,CAAC,IAAI,GAAE;QAAE,UAAU,CAAC,EAAE,MAAM,CAAC;QAAC,cAAc,CAAC,EAAE,MAAM,CAAC;QAAC,GAAG,CAAC,EAAE,MAAM,CAAA;KAAO,GAAG,eAAe,EAAE;CAkBpG"}

package/dist/self-harness/pending.js

@@ -10,12 +10,34 @@
 import { existsSync, mkdirSync, readFileSync, writeFileSync } from 'fs';
 import { dirname } from 'path';
 /**
- * Promotion policy: env-knob Mods are low-risk and may auto-promote after they
- * pass validation; scaffold + middleware Mods change behavior more broadly and
- * always require a human gate. This is the safety boundary for online learning.
+ * Promotion policy — a RISK TIER, not a category ban (harness plan B3).
+ *
+ * The old rule was `env ? auto : human`, which gated middleware behind a human
+ * and left the loop searching inference-server knobs alone. The
+ * Agentic-Harness-Engineering ablation (arXiv 2604.25850) measures where gains
+ * actually live — tools +3.3pp, middleware +2.2pp, memory +5.6pp, and
+ * system-prompt edits NEGATIVE at -2.3pp — so that rule had the search space
+ * almost exactly inverted.
+ *
+ * The tiers now follow blast radius rather than kind:
+ *
+ *   auto-after-validation — env knobs, tool knobs, middleware toggles. All are
+ *     bounded, allow-listed, mechanically reversible, and measurable by the
+ *     paired bench with its held-out suite.
+ *   human — scaffold (free-form prompt text: unbounded, and the one surface
+ *     measured negative) and config (settings-registry keys reaching beyond the
+ *     bench into product behaviour).
  */
 export function promotionGate(mod) {
-    return mod.kind === 'env' ? 'auto-after-validation' : 'human';
+    switch (mod.kind) {
+        case 'env':
+        case 'tool':
+        case 'middleware':
+            return 'auto-after-validation';
+        case 'scaffold':
+        case 'config':
+            return 'human';
+    }
 }
 export class PendingQueue {
     path;

package/dist/self-harness/pending.js.map

@@ -1 +1 @@
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package/dist/self-harness/profile.d.ts

@@ -12,7 +12,7 @@
  * and one-command revertible (design §4, §10).
  */
 import type { UapComponent } from '../benchmarks/paired/types.js';
-import { KnownKnob, EnvMod } from './mods.js';
+import { KnownKnob, KnownToolKnob, EnvMod } from './mods.js';
 export interface HarnessProfile {
     /** Allow-listed env knob values currently in effect (string form). */
     env: Partial<Record<KnownKnob, string>>;
@@ -20,6 +20,14 @@ export interface HarnessProfile {
     scaffold: Partial<Record<UapComponent, string>>;
     /** Accepted middleware configs (id -> params). */
     middleware: Record<string, Record<string, string | number | boolean>>;
+    /**
+     * Accepted TOOL knob values (harness plan B1). A separate field from `env`
+     * because the two are disjoint key sets read by different processes: `env` is
+     * the inference server's launch environment, `tool` is the delivery
+     * executor's. Folding tool knobs into `env` made the declared type a lie and
+     * broke round-tripping, since `profileFromEnvFile` filters on `isKnownKnob`.
+     */
+    tool?: Partial<Record<KnownToolKnob, string>>;
 }
 export declare function emptyProfile(): HarnessProfile;
 /** Parse a KEY=value env file into a flat map (ignores comments/blank lines). */
@@ -35,6 +43,14 @@ export declare function profileFromEnvFile(path: string): HarnessProfile;
 export declare function applyEnvModToFile(path: string, mod: EnvMod): {
     priorValue: string | null;
 };
+/**
+ * Set KEY=value in a KEY=value file, replacing an existing entry or appending.
+ * Extracted from `applyEnvModToFile` so runtime (tool/middleware) knobs persist
+ * through exactly the same writer as env knobs.
+ */
+export declare function upsertEnvValue(path: string, key: string, value: string): {
+    priorValue: string | null;
+};
 /** Apply an accepted Mod's effect to the in-memory profile (after acceptance). */
 export declare function recordModInProfile(profile: HarnessProfile, mod: EnvMod): HarnessProfile;
 /** Default values for allow-listed knobs (used to seed a profile if a knob is unset). */

package/dist/self-harness/profile.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"profile.d.ts","sourceRoot":"","sources":["../../src/self-harness/profile.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAIH,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,+BAA+B,CAAC;AAClE,OAAO,EAAkB,SAAS,EAAE,aAAa,EAAE,MAAM,EAAe,MAAM,WAAW,CAAC;AAE1F,MAAM,WAAW,cAAc;IAC7B,sEAAsE;IACtE,GAAG,EAAE,OAAO,CAAC,MAAM,CAAC,SAAS,EAAE,MAAM,CAAC,CAAC,CAAC;IACxC,sEAAsE;IACtE,QAAQ,EAAE,OAAO,CAAC,MAAM,CAAC,YAAY,EAAE,MAAM,CAAC,CAAC,CAAC;IAChD,kDAAkD;IAClD,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,GAAG,OAAO,CAAC,CAAC,CAAC;IACtE;;;;;;OAMG;IACH,IAAI,CAAC,EAAE,OAAO,CAAC,MAAM,CAAC,aAAa,EAAE,MAAM,CAAC,CAAC,CAAC;CAC/C;AAED,wBAAgB,YAAY,IAAI,cAAc,CAE7C;AAED,iFAAiF;AACjF,wBAAgB,YAAY,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAWjE;AAED,yEAAyE;AACzE,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,GAAG,cAAc,CAO/D;AAED;;;;;GAKG;AACH,wBAAgB,iBAAiB,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,GAAG;IAAE,UAAU,EAAE,MAAM,GAAG,IAAI,CAAA;CAAE,CAE1F;AAED;;;;GAIG;AACH,wBAAgB,cAAc,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG;IAAE,UAAU,EAAE,MAAM,GAAG,IAAI,CAAA;CAAE,CAiBtG;AAED,kFAAkF;AAClF,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,cAAc,EAAE,GAAG,EAAE,MAAM,GAAG,cAAc,CAEvF;AAED,yFAAyF;AACzF,wBAAgB,WAAW,CAAC,GAAG,EAAE,SAAS,GAAG,MAAM,GAAG,IAAI,CAMzD;AAMD;;;GAGG;AACH,MAAM,WAAW,eAAe;IAC9B,6EAA6E;IAC7E,OAAO,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,MAAM,CAAC;IACd,OAAO,EAAE,cAAc,CAAC;IACxB,oEAAoE;IACpE,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;CACpB;AAED,sEAAsE;AACtE,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,GAAG,eAAe,GAAG,IAAI,CAOxE;AAED,gFAAgF;AAChF,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,eAAe,GAAG,IAAI,CAG7E"}

package/dist/self-harness/profile.js

@@ -15,7 +15,7 @@ import { readFileSync, writeFileSync, existsSync, mkdirSync } from 'fs';
 import { dirname } from 'path';
 import { KNOB_ALLOWLIST, isKnownKnob } from './mods.js';
 export function emptyProfile() {
-    return { env: {}, scaffold: {}, middleware: {} };
+    return { env: {}, scaffold: {}, middleware: {}, tool: {} };
 }
 /** Parse a KEY=value env file into a flat map (ignores comments/blank lines). */
 export function parseEnvFile(path) {
@@ -50,23 +50,30 @@ export function profileFromEnvFile(path) {
  * file's current value when present (guards against a stale proposal).
  */
 export function applyEnvModToFile(path, mod) {
+    return upsertEnvValue(path, mod.key, mod.to);
+}
+/**
+ * Set KEY=value in a KEY=value file, replacing an existing entry or appending.
+ * Extracted from `applyEnvModToFile` so runtime (tool/middleware) knobs persist
+ * through exactly the same writer as env knobs.
+ */
+export function upsertEnvValue(path, key, value) {
     const lines = existsSync(path) ? readFileSync(path, 'utf-8').split('\n') : [];
     let prior = null;
     let replaced = false;
-    const key = mod.key;
     for (let i = 0; i < lines.length; i++) {
         const t = lines[i].trim();
         if (t.startsWith('#') || !t.includes('='))
             continue;
         if (t.slice(0, t.indexOf('=')).trim() === key) {
             prior = t.slice(t.indexOf('=') + 1).trim();
-            lines[i] = `${key}=${mod.to}`;
+            lines[i] = `${key}=${value}`;
             replaced = true;
             break;
         }
     }
     if (!replaced)
-        lines.push(`${key}=${mod.to}`);
+        lines.push(`${key}=${value}`);
     writeFileSync(path, lines.join('\n'), 'utf-8');
     return { priorValue: prior };
 }

package/dist/self-harness/profile.js.map

@@ -1 +1 @@
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+{"version":3,"file":"profile.js","sourceRoot":"","sources":["../../src/self-harness/profile.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,OAAO,EAAE,YAAY,EAAE,aAAa,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,IAAI,CAAC;AACxE,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAC;AAE/B,OAAO,EAAE,cAAc,EAAoC,WAAW,EAAE,MAAM,WAAW,CAAC;AAmB1F,MAAM,UAAU,YAAY;IAC1B,OAAO,EAAE,GAAG,EAAE,EAAE,EAAE,QAAQ,EAAE,EAAE,EAAE,UAAU,EAAE,EAAE,EAAE,IAAI,EAAE,EAAE,EAAE,CAAC;AAC7D,CAAC;AAED,iFAAiF;AACjF,MAAM,UAAU,YAAY,CAAC,IAAY;IACvC,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC;QAAE,OAAO,EAAE,CAAC;IACjC,MAAM,GAAG,GAA2B,EAAE,CAAC;IACvC,KAAK,MAAM,IAAI,IAAI,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC;QAC3D,MAAM,CAAC,GAAG,IAAI,CAAC,IAAI,EAAE,CAAC;QACtB,IAAI,CAAC,CAAC,IAAI,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC;YAAE,SAAS;QACtC,MAAM,EAAE,GAAG,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;QAC1B,IAAI,EAAE,IAAI,CAAC;YAAE,SAAS;QACtB,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC,GAAG,CAAC,CAAC,KAAK,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;IACtD,CAAC;IACD,OAAO,GAAG,CAAC;AACb,CAAC;AAED,yEAAyE;AACzE,MAAM,UAAU,kBAAkB,CAAC,IAAY;IAC7C,MAAM,GAAG,GAAG,YAAY,CAAC,IAAI,CAAC,CAAC;IAC/B,MAAM,CAAC,GAAG,YAAY,EAAE,CAAC;IACzB,KAAK,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC;QACzC,IAAI,WAAW,CAAC,CAAC,CAAC;YAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;IACnC,CAAC;IACD,OAAO,CAAC,CAAC;AACX,CAAC;AAED;;;;;GAKG;AACH,MAAM,UAAU,iBAAiB,CAAC,IAAY,EAAE,GAAW;IACzD,OAAO,cAAc,CAAC,IAAI,EAAE,GAAG,CAAC,GAAG,EAAE,GAAG,CAAC,EAAE,CAAC,CAAC;AAC/C,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,cAAc,CAAC,IAAY,EAAE,GAAW,EAAE,KAAa;IACrE,MAAM,KAAK,GAAG,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;IAC9E,IAAI,KAAK,GAAkB,IAAI,CAAC;IAChC,IAAI,QAAQ,GAAG,KAAK,CAAC;IACrB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACtC,MAAM,CAAC,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;QAC1B,IAAI,CAAC,CAAC,UAAU,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC;YAAE,SAAS;QACpD,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,KAAK,GAAG,EAAE,CAAC;YAC9C,KAAK,GAAG,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;YAC3C,KAAK,CAAC,CAAC,CAAC,GAAG,GAAG,GAAG,IAAI,KAAK,EAAE,CAAC;YAC7B,QAAQ,GAAG,IAAI,CAAC;YAChB,MAAM;QACR,CAAC;IACH,CAAC;IACD,IAAI,CAAC,QAAQ;QAAE,KAAK,CAAC,IAAI,CAAC,GAAG,GAAG,IAAI,KAAK,EAAE,CAAC,CAAC;IAC7C,aAAa,CAAC,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,OAAO,CAAC,CAAC;IAC/C,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,CAAC;AAC/B,CAAC;AAED,kFAAkF;AAClF,MAAM,UAAU,kBAAkB,CAAC,OAAuB,EAAE,GAAW;IACrE,OAAO,EAAE,GAAG,OAAO,EAAE,GAAG,EAAE,EAAE,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,GAAG,CAAC,EAAE,EAAE,EAAE,CAAC;AACpE,CAAC;AAED,yFAAyF;AACzF,MAAM,UAAU,WAAW,CAAC,GAAc;IACxC,4EAA4E;IAC5E,wEAAwE;IACxE,4CAA4C;IAC5C,KAAK,cAAc,CAAC,GAAG,CAAC,CAAC;IACzB,OAAO,IAAI,CAAC;AACd,CAAC;AAqBD,sEAAsE;AACtE,MAAM,UAAU,mBAAmB,CAAC,IAAY;IAC9C,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC;QAAE,OAAO,IAAI,CAAC;IACnC,IAAI,CAAC;QACH,OAAO,IAAI,CAAC,KAAK,CAAC,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC,CAAoB,CAAC;IACpE,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED,gFAAgF;AAChF,MAAM,UAAU,mBAAmB,CAAC,IAAY,EAAE,IAAqB;IACrE,SAAS,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAC9C,aAAa,CAAC,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC,GAAG,IAAI,EAAE,OAAO,CAAC,CAAC;AACrE,CAAC"}

package/dist/self-harness/run.d.ts

@@ -21,8 +21,21 @@ import { HarnessProfile, type ProfileSnapshot } from './profile.js';
 import type { Proposer } from './propose.js';
 import type { DecisionOptions } from './decide.js';
 import type { TransferStore } from './transfer.js';
+import type { ManifestStore, ManifestPolicyOptions } from './manifest.js';
 export interface RunLoopDeps {
     model: string;
+    /**
+     * KEY=value file for executor/proxy runtime knobs (tool + middleware Mods).
+     * Without it those Mods are reported as NOT committed rather than silently
+     * dropped while being announced as applied.
+     */
+    runtimeEnvPath?: string;
+    /** Change-manifest store (harness plan C). Omit to disable the mechanism. */
+    manifests?: ManifestStore;
+    /** Records the PREVIOUS iteration saw, for manifest attribution. */
+    priorRecords?: RunRecord[];
+    /** Policy turning an attribution into keep/revert. */
+    manifestPolicy?: ManifestPolicyOptions;
     /** Baseline records to mine for weaknesses (e.g. a prior paired bench). */
     records: RunRecord[];
     /** Current in-effect harness profile (from the env file or a prior snapshot). */
@@ -56,6 +69,12 @@ export interface RunLoopResult {
     iteration: IterationResult;
     /** Accepted Mods that were physically committed (empty on a dry-run). */
     committed: Mod[];
+    /**
+     * Accepted Mods that were NOT applied to the running system — human-gated
+     * kinds, or runtime knobs with nowhere to persist. Reported so the CLI cannot
+     * tell an operator the harness changed when it did not.
+     */
+    unapplied: Mod[];
     /** True iff a snapshot/history was written (apply + at least one acceptance). */
     persisted: boolean;
     snapshot: ProfileSnapshot | null;

package/dist/self-harness/run.d.ts.map

@@ -1 +1 @@
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