@milaboratories/pl-model-common 1.25.3 → 1.26.1

package/dist/drivers/pframe/spec/spec.js.map

@@ -1 +1 @@
-{"version":3,"file":"spec.js","names":[],"sources":["../../../../src/drivers/pframe/spec/spec.ts"],"sourcesContent":["import { ensureError } from \"../../../errors\";\nimport { canonicalizeJson, type CanonicalizedJson, type StringifiedJson } from \"../../../json\";\nimport type { PObject, PObjectId, PObjectSpec } from \"../../../pool\";\nimport { z } from \"zod\";\n\nexport const ValueType = {\n  Int: \"Int\",\n  Long: \"Long\",\n  Float: \"Float\",\n  Double: \"Double\",\n  String: \"String\",\n  Bytes: \"Bytes\",\n} as const;\n\nexport type AxisValueType = Extract<ValueType, \"Int\" | \"Long\" | \"String\">;\nexport type ColumnValueType = ValueType;\n\n/** PFrame columns and axes within them may store one of these types. */\nexport type ValueType = (typeof ValueType)[keyof typeof ValueType];\n\nexport type Metadata = Record<string, string>;\n\nexport function readMetadata<U extends Metadata, T extends keyof U = keyof U>(\n  metadata: Metadata | undefined,\n  key: T,\n): U[T] | undefined {\n  return (metadata as U | undefined)?.[key];\n}\n\ntype MetadataJsonImpl<M> = {\n  [P in keyof M as M[P] extends StringifiedJson ? P : never]: M[P] extends StringifiedJson<infer U>\n    ? z.ZodType<U>\n    : never;\n};\nexport type MetadataJson<M> = MetadataJsonImpl<Required<M>>;\n\nexport function readMetadataJsonOrThrow<M extends Metadata, T extends keyof MetadataJson<M>>(\n  metadata: Metadata | undefined,\n  metadataJson: MetadataJson<M>,\n  key: T,\n  methodNameInError: string = \"readMetadataJsonOrThrow\",\n): z.infer<MetadataJson<M>[T]> | undefined {\n  const json = readMetadata<M, T>(metadata, key);\n  if (json === undefined) return undefined;\n\n  const schema = metadataJson[key];\n  try {\n    const value = JSON.parse(json);\n    return schema.parse(value);\n  } catch (error: unknown) {\n    throw new Error(\n      `${methodNameInError} failed, ` +\n        `key: ${String(key)}, ` +\n        `value: ${json}, ` +\n        `error: ${ensureError(error)}`,\n    );\n  }\n}\n\nexport function readMetadataJson<M extends Metadata, T extends keyof MetadataJson<M>>(\n  metadata: Metadata | undefined,\n  metadataJson: MetadataJson<M>,\n  key: T,\n): z.infer<MetadataJson<M>[T]> | undefined {\n  try {\n    return readMetadataJsonOrThrow(metadata, metadataJson, key);\n  } catch {\n    return undefined; // treat invalid values as unset\n  }\n}\n\n/// Well-known domains\nexport const Domain = {\n  Alphabet: \"pl7.app/alphabet\",\n  BlockId: \"pl7.app/blockId\",\n  VDJ: {\n    Clustering: {\n      BlockId: \"pl7.app/vdj/clustering/blockId\",\n    },\n    ScClonotypeChain: {\n      Index: \"pl7.app/vdj/scClonotypeChain/index\",\n    },\n  },\n} as const;\n\nexport type Domain = Metadata &\n  Partial<{\n    [Domain.Alphabet]: \"nucleotide\" | \"aminoacid\" | (string & {});\n    [Domain.BlockId]: string;\n    [Domain.VDJ.ScClonotypeChain.Index]: \"primary\" | \"secondary\" | (string & {});\n  }>;\n\nexport type DomainJson = MetadataJson<Domain>;\nexport const DomainJson: DomainJson = {};\n\n/// Helper function for reading plain domain values\nexport function readDomain<T extends keyof Domain>(\n  spec: { domain?: Metadata | undefined } | undefined,\n  key: T,\n): Domain[T] | undefined {\n  return readMetadata<Domain, T>(spec?.domain, key);\n}\n\n/// Helper function for reading json-encoded domain values, throws on JSON parsing error\nexport function readDomainJsonOrThrow<T extends keyof DomainJson>(\n  spec: { domain?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<DomainJson[T]> | undefined {\n  return readMetadataJsonOrThrow<Domain, T>(spec?.domain, DomainJson, key, \"readDomainJsonOrThrow\");\n}\n\n/// Helper function for reading json-encoded domain values, returns undefined on JSON parsing error\nexport function readDomainJson<T extends keyof DomainJson>(\n  spec: { domain?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<DomainJson[T]> | undefined {\n  return readMetadataJson<Domain, T>(spec?.domain, DomainJson, key);\n}\n\n/// Well-known annotations\nexport const Annotation = {\n  AxisNature: \"pl7.app/axisNature\",\n  Alphabet: \"pl7.app/alphabet\",\n  Description: \"pl7.app/description\",\n  DiscreteValues: \"pl7.app/discreteValues\",\n  Format: \"pl7.app/format\",\n  Graph: {\n    Axis: {\n      HighCardinality: \"pl7.app/graph/axis/highCardinality\",\n      LowerLimit: \"pl7.app/graph/axis/lowerLimit\",\n      SymmetricRange: \"pl7.app/graph/axis/symmetricRange\",\n      UpperLimit: \"pl7.app/graph/axis/upperLimit\",\n    },\n    IsDenseAxis: \"pl7.app/graph/isDenseAxis\",\n    IsVirtual: \"pl7.app/graph/isVirtual\",\n    Palette: \"pl7.app/graph/palette\",\n    Thresholds: \"pl7.app/graph/thresholds\",\n    TreatAbsentValuesAs: \"pl7.app/graph/treatAbsentValuesAs\",\n  },\n  HideDataFromUi: \"pl7.app/hideDataFromUi\",\n  HideDataFromGraphs: \"pl7.app/hideDataFromGraphs\",\n  IsDiscreteFilter: \"pl7.app/isDiscreteFilter\",\n  IsAnchor: \"pl7.app/isAnchor\",\n  IsLinkerColumn: \"pl7.app/isLinkerColumn\",\n  IsScore: \"pl7.app/isScore\",\n  IsSubset: \"pl7.app/isSubset\",\n  Label: \"pl7.app/label\",\n  Max: \"pl7.app/max\",\n  Min: \"pl7.app/min\",\n  MultipliesBy: \"pl7.app/multipliesBy\",\n  Parents: \"pl7.app/parents\",\n  Score: {\n    DefaultCutoff: \"pl7.app/score/defaultCutoff\",\n    RankingOrder: \"pl7.app/score/rankingOrder\",\n  },\n  Sequence: {\n    Annotation: {\n      Mapping: \"pl7.app/sequence/annotation/mapping\",\n    },\n    IsAnnotation: \"pl7.app/sequence/isAnnotation\",\n  },\n  Table: {\n    FontFamily: \"pl7.app/table/fontFamily\",\n    OrderPriority: \"pl7.app/table/orderPriority\",\n    Visibility: \"pl7.app/table/visibility\",\n  },\n  Trace: \"pl7.app/trace\",\n  VDJ: {\n    IsAssemblingFeature: \"pl7.app/vdj/isAssemblingFeature\",\n    IsMainSequence: \"pl7.app/vdj/isMainSequence\",\n  },\n} as const;\n\nexport type Annotation = Metadata &\n  Partial<{\n    [Annotation.Alphabet]: \"nucleotide\" | \"aminoacid\" | (string & {});\n    [Annotation.AxisNature]: \"homogeneous\" | \"heterogeneous\" | \"scaleCompatible\" | (string & {});\n    [Annotation.Description]: string;\n    [Annotation.DiscreteValues]: StringifiedJson<number[]> | StringifiedJson<string[]>;\n    [Annotation.Format]: string;\n    [Annotation.Graph.Axis.HighCardinality]: StringifiedJson<boolean>;\n    [Annotation.Graph.Axis.LowerLimit]: StringifiedJson<number>;\n    [Annotation.Graph.Axis.SymmetricRange]: StringifiedJson<boolean>;\n    [Annotation.Graph.Axis.UpperLimit]: StringifiedJson<number>;\n    [Annotation.Graph.IsDenseAxis]: StringifiedJson<boolean>;\n    [Annotation.Graph.IsVirtual]: StringifiedJson<boolean>;\n    [Annotation.Graph.Palette]: StringifiedJson<{ mapping: Record<string, number>; name: string }>;\n    [Annotation.Graph.Thresholds]: StringifiedJson<\n      { columnId: { valueType: ValueType; name: string }; value: number }[]\n    >;\n    [Annotation.Graph.TreatAbsentValuesAs]: StringifiedJson<number>;\n    [Annotation.HideDataFromGraphs]: StringifiedJson<boolean>;\n    [Annotation.HideDataFromUi]: StringifiedJson<boolean>;\n    [Annotation.IsDiscreteFilter]: StringifiedJson<boolean>;\n    [Annotation.IsLinkerColumn]: StringifiedJson<boolean>;\n    [Annotation.IsSubset]: StringifiedJson<boolean>;\n    [Annotation.Label]: string;\n    [Annotation.Max]: StringifiedJson<number>;\n    [Annotation.Min]: StringifiedJson<number>;\n    [Annotation.MultipliesBy]: StringifiedJson<AxisSpec[\"name\"][]>;\n    [Annotation.Parents]: StringifiedJson<AxisSpec[\"name\"][]>;\n    [Annotation.Sequence.Annotation.Mapping]: StringifiedJson<Record<string, string>>;\n    [Annotation.Sequence.IsAnnotation]: StringifiedJson<boolean>;\n    [Annotation.Table.FontFamily]: string;\n    [Annotation.Table.OrderPriority]: StringifiedJson<number>;\n    [Annotation.Table.Visibility]: \"hidden\" | \"optional\" | (string & {});\n    [Annotation.Trace]: StringifiedJson<Record<string, unknown>>;\n    [Annotation.VDJ.IsAssemblingFeature]: StringifiedJson<boolean>;\n  }>;\n\n// export const AxisSpec = z.object({\n//   type: z.nativeEnum(ValueType),\n//   name: z.string(),\n//   domain: z.record(z.string(), z.string()).optional(),\n//   annotations: z.record(z.string(), z.string()).optional(),\n//   parentAxes: z.array(z.number()).optional(),\n// }).passthrough();\n//\n// type Expect<T extends true> = T;\n// type Equal<X, Y> =\n// (<T>() => T extends X ? 1 : 2) extends (<T>() => T extends Y ? 1 : 2) ? true : false;\n//\n// type _test = Expect<Equal<\n//   Readonly<z.infer<typeof AxisSpec>>,\n//   Readonly<AxisSpec & Record<string, unknown>>\n// >>;\n\nexport type AnnotationJson = MetadataJson<Annotation>;\n\nconst ValueTypeSchema = z.enum([\"Int\", \"Long\", \"Float\", \"Double\", \"String\"] as const);\nexport const AnnotationJson: AnnotationJson = {\n  [Annotation.DiscreteValues]: z.array(z.string()).or(z.array(z.number())),\n  [Annotation.Graph.Axis.HighCardinality]: z.boolean(),\n  [Annotation.Graph.Axis.LowerLimit]: z.number(),\n  [Annotation.Graph.Axis.UpperLimit]: z.number(),\n  [Annotation.Graph.Axis.SymmetricRange]: z.boolean(),\n  [Annotation.Graph.IsDenseAxis]: z.boolean(),\n  [Annotation.Graph.Palette]: z.object({ mapping: z.record(z.number()), name: z.string() }),\n  [Annotation.Graph.Thresholds]: z.array(\n    z.object({\n      columnId: z.object({ valueType: ValueTypeSchema, name: z.string() }),\n      value: z.number(),\n    }),\n  ),\n  [Annotation.Graph.TreatAbsentValuesAs]: z.number(),\n  [Annotation.Graph.IsVirtual]: z.boolean(),\n  [Annotation.HideDataFromUi]: z.boolean(),\n  [Annotation.HideDataFromGraphs]: z.boolean(),\n  [Annotation.IsDiscreteFilter]: z.boolean(),\n  [Annotation.IsLinkerColumn]: z.boolean(),\n  [Annotation.IsSubset]: z.boolean(),\n  [Annotation.Max]: z.number(),\n  [Annotation.Min]: z.number(),\n  [Annotation.MultipliesBy]: z.array(z.string()),\n  [Annotation.Parents]: z.array(z.string()),\n  [Annotation.Sequence.Annotation.Mapping]: z.record(z.string(), z.string()),\n  [Annotation.Sequence.IsAnnotation]: z.boolean(),\n  [Annotation.Table.OrderPriority]: z.number(),\n  [Annotation.Trace]: z.record(z.string(), z.unknown()),\n  [Annotation.VDJ.IsAssemblingFeature]: z.boolean(),\n};\n\n/// Helper function for reading plain annotation values\nexport function readAnnotation<T extends keyof Annotation>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): Annotation[T] | undefined {\n  return readMetadata<Annotation, T>(spec?.annotations, key);\n}\n\n/// Helper function for reading json-encoded annotation values, throws on JSON parsing error\nexport function readAnnotationJsonOrThrow<T extends keyof AnnotationJson>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<AnnotationJson[T]> | undefined {\n  return readMetadataJsonOrThrow<Annotation, T>(\n    spec?.annotations,\n    AnnotationJson,\n    key,\n    \"readAnnotationJsonOrThrow\",\n  );\n}\n\n/// Helper function for reading json-encoded annotation values, returns undefined on JSON parsing error\nexport function readAnnotationJson<T extends keyof AnnotationJson>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<AnnotationJson[T]> | undefined {\n  return readMetadataJson<Annotation, T>(spec?.annotations, AnnotationJson, key);\n}\n\nexport function isLinkerColumn(column: PColumnSpec): boolean {\n  return !!readAnnotationJson(column, Annotation.IsLinkerColumn);\n}\n\n/**\n * Specification of an individual axis.\n *\n * Each axis is a part of a composite key that addresses data inside the PColumn.\n *\n * Each record inside a PColumn is addressed by a unique tuple of values set for\n * all the axes specified in the column spec.\n */\nexport type AxisSpec = {\n  /** Type of the axis value. Should not use non-key types like float or double. */\n  readonly type: ValueType;\n\n  /** Name of the axis */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** Any additional information attached to the axis that does not affect its\n   * identifier */\n  readonly annotations?: Record<string, string>;\n\n  /**\n   * Parent axes provide contextual grouping for the axis in question, establishing\n   * a hierarchy where the current axis is dependent on one or more axes for its\n   * full definition and meaning. For instance, in a data structure where each\n   * \"container\" axis may contain multiple \"item\" axes, the `item` axis would\n   * list the index of the `container` axis in this field to denote its dependency.\n   *\n   * This means that the identity or significance of the `item` axis is only\n   * interpretable when combined with its parent `container` axis. An `item` axis\n   * index by itself may be non-unique and only gains uniqueness within the context\n   * of its parent `container`. Therefore, the `parentAxes` field is essential for\n   * mapping these relationships and ensuring data coherence across nested or\n   * multi-level data models.\n   *\n   * A list of zero-based indices of parent axes in the overall axes specification\n   * from the column spec. Each index corresponds to the position of a parent axis\n   * in the list that defines the structure of the data model.\n   */\n  readonly parentAxes?: number[];\n};\n\n/** Parents are specs, not indexes; normalized axis can be used considering its parents independently from column */\nexport interface AxisSpecNormalized extends Omit<AxisSpec, \"parentAxes\"> {\n  parentAxesSpec: AxisSpecNormalized[];\n}\n\n/** Tree: axis is a root, its parents are children */\nexport type AxisTree = {\n  axis: AxisSpecNormalized;\n  children: AxisTree[]; // parents\n};\n\nfunction makeAxisTree(axis: AxisSpecNormalized): AxisTree {\n  return { axis, children: [] };\n}\n\n/** Build tree by axis parents annotations */\nexport function getAxesTree(rootAxis: AxisSpecNormalized): AxisTree {\n  const root = makeAxisTree(rootAxis);\n  let nodesQ = [root];\n  while (nodesQ.length) {\n    const nextNodes: AxisTree[] = [];\n    for (const node of nodesQ) {\n      node.children = node.axis.parentAxesSpec.map(makeAxisTree);\n      nextNodes.push(...node.children);\n    }\n    nodesQ = nextNodes;\n  }\n  return root;\n}\n\n/** Get set of canonicalized axisIds from axisTree */\nexport function getSetFromAxisTree(tree: AxisTree): Set<CanonicalizedJson<AxisId>> {\n  const set = new Set([canonicalizeJson(getAxisId(tree.axis))]);\n  let nodesQ = [tree];\n  while (nodesQ.length) {\n    const nextNodes = [];\n    for (const node of nodesQ) {\n      for (const parent of node.children) {\n        set.add(canonicalizeJson(getAxisId(parent.axis)));\n        nextNodes.push(parent);\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return set;\n}\n\n/** Get array of axisSpecs from axisTree */\nexport function getArrayFromAxisTree(tree: AxisTree): AxisSpecNormalized[] {\n  const res = [tree.axis];\n  let nodesQ = [tree];\n  while (nodesQ.length) {\n    const nextNodes = [];\n    for (const node of nodesQ) {\n      for (const parent of node.children) {\n        res.push(parent.axis);\n        nextNodes.push(parent);\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return res;\n}\n\nexport function canonicalizeAxisWithParents(axis: AxisSpecNormalized) {\n  return canonicalizeJson(getArrayFromAxisTree(getAxesTree(axis)).map(getAxisId));\n}\n\nfunction normalizingAxesComparator(\n  axis1: AxisSpecNormalized,\n  axis2: AxisSpecNormalized,\n): 1 | -1 | 0 {\n  if (axis1.name !== axis2.name) {\n    return axis1.name < axis2.name ? 1 : -1;\n  }\n  if (axis1.type !== axis2.type) {\n    return axis1.type < axis2.type ? 1 : -1;\n  }\n  const domain1 = canonicalizeJson(axis1.domain ?? {});\n  const domain2 = canonicalizeJson(axis2.domain ?? {});\n  if (domain1 !== domain2) {\n    return domain1 < domain2 ? 1 : -1;\n  }\n\n  const parents1 = canonicalizeAxisWithParents(axis1);\n  const parents2 = canonicalizeAxisWithParents(axis2);\n\n  if (parents1 !== parents2) {\n    return parents1 < parents2 ? 1 : -1;\n  }\n\n  const annotation1 = canonicalizeJson(axis1.annotations ?? {});\n  const annotation2 = canonicalizeJson(axis2.annotations ?? {});\n  if (annotation1 !== annotation2) {\n    return annotation1 < annotation2 ? 1 : -1;\n  }\n  return 0;\n}\n\nfunction parseParentsFromAnnotations(axis: AxisSpec) {\n  const parentsList = readAnnotationJson(axis, Annotation.Parents);\n  if (parentsList === undefined) {\n    return [];\n  }\n  return parentsList;\n}\n\nfunction sortParentsDeep(axisSpec: AxisSpecNormalized) {\n  axisSpec.parentAxesSpec.forEach(sortParentsDeep);\n  axisSpec.parentAxesSpec.sort(normalizingAxesComparator);\n}\n\nfunction hasCycleOfParents(axisSpec: AxisSpecNormalized) {\n  const root = makeAxisTree(axisSpec);\n  let nodesQ = [root];\n  const ancestors = new Set(canonicalizeJson(getAxisId(axisSpec)));\n  while (nodesQ.length) {\n    const nextNodes: AxisTree[] = [];\n    const levelIds = new Set<CanonicalizedJson<AxisId>>();\n    for (const node of nodesQ) {\n      node.children = node.axis.parentAxesSpec.map(makeAxisTree);\n      for (const child of node.children) {\n        const childId = canonicalizeJson(getAxisId(child.axis));\n        if (!levelIds.has(childId)) {\n          nextNodes.push(child);\n          levelIds.add(childId);\n          if (ancestors.has(childId)) {\n            return true;\n          }\n          ancestors.add(childId);\n        }\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return false;\n}\n\n/** Create list of normalized axisSpec (parents are in array of specs, not indexes) */\nexport function getNormalizedAxesList(axes: AxisSpec[]): AxisSpecNormalized[] {\n  if (!axes.length) {\n    return [];\n  }\n  const modifiedAxes: AxisSpecNormalized[] = axes.map((axis) => {\n    const { parentAxes: _, ...copiedRest } = axis;\n    return { ...copiedRest, annotations: { ...copiedRest.annotations }, parentAxesSpec: [] };\n  });\n\n  axes.forEach((axis, idx) => {\n    const modifiedAxis = modifiedAxes[idx];\n    if (axis.parentAxes) {\n      // if we have parents by indexes then take from the list\n      modifiedAxis.parentAxesSpec = axis.parentAxes.map((idx) => modifiedAxes[idx]);\n    } else {\n      // else try to parse from annotation name\n      const parents = parseParentsFromAnnotations(axis).map((name) =>\n        modifiedAxes.find((axis) => axis.name === name),\n      );\n      modifiedAxis.parentAxesSpec = parents.some((p) => p === undefined)\n        ? []\n        : (parents as AxisSpecNormalized[]);\n\n      delete modifiedAxis.annotations?.[Annotation.Parents];\n    }\n  });\n\n  if (modifiedAxes.some(hasCycleOfParents)) {\n    // Axes list is broken\n    modifiedAxes.forEach((axis) => {\n      axis.parentAxesSpec = [];\n    });\n  } else {\n    modifiedAxes.forEach((axis) => {\n      sortParentsDeep(axis);\n    });\n  }\n\n  return modifiedAxes;\n}\n\n/** Create list of regular axisSpec from normalized (parents are indexes, inside of current axes list) */\nexport function getDenormalizedAxesList(axesSpec: AxisSpecNormalized[]): AxisSpec[] {\n  const idsList = axesSpec.map((axisSpec) => canonicalizeJson(getAxisId(axisSpec)));\n  return axesSpec.map((axisSpec) => {\n    const parentsIds = axisSpec.parentAxesSpec.map((axisSpec) =>\n      canonicalizeJson(getAxisId(axisSpec)),\n    );\n    const parentIdxs = parentsIds.map((id) => idsList.indexOf(id));\n    const { parentAxesSpec: _, ...copiedRest } = axisSpec;\n    if (parentIdxs.length) {\n      return { ...copiedRest, parentAxes: parentIdxs } as AxisSpec;\n    }\n    return copiedRest;\n  });\n}\n\n/** Common type representing spec for all the axes in a column */\nexport type AxesSpec = AxisSpec[];\n\n/// Well-known column names\nexport const PColumnName = {\n  Label: \"pl7.app/label\",\n  Table: {\n    RowSelection: \"pl7.app/table/row-selection\",\n  },\n  VDJ: {\n    LeadSelection: \"pl7.app/vdj/lead-selection\",\n    RankingOrder: \"pl7.app/vdj/ranking-order\",\n    Sequence: \"pl7.app/vdj/sequence\",\n  },\n} as const;\n\n/// Well-known axis names\nexport const PAxisName = {\n  SampleId: \"pl7.app/sampleId\",\n  VDJ: {\n    Assay: {\n      SequenceId: \"pl7.app/vdj/assay/sequenceId\",\n    },\n    ClusterId: \"pl7.app/vdj/clusterId\",\n    ClonotypeKey: \"pl7.app/vdj/clonotypeKey\",\n    ScClonotypeKey: \"pl7.app/vdj/scClonotypeKey\",\n  },\n} as const;\n\nexport function isLabelColumn(column: PColumnSpec) {\n  return column.axesSpec.length === 1 && column.name === PColumnName.Label;\n}\n\n/**\n * Full column specification including all axes specs and specs of the column\n * itself.\n *\n * A PColumn in its essence represents a mapping from a fixed size, explicitly\n * typed tuple to an explicitly typed value.\n *\n * (axis1Value1, axis2Value1, ...) -> columnValue\n *\n * Each element in tuple correspond to the axis having the same index in axesSpec.\n */\nexport type PUniversalColumnSpec = PObjectSpec & {\n  /** Defines specific type of BObject, the most generic type of unit of\n   * information in Platforma Project. */\n  readonly kind: \"PColumn\";\n\n  /** Type of column values */\n  readonly valueType: string;\n\n  /** Column name */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** Any additional information attached to the column that does not affect its\n   * identifier */\n  readonly annotations?: Record<string, string>;\n\n  /** A list of zero-based indices of parent axes from the {@link axesSpec} array. */\n  readonly parentAxes?: number[];\n\n  /** Axes specifications */\n  readonly axesSpec: AxesSpec;\n};\n\n/**\n * Specification of a data column.\n *\n * Data column is a specialized type of PColumn that stores only simple values (strings and numbers)\n * addressed by multiple keys. This is in contrast to other PColumn variants that can store more complex\n * values like files or other abstract data types. Data columns are optimized for storing and processing\n * basic tabular data.\n */\nexport type PDataColumnSpec = PUniversalColumnSpec & {\n  /** Type of column values */\n  readonly valueType: ValueType;\n};\n\n// @todo: change this to PUniversalColumnSpec\nexport type PColumnSpec = PDataColumnSpec;\n\n/** Unique PColumnSpec identifier */\nexport type PColumnSpecId = {\n  /** Defines specific type of BObject, the most generic type of unit of\n   * information in Platforma Project. */\n  readonly kind: \"PColumn\";\n\n  /** Type of column values */\n  readonly valueType: ValueType;\n\n  /** Column name */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** A list of zero-based indices of parent axes from the {@link axesSpec} array. */\n  readonly parentAxes?: number[];\n\n  /** Axes id */\n  readonly axesId: AxesId;\n};\n\nexport function getPColumnSpecId(spec: PColumnSpec): PColumnSpecId {\n  return {\n    kind: spec.kind,\n    valueType: spec.valueType,\n    name: spec.name,\n    domain: spec.domain,\n    parentAxes: spec.parentAxes,\n    axesId: getAxesId(spec.axesSpec),\n  };\n}\n\nexport interface PColumn<Data> extends PObject<Data> {\n  /** PColumn spec, allowing it to be found among other PObjects */\n  readonly spec: PColumnSpec;\n}\n\nexport type PColumnLazy<T> = PColumn<() => T>;\n\n/** Columns in a PFrame also have internal identifier, this object represents\n * combination of specs and such id */\nexport interface PColumnIdAndSpec {\n  /** Internal column id within the PFrame */\n  readonly columnId: PObjectId;\n\n  /** Column spec */\n  readonly spec: PColumnSpec;\n}\n\n/** Get column id and spec from a column */\nexport function getColumnIdAndSpec<Data>(column: PColumn<Data>): PColumnIdAndSpec {\n  return {\n    columnId: column.id,\n    spec: column.spec,\n  };\n}\n\n/** Information returned by {@link PFrame.listColumns} method */\nexport interface PColumnInfo extends PColumnIdAndSpec {\n  /** True if data was associated with this PColumn */\n  readonly hasData: boolean;\n}\n\nexport interface AxisId {\n  /** Type of the axis or column value. For an axis should not use non-key\n   * types like float or double. */\n  readonly type: ValueType;\n\n  /** Name of the axis or column */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis or column name and type to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n}\n\n/** Array of axis ids */\nexport type AxesId = AxisId[];\n\n/** Extracts axis ids from axis spec */\nexport function getAxisId(spec: AxisSpec): AxisId {\n  const { type, name, domain } = spec;\n  const result = { type, name };\n  if (domain && Object.entries(domain).length > 0) {\n    Object.assign(result, { domain });\n  }\n  return result;\n}\n\n/** Extracts axes ids from axes spec array from column spec */\nexport function getAxesId(spec: AxesSpec): AxesId {\n  return spec.map(getAxisId);\n}\n\n/** Canonicalizes axis id */\nexport function canonicalizeAxisId(id: AxisId): CanonicalizedJson<AxisId> {\n  return canonicalizeJson(getAxisId(id));\n}\n\n/** Returns true if all domains from query are found in target */\nfunction matchDomain(query?: Record<string, string>, target?: Record<string, string>) {\n  if (query === undefined) return target === undefined;\n  if (target === undefined) return true;\n  for (const k in target) {\n    if (query[k] !== target[k]) return false;\n  }\n  return true;\n}\n\n/** Returns whether \"match\" axis id is compatible with the \"query\" */\nexport function matchAxisId(query: AxisId, target: AxisId): boolean {\n  return query.name === target.name && matchDomain(query.domain, target.domain);\n}\n\nexport function getTypeFromPColumnOrAxisSpec(spec: PColumnSpec | AxisSpec): ValueType {\n  return \"valueType\" in spec ? spec.valueType : spec.type;\n}\n\nexport function isAxisId(id: unknown): id is AxisId {\n  return typeof id === \"object\" && id !== null && \"name\" in id && \"type\" in 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\"pl7.app/max\",\n  Min: \"pl7.app/min\",\n  MultipliesBy: \"pl7.app/multipliesBy\",\n  Parents: \"pl7.app/parents\",\n  Score: {\n    DefaultCutoff: \"pl7.app/score/defaultCutoff\",\n    RankingOrder: \"pl7.app/score/rankingOrder\",\n  },\n  Sequence: {\n    Annotation: {\n      Mapping: \"pl7.app/sequence/annotation/mapping\",\n    },\n    IsAnnotation: \"pl7.app/sequence/isAnnotation\",\n  },\n  Table: {\n    FontFamily: \"pl7.app/table/fontFamily\",\n    OrderPriority: \"pl7.app/table/orderPriority\",\n    Visibility: \"pl7.app/table/visibility\",\n  },\n  Trace: \"pl7.app/trace\",\n  VDJ: {\n    IsAssemblingFeature: \"pl7.app/vdj/isAssemblingFeature\",\n    IsMainSequence: \"pl7.app/vdj/isMainSequence\",\n  },\n} as const;\n\nexport type Annotation = Metadata &\n  Partial<{\n    [Annotation.Alphabet]: \"nucleotide\" | \"aminoacid\" | (string & {});\n    [Annotation.AxisNature]: \"homogeneous\" | \"heterogeneous\" | \"scaleCompatible\" | (string & {});\n    [Annotation.Description]: string;\n    [Annotation.DiscreteValues]: StringifiedJson<number[]> | StringifiedJson<string[]>;\n    [Annotation.Format]: string;\n    [Annotation.Graph.Axis.HighCardinality]: StringifiedJson<boolean>;\n    [Annotation.Graph.Axis.LowerLimit]: StringifiedJson<number>;\n    [Annotation.Graph.Axis.SymmetricRange]: StringifiedJson<boolean>;\n    [Annotation.Graph.Axis.UpperLimit]: StringifiedJson<number>;\n    [Annotation.Graph.IsDenseAxis]: StringifiedJson<boolean>;\n    [Annotation.Graph.IsVirtual]: StringifiedJson<boolean>;\n    [Annotation.Graph.Palette]: StringifiedJson<{ mapping: Record<string, number>; name: string }>;\n    [Annotation.Graph.Thresholds]: StringifiedJson<\n      { columnId: { valueType: ValueType; name: string }; value: number }[]\n    >;\n    [Annotation.Graph.TreatAbsentValuesAs]: StringifiedJson<number>;\n    [Annotation.HideDataFromGraphs]: StringifiedJson<boolean>;\n    [Annotation.HideDataFromUi]: StringifiedJson<boolean>;\n    [Annotation.IsDiscreteFilter]: StringifiedJson<boolean>;\n    [Annotation.IsLinkerColumn]: StringifiedJson<boolean>;\n    [Annotation.IsSubset]: StringifiedJson<boolean>;\n    [Annotation.Label]: string;\n    [Annotation.Max]: StringifiedJson<number>;\n    [Annotation.Min]: StringifiedJson<number>;\n    [Annotation.MultipliesBy]: StringifiedJson<AxisSpec[\"name\"][]>;\n    [Annotation.Parents]: StringifiedJson<AxisSpec[\"name\"][]>;\n    [Annotation.Sequence.Annotation.Mapping]: StringifiedJson<Record<string, string>>;\n    [Annotation.Sequence.IsAnnotation]: StringifiedJson<boolean>;\n    [Annotation.Table.FontFamily]: string;\n    [Annotation.Table.OrderPriority]: StringifiedJson<number>;\n    [Annotation.Table.Visibility]: \"hidden\" | \"optional\" | (string & {});\n    [Annotation.Trace]: StringifiedJson<Record<string, unknown>>;\n    [Annotation.VDJ.IsAssemblingFeature]: StringifiedJson<boolean>;\n  }>;\n\n// export const AxisSpec = z.object({\n//   type: z.nativeEnum(ValueType),\n//   name: z.string(),\n//   domain: z.record(z.string(), z.string()).optional(),\n//   annotations: z.record(z.string(), z.string()).optional(),\n//   parentAxes: z.array(z.number()).optional(),\n// }).passthrough();\n//\n// type Expect<T extends true> = T;\n// type Equal<X, Y> =\n// (<T>() => T extends X ? 1 : 2) extends (<T>() => T extends Y ? 1 : 2) ? true : false;\n//\n// type _test = Expect<Equal<\n//   Readonly<z.infer<typeof AxisSpec>>,\n//   Readonly<AxisSpec & Record<string, unknown>>\n// >>;\n\nexport type AnnotationJson = MetadataJson<Annotation>;\n\nconst ValueTypeSchema = z.enum([\"Int\", \"Long\", \"Float\", \"Double\", \"String\"] as const);\nexport const AnnotationJson: AnnotationJson = {\n  [Annotation.DiscreteValues]: z.array(z.string()).or(z.array(z.number())),\n  [Annotation.Graph.Axis.HighCardinality]: z.boolean(),\n  [Annotation.Graph.Axis.LowerLimit]: z.number(),\n  [Annotation.Graph.Axis.UpperLimit]: z.number(),\n  [Annotation.Graph.Axis.SymmetricRange]: z.boolean(),\n  [Annotation.Graph.IsDenseAxis]: z.boolean(),\n  [Annotation.Graph.Palette]: z.object({ mapping: z.record(z.number()), name: z.string() }),\n  [Annotation.Graph.Thresholds]: z.array(\n    z.object({\n      columnId: z.object({ valueType: ValueTypeSchema, name: z.string() }),\n      value: z.number(),\n    }),\n  ),\n  [Annotation.Graph.TreatAbsentValuesAs]: z.number(),\n  [Annotation.Graph.IsVirtual]: z.boolean(),\n  [Annotation.HideDataFromUi]: z.boolean(),\n  [Annotation.HideDataFromGraphs]: z.boolean(),\n  [Annotation.IsDiscreteFilter]: z.boolean(),\n  [Annotation.IsLinkerColumn]: z.boolean(),\n  [Annotation.IsSubset]: z.boolean(),\n  [Annotation.Max]: z.number(),\n  [Annotation.Min]: z.number(),\n  [Annotation.MultipliesBy]: z.array(z.string()),\n  [Annotation.Parents]: z.array(z.string()),\n  [Annotation.Sequence.Annotation.Mapping]: z.record(z.string(), z.string()),\n  [Annotation.Sequence.IsAnnotation]: z.boolean(),\n  [Annotation.Table.OrderPriority]: z.number(),\n  [Annotation.Trace]: z.record(z.string(), z.unknown()),\n  [Annotation.VDJ.IsAssemblingFeature]: z.boolean(),\n};\n\n/// Helper function for reading plain annotation values\nexport function readAnnotation<T extends keyof Annotation>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): Annotation[T] | undefined {\n  return readMetadata<Annotation, T>(spec?.annotations, key);\n}\n\n/// Helper function for reading json-encoded annotation values, throws on JSON parsing error\nexport function readAnnotationJsonOrThrow<T extends keyof AnnotationJson>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<AnnotationJson[T]> | undefined {\n  return readMetadataJsonOrThrow<Annotation, T>(\n    spec?.annotations,\n    AnnotationJson,\n    key,\n    \"readAnnotationJsonOrThrow\",\n  );\n}\n\n/// Helper function for reading json-encoded annotation values, returns undefined on JSON parsing error\nexport function readAnnotationJson<T extends keyof AnnotationJson>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<AnnotationJson[T]> | undefined {\n  return readMetadataJson<Annotation, T>(spec?.annotations, AnnotationJson, key);\n}\n\nexport function isLinkerColumn(column: PColumnSpec): boolean {\n  return !!readAnnotationJson(column, Annotation.IsLinkerColumn);\n}\n\n/**\n * Specification of an individual axis.\n *\n * Each axis is a part of a composite key that addresses data inside the PColumn.\n *\n * Each record inside a PColumn is addressed by a unique tuple of values set for\n * all the axes specified in the column spec.\n */\nexport type AxisSpec = {\n  /** Type of the axis value. Should not use non-key types like float or double. */\n  readonly type: ValueType;\n\n  /** Name of the axis */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** Context domain provides additional axis identity that is matched\n   * by kinship rules (subset/superset/overlap) rather than exact equality */\n  readonly contextDomain?: Record<string, string>;\n\n  /** Any additional information attached to the axis that does not affect its\n   * identifier */\n  readonly annotations?: Record<string, string>;\n\n  /**\n   * Parent axes provide contextual grouping for the axis in question, establishing\n   * a hierarchy where the current axis is dependent on one or more axes for its\n   * full definition and meaning. For instance, in a data structure where each\n   * \"container\" axis may contain multiple \"item\" axes, the `item` axis would\n   * list the index of the `container` axis in this field to denote its dependency.\n   *\n   * This means that the identity or significance of the `item` axis is only\n   * interpretable when combined with its parent `container` axis. An `item` axis\n   * index by itself may be non-unique and only gains uniqueness within the context\n   * of its parent `container`. Therefore, the `parentAxes` field is essential for\n   * mapping these relationships and ensuring data coherence across nested or\n   * multi-level data models.\n   *\n   * A list of zero-based indices of parent axes in the overall axes specification\n   * from the column spec. Each index corresponds to the position of a parent axis\n   * in the list that defines the structure of the data model.\n   */\n  readonly parentAxes?: number[];\n};\n\n/** Parents are specs, not indexes; normalized axis can be used considering its parents independently from column */\nexport interface AxisSpecNormalized extends Omit<AxisSpec, \"parentAxes\"> {\n  parentAxesSpec: AxisSpecNormalized[];\n}\n\n/** Tree: axis is a root, its parents are children */\nexport type AxisTree = {\n  axis: AxisSpecNormalized;\n  children: AxisTree[]; // parents\n};\n\nfunction makeAxisTree(axis: AxisSpecNormalized): AxisTree {\n  return { axis, children: [] };\n}\n\n/** Build tree by axis parents annotations */\nexport function getAxesTree(rootAxis: AxisSpecNormalized): AxisTree {\n  const root = makeAxisTree(rootAxis);\n  let nodesQ = [root];\n  while (nodesQ.length) {\n    const nextNodes: AxisTree[] = [];\n    for (const node of nodesQ) {\n      node.children = node.axis.parentAxesSpec.map(makeAxisTree);\n      nextNodes.push(...node.children);\n    }\n    nodesQ = nextNodes;\n  }\n  return root;\n}\n\n/** Get set of canonicalized axisIds from axisTree */\nexport function getSetFromAxisTree(tree: AxisTree): Set<CanonicalizedJson<AxisId>> {\n  const set = new Set([canonicalizeJson(getAxisId(tree.axis))]);\n  let nodesQ = [tree];\n  while (nodesQ.length) {\n    const nextNodes = [];\n    for (const node of nodesQ) {\n      for (const parent of node.children) {\n        set.add(canonicalizeJson(getAxisId(parent.axis)));\n        nextNodes.push(parent);\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return set;\n}\n\n/** Get array of axisSpecs from axisTree */\nexport function getArrayFromAxisTree(tree: AxisTree): AxisSpecNormalized[] {\n  const res = [tree.axis];\n  let nodesQ = [tree];\n  while (nodesQ.length) {\n    const nextNodes = [];\n    for (const node of nodesQ) {\n      for (const parent of node.children) {\n        res.push(parent.axis);\n        nextNodes.push(parent);\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return res;\n}\n\nexport function canonicalizeAxisWithParents(axis: AxisSpecNormalized) {\n  return canonicalizeJson(getArrayFromAxisTree(getAxesTree(axis)).map(getAxisId));\n}\n\nfunction normalizingAxesComparator(\n  axis1: AxisSpecNormalized,\n  axis2: AxisSpecNormalized,\n): 1 | -1 | 0 {\n  if (axis1.name !== axis2.name) {\n    return axis1.name < axis2.name ? 1 : -1;\n  }\n  if (axis1.type !== axis2.type) {\n    return axis1.type < axis2.type ? 1 : -1;\n  }\n  const domain1 = canonicalizeJson(axis1.domain ?? {});\n  const domain2 = canonicalizeJson(axis2.domain ?? {});\n  if (domain1 !== domain2) {\n    return domain1 < domain2 ? 1 : -1;\n  }\n\n  const contextDomain1 = canonicalizeJson(axis1.contextDomain ?? {});\n  const contextDomain2 = canonicalizeJson(axis2.contextDomain ?? {});\n  if (contextDomain1 !== contextDomain2) {\n    return contextDomain1 < contextDomain2 ? 1 : -1;\n  }\n\n  const parents1 = canonicalizeAxisWithParents(axis1);\n  const parents2 = canonicalizeAxisWithParents(axis2);\n\n  if (parents1 !== parents2) {\n    return parents1 < parents2 ? 1 : -1;\n  }\n\n  const annotation1 = canonicalizeJson(axis1.annotations ?? {});\n  const annotation2 = canonicalizeJson(axis2.annotations ?? {});\n  if (annotation1 !== annotation2) {\n    return annotation1 < annotation2 ? 1 : -1;\n  }\n  return 0;\n}\n\nfunction parseParentsFromAnnotations(axis: AxisSpec) {\n  const parentsList = readAnnotationJson(axis, Annotation.Parents);\n  if (parentsList === undefined) {\n    return [];\n  }\n  return parentsList;\n}\n\nfunction sortParentsDeep(axisSpec: AxisSpecNormalized) {\n  axisSpec.parentAxesSpec.forEach(sortParentsDeep);\n  axisSpec.parentAxesSpec.sort(normalizingAxesComparator);\n}\n\nfunction hasCycleOfParents(axisSpec: AxisSpecNormalized) {\n  const root = makeAxisTree(axisSpec);\n  let nodesQ = [root];\n  const ancestors = new Set(canonicalizeJson(getAxisId(axisSpec)));\n  while (nodesQ.length) {\n    const nextNodes: AxisTree[] = [];\n    const levelIds = new Set<CanonicalizedJson<AxisId>>();\n    for (const node of nodesQ) {\n      node.children = node.axis.parentAxesSpec.map(makeAxisTree);\n      for (const child of node.children) {\n        const childId = canonicalizeJson(getAxisId(child.axis));\n        if (!levelIds.has(childId)) {\n          nextNodes.push(child);\n          levelIds.add(childId);\n          if (ancestors.has(childId)) {\n            return true;\n          }\n          ancestors.add(childId);\n        }\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return false;\n}\n\n/** Create list of normalized axisSpec (parents are in array of specs, not indexes) */\nexport function getNormalizedAxesList(axes: AxisSpec[]): AxisSpecNormalized[] {\n  if (!axes.length) {\n    return [];\n  }\n  const modifiedAxes: AxisSpecNormalized[] = axes.map((axis) => {\n    const { parentAxes: _, ...copiedRest } = axis;\n    return { ...copiedRest, annotations: { ...copiedRest.annotations }, parentAxesSpec: [] };\n  });\n\n  axes.forEach((axis, idx) => {\n    const modifiedAxis = modifiedAxes[idx];\n    if (axis.parentAxes) {\n      // if we have parents by indexes then take from the list\n      modifiedAxis.parentAxesSpec = axis.parentAxes.map((idx) => modifiedAxes[idx]);\n    } else {\n      // else try to parse from annotation name\n      const parents = parseParentsFromAnnotations(axis).map((name) =>\n        modifiedAxes.find((axis) => axis.name === name),\n      );\n      modifiedAxis.parentAxesSpec = parents.some((p) => p === undefined)\n        ? []\n        : (parents as AxisSpecNormalized[]);\n\n      delete modifiedAxis.annotations?.[Annotation.Parents];\n    }\n  });\n\n  if (modifiedAxes.some(hasCycleOfParents)) {\n    // Axes list is broken\n    modifiedAxes.forEach((axis) => {\n      axis.parentAxesSpec = [];\n    });\n  } else {\n    modifiedAxes.forEach((axis) => {\n      sortParentsDeep(axis);\n    });\n  }\n\n  return modifiedAxes;\n}\n\n/** Create list of regular axisSpec from normalized (parents are indexes, inside of current axes list) */\nexport function getDenormalizedAxesList(axesSpec: AxisSpecNormalized[]): AxisSpec[] {\n  const idsList = axesSpec.map((axisSpec) => canonicalizeJson(getAxisId(axisSpec)));\n  return axesSpec.map((axisSpec) => {\n    const parentsIds = axisSpec.parentAxesSpec.map((axisSpec) =>\n      canonicalizeJson(getAxisId(axisSpec)),\n    );\n    const parentIdxs = parentsIds.map((id) => idsList.indexOf(id));\n    const { parentAxesSpec: _, ...copiedRest } = axisSpec;\n    if (parentIdxs.length) {\n      return { ...copiedRest, parentAxes: parentIdxs } as AxisSpec;\n    }\n    return copiedRest;\n  });\n}\n\n/** Common type representing spec for all the axes in a column */\nexport type AxesSpec = AxisSpec[];\n\n/// Well-known column names\nexport const PColumnName = {\n  Label: \"pl7.app/label\",\n  Table: {\n    RowSelection: \"pl7.app/table/row-selection\",\n  },\n  VDJ: {\n    LeadSelection: \"pl7.app/vdj/lead-selection\",\n    RankingOrder: \"pl7.app/vdj/ranking-order\",\n    Sequence: \"pl7.app/vdj/sequence\",\n  },\n} as const;\n\n/// Well-known axis names\nexport const PAxisName = {\n  SampleId: \"pl7.app/sampleId\",\n  VDJ: {\n    Assay: {\n      SequenceId: \"pl7.app/vdj/assay/sequenceId\",\n    },\n    ClusterId: \"pl7.app/vdj/clusterId\",\n    ClonotypeKey: \"pl7.app/vdj/clonotypeKey\",\n    ScClonotypeKey: \"pl7.app/vdj/scClonotypeKey\",\n  },\n} as const;\n\nexport function isLabelColumn(column: PColumnSpec) {\n  return column.axesSpec.length === 1 && column.name === PColumnName.Label;\n}\n\n/**\n * Full column specification including all axes specs and specs of the column\n * itself.\n *\n * A PColumn in its essence represents a mapping from a fixed size, explicitly\n * typed tuple to an explicitly typed value.\n *\n * (axis1Value1, axis2Value1, ...) -> columnValue\n *\n * Each element in tuple correspond to the axis having the same index in axesSpec.\n */\nexport type PUniversalColumnSpec = PObjectSpec & {\n  /** Defines specific type of BObject, the most generic type of unit of\n   * information in Platforma Project. */\n  readonly kind: \"PColumn\";\n\n  /** Type of column values */\n  readonly valueType: string;\n\n  /** Column name */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** Context domain provides additional column identity that is matched\n   * by kinship rules (subset/superset/overlap) rather than exact equality */\n  readonly contextDomain?: Record<string, string>;\n\n  /** Any additional information attached to the column that does not affect its\n   * identifier */\n  readonly annotations?: Record<string, string>;\n\n  /** A list of zero-based indices of parent axes from the {@link axesSpec} array. */\n  readonly parentAxes?: number[];\n\n  /** Axes specifications */\n  readonly axesSpec: AxesSpec;\n};\n\n/**\n * Specification of a data column.\n *\n * Data column is a specialized type of PColumn that stores only simple values (strings and numbers)\n * addressed by multiple keys. This is in contrast to other PColumn variants that can store more complex\n * values like files or other abstract data types. Data columns are optimized for storing and processing\n * basic tabular data.\n */\nexport type PDataColumnSpec = PUniversalColumnSpec & {\n  /** Type of column values */\n  readonly valueType: ValueType;\n};\n\n// @todo: change this to PUniversalColumnSpec\nexport type PColumnSpec = PDataColumnSpec;\n\n/** Unique PColumnSpec identifier */\nexport type PColumnSpecId = {\n  /** Defines specific type of BObject, the most generic type of unit of\n   * information in Platforma Project. */\n  readonly kind: \"PColumn\";\n\n  /** Type of column values */\n  readonly valueType: ValueType;\n\n  /** Column name */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** Context domain provides additional column identity that is matched\n   * by kinship rules (subset/superset/overlap) rather than exact equality */\n  readonly contextDomain?: Record<string, string>;\n\n  /** A list of zero-based indices of parent axes from the {@link axesSpec} array. */\n  readonly parentAxes?: number[];\n\n  /** Axes id */\n  readonly axesId: AxesId;\n};\n\nexport function getPColumnSpecId(spec: PColumnSpec): PColumnSpecId {\n  return {\n    kind: spec.kind,\n    valueType: spec.valueType,\n    name: spec.name,\n    domain: spec.domain,\n    contextDomain: spec.contextDomain,\n    parentAxes: spec.parentAxes,\n    axesId: getAxesId(spec.axesSpec),\n  };\n}\n\nexport interface PColumn<Data> extends PObject<Data> {\n  /** PColumn spec, allowing it to be found among other PObjects */\n  readonly spec: PColumnSpec;\n}\n\nexport type PColumnLazy<T> = PColumn<() => T>;\n\n/** Columns in a PFrame also have internal identifier, this object represents\n * combination of specs and such id */\nexport interface PColumnIdAndSpec {\n  /** Internal column id within the PFrame */\n  readonly columnId: PObjectId;\n\n  /** Column spec */\n  readonly spec: PColumnSpec;\n}\n\n/** Get column id and spec from a column */\nexport function getColumnIdAndSpec<Data>(column: PColumn<Data>): PColumnIdAndSpec {\n  return {\n    columnId: column.id,\n    spec: column.spec,\n  };\n}\n\n/** Information returned by {@link PFrame.listColumns} method */\nexport interface PColumnInfo extends PColumnIdAndSpec {\n  /** True if data was associated with this PColumn */\n  readonly hasData: boolean;\n}\n\nexport interface AxisId {\n  /** Type of the axis or column value. For an axis should not use non-key\n   * types like float or double. */\n  readonly type: ValueType;\n\n  /** Name of the axis or column */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis or column name and type to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** Context domain provides additional axis identity that is matched\n   * by kinship rules (subset/superset/overlap) rather than exact equality */\n  readonly contextDomain?: Record<string, string>;\n}\n\n/** Array of axis ids */\nexport type AxesId = AxisId[];\n\n/** Extracts axis ids from axis spec */\nexport function getAxisId(spec: AxisSpec): AxisId {\n  const { type, name, domain, contextDomain } = spec;\n  const result: AxisId = { type, name };\n  if (domain && Object.entries(domain).length > 0) {\n    Object.assign(result, { domain });\n  }\n  if (contextDomain && Object.entries(contextDomain).length > 0) {\n    Object.assign(result, { contextDomain });\n  }\n  return result;\n}\n\n/** Extracts axes ids from axes spec array from column spec */\nexport function getAxesId(spec: AxesSpec): AxesId {\n  return spec.map(getAxisId);\n}\n\n/** Canonicalizes axis id */\nexport function canonicalizeAxisId(id: AxisId): CanonicalizedJson<AxisId> {\n  return canonicalizeJson(getAxisId(id));\n}\n\n/** Returns true if all domains from query are found in target */\nfunction matchDomain(query?: Record<string, string>, target?: Record<string, string>) {\n  if (query === undefined) return target === undefined;\n  if (target === undefined) return true;\n  for (const k in target) {\n    if (query[k] !== target[k]) return false;\n  }\n  return true;\n}\n\n/** Returns whether \"match\" axis id is compatible with the \"query\" */\nexport function matchAxisId(query: AxisId, target: AxisId): boolean {\n  return (\n    query.name === target.name &&\n    matchDomain(query.domain, target.domain) &&\n    matchDomain(query.contextDomain, target.contextDomain)\n  );\n}\n\nexport function getTypeFromPColumnOrAxisSpec(spec: PColumnSpec | AxisSpec): ValueType {\n  return \"valueType\" in spec ? spec.valueType : spec.type;\n}\n\nexport function isAxisId(id: unknown): id is AxisId {\n  return typeof id === \"object\" && id !== null && \"name\" in id && \"type\" in 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package/dist/pool/query.cjs

@@ -17,7 +17,7 @@ function executePSpecPredicate(predicate, spec) {
 		case "name_pattern": return require_spec.isPColumnSpec(spec) && Boolean(spec.name.match(predicate.pattern));
 		case "annotation": return require_spec.isPColumnSpec(spec) && spec.annotations !== void 0 && spec.annotations[predicate.annotation] === predicate.value;
 		case "annotation_pattern": return require_spec.isPColumnSpec(spec) && spec.annotations !== void 0 && spec.annotations[predicate.annotation] !== void 0 && Boolean(spec.annotations[predicate.annotation].match(predicate.pattern));
-		case "has_axes": return require_spec.isPColumnSpec(spec) && predicate.axes.every((matcher) => spec.axesSpec.some((axisSpec) => (matcher.type === void 0 || matcher.type === axisSpec.type) && (matcher.name === void 0 || matcher.name === axisSpec.name) && (matcher.domain === void 0 || Object.keys(matcher.domain).length === 0 || axisSpec.domain !== void 0 && Object.entries(matcher.domain).every(([domain, domainValue]) => axisSpec.domain[domain] === domainValue))));
+		case "has_axes": return require_spec.isPColumnSpec(spec) && predicate.axes.every((matcher) => spec.axesSpec.some((axisSpec) => (matcher.type === void 0 || matcher.type === axisSpec.type) && (matcher.name === void 0 || matcher.name === axisSpec.name) && (matcher.domain === void 0 || Object.keys(matcher.domain).length === 0 || axisSpec.domain !== void 0 && Object.entries(matcher.domain).every(([domain, domainValue]) => axisSpec.domain[domain] === domainValue)) && (matcher.contextDomain === void 0 || Object.keys(matcher.contextDomain).length === 0 || axisSpec.contextDomain !== void 0 && Object.entries(matcher.contextDomain).every(([key, value]) => axisSpec.contextDomain[key] === value))));
 		default: assertNever(predicate);
 	}
 }

package/dist/pool/query.cjs.map

@@ -1 +1 @@
-{"version":3,"file":"query.cjs","names":["isPColumnSpec"],"sources":["../../src/pool/query.ts"],"sourcesContent":["import type { AxisId } from \"../drivers\";\nimport type { PObjectSpec } from \"./spec\";\nimport { isPColumnSpec } from \"./spec\";\n\nexport type PSpecPredicate =\n  | {\n      type: \"and\" | \"or\";\n      operands: PSpecPredicate[];\n    }\n  | {\n      type: \"not\";\n      operand: PSpecPredicate;\n    }\n  | {\n      type: \"name\";\n      name: string;\n    }\n  | {\n      type: \"name_pattern\";\n      pattern: string;\n    }\n  | {\n      type: \"annotation\";\n      annotation: string;\n      value: string;\n    }\n  | {\n      type: \"annotation_pattern\";\n      annotation: string;\n      pattern: string;\n    }\n  | {\n      type: \"has_axes\";\n      axes: Partial<AxisId>[];\n    };\n\nfunction assertNever(x: never): never {\n  throw new Error(\"Unexpected object: \" + x); // This is ok, because this is a possible runtime error\n}\n\nexport function executePSpecPredicate(predicate: PSpecPredicate, spec: PObjectSpec): boolean {\n  switch (predicate.type) {\n    case \"and\":\n      for (const operator of predicate.operands)\n        if (!executePSpecPredicate(operator, spec)) return false;\n      return true;\n    case \"or\":\n      for (const operator of predicate.operands)\n        if (executePSpecPredicate(operator, spec)) return true;\n      return false;\n    case \"not\":\n      return !executePSpecPredicate(predicate.operand, spec);\n    case \"name\":\n      return isPColumnSpec(spec) && spec.name === predicate.name;\n    case \"name_pattern\":\n      return isPColumnSpec(spec) && Boolean(spec.name.match(predicate.pattern));\n    case \"annotation\":\n      return (\n        isPColumnSpec(spec) &&\n        spec.annotations !== undefined &&\n        spec.annotations[predicate.annotation] === predicate.value\n      );\n    case \"annotation_pattern\":\n      return (\n        isPColumnSpec(spec) &&\n        spec.annotations !== undefined &&\n        spec.annotations[predicate.annotation] !== undefined &&\n        Boolean(spec.annotations[predicate.annotation].match(predicate.pattern))\n      );\n    case \"has_axes\":\n      return (\n        isPColumnSpec(spec) &&\n        predicate.axes.every((matcher) =>\n          spec.axesSpec.some(\n            (axisSpec) =>\n              (matcher.type === undefined || matcher.type === axisSpec.type) &&\n              (matcher.name === undefined || matcher.name === axisSpec.name) &&\n              (matcher.domain === undefined ||\n                Object.keys(matcher.domain).length === 0 ||\n                (axisSpec.domain !== undefined &&\n                  Object.entries(matcher.domain).every(\n                    ([domain, domainValue]) => axisSpec.domain![domain] === domainValue,\n                  ))),\n          ),\n        )\n      );\n    default:\n      assertNever(predicate);\n  }\n}\n"],"mappings":";;;AAoCA,SAAS,YAAY,GAAiB;AACpC,OAAM,IAAI,MAAM,wBAAwB,EAAE;;AAG5C,SAAgB,sBAAsB,WAA2B,MAA4B;AAC3F,SAAQ,UAAU,MAAlB;EACE,KAAK;AACH,QAAK,MAAM,YAAY,UAAU,SAC/B,KAAI,CAAC,sBAAsB,UAAU,KAAK,CAAE,QAAO;AACrD,UAAO;EACT,KAAK;AACH,QAAK,MAAM,YAAY,UAAU,SAC/B,KAAI,sBAAsB,UAAU,KAAK,CAAE,QAAO;AACpD,UAAO;EACT,KAAK,MACH,QAAO,CAAC,sBAAsB,UAAU,SAAS,KAAK;EACxD,KAAK,OACH,QAAOA,2BAAc,KAAK,IAAI,KAAK,SAAS,UAAU;EACxD,KAAK,eACH,QAAOA,2BAAc,KAAK,IAAI,QAAQ,KAAK,KAAK,MAAM,UAAU,QAAQ,CAAC;EAC3E,KAAK,aACH,QACEA,2BAAc,KAAK,IACnB,KAAK,gBAAgB,UACrB,KAAK,YAAY,UAAU,gBAAgB,UAAU;EAEzD,KAAK,qBACH,QACEA,2BAAc,KAAK,IACnB,KAAK,gBAAgB,UACrB,KAAK,YAAY,UAAU,gBAAgB,UAC3C,QAAQ,KAAK,YAAY,UAAU,YAAY,MAAM,UAAU,QAAQ,CAAC;EAE5E,KAAK,WACH,QACEA,2BAAc,KAAK,IACnB,UAAU,KAAK,OAAO,YACpB,KAAK,SAAS,MACX,cACE,QAAQ,SAAS,UAAa,QAAQ,SAAS,SAAS,UACxD,QAAQ,SAAS,UAAa,QAAQ,SAAS,SAAS,UACxD,QAAQ,WAAW,UAClB,OAAO,KAAK,QAAQ,OAAO,CAAC,WAAW,KACtC,SAAS,WAAW,UACnB,OAAO,QAAQ,QAAQ,OAAO,CAAC,OAC5B,CAAC,QAAQ,iBAAiB,SAAS,OAAQ,YAAY,YACzD,EACR,CACF;EAEL,QACE,aAAY,UAAU"}
+{"version":3,"file":"query.cjs","names":["isPColumnSpec"],"sources":["../../src/pool/query.ts"],"sourcesContent":["import type { AxisId } from \"../drivers\";\nimport type { PObjectSpec } from \"./spec\";\nimport { isPColumnSpec } from \"./spec\";\n\nexport type PSpecPredicate =\n  | {\n      type: \"and\" | \"or\";\n      operands: PSpecPredicate[];\n    }\n  | {\n      type: \"not\";\n      operand: PSpecPredicate;\n    }\n  | {\n      type: \"name\";\n      name: string;\n    }\n  | {\n      type: \"name_pattern\";\n      pattern: string;\n    }\n  | {\n      type: \"annotation\";\n      annotation: string;\n      value: string;\n    }\n  | {\n      type: \"annotation_pattern\";\n      annotation: string;\n      pattern: string;\n    }\n  | {\n      type: \"has_axes\";\n      axes: Partial<AxisId>[];\n    };\n\nfunction assertNever(x: never): never {\n  throw new Error(\"Unexpected object: \" + x); // This is ok, because this is a possible runtime error\n}\n\nexport function executePSpecPredicate(predicate: PSpecPredicate, spec: PObjectSpec): boolean {\n  switch (predicate.type) {\n    case \"and\":\n      for (const operator of predicate.operands)\n        if (!executePSpecPredicate(operator, spec)) return false;\n      return true;\n    case \"or\":\n      for (const operator of predicate.operands)\n        if (executePSpecPredicate(operator, spec)) return true;\n      return false;\n    case \"not\":\n      return !executePSpecPredicate(predicate.operand, spec);\n    case \"name\":\n      return isPColumnSpec(spec) && spec.name === predicate.name;\n    case \"name_pattern\":\n      return isPColumnSpec(spec) && Boolean(spec.name.match(predicate.pattern));\n    case \"annotation\":\n      return (\n        isPColumnSpec(spec) &&\n        spec.annotations !== undefined &&\n        spec.annotations[predicate.annotation] === predicate.value\n      );\n    case \"annotation_pattern\":\n      return (\n        isPColumnSpec(spec) &&\n        spec.annotations !== undefined &&\n        spec.annotations[predicate.annotation] !== undefined &&\n        Boolean(spec.annotations[predicate.annotation].match(predicate.pattern))\n      );\n    case \"has_axes\":\n      return (\n        isPColumnSpec(spec) &&\n        predicate.axes.every((matcher) =>\n          spec.axesSpec.some(\n            (axisSpec) =>\n              (matcher.type === undefined || matcher.type === axisSpec.type) &&\n              (matcher.name === undefined || matcher.name === axisSpec.name) &&\n              (matcher.domain === undefined ||\n                Object.keys(matcher.domain).length === 0 ||\n                (axisSpec.domain !== undefined &&\n                  Object.entries(matcher.domain).every(\n                    ([domain, domainValue]) => axisSpec.domain![domain] === domainValue,\n                  ))) &&\n              (matcher.contextDomain === undefined ||\n                Object.keys(matcher.contextDomain).length === 0 ||\n                (axisSpec.contextDomain !== undefined &&\n                  Object.entries(matcher.contextDomain).every(\n                    ([key, value]) => axisSpec.contextDomain![key] === value,\n                  ))),\n          ),\n        )\n      );\n    default:\n      assertNever(predicate);\n  }\n}\n"],"mappings":";;;AAoCA,SAAS,YAAY,GAAiB;AACpC,OAAM,IAAI,MAAM,wBAAwB,EAAE;;AAG5C,SAAgB,sBAAsB,WAA2B,MAA4B;AAC3F,SAAQ,UAAU,MAAlB;EACE,KAAK;AACH,QAAK,MAAM,YAAY,UAAU,SAC/B,KAAI,CAAC,sBAAsB,UAAU,KAAK,CAAE,QAAO;AACrD,UAAO;EACT,KAAK;AACH,QAAK,MAAM,YAAY,UAAU,SAC/B,KAAI,sBAAsB,UAAU,KAAK,CAAE,QAAO;AACpD,UAAO;EACT,KAAK,MACH,QAAO,CAAC,sBAAsB,UAAU,SAAS,KAAK;EACxD,KAAK,OACH,QAAOA,2BAAc,KAAK,IAAI,KAAK,SAAS,UAAU;EACxD,KAAK,eACH,QAAOA,2BAAc,KAAK,IAAI,QAAQ,KAAK,KAAK,MAAM,UAAU,QAAQ,CAAC;EAC3E,KAAK,aACH,QACEA,2BAAc,KAAK,IACnB,KAAK,gBAAgB,UACrB,KAAK,YAAY,UAAU,gBAAgB,UAAU;EAEzD,KAAK,qBACH,QACEA,2BAAc,KAAK,IACnB,KAAK,gBAAgB,UACrB,KAAK,YAAY,UAAU,gBAAgB,UAC3C,QAAQ,KAAK,YAAY,UAAU,YAAY,MAAM,UAAU,QAAQ,CAAC;EAE5E,KAAK,WACH,QACEA,2BAAc,KAAK,IACnB,UAAU,KAAK,OAAO,YACpB,KAAK,SAAS,MACX,cACE,QAAQ,SAAS,UAAa,QAAQ,SAAS,SAAS,UACxD,QAAQ,SAAS,UAAa,QAAQ,SAAS,SAAS,UACxD,QAAQ,WAAW,UAClB,OAAO,KAAK,QAAQ,OAAO,CAAC,WAAW,KACtC,SAAS,WAAW,UACnB,OAAO,QAAQ,QAAQ,OAAO,CAAC,OAC5B,CAAC,QAAQ,iBAAiB,SAAS,OAAQ,YAAY,YACzD,MACJ,QAAQ,kBAAkB,UACzB,OAAO,KAAK,QAAQ,cAAc,CAAC,WAAW,KAC7C,SAAS,kBAAkB,UAC1B,OAAO,QAAQ,QAAQ,cAAc,CAAC,OACnC,CAAC,KAAK,WAAW,SAAS,cAAe,SAAS,MACpD,EACR,CACF;EAEL,QACE,aAAY,UAAU"}

package/dist/pool/query.js

@@ -17,7 +17,7 @@ function executePSpecPredicate(predicate, spec) {
 		case "name_pattern": return isPColumnSpec(spec) && Boolean(spec.name.match(predicate.pattern));
 		case "annotation": return isPColumnSpec(spec) && spec.annotations !== void 0 && spec.annotations[predicate.annotation] === predicate.value;
 		case "annotation_pattern": return isPColumnSpec(spec) && spec.annotations !== void 0 && spec.annotations[predicate.annotation] !== void 0 && Boolean(spec.annotations[predicate.annotation].match(predicate.pattern));
-		case "has_axes": return isPColumnSpec(spec) && predicate.axes.every((matcher) => spec.axesSpec.some((axisSpec) => (matcher.type === void 0 || matcher.type === axisSpec.type) && (matcher.name === void 0 || matcher.name === axisSpec.name) && (matcher.domain === void 0 || Object.keys(matcher.domain).length === 0 || axisSpec.domain !== void 0 && Object.entries(matcher.domain).every(([domain, domainValue]) => axisSpec.domain[domain] === domainValue))));
+		case "has_axes": return isPColumnSpec(spec) && predicate.axes.every((matcher) => spec.axesSpec.some((axisSpec) => (matcher.type === void 0 || matcher.type === axisSpec.type) && (matcher.name === void 0 || matcher.name === axisSpec.name) && (matcher.domain === void 0 || Object.keys(matcher.domain).length === 0 || axisSpec.domain !== void 0 && Object.entries(matcher.domain).every(([domain, domainValue]) => axisSpec.domain[domain] === domainValue)) && (matcher.contextDomain === void 0 || Object.keys(matcher.contextDomain).length === 0 || axisSpec.contextDomain !== void 0 && Object.entries(matcher.contextDomain).every(([key, value]) => axisSpec.contextDomain[key] === value))));
 		default: assertNever(predicate);
 	}
 }

package/dist/pool/query.js.map

@@ -1 +1 @@
-{"version":3,"file":"query.js","names":[],"sources":["../../src/pool/query.ts"],"sourcesContent":["import type { AxisId } from \"../drivers\";\nimport type { PObjectSpec } from \"./spec\";\nimport { isPColumnSpec } from \"./spec\";\n\nexport type PSpecPredicate =\n  | {\n      type: \"and\" | \"or\";\n      operands: PSpecPredicate[];\n    }\n  | {\n      type: \"not\";\n      operand: PSpecPredicate;\n    }\n  | {\n      type: \"name\";\n      name: string;\n    }\n  | {\n      type: \"name_pattern\";\n      pattern: string;\n    }\n  | {\n      type: \"annotation\";\n      annotation: string;\n      value: string;\n    }\n  | {\n      type: \"annotation_pattern\";\n      annotation: string;\n      pattern: string;\n    }\n  | {\n      type: \"has_axes\";\n      axes: Partial<AxisId>[];\n    };\n\nfunction assertNever(x: never): never {\n  throw new Error(\"Unexpected object: \" + x); // This is ok, because this is a possible runtime error\n}\n\nexport function executePSpecPredicate(predicate: PSpecPredicate, spec: PObjectSpec): boolean {\n  switch (predicate.type) {\n    case \"and\":\n      for (const operator of predicate.operands)\n        if (!executePSpecPredicate(operator, spec)) return false;\n      return true;\n    case \"or\":\n      for (const operator of predicate.operands)\n        if (executePSpecPredicate(operator, spec)) return true;\n      return false;\n    case \"not\":\n      return !executePSpecPredicate(predicate.operand, spec);\n    case \"name\":\n      return isPColumnSpec(spec) && spec.name === predicate.name;\n    case \"name_pattern\":\n      return isPColumnSpec(spec) && Boolean(spec.name.match(predicate.pattern));\n    case \"annotation\":\n      return (\n        isPColumnSpec(spec) &&\n        spec.annotations !== undefined &&\n        spec.annotations[predicate.annotation] === predicate.value\n      );\n    case \"annotation_pattern\":\n      return (\n        isPColumnSpec(spec) &&\n        spec.annotations !== undefined &&\n        spec.annotations[predicate.annotation] !== undefined &&\n        Boolean(spec.annotations[predicate.annotation].match(predicate.pattern))\n      );\n    case \"has_axes\":\n      return (\n        isPColumnSpec(spec) &&\n        predicate.axes.every((matcher) =>\n          spec.axesSpec.some(\n            (axisSpec) =>\n              (matcher.type === undefined || matcher.type === axisSpec.type) &&\n              (matcher.name === undefined || matcher.name === axisSpec.name) &&\n              (matcher.domain === undefined ||\n                Object.keys(matcher.domain).length === 0 ||\n                (axisSpec.domain !== undefined &&\n                  Object.entries(matcher.domain).every(\n                    ([domain, domainValue]) => axisSpec.domain![domain] === domainValue,\n                  ))),\n          ),\n        )\n      );\n    default:\n      assertNever(predicate);\n  }\n}\n"],"mappings":";;;AAoCA,SAAS,YAAY,GAAiB;AACpC,OAAM,IAAI,MAAM,wBAAwB,EAAE;;AAG5C,SAAgB,sBAAsB,WAA2B,MAA4B;AAC3F,SAAQ,UAAU,MAAlB;EACE,KAAK;AACH,QAAK,MAAM,YAAY,UAAU,SAC/B,KAAI,CAAC,sBAAsB,UAAU,KAAK,CAAE,QAAO;AACrD,UAAO;EACT,KAAK;AACH,QAAK,MAAM,YAAY,UAAU,SAC/B,KAAI,sBAAsB,UAAU,KAAK,CAAE,QAAO;AACpD,UAAO;EACT,KAAK,MACH,QAAO,CAAC,sBAAsB,UAAU,SAAS,KAAK;EACxD,KAAK,OACH,QAAO,cAAc,KAAK,IAAI,KAAK,SAAS,UAAU;EACxD,KAAK,eACH,QAAO,cAAc,KAAK,IAAI,QAAQ,KAAK,KAAK,MAAM,UAAU,QAAQ,CAAC;EAC3E,KAAK,aACH,QACE,cAAc,KAAK,IACnB,KAAK,gBAAgB,UACrB,KAAK,YAAY,UAAU,gBAAgB,UAAU;EAEzD,KAAK,qBACH,QACE,cAAc,KAAK,IACnB,KAAK,gBAAgB,UACrB,KAAK,YAAY,UAAU,gBAAgB,UAC3C,QAAQ,KAAK,YAAY,UAAU,YAAY,MAAM,UAAU,QAAQ,CAAC;EAE5E,KAAK,WACH,QACE,cAAc,KAAK,IACnB,UAAU,KAAK,OAAO,YACpB,KAAK,SAAS,MACX,cACE,QAAQ,SAAS,UAAa,QAAQ,SAAS,SAAS,UACxD,QAAQ,SAAS,UAAa,QAAQ,SAAS,SAAS,UACxD,QAAQ,WAAW,UAClB,OAAO,KAAK,QAAQ,OAAO,CAAC,WAAW,KACtC,SAAS,WAAW,UACnB,OAAO,QAAQ,QAAQ,OAAO,CAAC,OAC5B,CAAC,QAAQ,iBAAiB,SAAS,OAAQ,YAAY,YACzD,EACR,CACF;EAEL,QACE,aAAY,UAAU"}
+{"version":3,"file":"query.js","names":[],"sources":["../../src/pool/query.ts"],"sourcesContent":["import type { AxisId } from \"../drivers\";\nimport type { PObjectSpec } from \"./spec\";\nimport { isPColumnSpec } from \"./spec\";\n\nexport type PSpecPredicate =\n  | {\n      type: \"and\" | \"or\";\n      operands: PSpecPredicate[];\n    }\n  | {\n      type: \"not\";\n      operand: PSpecPredicate;\n    }\n  | {\n      type: \"name\";\n      name: string;\n    }\n  | {\n      type: \"name_pattern\";\n      pattern: string;\n    }\n  | {\n      type: \"annotation\";\n      annotation: string;\n      value: string;\n    }\n  | {\n      type: \"annotation_pattern\";\n      annotation: string;\n      pattern: string;\n    }\n  | {\n      type: \"has_axes\";\n      axes: Partial<AxisId>[];\n    };\n\nfunction assertNever(x: never): never {\n  throw new Error(\"Unexpected object: \" + x); // This is ok, because this is a possible runtime error\n}\n\nexport function executePSpecPredicate(predicate: PSpecPredicate, spec: PObjectSpec): boolean {\n  switch (predicate.type) {\n    case \"and\":\n      for (const operator of predicate.operands)\n        if (!executePSpecPredicate(operator, spec)) return false;\n      return true;\n    case \"or\":\n      for (const operator of predicate.operands)\n        if (executePSpecPredicate(operator, spec)) return true;\n      return false;\n    case \"not\":\n      return !executePSpecPredicate(predicate.operand, spec);\n    case \"name\":\n      return isPColumnSpec(spec) && spec.name === predicate.name;\n    case \"name_pattern\":\n      return isPColumnSpec(spec) && Boolean(spec.name.match(predicate.pattern));\n    case \"annotation\":\n      return (\n        isPColumnSpec(spec) &&\n        spec.annotations !== undefined &&\n        spec.annotations[predicate.annotation] === predicate.value\n      );\n    case \"annotation_pattern\":\n      return (\n        isPColumnSpec(spec) &&\n        spec.annotations !== undefined &&\n        spec.annotations[predicate.annotation] !== undefined &&\n        Boolean(spec.annotations[predicate.annotation].match(predicate.pattern))\n      );\n    case \"has_axes\":\n      return (\n        isPColumnSpec(spec) &&\n        predicate.axes.every((matcher) =>\n          spec.axesSpec.some(\n            (axisSpec) =>\n              (matcher.type === undefined || matcher.type === axisSpec.type) &&\n              (matcher.name === undefined || matcher.name === axisSpec.name) &&\n              (matcher.domain === undefined ||\n                Object.keys(matcher.domain).length === 0 ||\n                (axisSpec.domain !== undefined &&\n                  Object.entries(matcher.domain).every(\n                    ([domain, domainValue]) => axisSpec.domain![domain] === domainValue,\n                  ))) &&\n              (matcher.contextDomain === undefined ||\n                Object.keys(matcher.contextDomain).length === 0 ||\n                (axisSpec.contextDomain !== undefined &&\n                  Object.entries(matcher.contextDomain).every(\n                    ([key, value]) => axisSpec.contextDomain![key] === value,\n                  ))),\n          ),\n        )\n      );\n    default:\n      assertNever(predicate);\n  }\n}\n"],"mappings":";;;AAoCA,SAAS,YAAY,GAAiB;AACpC,OAAM,IAAI,MAAM,wBAAwB,EAAE;;AAG5C,SAAgB,sBAAsB,WAA2B,MAA4B;AAC3F,SAAQ,UAAU,MAAlB;EACE,KAAK;AACH,QAAK,MAAM,YAAY,UAAU,SAC/B,KAAI,CAAC,sBAAsB,UAAU,KAAK,CAAE,QAAO;AACrD,UAAO;EACT,KAAK;AACH,QAAK,MAAM,YAAY,UAAU,SAC/B,KAAI,sBAAsB,UAAU,KAAK,CAAE,QAAO;AACpD,UAAO;EACT,KAAK,MACH,QAAO,CAAC,sBAAsB,UAAU,SAAS,KAAK;EACxD,KAAK,OACH,QAAO,cAAc,KAAK,IAAI,KAAK,SAAS,UAAU;EACxD,KAAK,eACH,QAAO,cAAc,KAAK,IAAI,QAAQ,KAAK,KAAK,MAAM,UAAU,QAAQ,CAAC;EAC3E,KAAK,aACH,QACE,cAAc,KAAK,IACnB,KAAK,gBAAgB,UACrB,KAAK,YAAY,UAAU,gBAAgB,UAAU;EAEzD,KAAK,qBACH,QACE,cAAc,KAAK,IACnB,KAAK,gBAAgB,UACrB,KAAK,YAAY,UAAU,gBAAgB,UAC3C,QAAQ,KAAK,YAAY,UAAU,YAAY,MAAM,UAAU,QAAQ,CAAC;EAE5E,KAAK,WACH,QACE,cAAc,KAAK,IACnB,UAAU,KAAK,OAAO,YACpB,KAAK,SAAS,MACX,cACE,QAAQ,SAAS,UAAa,QAAQ,SAAS,SAAS,UACxD,QAAQ,SAAS,UAAa,QAAQ,SAAS,SAAS,UACxD,QAAQ,WAAW,UAClB,OAAO,KAAK,QAAQ,OAAO,CAAC,WAAW,KACtC,SAAS,WAAW,UACnB,OAAO,QAAQ,QAAQ,OAAO,CAAC,OAC5B,CAAC,QAAQ,iBAAiB,SAAS,OAAQ,YAAY,YACzD,MACJ,QAAQ,kBAAkB,UACzB,OAAO,KAAK,QAAQ,cAAc,CAAC,WAAW,KAC7C,SAAS,kBAAkB,UAC1B,OAAO,QAAQ,QAAQ,cAAc,CAAC,OACnC,CAAC,KAAK,WAAW,SAAS,cAAe,SAAS,MACpD,EACR,CACF;EAEL,QACE,aAAY,UAAU"}

package/dist/pool/spec.cjs.map

@@ -1 +1 @@
-{"version":3,"file":"spec.cjs","names":[],"sources":["../../src/pool/spec.ts"],"sourcesContent":["import type { Branded } from \"../branding\";\nimport type { JoinEntry, PColumn, PColumnLazy, PColumnSpec } from \"../drivers\";\nimport { assertNever } from \"../util\";\nimport type { ResultPoolEntry } from \"./entry\";\n\n/** Any object exported into the result pool by the block always have spec attached to it */\nexport type PObjectSpec = {\n  /** PObject kind discriminator */\n  readonly kind: string;\n\n  /** Name is common part of PObject identity */\n  readonly name: string;\n\n  /** Domain is a set of key-value pairs that can be used to identify the object */\n  readonly domain?: Record<string, string>;\n\n  /** Additional information attached to the object */\n  readonly annotations?: Record<string, string>;\n};\n\n/** Stable PObject id */\nexport type PObjectId = Branded<string, \"PColumnId\">;\n\n/**\n * Full PObject representation.\n *\n * @template Data type of the object referencing or describing the \"data\" part of the PObject\n * */\nexport interface PObject<Data> {\n  /** Fully rendered PObjects are assigned a stable identifier. */\n  readonly id: PObjectId;\n\n  /** PObject spec, allowing it to be found among other PObjects */\n  readonly spec: PObjectSpec;\n\n  /** A handle to data object */\n  readonly data: Data;\n}\n\nexport function isPColumnSpec(spec: PObjectSpec): spec is PColumnSpec {\n  return spec.kind === \"PColumn\";\n}\n\nexport function isPColumn<T>(obj: PObject<T>): obj is PColumn<T> {\n  return isPColumnSpec(obj.spec);\n}\n\nexport function isPColumnSpecResult(\n  r: ResultPoolEntry<PObjectSpec>,\n): r is ResultPoolEntry<PColumnSpec> {\n  return isPColumnSpec(r.obj);\n}\n\nexport function isPColumnResult<T>(\n  r: ResultPoolEntry<PObject<T>>,\n): r is ResultPoolEntry<PColumn<T>> {\n  return isPColumnSpec(r.obj.spec);\n}\n\nexport function ensurePColumn<T>(obj: PObject<T>): PColumn<T> {\n  if (!isPColumn(obj)) throw new Error(`not a PColumn (kind = ${obj.spec.kind})`);\n  return obj;\n}\n\nexport function mapPObjectData<D1, D2>(\n  pObj: PColumn<D1> | PColumnLazy<D1>,\n  cb: (d: D1) => D2,\n): PColumn<D2>;\nexport function mapPObjectData<D1, D2>(pObj: PColumn<D1>, cb: (d: D1) => D2): PColumn<D2>;\nexport function mapPObjectData<D1, D2>(\n  pObj: PColumn<D1> | undefined,\n  cb: (d: D1) => D2,\n): PColumn<D2> | undefined;\nexport function mapPObjectData<D1, D2>(pObj: PObject<D1>, cb: (d: D1) => D2): PObject<D2>;\nexport function mapPObjectData<D1, D2>(\n  pObj: PObject<D1> | undefined,\n  cb: (d: D1) => D2,\n): PObject<D2> | undefined;\nexport function mapPObjectData<D1, D2>(\n  pObj: PObject<D1> | undefined,\n  cb: (d: D1) => D2,\n): PObject<D2> | undefined {\n  return pObj === undefined\n    ? undefined\n    : {\n        ...pObj,\n        data: cb(typeof pObj.data === \"function\" ? pObj.data() : pObj.data),\n      };\n}\n\nexport function extractAllColumns<D>(entry: JoinEntry<PColumn<D>>): PColumn<D>[] {\n  const columns = new Map<PObjectId, PColumn<D>>();\n  const addAllColumns = (entry: JoinEntry<PColumn<D>>) => {\n    switch (entry.type) {\n      case \"column\":\n        columns.set(entry.column.id, entry.column);\n        return;\n      case \"slicedColumn\":\n        columns.set(entry.column.id, entry.column);\n        return;\n      case \"artificialColumn\":\n        columns.set(entry.column.id, entry.column);\n        return;\n      case \"inlineColumn\":\n        return;\n      case \"full\":\n      case \"inner\":\n        for (const e of entry.entries) addAllColumns(e);\n        return;\n      case \"outer\":\n        addAllColumns(entry.primary);\n        for (const e of entry.secondary) addAllColumns(e);\n        return;\n      default:\n        assertNever(entry);\n    }\n  };\n  addAllColumns(entry);\n  return [...columns.values()];\n}\n"],"mappings":";;;AAuCA,SAAgB,cAAc,MAAwC;AACpE,QAAO,KAAK,SAAS;;AAGvB,SAAgB,UAAa,KAAoC;AAC/D,QAAO,cAAc,IAAI,KAAK;;AAGhC,SAAgB,oBACd,GACmC;AACnC,QAAO,cAAc,EAAE,IAAI;;AAG7B,SAAgB,gBACd,GACkC;AAClC,QAAO,cAAc,EAAE,IAAI,KAAK;;AAGlC,SAAgB,cAAiB,KAA6B;AAC5D,KAAI,CAAC,UAAU,IAAI,CAAE,OAAM,IAAI,MAAM,yBAAyB,IAAI,KAAK,KAAK,GAAG;AAC/E,QAAO;;AAiBT,SAAgB,eACd,MACA,IACyB;AACzB,QAAO,SAAS,SACZ,SACA;EACE,GAAG;EACH,MAAM,GAAG,OAAO,KAAK,SAAS,aAAa,KAAK,MAAM,GAAG,KAAK,KAAK;EACpE;;AAGP,SAAgB,kBAAqB,OAA4C;CAC/E,MAAM,0BAAU,IAAI,KAA4B;CAChD,MAAM,iBAAiB,UAAiC;AACtD,UAAQ,MAAM,MAAd;GACE,KAAK;AACH,YAAQ,IAAI,MAAM,OAAO,IAAI,MAAM,OAAO;AAC1C;GACF,KAAK;AACH,YAAQ,IAAI,MAAM,OAAO,IAAI,MAAM,OAAO;AAC1C;GACF,KAAK;AACH,YAAQ,IAAI,MAAM,OAAO,IAAI,MAAM,OAAO;AAC1C;GACF,KAAK,eACH;GACF,KAAK;GACL,KAAK;AACH,SAAK,MAAM,KAAK,MAAM,QAAS,eAAc,EAAE;AAC/C;GACF,KAAK;AACH,kBAAc,MAAM,QAAQ;AAC5B,SAAK,MAAM,KAAK,MAAM,UAAW,eAAc,EAAE;AACjD;GACF,QACE,0BAAY,MAAM;;;AAGxB,eAAc,MAAM;AACpB,QAAO,CAAC,GAAG,QAAQ,QAAQ,CAAC"}
+{"version":3,"file":"spec.cjs","names":[],"sources":["../../src/pool/spec.ts"],"sourcesContent":["import type { Branded } from \"../branding\";\nimport type { JoinEntry, PColumn, PColumnLazy, PColumnSpec } from \"../drivers\";\nimport { assertNever } from \"../util\";\nimport type { ResultPoolEntry } from \"./entry\";\n\n/** Any object exported into the result pool by the block always have spec attached to it */\nexport type PObjectSpec = {\n  /** PObject kind discriminator */\n  readonly kind: string;\n\n  /** Name is common part of PObject identity */\n  readonly name: string;\n\n  /** Domain is a set of key-value pairs that can be used to identify the object */\n  readonly domain?: Record<string, string>;\n\n  /** Context domain provides additional axis/column identity that is matched\n   * by kinship rules (subset/superset/overlap) rather than exact equality */\n  readonly contextDomain?: Record<string, string>;\n\n  /** Additional information attached to the object */\n  readonly annotations?: Record<string, string>;\n};\n\n/** Stable PObject id */\nexport type PObjectId = Branded<string, \"PColumnId\">;\n\n/**\n * Full PObject representation.\n *\n * @template Data type of the object referencing or describing the \"data\" part of the PObject\n * */\nexport interface PObject<Data> {\n  /** Fully rendered PObjects are assigned a stable identifier. */\n  readonly id: PObjectId;\n\n  /** PObject spec, allowing it to be found among other PObjects */\n  readonly spec: PObjectSpec;\n\n  /** A handle to data object */\n  readonly data: Data;\n}\n\nexport function isPColumnSpec(spec: PObjectSpec): spec is PColumnSpec {\n  return spec.kind === \"PColumn\";\n}\n\nexport function isPColumn<T>(obj: PObject<T>): obj is PColumn<T> {\n  return isPColumnSpec(obj.spec);\n}\n\nexport function isPColumnSpecResult(\n  r: ResultPoolEntry<PObjectSpec>,\n): r is ResultPoolEntry<PColumnSpec> {\n  return isPColumnSpec(r.obj);\n}\n\nexport function isPColumnResult<T>(\n  r: ResultPoolEntry<PObject<T>>,\n): r is ResultPoolEntry<PColumn<T>> {\n  return isPColumnSpec(r.obj.spec);\n}\n\nexport function ensurePColumn<T>(obj: PObject<T>): PColumn<T> {\n  if (!isPColumn(obj)) throw new Error(`not a PColumn (kind = ${obj.spec.kind})`);\n  return obj;\n}\n\nexport function mapPObjectData<D1, D2>(\n  pObj: PColumn<D1> | PColumnLazy<D1>,\n  cb: (d: D1) => D2,\n): PColumn<D2>;\nexport function mapPObjectData<D1, D2>(pObj: PColumn<D1>, cb: (d: D1) => D2): PColumn<D2>;\nexport function mapPObjectData<D1, D2>(\n  pObj: PColumn<D1> | undefined,\n  cb: (d: D1) => D2,\n): PColumn<D2> | undefined;\nexport function mapPObjectData<D1, D2>(pObj: PObject<D1>, cb: (d: D1) => D2): PObject<D2>;\nexport function mapPObjectData<D1, D2>(\n  pObj: PObject<D1> | undefined,\n  cb: (d: D1) => D2,\n): PObject<D2> | undefined;\nexport function mapPObjectData<D1, D2>(\n  pObj: PObject<D1> | undefined,\n  cb: (d: D1) => D2,\n): PObject<D2> | undefined {\n  return pObj === undefined\n    ? undefined\n    : {\n        ...pObj,\n        data: cb(typeof pObj.data === \"function\" ? pObj.data() : pObj.data),\n      };\n}\n\nexport function extractAllColumns<D>(entry: JoinEntry<PColumn<D>>): PColumn<D>[] {\n  const columns = new Map<PObjectId, PColumn<D>>();\n  const addAllColumns = (entry: JoinEntry<PColumn<D>>) => {\n    switch (entry.type) {\n      case \"column\":\n        columns.set(entry.column.id, entry.column);\n        return;\n      case \"slicedColumn\":\n        columns.set(entry.column.id, entry.column);\n        return;\n      case \"artificialColumn\":\n        columns.set(entry.column.id, entry.column);\n        return;\n      case \"inlineColumn\":\n        return;\n      case \"full\":\n      case \"inner\":\n        for (const e of entry.entries) addAllColumns(e);\n        return;\n      case \"outer\":\n        addAllColumns(entry.primary);\n        for (const e of entry.secondary) addAllColumns(e);\n        return;\n      default:\n        assertNever(entry);\n    }\n  };\n  addAllColumns(entry);\n  return [...columns.values()];\n}\n"],"mappings":";;;AA2CA,SAAgB,cAAc,MAAwC;AACpE,QAAO,KAAK,SAAS;;AAGvB,SAAgB,UAAa,KAAoC;AAC/D,QAAO,cAAc,IAAI,KAAK;;AAGhC,SAAgB,oBACd,GACmC;AACnC,QAAO,cAAc,EAAE,IAAI;;AAG7B,SAAgB,gBACd,GACkC;AAClC,QAAO,cAAc,EAAE,IAAI,KAAK;;AAGlC,SAAgB,cAAiB,KAA6B;AAC5D,KAAI,CAAC,UAAU,IAAI,CAAE,OAAM,IAAI,MAAM,yBAAyB,IAAI,KAAK,KAAK,GAAG;AAC/E,QAAO;;AAiBT,SAAgB,eACd,MACA,IACyB;AACzB,QAAO,SAAS,SACZ,SACA;EACE,GAAG;EACH,MAAM,GAAG,OAAO,KAAK,SAAS,aAAa,KAAK,MAAM,GAAG,KAAK,KAAK;EACpE;;AAGP,SAAgB,kBAAqB,OAA4C;CAC/E,MAAM,0BAAU,IAAI,KAA4B;CAChD,MAAM,iBAAiB,UAAiC;AACtD,UAAQ,MAAM,MAAd;GACE,KAAK;AACH,YAAQ,IAAI,MAAM,OAAO,IAAI,MAAM,OAAO;AAC1C;GACF,KAAK;AACH,YAAQ,IAAI,MAAM,OAAO,IAAI,MAAM,OAAO;AAC1C;GACF,KAAK;AACH,YAAQ,IAAI,MAAM,OAAO,IAAI,MAAM,OAAO;AAC1C;GACF,KAAK,eACH;GACF,KAAK;GACL,KAAK;AACH,SAAK,MAAM,KAAK,MAAM,QAAS,eAAc,EAAE;AAC/C;GACF,KAAK;AACH,kBAAc,MAAM,QAAQ;AAC5B,SAAK,MAAM,KAAK,MAAM,UAAW,eAAc,EAAE;AACjD;GACF,QACE,0BAAY,MAAM;;;AAGxB,eAAc,MAAM;AACpB,QAAO,CAAC,GAAG,QAAQ,QAAQ,CAAC"}

package/dist/pool/spec.d.ts

@@ -9,7 +9,10 @@ import "../drivers/index.js";
 type PObjectSpec = {
   /** PObject kind discriminator */readonly kind: string; /** Name is common part of PObject identity */
   readonly name: string; /** Domain is a set of key-value pairs that can be used to identify the object */
-  readonly domain?: Record<string, string>; /** Additional information attached to the object */
+  readonly domain?: Record<string, string>;
+  /** Context domain provides additional axis/column identity that is matched
+   * by kinship rules (subset/superset/overlap) rather than exact equality */
+  readonly contextDomain?: Record<string, string>; /** Additional information attached to the object */
   readonly annotations?: Record<string, string>;
 };
 /** Stable PObject id */

package/dist/pool/spec.js.map

@@ -1 +1 @@
-{"version":3,"file":"spec.js","names":[],"sources":["../../src/pool/spec.ts"],"sourcesContent":["import type { Branded } from \"../branding\";\nimport type { JoinEntry, PColumn, PColumnLazy, PColumnSpec } from \"../drivers\";\nimport { assertNever } from \"../util\";\nimport type { ResultPoolEntry } from \"./entry\";\n\n/** Any object exported into the result pool by the block always have spec attached to it */\nexport type PObjectSpec = {\n  /** PObject kind discriminator */\n  readonly kind: string;\n\n  /** Name is common part of PObject identity */\n  readonly name: string;\n\n  /** Domain is a set of key-value pairs that can be used to identify the object */\n  readonly domain?: Record<string, string>;\n\n  /** Additional information attached to the object */\n  readonly annotations?: Record<string, string>;\n};\n\n/** Stable PObject id */\nexport type PObjectId = Branded<string, \"PColumnId\">;\n\n/**\n * Full PObject representation.\n *\n * @template Data type of the object referencing or describing the \"data\" part of the PObject\n * */\nexport interface PObject<Data> {\n  /** Fully rendered PObjects are assigned a stable identifier. */\n  readonly id: PObjectId;\n\n  /** PObject spec, allowing it to be found among other PObjects */\n  readonly spec: PObjectSpec;\n\n  /** A handle to data object */\n  readonly data: Data;\n}\n\nexport function isPColumnSpec(spec: PObjectSpec): spec is PColumnSpec {\n  return spec.kind === \"PColumn\";\n}\n\nexport function isPColumn<T>(obj: PObject<T>): obj is PColumn<T> {\n  return isPColumnSpec(obj.spec);\n}\n\nexport function isPColumnSpecResult(\n  r: ResultPoolEntry<PObjectSpec>,\n): r is ResultPoolEntry<PColumnSpec> {\n  return isPColumnSpec(r.obj);\n}\n\nexport function isPColumnResult<T>(\n  r: ResultPoolEntry<PObject<T>>,\n): r is ResultPoolEntry<PColumn<T>> {\n  return isPColumnSpec(r.obj.spec);\n}\n\nexport function ensurePColumn<T>(obj: PObject<T>): PColumn<T> {\n  if (!isPColumn(obj)) throw new Error(`not a PColumn (kind = ${obj.spec.kind})`);\n  return obj;\n}\n\nexport function mapPObjectData<D1, D2>(\n  pObj: PColumn<D1> | PColumnLazy<D1>,\n  cb: (d: D1) => D2,\n): PColumn<D2>;\nexport function mapPObjectData<D1, D2>(pObj: PColumn<D1>, cb: (d: D1) => D2): PColumn<D2>;\nexport function mapPObjectData<D1, D2>(\n  pObj: PColumn<D1> | undefined,\n  cb: (d: D1) => D2,\n): PColumn<D2> | undefined;\nexport function mapPObjectData<D1, D2>(pObj: PObject<D1>, cb: (d: D1) => D2): PObject<D2>;\nexport function mapPObjectData<D1, D2>(\n  pObj: PObject<D1> | undefined,\n  cb: (d: D1) => D2,\n): PObject<D2> | undefined;\nexport function mapPObjectData<D1, D2>(\n  pObj: PObject<D1> | undefined,\n  cb: (d: D1) => D2,\n): PObject<D2> | undefined {\n  return pObj === undefined\n    ? undefined\n    : {\n        ...pObj,\n        data: cb(typeof pObj.data === \"function\" ? pObj.data() : pObj.data),\n      };\n}\n\nexport function extractAllColumns<D>(entry: JoinEntry<PColumn<D>>): PColumn<D>[] {\n  const columns = new Map<PObjectId, PColumn<D>>();\n  const addAllColumns = (entry: JoinEntry<PColumn<D>>) => {\n    switch (entry.type) {\n      case \"column\":\n        columns.set(entry.column.id, entry.column);\n        return;\n      case \"slicedColumn\":\n        columns.set(entry.column.id, entry.column);\n        return;\n      case \"artificialColumn\":\n        columns.set(entry.column.id, entry.column);\n        return;\n      case \"inlineColumn\":\n        return;\n      case \"full\":\n      case \"inner\":\n        for (const e of entry.entries) addAllColumns(e);\n        return;\n      case \"outer\":\n        addAllColumns(entry.primary);\n        for (const e of entry.secondary) addAllColumns(e);\n        return;\n      default:\n        assertNever(entry);\n    }\n  };\n  addAllColumns(entry);\n  return [...columns.values()];\n}\n"],"mappings":";;;AAuCA,SAAgB,cAAc,MAAwC;AACpE,QAAO,KAAK,SAAS;;AAGvB,SAAgB,UAAa,KAAoC;AAC/D,QAAO,cAAc,IAAI,KAAK;;AAGhC,SAAgB,oBACd,GACmC;AACnC,QAAO,cAAc,EAAE,IAAI;;AAG7B,SAAgB,gBACd,GACkC;AAClC,QAAO,cAAc,EAAE,IAAI,KAAK;;AAGlC,SAAgB,cAAiB,KAA6B;AAC5D,KAAI,CAAC,UAAU,IAAI,CAAE,OAAM,IAAI,MAAM,yBAAyB,IAAI,KAAK,KAAK,GAAG;AAC/E,QAAO;;AAiBT,SAAgB,eACd,MACA,IACyB;AACzB,QAAO,SAAS,SACZ,SACA;EACE,GAAG;EACH,MAAM,GAAG,OAAO,KAAK,SAAS,aAAa,KAAK,MAAM,GAAG,KAAK,KAAK;EACpE;;AAGP,SAAgB,kBAAqB,OAA4C;CAC/E,MAAM,0BAAU,IAAI,KAA4B;CAChD,MAAM,iBAAiB,UAAiC;AACtD,UAAQ,MAAM,MAAd;GACE,KAAK;AACH,YAAQ,IAAI,MAAM,OAAO,IAAI,MAAM,OAAO;AAC1C;GACF,KAAK;AACH,YAAQ,IAAI,MAAM,OAAO,IAAI,MAAM,OAAO;AAC1C;GACF,KAAK;AACH,YAAQ,IAAI,MAAM,OAAO,IAAI,MAAM,OAAO;AAC1C;GACF,KAAK,eACH;GACF,KAAK;GACL,KAAK;AACH,SAAK,MAAM,KAAK,MAAM,QAAS,eAAc,EAAE;AAC/C;GACF,KAAK;AACH,kBAAc,MAAM,QAAQ;AAC5B,SAAK,MAAM,KAAK,MAAM,UAAW,eAAc,EAAE;AACjD;GACF,QACE,aAAY,MAAM;;;AAGxB,eAAc,MAAM;AACpB,QAAO,CAAC,GAAG,QAAQ,QAAQ,CAAC"}
+{"version":3,"file":"spec.js","names":[],"sources":["../../src/pool/spec.ts"],"sourcesContent":["import type { Branded } from \"../branding\";\nimport type { JoinEntry, PColumn, PColumnLazy, PColumnSpec } from \"../drivers\";\nimport { assertNever } from \"../util\";\nimport type { ResultPoolEntry } from \"./entry\";\n\n/** Any object exported into the result pool by the block always have spec attached to it */\nexport type PObjectSpec = {\n  /** PObject kind discriminator */\n  readonly kind: string;\n\n  /** Name is common part of PObject identity */\n  readonly name: string;\n\n  /** Domain is a set of key-value pairs that can be used to identify the object */\n  readonly domain?: Record<string, string>;\n\n  /** Context domain provides additional axis/column identity that is matched\n   * by kinship rules (subset/superset/overlap) rather than exact equality */\n  readonly contextDomain?: Record<string, string>;\n\n  /** Additional information attached to the object */\n  readonly annotations?: Record<string, string>;\n};\n\n/** Stable PObject id */\nexport type PObjectId = Branded<string, \"PColumnId\">;\n\n/**\n * Full PObject representation.\n *\n * @template Data type of the object referencing or describing the \"data\" part of the PObject\n * */\nexport interface PObject<Data> {\n  /** Fully rendered PObjects are assigned a stable identifier. */\n  readonly id: PObjectId;\n\n  /** PObject spec, allowing it to be found among other PObjects */\n  readonly spec: PObjectSpec;\n\n  /** A handle to data object */\n  readonly data: Data;\n}\n\nexport function isPColumnSpec(spec: PObjectSpec): spec is PColumnSpec {\n  return spec.kind === \"PColumn\";\n}\n\nexport function isPColumn<T>(obj: PObject<T>): obj is PColumn<T> {\n  return isPColumnSpec(obj.spec);\n}\n\nexport function isPColumnSpecResult(\n  r: ResultPoolEntry<PObjectSpec>,\n): r is ResultPoolEntry<PColumnSpec> {\n  return isPColumnSpec(r.obj);\n}\n\nexport function isPColumnResult<T>(\n  r: ResultPoolEntry<PObject<T>>,\n): r is ResultPoolEntry<PColumn<T>> {\n  return isPColumnSpec(r.obj.spec);\n}\n\nexport function ensurePColumn<T>(obj: PObject<T>): PColumn<T> {\n  if (!isPColumn(obj)) throw new Error(`not a PColumn (kind = ${obj.spec.kind})`);\n  return obj;\n}\n\nexport function mapPObjectData<D1, D2>(\n  pObj: PColumn<D1> | PColumnLazy<D1>,\n  cb: (d: D1) => D2,\n): PColumn<D2>;\nexport function mapPObjectData<D1, D2>(pObj: PColumn<D1>, cb: (d: D1) => D2): PColumn<D2>;\nexport function mapPObjectData<D1, D2>(\n  pObj: PColumn<D1> | undefined,\n  cb: (d: D1) => D2,\n): PColumn<D2> | undefined;\nexport function mapPObjectData<D1, D2>(pObj: PObject<D1>, cb: (d: D1) => D2): PObject<D2>;\nexport function mapPObjectData<D1, D2>(\n  pObj: PObject<D1> | undefined,\n  cb: (d: D1) => D2,\n): PObject<D2> | undefined;\nexport function mapPObjectData<D1, D2>(\n  pObj: PObject<D1> | undefined,\n  cb: (d: D1) => D2,\n): PObject<D2> | undefined {\n  return pObj === undefined\n    ? undefined\n    : {\n        ...pObj,\n        data: cb(typeof pObj.data === \"function\" ? pObj.data() : pObj.data),\n      };\n}\n\nexport function extractAllColumns<D>(entry: JoinEntry<PColumn<D>>): PColumn<D>[] {\n  const columns = new Map<PObjectId, PColumn<D>>();\n  const addAllColumns = (entry: JoinEntry<PColumn<D>>) => {\n    switch (entry.type) {\n      case \"column\":\n        columns.set(entry.column.id, entry.column);\n        return;\n      case \"slicedColumn\":\n        columns.set(entry.column.id, entry.column);\n        return;\n      case \"artificialColumn\":\n        columns.set(entry.column.id, entry.column);\n        return;\n      case \"inlineColumn\":\n        return;\n      case \"full\":\n      case \"inner\":\n        for (const e of entry.entries) addAllColumns(e);\n        return;\n      case \"outer\":\n        addAllColumns(entry.primary);\n        for (const e of entry.secondary) addAllColumns(e);\n        return;\n      default:\n        assertNever(entry);\n    }\n  };\n  addAllColumns(entry);\n  return [...columns.values()];\n}\n"],"mappings":";;;AA2CA,SAAgB,cAAc,MAAwC;AACpE,QAAO,KAAK,SAAS;;AAGvB,SAAgB,UAAa,KAAoC;AAC/D,QAAO,cAAc,IAAI,KAAK;;AAGhC,SAAgB,oBACd,GACmC;AACnC,QAAO,cAAc,EAAE,IAAI;;AAG7B,SAAgB,gBACd,GACkC;AAClC,QAAO,cAAc,EAAE,IAAI,KAAK;;AAGlC,SAAgB,cAAiB,KAA6B;AAC5D,KAAI,CAAC,UAAU,IAAI,CAAE,OAAM,IAAI,MAAM,yBAAyB,IAAI,KAAK,KAAK,GAAG;AAC/E,QAAO;;AAiBT,SAAgB,eACd,MACA,IACyB;AACzB,QAAO,SAAS,SACZ,SACA;EACE,GAAG;EACH,MAAM,GAAG,OAAO,KAAK,SAAS,aAAa,KAAK,MAAM,GAAG,KAAK,KAAK;EACpE;;AAGP,SAAgB,kBAAqB,OAA4C;CAC/E,MAAM,0BAAU,IAAI,KAA4B;CAChD,MAAM,iBAAiB,UAAiC;AACtD,UAAQ,MAAM,MAAd;GACE,KAAK;AACH,YAAQ,IAAI,MAAM,OAAO,IAAI,MAAM,OAAO;AAC1C;GACF,KAAK;AACH,YAAQ,IAAI,MAAM,OAAO,IAAI,MAAM,OAAO;AAC1C;GACF,KAAK;AACH,YAAQ,IAAI,MAAM,OAAO,IAAI,MAAM,OAAO;AAC1C;GACF,KAAK,eACH;GACF,KAAK;GACL,KAAK;AACH,SAAK,MAAM,KAAK,MAAM,QAAS,eAAc,EAAE;AAC/C;GACF,KAAK;AACH,kBAAc,MAAM,QAAQ;AAC5B,SAAK,MAAM,KAAK,MAAM,UAAW,eAAc,EAAE;AACjD;GACF,QACE,aAAY,MAAM;;;AAGxB,eAAc,MAAM;AACpB,QAAO,CAAC,GAAG,QAAQ,QAAQ,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@milaboratories/pl-model-common",
-  "version": "1.25.3",
+  "version": "1.26.1",
   "description": "Platforma SDK Model",
   "files": [
     "./dist/**/*",
@@ -25,9 +25,9 @@
     "@vitest/coverage-istanbul": "^4.0.18",
     "typescript": "~5.9.3",
     "vitest": "^4.0.18",
-    "@milaboratories/build-configs": "1.5.2",
+    "@milaboratories/ts-configs": "1.2.2",
     "@milaboratories/ts-builder": "1.3.0",
-    "@milaboratories/ts-configs": "1.2.2"
+    "@milaboratories/build-configs": "1.5.2"
   },
   "scripts": {
     "build": "ts-builder build --target node",

package/src/drivers/pframe/linker_columns.test.ts

@@ -98,7 +98,7 @@ describe("Linker columns", () => {
       expect(linkers.map((item) => item.spec.name).sort()).toEqual(params.expected);
     };
 
-    testCase({ from: [axis2], to: [axis3], expected: ["c12", "c13"] });
+    testCase({ from: [axis2], to: [axis3], expected: [] });
     testCase({ from: [axis1], to: [axis2], expected: ["c12"] });
     testCase({ from: [axis1], to: [axis4], expected: [] });
   });
@@ -239,11 +239,13 @@ describe("Linker columns", () => {
 
     const linkersMap = LinkerMap.fromColumns([linker1, linker2]);
 
+    // Forward-only: from group2 we only reach group3 (no back edge to group1)
     expect(
       new Set(
         linkersMap.getReachableByLinkersAxesFromAxesNormalized(group2Normalized).map((a) => a.name),
       ),
-    ).toEqual(new Set([...group1, ...group3].map((a) => a.name)));
+    ).toEqual(new Set([...group3].map((a) => a.name)));
+    // Non-root axes (axisDn, axisBn) don't match linker map keys, so no forward reachability
     expect(linkersMap.getReachableByLinkersAxesFromAxesNormalized([axisDn])).toEqual([]);
     expect(linkersMap.getReachableByLinkersAxesFromAxesNormalized([axisBn])).toEqual([]);
   });
@@ -282,7 +284,7 @@ describe("Linker columns", () => {
           getNormalizedAxesList([axisA, axisB, axisC, axisE]),
         )
         .map((v) => v.name),
-    ).toEqual(["a", "b", "e"]);
+    ).toEqual(["a", "b", "c", "e"]);
 
     expect(
       linkerMap
@@ -290,4 +292,21 @@ describe("Linker columns", () => {
         .map((v) => v.name),
     ).toEqual(["a", "b", "c", "e"]);
   });
+
+  test("getReachableByLinkersAxesFromAxes", () => {
+    const axisA = makeTestAxis({ name: "a" });
+    const axisB = makeTestAxis({ name: "b" });
+    const axisC = makeTestAxis({ name: "c" });
+    const axisD = makeTestAxis({ name: "d" });
+    const linkerMap = LinkerMap.fromColumns([
+      makeLinkerColumn({ name: "linker1", from: [axisA], to: [axisB] }),
+      makeLinkerColumn({ name: "linker2", from: [axisB], to: [axisC] }),
+      makeLinkerColumn({ name: "linker3", from: [axisC], to: [axisD] }),
+    ]);
+
+    expect(linkerMap.getReachableByLinkersAxesFromAxes([axisA])).toEqual(
+      getNormalizedAxesList([axisB, axisC, axisD]),
+    );
+    expect(linkerMap.getReachableByLinkersAxesFromAxes([axisD])).toEqual([]);
+  });
 });

package/src/drivers/pframe/linker_columns.ts

@@ -89,7 +89,6 @@ export class LinkerMap implements LinkersData {
       for (const [keyLeft] of leftKeyVariants) {
         for (const [keyRight] of rightKeyVariants) {
           result.get(keyLeft)?.linkWith.set(keyRight, linker);
-          result.get(keyRight)?.linkWith.set(keyLeft, linker);
         }
       }
     }
@@ -138,7 +137,8 @@ export class LinkerMap implements LinkersData {
               current = previous[current];
             }
             ids.push(current);
-            return ids.map((id: LinkerKey) => this.data.get(id)!.linkWith.get(previous[id])!);
+            // Edge (previous[id] -> id) is stored at the "from" node in one-directional map
+            return ids.map((id: LinkerKey) => this.data.get(previous[id])!.linkWith.get(id)!);
           } else if (!visited.has(availableId)) {
             next.add(availableId);
             visited.add(availableId);

package/src/drivers/pframe/query/query_spec.ts

@@ -54,7 +54,7 @@ type ColumnIdAndSpec = {
  * {
  *   entry: querySpec,
  *   qualifications: [
- *     { axis: { name: 'sample' }, additionalDomains: { ... } }
+ *     { axis: { name: 'sample' }, contextDomain: { ... } }
  *   ]
  * }
  */
@@ -64,7 +64,7 @@ export type SpecQueryJoinEntry<C = PObjectId> = QueryJoinEntry<SpecQuery<C>> & {
     /** Axis selector identifying which axis to qualify */
     axis: SingleAxisSelector;
     /** Additional domain constraints for this axis */
-    additionalDomains: Domain;
+    contextDomain: Domain;
   }[];
 };
 

package/src/drivers/pframe/query/utils.test.ts

@@ -242,8 +242,8 @@ describe("sortSpecQuery", () => {
         {
           entry: pcol("a"),
           qualifications: [
-            { axis: { name: "z" }, additionalDomains: {} },
-            { axis: { name: "a" }, additionalDomains: {} },
+            { axis: { name: "z" }, contextDomain: {} },
+            { axis: { name: "a" }, contextDomain: {} },
           ],
         },
       ],

package/src/drivers/pframe/spec/anchored.ts

@@ -32,16 +32,19 @@ function domainKey(key: string, value: string): string {
  */
 export class AnchoredIdDeriver {
   private readonly domains = new Map<string, string>();
+  private readonly contextDomains = new Map<string, string>();
   private readonly axes = new Map<string, AnchorAxisRefByIdx>();
   /**
    * Domain packs are used to group domain keys that can be anchored to the same anchor
    * This is used to optimize the lookup of domain anchors
    */
   private readonly domainPacks: string[][] = [];
+  private readonly contextDomainPacks: string[][] = [];
   /**
    * Maps domain packs to anchors
    */
   private readonly domainPackToAnchor = new Map<string, string>();
+  private readonly contextDomainPackToAnchor = new Map<string, string>();
 
   /**
    * Creates a new anchor context from a set of anchor column specifications
@@ -68,6 +71,18 @@ export class AnchoredIdDeriver {
           this.domains.set(key, anchorId);
         }
       }
+      if (spec.contextDomain !== undefined) {
+        const contextDomainEntries = Object.entries(spec.contextDomain);
+        contextDomainEntries.sort((a, b) => a[0].localeCompare(b[0]));
+
+        this.contextDomainPackToAnchor.set(JSON.stringify(contextDomainEntries), anchorId);
+        this.contextDomainPacks.push(contextDomainEntries.map(([dKey]) => dKey));
+
+        for (const [dKey, dValue] of contextDomainEntries) {
+          const key = domainKey(dKey, dValue);
+          this.contextDomains.set(key, anchorId);
+        }
+      }
     }
   }
 
@@ -121,6 +136,32 @@ export class AnchoredIdDeriver {
       result.domain[dKey] = anchorId ? { anchor: anchorId } : dValue;
     }
 
+    let skipContextDomains: Set<string> | undefined = undefined;
+    if (spec.contextDomain !== undefined) {
+      outer: for (const contextDomainPack of this.contextDomainPacks) {
+        const dAnchor: string[][] = [];
+        for (const domainKey of contextDomainPack) {
+          const dValue = spec.contextDomain[domainKey];
+          if (dValue !== undefined) dAnchor.push([domainKey, dValue]);
+          else break outer;
+        }
+        const contextDomainAnchor = this.contextDomainPackToAnchor.get(JSON.stringify(dAnchor));
+        if (contextDomainAnchor !== undefined) {
+          result.contextDomainAnchor = contextDomainAnchor;
+          skipContextDomains = new Set(contextDomainPack);
+          break;
+        }
+      }
+    }
+
+    for (const [dKey, dValue] of Object.entries(spec.contextDomain ?? {})) {
+      if (skipContextDomains !== undefined && skipContextDomains.has(dKey)) continue;
+      const key = domainKey(dKey, dValue);
+      const anchorId = this.contextDomains.get(key);
+      result.contextDomain ??= {};
+      result.contextDomain[dKey] = anchorId ? { anchor: anchorId } : dValue;
+    }
+
     result.axes = spec.axesSpec.map((axis) => {
       const key = axisKey(axis);
       const anchorAxisRef = this.axes.get(key);
@@ -239,6 +280,38 @@ export function resolveAnchors(
     result.domain = resolvedDomain;
   }
 
+  if (result.contextDomainAnchor !== undefined) {
+    const anchorSpec = anchors[result.contextDomainAnchor];
+    if (!anchorSpec) throw new Error(`Anchor "${result.contextDomainAnchor}" not found`);
+
+    const anchorContextDomains = anchorSpec.contextDomain || {};
+    result.contextDomain = { ...anchorContextDomains, ...result.contextDomain };
+    delete result.contextDomainAnchor;
+  }
+
+  if (result.contextDomain) {
+    const resolvedContextDomain: Record<string, string> = {};
+    for (const [key, value] of Object.entries(result.contextDomain)) {
+      if (typeof value === "string") {
+        resolvedContextDomain[key] = value;
+      } else {
+        // It's an AnchorDomainRef
+        const anchorSpec = anchors[value.anchor];
+        if (!anchorSpec)
+          throw new Error(`Anchor "${value.anchor}" not found for contextDomain key "${key}"`);
+
+        if (!anchorSpec.contextDomain || anchorSpec.contextDomain[key] === undefined) {
+          if (!ignoreMissingDomains)
+            throw new Error(`Context domain key "${key}" not found in anchor "${value.anchor}"`);
+          continue;
+        }
+
+        resolvedContextDomain[key] = anchorSpec.contextDomain[key];
+      }
+    }
+    result.contextDomain = resolvedContextDomain;
+  }
+
   if (result.axes) result.axes = result.axes.map((axis) => resolveAxisReference(anchors, axis));
 
   return result as PColumnSelector;

package/src/drivers/pframe/spec/native_id.ts

@@ -10,6 +10,7 @@ export function deriveNativeId(spec: PObjectSpec): NativePObjectId {
     name: spec.name,
   };
   if (spec.domain !== undefined) result.domain = spec.domain;
+  if (spec.contextDomain !== undefined) result.contextDomain = spec.contextDomain;
   if (isPColumnSpec(spec)) result.axesSpec = getAxesId(spec.axesSpec);
   return canonicalize(result) as NativePObjectId;
 }

package/src/drivers/pframe/spec/selectors.ts

@@ -35,6 +35,13 @@ export interface AxisSelector {
    * An axis with additional domain entries not present in this selector will still match.
    */
   domain?: Record<string, string>;
+
+  /**
+   * Optional context domain key-value pairs to match against.
+   * Context domains are matched by kinship rules (subset/superset/overlap) rather than exact equality.
+   * When specified, an axis will match only if it contains all the key-value pairs defined here.
+   */
+  contextDomain?: Record<string, string>;
 }
 
 /** Single axis selector */
@@ -112,6 +119,11 @@ export interface AnchoredPColumnSelector {
   /** Optional domain values to match, can include anchored references, if domainAnchor is specified,
    * interpreted as additional domains to domain from the anchor */
   domain?: Record<string, ADomain>;
+  /** If specified, the context domain values must be anchored to this anchor */
+  contextDomainAnchor?: string;
+  /** Optional context domain values to match, can include anchored references, if contextDomainAnchor is specified,
+   * interpreted as additional context domains to context domain from the anchor */
+  contextDomain?: Record<string, ADomain>;
   /** Optional axes to match, can include anchored references */
   axes?: AAxisSelector[];
   /** When true, allows matching if only a subset of axes match */
@@ -130,6 +142,8 @@ export interface AnchoredPColumnSelector {
 export interface PColumnSelector extends AnchoredPColumnSelector {
   domainAnchor?: never;
   domain?: Record<string, string>;
+  contextDomainAnchor?: never;
+  contextDomain?: Record<string, string>;
   axes?: AxisSelector[];
 }
 
@@ -193,6 +207,13 @@ export function matchAxis(selector: AxisSelector, axis: AxisId): boolean {
       if (axisDomain[key] !== value) return false;
   }
 
+  // Match contextDomain if specified
+  if (selector.contextDomain !== undefined) {
+    const axisContextDomain = axis.contextDomain || {};
+    for (const [key, value] of Object.entries(selector.contextDomain))
+      if (axisContextDomain[key] !== value) return false;
+  }
+
   return true;
 }
 
@@ -227,6 +248,13 @@ export function matchPColumn(pcolumn: PColumnSpec, selector: PColumnSelector): b
       if (columnDomain[key] !== value) return false;
   }
 
+  // Match contextDomain if specified
+  if (selector.contextDomain !== undefined) {
+    const columnContextDomain = pcolumn.contextDomain || {};
+    for (const [key, value] of Object.entries(selector.contextDomain))
+      if (columnContextDomain[key] !== value) return false;
+  }
+
   // Match axes if specified
   if (selector.axes !== undefined) {
     const pcolumnAxes = pcolumn.axesSpec.map(getAxisId);