@milaboratories/pl-model-common 1.25.3 → 1.26.0

package/dist/drivers/pframe/spec/selectors.js.map

@@ -1 +1 @@
-{"version":3,"file":"selectors.js","names":[],"sources":["../../../../src/drivers/pframe/spec/selectors.ts"],"sourcesContent":["import { isPColumnSpec, type PObjectSpec } from \"../../../pool\";\nimport type { AxisId, AxisValueType, Domain, PColumnSpec, ValueType } from \"./spec\";\nimport { getAxisId } from \"./spec\";\n\n/**\n * Defines a pattern for matching axes within the PFrame data model.\n *\n * AxisSelector provides a flexible way to identify axes based on their\n * properties. All fields are optional, allowing for partial matching.\n * When multiple properties are specified, all must match for an axis\n * to be selected (logical AND).\n *\n * This interface is used in various selection and matching operations\n * throughout the PFrame system, such as column queries and axis lookups.\n */\nexport interface AxisSelector {\n  /**\n   * Optional value type to match against.\n   * When specified, only axes with this exact type will match.\n   * Can be a single type or an array of types to match against any of them.\n   * Valid types include: 'Int', 'Long', 'Float', 'Double', 'String', 'Bytes'.\n   */\n  type?: ValueType | ValueType[];\n\n  /**\n   * Optional name to match against.\n   * When specified, only axes with this exact name will match.\n   */\n  name?: string;\n\n  /**\n   * Optional domain key-value pairs to match against.\n   * Domains provide additional context to uniquely identify an axis beyond its name and type.\n   * When specified, an axis will match only if it contains all the key-value pairs defined here.\n   * An axis with additional domain entries not present in this selector will still match.\n   */\n  domain?: Record<string, string>;\n}\n\n/** Single axis selector */\nexport interface SingleAxisSelector {\n  /** Axis name (required) */\n  name: string;\n  /** Axis type (optional) */\n  type?: AxisValueType;\n  /** Domain requirements (optional) */\n  domain?: Domain;\n  /** Parent axes requirements (optional) */\n  parentAxes?: SingleAxisSelector[];\n}\n\n/**\n * Reference to an axis by its numerical index within the anchor column's axes array\n * Format: [anchorId, axisIndex]\n */\nexport type AnchorAxisRefByIdx = { anchor: string; idx: number };\n\n/**\n * Reference to an axis by its name within the anchor column\n * Format: [anchorId, axisName]\n */\nexport type AnchorAxisRefByName = { anchor: string; name: string };\n\n/**\n * Reference to an axis using an AxisId matcher within the anchor\n * Format: [anchorId, axisMatcher]\n */\nexport type AnchorAxisRefByMatcher = { anchor: string; id: AxisId };\n\n/**\n * Basic anchor axis reference that can be either by index or a direct AxisId\n */\nexport type AnchorAxisIdOrRefBasic = AnchorAxisRefByIdx | AxisId;\n\n/** Union of all possible ways to reference an axis in an anchored context  */\nexport type AnchorAxisRef = AnchorAxisRefByIdx | AnchorAxisRefByName | AnchorAxisRefByMatcher;\n\n/** Reference to a domain value through an anchor */\nexport type AnchorDomainRef = { anchor: string };\n\n/**\n * Domain value that can be either a direct string value or a reference to a domain through an anchor\n * Used to establish domain context that can be resolved relative to other anchored columns\n */\nexport type ADomain = string | AnchorDomainRef;\n/**\n * Axis identifier that can be either a direct AxisId or a reference to an axis through an anchor\n * Allows referring to axes in a way that can be resolved in different contexts\n */\nexport type AAxisSelector = AxisSelector | AnchorAxisRef;\n\n/**\n * Match resolution strategy for PColumns\n * Specifies how to handle when multiple columns match the criteria\n * (default is \"expectSingle\")\n */\nexport type AnchoredColumnMatchStrategy = \"expectSingle\" | \"expectMultiple\" | \"takeFirst\";\n\n/**\n * Matcher for PColumns in an anchored context\n * Supports partial matching on axes, allowing for flexible column discovery\n */\nexport interface AnchoredPColumnSelector {\n  /** Optional name of the column to match; can't be used together with namePattern */\n  name?: string;\n  /** Optional regexp pattern for column name matching; can't be used together with name */\n  namePattern?: string;\n  /** Optional value type to match. If an array is provided, matches if the column's type is any of the specified types */\n  type?: ValueType | ValueType[];\n  /** If specified, the domain values must be anchored to this anchor */\n  domainAnchor?: string;\n  /** Optional domain values to match, can include anchored references, if domainAnchor is specified,\n   * interpreted as additional domains to domain from the anchor */\n  domain?: Record<string, ADomain>;\n  /** Optional axes to match, can include anchored references */\n  axes?: AAxisSelector[];\n  /** When true, allows matching if only a subset of axes match */\n  partialAxesMatch?: boolean;\n  /** Optional annotations to match with exact values */\n  annotations?: Record<string, string>;\n  /** Optional annotation patterns to match with regex patterns */\n  annotationPatterns?: Record<string, string>;\n  /** Match resolution strategy, default is \"expectSingle\" */\n  matchStrategy?: AnchoredColumnMatchStrategy;\n}\n\n/**\n * Matcher for PColumns in a non-anchored context\n */\nexport interface PColumnSelector extends AnchoredPColumnSelector {\n  domainAnchor?: never;\n  domain?: Record<string, string>;\n  axes?: AxisSelector[];\n}\n\n/**\n * Strict identifier for PColumns in an anchored context\n * Unlike APColumnMatcher, this requires exact matches on domain and axes\n */\nexport interface AnchoredPColumnId extends AnchoredPColumnSelector {\n  /** Name is required for exact column identification */\n  name: string;\n  /** No namePattern in ID */\n  namePattern?: never;\n  /** Type is not used in exact column identification */\n  type?: never;\n  /** Full axes specification using only basic references */\n  axes: AnchorAxisIdOrRefBasic[];\n  /** Partial axes matching is not allowed for exact identification */\n  partialAxesMatch?: never;\n  /** Annotations are not used in exact column identification */\n  annotations?: never;\n  /** Annotation patterns are not used in exact column identification */\n  annotationPatterns?: never;\n  /** \"Id\" implies single match strategy */\n  matchStrategy?: never;\n}\n\n/**\n * Checks if a given value is an anchored column identifier\n * @param id - The value to check\n * @returns True if the value is an anchored column identifier, false otherwise\n */\nexport function isAnchoredPColumnId(id: unknown): id is AnchoredPColumnId {\n  // basic check, can be extended if needed\n  return typeof id === \"object\" && id !== null && \"name\" in id && \"axes\" in id;\n}\n\n/**\n * Determines if an axis ID matches an axis selector.\n *\n * @param selector - The selector with criteria to match against\n * @param axis - The AxisId to check against the selector\n * @returns true if the AxisId matches all specified criteria in the selector, false otherwise\n */\nexport function matchAxis(selector: AxisSelector, axis: AxisId): boolean {\n  // Match name if specified\n  if (selector.name !== undefined && selector.name !== axis.name) return false;\n\n  // Match type if specified\n  if (selector.type !== undefined) {\n    if (Array.isArray(selector.type)) {\n      if (!selector.type.includes(axis.type)) return false;\n    } else if (selector.type !== axis.type) {\n      return false;\n    }\n  }\n\n  // Match domain if specified - using existing logic from matchAxisId\n  if (selector.domain !== undefined) {\n    const axisDomain = axis.domain || {};\n    for (const [key, value] of Object.entries(selector.domain))\n      if (axisDomain[key] !== value) return false;\n  }\n\n  return true;\n}\n\n/**\n * Determines if a given PColumnSpec matches a selector.\n *\n * @param pcolumn - The PColumnSpec to check against the selector\n * @param selector - The selector criteria to match against\n * @returns true if the PColumnSpec matches all criteria in the selector, false otherwise\n */\nexport function matchPColumn(pcolumn: PColumnSpec, selector: PColumnSelector): boolean {\n  // Match name if specified\n  if (selector.name !== undefined && pcolumn.name !== selector.name) return false;\n\n  // Match name pattern if specified\n  if (selector.namePattern !== undefined && !new RegExp(selector.namePattern).test(pcolumn.name))\n    return false;\n\n  // Match type if specified\n  if (selector.type !== undefined) {\n    if (Array.isArray(selector.type)) {\n      if (!selector.type.includes(pcolumn.valueType)) return false;\n    } else if (selector.type !== pcolumn.valueType) {\n      return false;\n    }\n  }\n\n  // Match domain if specified\n  if (selector.domain !== undefined) {\n    const columnDomain = pcolumn.domain || {};\n    for (const [key, value] of Object.entries(selector.domain))\n      if (columnDomain[key] !== value) return false;\n  }\n\n  // Match axes if specified\n  if (selector.axes !== undefined) {\n    const pcolumnAxes = pcolumn.axesSpec.map(getAxisId);\n\n    if (selector.partialAxesMatch) {\n      // For partial matching, all selector axes must match at least one column axis\n      for (const selectorAxis of selector.axes)\n        if (!pcolumnAxes.some((columnAxis) => matchAxis(selectorAxis, columnAxis))) return false;\n    } else {\n      // For exact matching, column must have the same number of axes and all must match\n      if (pcolumnAxes.length !== selector.axes.length) return false;\n\n      // Each selector axis must match a corresponding column axis\n      for (let i = 0; i < selector.axes.length; i++)\n        if (!matchAxis(selector.axes[i], pcolumnAxes[i])) return false;\n    }\n  }\n\n  // Match annotations if specified\n  if (selector.annotations !== undefined) {\n    const columnAnnotations = pcolumn.annotations || {};\n    for (const [key, value] of Object.entries(selector.annotations))\n      if (columnAnnotations[key] !== value) return false;\n  }\n\n  // Match annotation patterns if specified\n  if (selector.annotationPatterns !== undefined) {\n    const columnAnnotations = pcolumn.annotations || {};\n    for (const [key, pattern] of Object.entries(selector.annotationPatterns)) {\n      const value = columnAnnotations[key];\n      if (value === undefined || !new RegExp(pattern).test(value)) return false;\n    }\n  }\n\n  return true;\n}\n\n/**\n * Convert a predicate or array of selectors to a single predicate function\n * @param predicateOrSelectors - Either a function that takes a PColumnSpec and returns a boolean,\n *                              or an array of PColumnSelectors, or a single PColumnSelector\n * @returns A function that takes a PColumnSpec and returns a boolean\n */\nexport function selectorsToPredicate(\n  predicateOrSelectors: PColumnSelector | PColumnSelector[],\n): (spec: PObjectSpec) => boolean {\n  if (Array.isArray(predicateOrSelectors))\n    return (spec) =>\n      predicateOrSelectors.some((selector) => isPColumnSpec(spec) && matchPColumn(spec, selector));\n  else return (spec) => isPColumnSpec(spec) && matchPColumn(spec, predicateOrSelectors);\n}\n"],"mappings":";;;;;;;;;AAmKA,SAAgB,oBAAoB,IAAsC;AAExE,QAAO,OAAO,OAAO,YAAY,OAAO,QAAQ,UAAU,MAAM,UAAU;;;;;;;;;AAU5E,SAAgB,UAAU,UAAwB,MAAuB;AAEvE,KAAI,SAAS,SAAS,UAAa,SAAS,SAAS,KAAK,KAAM,QAAO;AAGvE,KAAI,SAAS,SAAS,QACpB;MAAI,MAAM,QAAQ,SAAS,KAAK,EAC9B;OAAI,CAAC,SAAS,KAAK,SAAS,KAAK,KAAK,CAAE,QAAO;aACtC,SAAS,SAAS,KAAK,KAChC,QAAO;;AAKX,KAAI,SAAS,WAAW,QAAW;EACjC,MAAM,aAAa,KAAK,UAAU,EAAE;AACpC,OAAK,MAAM,CAAC,KAAK,UAAU,OAAO,QAAQ,SAAS,OAAO,CACxD,KAAI,WAAW,SAAS,MAAO,QAAO;;AAG1C,QAAO;;;;;;;;;AAUT,SAAgB,aAAa,SAAsB,UAAoC;AAErF,KAAI,SAAS,SAAS,UAAa,QAAQ,SAAS,SAAS,KAAM,QAAO;AAG1E,KAAI,SAAS,gBAAgB,UAAa,CAAC,IAAI,OAAO,SAAS,YAAY,CAAC,KAAK,QAAQ,KAAK,CAC5F,QAAO;AAGT,KAAI,SAAS,SAAS,QACpB;MAAI,MAAM,QAAQ,SAAS,KAAK,EAC9B;OAAI,CAAC,SAAS,KAAK,SAAS,QAAQ,UAAU,CAAE,QAAO;aAC9C,SAAS,SAAS,QAAQ,UACnC,QAAO;;AAKX,KAAI,SAAS,WAAW,QAAW;EACjC,MAAM,eAAe,QAAQ,UAAU,EAAE;AACzC,OAAK,MAAM,CAAC,KAAK,UAAU,OAAO,QAAQ,SAAS,OAAO,CACxD,KAAI,aAAa,SAAS,MAAO,QAAO;;AAI5C,KAAI,SAAS,SAAS,QAAW;EAC/B,MAAM,cAAc,QAAQ,SAAS,IAAI,UAAU;AAEnD,MAAI,SAAS,kBAEX;QAAK,MAAM,gBAAgB,SAAS,KAClC,KAAI,CAAC,YAAY,MAAM,eAAe,UAAU,cAAc,WAAW,CAAC,CAAE,QAAO;SAChF;AAEL,OAAI,YAAY,WAAW,SAAS,KAAK,OAAQ,QAAO;AAGxD,QAAK,IAAI,IAAI,GAAG,IAAI,SAAS,KAAK,QAAQ,IACxC,KAAI,CAAC,UAAU,SAAS,KAAK,IAAI,YAAY,GAAG,CAAE,QAAO;;;AAK/D,KAAI,SAAS,gBAAgB,QAAW;EACtC,MAAM,oBAAoB,QAAQ,eAAe,EAAE;AACnD,OAAK,MAAM,CAAC,KAAK,UAAU,OAAO,QAAQ,SAAS,YAAY,CAC7D,KAAI,kBAAkB,SAAS,MAAO,QAAO;;AAIjD,KAAI,SAAS,uBAAuB,QAAW;EAC7C,MAAM,oBAAoB,QAAQ,eAAe,EAAE;AACnD,OAAK,MAAM,CAAC,KAAK,YAAY,OAAO,QAAQ,SAAS,mBAAmB,EAAE;GACxE,MAAM,QAAQ,kBAAkB;AAChC,OAAI,UAAU,UAAa,CAAC,IAAI,OAAO,QAAQ,CAAC,KAAK,MAAM,CAAE,QAAO;;;AAIxE,QAAO;;;;;;;;AAST,SAAgB,qBACd,sBACgC;AAChC,KAAI,MAAM,QAAQ,qBAAqB,CACrC,SAAQ,SACN,qBAAqB,MAAM,aAAa,cAAc,KAAK,IAAI,aAAa,MAAM,SAAS,CAAC;KAC3F,SAAQ,SAAS,cAAc,KAAK,IAAI,aAAa,MAAM,qBAAqB"}
+{"version":3,"file":"selectors.js","names":[],"sources":["../../../../src/drivers/pframe/spec/selectors.ts"],"sourcesContent":["import { isPColumnSpec, type PObjectSpec } from \"../../../pool\";\nimport type { AxisId, AxisValueType, Domain, PColumnSpec, ValueType } from \"./spec\";\nimport { getAxisId } from \"./spec\";\n\n/**\n * Defines a pattern for matching axes within the PFrame data model.\n *\n * AxisSelector provides a flexible way to identify axes based on their\n * properties. All fields are optional, allowing for partial matching.\n * When multiple properties are specified, all must match for an axis\n * to be selected (logical AND).\n *\n * This interface is used in various selection and matching operations\n * throughout the PFrame system, such as column queries and axis lookups.\n */\nexport interface AxisSelector {\n  /**\n   * Optional value type to match against.\n   * When specified, only axes with this exact type will match.\n   * Can be a single type or an array of types to match against any of them.\n   * Valid types include: 'Int', 'Long', 'Float', 'Double', 'String', 'Bytes'.\n   */\n  type?: ValueType | ValueType[];\n\n  /**\n   * Optional name to match against.\n   * When specified, only axes with this exact name will match.\n   */\n  name?: string;\n\n  /**\n   * Optional domain key-value pairs to match against.\n   * Domains provide additional context to uniquely identify an axis beyond its name and type.\n   * When specified, an axis will match only if it contains all the key-value pairs defined here.\n   * An axis with additional domain entries not present in this selector will still match.\n   */\n  domain?: Record<string, string>;\n\n  /**\n   * Optional context domain key-value pairs to match against.\n   * Context domains are matched by kinship rules (subset/superset/overlap) rather than exact equality.\n   * When specified, an axis will match only if it contains all the key-value pairs defined here.\n   */\n  contextDomain?: Record<string, string>;\n}\n\n/** Single axis selector */\nexport interface SingleAxisSelector {\n  /** Axis name (required) */\n  name: string;\n  /** Axis type (optional) */\n  type?: AxisValueType;\n  /** Domain requirements (optional) */\n  domain?: Domain;\n  /** Parent axes requirements (optional) */\n  parentAxes?: SingleAxisSelector[];\n}\n\n/**\n * Reference to an axis by its numerical index within the anchor column's axes array\n * Format: [anchorId, axisIndex]\n */\nexport type AnchorAxisRefByIdx = { anchor: string; idx: number };\n\n/**\n * Reference to an axis by its name within the anchor column\n * Format: [anchorId, axisName]\n */\nexport type AnchorAxisRefByName = { anchor: string; name: string };\n\n/**\n * Reference to an axis using an AxisId matcher within the anchor\n * Format: [anchorId, axisMatcher]\n */\nexport type AnchorAxisRefByMatcher = { anchor: string; id: AxisId };\n\n/**\n * Basic anchor axis reference that can be either by index or a direct AxisId\n */\nexport type AnchorAxisIdOrRefBasic = AnchorAxisRefByIdx | AxisId;\n\n/** Union of all possible ways to reference an axis in an anchored context  */\nexport type AnchorAxisRef = AnchorAxisRefByIdx | AnchorAxisRefByName | AnchorAxisRefByMatcher;\n\n/** Reference to a domain value through an anchor */\nexport type AnchorDomainRef = { anchor: string };\n\n/**\n * Domain value that can be either a direct string value or a reference to a domain through an anchor\n * Used to establish domain context that can be resolved relative to other anchored columns\n */\nexport type ADomain = string | AnchorDomainRef;\n/**\n * Axis identifier that can be either a direct AxisId or a reference to an axis through an anchor\n * Allows referring to axes in a way that can be resolved in different contexts\n */\nexport type AAxisSelector = AxisSelector | AnchorAxisRef;\n\n/**\n * Match resolution strategy for PColumns\n * Specifies how to handle when multiple columns match the criteria\n * (default is \"expectSingle\")\n */\nexport type AnchoredColumnMatchStrategy = \"expectSingle\" | \"expectMultiple\" | \"takeFirst\";\n\n/**\n * Matcher for PColumns in an anchored context\n * Supports partial matching on axes, allowing for flexible column discovery\n */\nexport interface AnchoredPColumnSelector {\n  /** Optional name of the column to match; can't be used together with namePattern */\n  name?: string;\n  /** Optional regexp pattern for column name matching; can't be used together with name */\n  namePattern?: string;\n  /** Optional value type to match. If an array is provided, matches if the column's type is any of the specified types */\n  type?: ValueType | ValueType[];\n  /** If specified, the domain values must be anchored to this anchor */\n  domainAnchor?: string;\n  /** Optional domain values to match, can include anchored references, if domainAnchor is specified,\n   * interpreted as additional domains to domain from the anchor */\n  domain?: Record<string, ADomain>;\n  /** If specified, the context domain values must be anchored to this anchor */\n  contextDomainAnchor?: string;\n  /** Optional context domain values to match, can include anchored references, if contextDomainAnchor is specified,\n   * interpreted as additional context domains to context domain from the anchor */\n  contextDomain?: Record<string, ADomain>;\n  /** Optional axes to match, can include anchored references */\n  axes?: AAxisSelector[];\n  /** When true, allows matching if only a subset of axes match */\n  partialAxesMatch?: boolean;\n  /** Optional annotations to match with exact values */\n  annotations?: Record<string, string>;\n  /** Optional annotation patterns to match with regex patterns */\n  annotationPatterns?: Record<string, string>;\n  /** Match resolution strategy, default is \"expectSingle\" */\n  matchStrategy?: AnchoredColumnMatchStrategy;\n}\n\n/**\n * Matcher for PColumns in a non-anchored context\n */\nexport interface PColumnSelector extends AnchoredPColumnSelector {\n  domainAnchor?: never;\n  domain?: Record<string, string>;\n  contextDomainAnchor?: never;\n  contextDomain?: Record<string, string>;\n  axes?: AxisSelector[];\n}\n\n/**\n * Strict identifier for PColumns in an anchored context\n * Unlike APColumnMatcher, this requires exact matches on domain and axes\n */\nexport interface AnchoredPColumnId extends AnchoredPColumnSelector {\n  /** Name is required for exact column identification */\n  name: string;\n  /** No namePattern in ID */\n  namePattern?: never;\n  /** Type is not used in exact column identification */\n  type?: never;\n  /** Full axes specification using only basic references */\n  axes: AnchorAxisIdOrRefBasic[];\n  /** Partial axes matching is not allowed for exact identification */\n  partialAxesMatch?: never;\n  /** Annotations are not used in exact column identification */\n  annotations?: never;\n  /** Annotation patterns are not used in exact column identification */\n  annotationPatterns?: never;\n  /** \"Id\" implies single match strategy */\n  matchStrategy?: never;\n}\n\n/**\n * Checks if a given value is an anchored column identifier\n * @param id - The value to check\n * @returns True if the value is an anchored column identifier, false otherwise\n */\nexport function isAnchoredPColumnId(id: unknown): id is AnchoredPColumnId {\n  // basic check, can be extended if needed\n  return typeof id === \"object\" && id !== null && \"name\" in id && \"axes\" in id;\n}\n\n/**\n * Determines if an axis ID matches an axis selector.\n *\n * @param selector - The selector with criteria to match against\n * @param axis - The AxisId to check against the selector\n * @returns true if the AxisId matches all specified criteria in the selector, false otherwise\n */\nexport function matchAxis(selector: AxisSelector, axis: AxisId): boolean {\n  // Match name if specified\n  if (selector.name !== undefined && selector.name !== axis.name) return false;\n\n  // Match type if specified\n  if (selector.type !== undefined) {\n    if (Array.isArray(selector.type)) {\n      if (!selector.type.includes(axis.type)) return false;\n    } else if (selector.type !== axis.type) {\n      return false;\n    }\n  }\n\n  // Match domain if specified - using existing logic from matchAxisId\n  if (selector.domain !== undefined) {\n    const axisDomain = axis.domain || {};\n    for (const [key, value] of Object.entries(selector.domain))\n      if (axisDomain[key] !== value) return false;\n  }\n\n  // Match contextDomain if specified\n  if (selector.contextDomain !== undefined) {\n    const axisContextDomain = axis.contextDomain || {};\n    for (const [key, value] of Object.entries(selector.contextDomain))\n      if (axisContextDomain[key] !== value) return false;\n  }\n\n  return true;\n}\n\n/**\n * Determines if a given PColumnSpec matches a selector.\n *\n * @param pcolumn - The PColumnSpec to check against the selector\n * @param selector - The selector criteria to match against\n * @returns true if the PColumnSpec matches all criteria in the selector, false otherwise\n */\nexport function matchPColumn(pcolumn: PColumnSpec, selector: PColumnSelector): boolean {\n  // Match name if specified\n  if (selector.name !== undefined && pcolumn.name !== selector.name) return false;\n\n  // Match name pattern if specified\n  if (selector.namePattern !== undefined && !new RegExp(selector.namePattern).test(pcolumn.name))\n    return false;\n\n  // Match type if specified\n  if (selector.type !== undefined) {\n    if (Array.isArray(selector.type)) {\n      if (!selector.type.includes(pcolumn.valueType)) return false;\n    } else if (selector.type !== pcolumn.valueType) {\n      return false;\n    }\n  }\n\n  // Match domain if specified\n  if (selector.domain !== undefined) {\n    const columnDomain = pcolumn.domain || {};\n    for (const [key, value] of Object.entries(selector.domain))\n      if (columnDomain[key] !== value) return false;\n  }\n\n  // Match contextDomain if specified\n  if (selector.contextDomain !== undefined) {\n    const columnContextDomain = pcolumn.contextDomain || {};\n    for (const [key, value] of Object.entries(selector.contextDomain))\n      if (columnContextDomain[key] !== value) return false;\n  }\n\n  // Match axes if specified\n  if (selector.axes !== undefined) {\n    const pcolumnAxes = pcolumn.axesSpec.map(getAxisId);\n\n    if (selector.partialAxesMatch) {\n      // For partial matching, all selector axes must match at least one column axis\n      for (const selectorAxis of selector.axes)\n        if (!pcolumnAxes.some((columnAxis) => matchAxis(selectorAxis, columnAxis))) return false;\n    } else {\n      // For exact matching, column must have the same number of axes and all must match\n      if (pcolumnAxes.length !== selector.axes.length) return false;\n\n      // Each selector axis must match a corresponding column axis\n      for (let i = 0; i < selector.axes.length; i++)\n        if (!matchAxis(selector.axes[i], pcolumnAxes[i])) return false;\n    }\n  }\n\n  // Match annotations if specified\n  if (selector.annotations !== undefined) {\n    const columnAnnotations = pcolumn.annotations || {};\n    for (const [key, value] of Object.entries(selector.annotations))\n      if (columnAnnotations[key] !== value) return false;\n  }\n\n  // Match annotation patterns if specified\n  if (selector.annotationPatterns !== undefined) {\n    const columnAnnotations = pcolumn.annotations || {};\n    for (const [key, pattern] of Object.entries(selector.annotationPatterns)) {\n      const value = columnAnnotations[key];\n      if (value === undefined || !new RegExp(pattern).test(value)) return false;\n    }\n  }\n\n  return true;\n}\n\n/**\n * Convert a predicate or array of selectors to a single predicate function\n * @param predicateOrSelectors - Either a function that takes a PColumnSpec and returns a boolean,\n *                              or an array of PColumnSelectors, or a single PColumnSelector\n * @returns A function that takes a PColumnSpec and returns a boolean\n */\nexport function selectorsToPredicate(\n  predicateOrSelectors: PColumnSelector | PColumnSelector[],\n): (spec: PObjectSpec) => boolean {\n  if (Array.isArray(predicateOrSelectors))\n    return (spec) =>\n      predicateOrSelectors.some((selector) => isPColumnSpec(spec) && matchPColumn(spec, selector));\n  else return (spec) => isPColumnSpec(spec) && matchPColumn(spec, predicateOrSelectors);\n}\n"],"mappings":";;;;;;;;;AAiLA,SAAgB,oBAAoB,IAAsC;AAExE,QAAO,OAAO,OAAO,YAAY,OAAO,QAAQ,UAAU,MAAM,UAAU;;;;;;;;;AAU5E,SAAgB,UAAU,UAAwB,MAAuB;AAEvE,KAAI,SAAS,SAAS,UAAa,SAAS,SAAS,KAAK,KAAM,QAAO;AAGvE,KAAI,SAAS,SAAS,QACpB;MAAI,MAAM,QAAQ,SAAS,KAAK,EAC9B;OAAI,CAAC,SAAS,KAAK,SAAS,KAAK,KAAK,CAAE,QAAO;aACtC,SAAS,SAAS,KAAK,KAChC,QAAO;;AAKX,KAAI,SAAS,WAAW,QAAW;EACjC,MAAM,aAAa,KAAK,UAAU,EAAE;AACpC,OAAK,MAAM,CAAC,KAAK,UAAU,OAAO,QAAQ,SAAS,OAAO,CACxD,KAAI,WAAW,SAAS,MAAO,QAAO;;AAI1C,KAAI,SAAS,kBAAkB,QAAW;EACxC,MAAM,oBAAoB,KAAK,iBAAiB,EAAE;AAClD,OAAK,MAAM,CAAC,KAAK,UAAU,OAAO,QAAQ,SAAS,cAAc,CAC/D,KAAI,kBAAkB,SAAS,MAAO,QAAO;;AAGjD,QAAO;;;;;;;;;AAUT,SAAgB,aAAa,SAAsB,UAAoC;AAErF,KAAI,SAAS,SAAS,UAAa,QAAQ,SAAS,SAAS,KAAM,QAAO;AAG1E,KAAI,SAAS,gBAAgB,UAAa,CAAC,IAAI,OAAO,SAAS,YAAY,CAAC,KAAK,QAAQ,KAAK,CAC5F,QAAO;AAGT,KAAI,SAAS,SAAS,QACpB;MAAI,MAAM,QAAQ,SAAS,KAAK,EAC9B;OAAI,CAAC,SAAS,KAAK,SAAS,QAAQ,UAAU,CAAE,QAAO;aAC9C,SAAS,SAAS,QAAQ,UACnC,QAAO;;AAKX,KAAI,SAAS,WAAW,QAAW;EACjC,MAAM,eAAe,QAAQ,UAAU,EAAE;AACzC,OAAK,MAAM,CAAC,KAAK,UAAU,OAAO,QAAQ,SAAS,OAAO,CACxD,KAAI,aAAa,SAAS,MAAO,QAAO;;AAI5C,KAAI,SAAS,kBAAkB,QAAW;EACxC,MAAM,sBAAsB,QAAQ,iBAAiB,EAAE;AACvD,OAAK,MAAM,CAAC,KAAK,UAAU,OAAO,QAAQ,SAAS,cAAc,CAC/D,KAAI,oBAAoB,SAAS,MAAO,QAAO;;AAInD,KAAI,SAAS,SAAS,QAAW;EAC/B,MAAM,cAAc,QAAQ,SAAS,IAAI,UAAU;AAEnD,MAAI,SAAS,kBAEX;QAAK,MAAM,gBAAgB,SAAS,KAClC,KAAI,CAAC,YAAY,MAAM,eAAe,UAAU,cAAc,WAAW,CAAC,CAAE,QAAO;SAChF;AAEL,OAAI,YAAY,WAAW,SAAS,KAAK,OAAQ,QAAO;AAGxD,QAAK,IAAI,IAAI,GAAG,IAAI,SAAS,KAAK,QAAQ,IACxC,KAAI,CAAC,UAAU,SAAS,KAAK,IAAI,YAAY,GAAG,CAAE,QAAO;;;AAK/D,KAAI,SAAS,gBAAgB,QAAW;EACtC,MAAM,oBAAoB,QAAQ,eAAe,EAAE;AACnD,OAAK,MAAM,CAAC,KAAK,UAAU,OAAO,QAAQ,SAAS,YAAY,CAC7D,KAAI,kBAAkB,SAAS,MAAO,QAAO;;AAIjD,KAAI,SAAS,uBAAuB,QAAW;EAC7C,MAAM,oBAAoB,QAAQ,eAAe,EAAE;AACnD,OAAK,MAAM,CAAC,KAAK,YAAY,OAAO,QAAQ,SAAS,mBAAmB,EAAE;GACxE,MAAM,QAAQ,kBAAkB;AAChC,OAAI,UAAU,UAAa,CAAC,IAAI,OAAO,QAAQ,CAAC,KAAK,MAAM,CAAE,QAAO;;;AAIxE,QAAO;;;;;;;;AAST,SAAgB,qBACd,sBACgC;AAChC,KAAI,MAAM,QAAQ,qBAAqB,CACrC,SAAQ,SACN,qBAAqB,MAAM,aAAa,cAAc,KAAK,IAAI,aAAa,MAAM,SAAS,CAAC;KAC3F,SAAQ,SAAS,cAAc,KAAK,IAAI,aAAa,MAAM,qBAAqB"}

package/dist/drivers/pframe/spec/spec.cjs

@@ -212,6 +212,9 @@ function normalizingAxesComparator(axis1, axis2) {
 	const domain1 = require_json.canonicalizeJson(axis1.domain ?? {});
 	const domain2 = require_json.canonicalizeJson(axis2.domain ?? {});
 	if (domain1 !== domain2) return domain1 < domain2 ? 1 : -1;
+	const contextDomain1 = require_json.canonicalizeJson(axis1.contextDomain ?? {});
+	const contextDomain2 = require_json.canonicalizeJson(axis2.contextDomain ?? {});
+	if (contextDomain1 !== contextDomain2) return contextDomain1 < contextDomain2 ? 1 : -1;
 	const parents1 = canonicalizeAxisWithParents(axis1);
 	const parents2 = canonicalizeAxisWithParents(axis2);
 	if (parents1 !== parents2) return parents1 < parents2 ? 1 : -1;
@@ -319,6 +322,7 @@ function getPColumnSpecId(spec) {
 		valueType: spec.valueType,
 		name: spec.name,
 		domain: spec.domain,
+		contextDomain: spec.contextDomain,
 		parentAxes: spec.parentAxes,
 		axesId: getAxesId(spec.axesSpec)
 	};
@@ -332,12 +336,13 @@ function getColumnIdAndSpec(column) {
 }
 /** Extracts axis ids from axis spec */
 function getAxisId(spec) {
-	const { type, name, domain } = spec;
+	const { type, name, domain, contextDomain } = spec;
 	const result = {
 		type,
 		name
 	};
 	if (domain && Object.entries(domain).length > 0) Object.assign(result, { domain });
+	if (contextDomain && Object.entries(contextDomain).length > 0) Object.assign(result, { contextDomain });
 	return result;
 }
 /** Extracts axes ids from axes spec array from column spec */
@@ -357,7 +362,7 @@ function matchDomain(query, target) {
 }
 /** Returns whether "match" axis id is compatible with the "query" */
 function matchAxisId(query, target) {
-	return query.name === target.name && matchDomain(query.domain, target.domain);
+	return query.name === target.name && matchDomain(query.domain, target.domain) && matchDomain(query.contextDomain, target.contextDomain);
 }
 function getTypeFromPColumnOrAxisSpec(spec) {
 	return "valueType" in spec ? spec.valueType : spec.type;

package/dist/drivers/pframe/spec/spec.cjs.map

@@ -1 +1 @@
-{"version":3,"file":"spec.cjs","names":["ensureError","z","canonicalizeJson"],"sources":["../../../../src/drivers/pframe/spec/spec.ts"],"sourcesContent":["import { ensureError } from \"../../../errors\";\nimport { canonicalizeJson, type CanonicalizedJson, type StringifiedJson } from \"../../../json\";\nimport type { PObject, PObjectId, PObjectSpec } from \"../../../pool\";\nimport { z } from \"zod\";\n\nexport const ValueType = {\n  Int: \"Int\",\n  Long: \"Long\",\n  Float: \"Float\",\n  Double: \"Double\",\n  String: \"String\",\n  Bytes: \"Bytes\",\n} as const;\n\nexport type AxisValueType = Extract<ValueType, \"Int\" | \"Long\" | \"String\">;\nexport type ColumnValueType = ValueType;\n\n/** PFrame columns and axes within them may store one of these types. */\nexport type ValueType = (typeof ValueType)[keyof typeof ValueType];\n\nexport type Metadata = Record<string, string>;\n\nexport function readMetadata<U extends Metadata, T extends keyof U = keyof U>(\n  metadata: Metadata | undefined,\n  key: T,\n): U[T] | undefined {\n  return (metadata as U | undefined)?.[key];\n}\n\ntype MetadataJsonImpl<M> = {\n  [P in keyof M as M[P] extends StringifiedJson ? P : never]: M[P] extends StringifiedJson<infer U>\n    ? z.ZodType<U>\n    : never;\n};\nexport type MetadataJson<M> = MetadataJsonImpl<Required<M>>;\n\nexport function readMetadataJsonOrThrow<M extends Metadata, T extends keyof MetadataJson<M>>(\n  metadata: Metadata | undefined,\n  metadataJson: MetadataJson<M>,\n  key: T,\n  methodNameInError: string = \"readMetadataJsonOrThrow\",\n): z.infer<MetadataJson<M>[T]> | undefined {\n  const json = readMetadata<M, T>(metadata, key);\n  if (json === undefined) return undefined;\n\n  const schema = metadataJson[key];\n  try {\n    const value = JSON.parse(json);\n    return schema.parse(value);\n  } catch (error: unknown) {\n    throw new Error(\n      `${methodNameInError} failed, ` +\n        `key: ${String(key)}, ` +\n        `value: ${json}, ` +\n        `error: ${ensureError(error)}`,\n    );\n  }\n}\n\nexport function readMetadataJson<M extends Metadata, T extends keyof MetadataJson<M>>(\n  metadata: Metadata | undefined,\n  metadataJson: MetadataJson<M>,\n  key: T,\n): z.infer<MetadataJson<M>[T]> | undefined {\n  try {\n    return readMetadataJsonOrThrow(metadata, metadataJson, key);\n  } catch {\n    return undefined; // treat invalid values as unset\n  }\n}\n\n/// Well-known domains\nexport const Domain = {\n  Alphabet: \"pl7.app/alphabet\",\n  BlockId: \"pl7.app/blockId\",\n  VDJ: {\n    Clustering: {\n      BlockId: \"pl7.app/vdj/clustering/blockId\",\n    },\n    ScClonotypeChain: {\n      Index: \"pl7.app/vdj/scClonotypeChain/index\",\n    },\n  },\n} as const;\n\nexport type Domain = Metadata &\n  Partial<{\n    [Domain.Alphabet]: \"nucleotide\" | \"aminoacid\" | (string & {});\n    [Domain.BlockId]: string;\n    [Domain.VDJ.ScClonotypeChain.Index]: \"primary\" | \"secondary\" | (string & {});\n  }>;\n\nexport type DomainJson = MetadataJson<Domain>;\nexport const DomainJson: DomainJson = {};\n\n/// Helper function for reading plain domain values\nexport function readDomain<T extends keyof Domain>(\n  spec: { domain?: Metadata | undefined } | undefined,\n  key: T,\n): Domain[T] | undefined {\n  return readMetadata<Domain, T>(spec?.domain, key);\n}\n\n/// Helper function for reading json-encoded domain values, throws on JSON parsing error\nexport function readDomainJsonOrThrow<T extends keyof DomainJson>(\n  spec: { domain?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<DomainJson[T]> | undefined {\n  return readMetadataJsonOrThrow<Domain, T>(spec?.domain, DomainJson, key, \"readDomainJsonOrThrow\");\n}\n\n/// Helper function for reading json-encoded domain values, returns undefined on JSON parsing error\nexport function readDomainJson<T extends keyof DomainJson>(\n  spec: { domain?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<DomainJson[T]> | undefined {\n  return readMetadataJson<Domain, T>(spec?.domain, DomainJson, key);\n}\n\n/// Well-known annotations\nexport const Annotation = {\n  AxisNature: \"pl7.app/axisNature\",\n  Alphabet: \"pl7.app/alphabet\",\n  Description: \"pl7.app/description\",\n  DiscreteValues: \"pl7.app/discreteValues\",\n  Format: \"pl7.app/format\",\n  Graph: {\n    Axis: {\n      HighCardinality: \"pl7.app/graph/axis/highCardinality\",\n      LowerLimit: \"pl7.app/graph/axis/lowerLimit\",\n      SymmetricRange: \"pl7.app/graph/axis/symmetricRange\",\n      UpperLimit: \"pl7.app/graph/axis/upperLimit\",\n    },\n    IsDenseAxis: \"pl7.app/graph/isDenseAxis\",\n    IsVirtual: \"pl7.app/graph/isVirtual\",\n    Palette: \"pl7.app/graph/palette\",\n    Thresholds: \"pl7.app/graph/thresholds\",\n    TreatAbsentValuesAs: \"pl7.app/graph/treatAbsentValuesAs\",\n  },\n  HideDataFromUi: \"pl7.app/hideDataFromUi\",\n  HideDataFromGraphs: \"pl7.app/hideDataFromGraphs\",\n  IsDiscreteFilter: \"pl7.app/isDiscreteFilter\",\n  IsAnchor: \"pl7.app/isAnchor\",\n  IsLinkerColumn: \"pl7.app/isLinkerColumn\",\n  IsScore: \"pl7.app/isScore\",\n  IsSubset: \"pl7.app/isSubset\",\n  Label: \"pl7.app/label\",\n  Max: \"pl7.app/max\",\n  Min: \"pl7.app/min\",\n  MultipliesBy: \"pl7.app/multipliesBy\",\n  Parents: \"pl7.app/parents\",\n  Score: {\n    DefaultCutoff: \"pl7.app/score/defaultCutoff\",\n    RankingOrder: \"pl7.app/score/rankingOrder\",\n  },\n  Sequence: {\n    Annotation: {\n      Mapping: \"pl7.app/sequence/annotation/mapping\",\n    },\n    IsAnnotation: \"pl7.app/sequence/isAnnotation\",\n  },\n  Table: {\n    FontFamily: \"pl7.app/table/fontFamily\",\n    OrderPriority: \"pl7.app/table/orderPriority\",\n    Visibility: \"pl7.app/table/visibility\",\n  },\n  Trace: \"pl7.app/trace\",\n  VDJ: {\n    IsAssemblingFeature: \"pl7.app/vdj/isAssemblingFeature\",\n    IsMainSequence: \"pl7.app/vdj/isMainSequence\",\n  },\n} as const;\n\nexport type Annotation = Metadata &\n  Partial<{\n    [Annotation.Alphabet]: \"nucleotide\" | \"aminoacid\" | (string & {});\n    [Annotation.AxisNature]: \"homogeneous\" | \"heterogeneous\" | \"scaleCompatible\" | (string & {});\n    [Annotation.Description]: string;\n    [Annotation.DiscreteValues]: StringifiedJson<number[]> | StringifiedJson<string[]>;\n    [Annotation.Format]: string;\n    [Annotation.Graph.Axis.HighCardinality]: StringifiedJson<boolean>;\n    [Annotation.Graph.Axis.LowerLimit]: StringifiedJson<number>;\n    [Annotation.Graph.Axis.SymmetricRange]: StringifiedJson<boolean>;\n    [Annotation.Graph.Axis.UpperLimit]: StringifiedJson<number>;\n    [Annotation.Graph.IsDenseAxis]: StringifiedJson<boolean>;\n    [Annotation.Graph.IsVirtual]: StringifiedJson<boolean>;\n    [Annotation.Graph.Palette]: StringifiedJson<{ mapping: Record<string, number>; name: string }>;\n    [Annotation.Graph.Thresholds]: StringifiedJson<\n      { columnId: { valueType: ValueType; name: string }; value: number }[]\n    >;\n    [Annotation.Graph.TreatAbsentValuesAs]: StringifiedJson<number>;\n    [Annotation.HideDataFromGraphs]: StringifiedJson<boolean>;\n    [Annotation.HideDataFromUi]: StringifiedJson<boolean>;\n    [Annotation.IsDiscreteFilter]: StringifiedJson<boolean>;\n    [Annotation.IsLinkerColumn]: StringifiedJson<boolean>;\n    [Annotation.IsSubset]: StringifiedJson<boolean>;\n    [Annotation.Label]: string;\n    [Annotation.Max]: StringifiedJson<number>;\n    [Annotation.Min]: StringifiedJson<number>;\n    [Annotation.MultipliesBy]: StringifiedJson<AxisSpec[\"name\"][]>;\n    [Annotation.Parents]: StringifiedJson<AxisSpec[\"name\"][]>;\n    [Annotation.Sequence.Annotation.Mapping]: StringifiedJson<Record<string, string>>;\n    [Annotation.Sequence.IsAnnotation]: StringifiedJson<boolean>;\n    [Annotation.Table.FontFamily]: string;\n    [Annotation.Table.OrderPriority]: StringifiedJson<number>;\n    [Annotation.Table.Visibility]: \"hidden\" | \"optional\" | (string & {});\n    [Annotation.Trace]: StringifiedJson<Record<string, unknown>>;\n    [Annotation.VDJ.IsAssemblingFeature]: StringifiedJson<boolean>;\n  }>;\n\n// export const AxisSpec = z.object({\n//   type: z.nativeEnum(ValueType),\n//   name: z.string(),\n//   domain: z.record(z.string(), z.string()).optional(),\n//   annotations: z.record(z.string(), z.string()).optional(),\n//   parentAxes: z.array(z.number()).optional(),\n// }).passthrough();\n//\n// type Expect<T extends true> = T;\n// type Equal<X, Y> =\n// (<T>() => T extends X ? 1 : 2) extends (<T>() => T extends Y ? 1 : 2) ? true : false;\n//\n// type _test = Expect<Equal<\n//   Readonly<z.infer<typeof AxisSpec>>,\n//   Readonly<AxisSpec & Record<string, unknown>>\n// >>;\n\nexport type AnnotationJson = MetadataJson<Annotation>;\n\nconst ValueTypeSchema = z.enum([\"Int\", \"Long\", \"Float\", \"Double\", \"String\"] as const);\nexport const AnnotationJson: AnnotationJson = {\n  [Annotation.DiscreteValues]: z.array(z.string()).or(z.array(z.number())),\n  [Annotation.Graph.Axis.HighCardinality]: z.boolean(),\n  [Annotation.Graph.Axis.LowerLimit]: z.number(),\n  [Annotation.Graph.Axis.UpperLimit]: z.number(),\n  [Annotation.Graph.Axis.SymmetricRange]: z.boolean(),\n  [Annotation.Graph.IsDenseAxis]: z.boolean(),\n  [Annotation.Graph.Palette]: z.object({ mapping: z.record(z.number()), name: z.string() }),\n  [Annotation.Graph.Thresholds]: z.array(\n    z.object({\n      columnId: z.object({ valueType: ValueTypeSchema, name: z.string() }),\n      value: z.number(),\n    }),\n  ),\n  [Annotation.Graph.TreatAbsentValuesAs]: z.number(),\n  [Annotation.Graph.IsVirtual]: z.boolean(),\n  [Annotation.HideDataFromUi]: z.boolean(),\n  [Annotation.HideDataFromGraphs]: z.boolean(),\n  [Annotation.IsDiscreteFilter]: z.boolean(),\n  [Annotation.IsLinkerColumn]: z.boolean(),\n  [Annotation.IsSubset]: z.boolean(),\n  [Annotation.Max]: z.number(),\n  [Annotation.Min]: z.number(),\n  [Annotation.MultipliesBy]: z.array(z.string()),\n  [Annotation.Parents]: z.array(z.string()),\n  [Annotation.Sequence.Annotation.Mapping]: z.record(z.string(), z.string()),\n  [Annotation.Sequence.IsAnnotation]: z.boolean(),\n  [Annotation.Table.OrderPriority]: z.number(),\n  [Annotation.Trace]: z.record(z.string(), z.unknown()),\n  [Annotation.VDJ.IsAssemblingFeature]: z.boolean(),\n};\n\n/// Helper function for reading plain annotation values\nexport function readAnnotation<T extends keyof Annotation>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): Annotation[T] | undefined {\n  return readMetadata<Annotation, T>(spec?.annotations, key);\n}\n\n/// Helper function for reading json-encoded annotation values, throws on JSON parsing error\nexport function readAnnotationJsonOrThrow<T extends keyof AnnotationJson>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<AnnotationJson[T]> | undefined {\n  return readMetadataJsonOrThrow<Annotation, T>(\n    spec?.annotations,\n    AnnotationJson,\n    key,\n    \"readAnnotationJsonOrThrow\",\n  );\n}\n\n/// Helper function for reading json-encoded annotation values, returns undefined on JSON parsing error\nexport function readAnnotationJson<T extends keyof AnnotationJson>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<AnnotationJson[T]> | undefined {\n  return readMetadataJson<Annotation, T>(spec?.annotations, AnnotationJson, key);\n}\n\nexport function isLinkerColumn(column: PColumnSpec): boolean {\n  return !!readAnnotationJson(column, Annotation.IsLinkerColumn);\n}\n\n/**\n * Specification of an individual axis.\n *\n * Each axis is a part of a composite key that addresses data inside the PColumn.\n *\n * Each record inside a PColumn is addressed by a unique tuple of values set for\n * all the axes specified in the column spec.\n */\nexport type AxisSpec = {\n  /** Type of the axis value. Should not use non-key types like float or double. */\n  readonly type: ValueType;\n\n  /** Name of the axis */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** Any additional information attached to the axis that does not affect its\n   * identifier */\n  readonly annotations?: Record<string, string>;\n\n  /**\n   * Parent axes provide contextual grouping for the axis in question, establishing\n   * a hierarchy where the current axis is dependent on one or more axes for its\n   * full definition and meaning. For instance, in a data structure where each\n   * \"container\" axis may contain multiple \"item\" axes, the `item` axis would\n   * list the index of the `container` axis in this field to denote its dependency.\n   *\n   * This means that the identity or significance of the `item` axis is only\n   * interpretable when combined with its parent `container` axis. An `item` axis\n   * index by itself may be non-unique and only gains uniqueness within the context\n   * of its parent `container`. Therefore, the `parentAxes` field is essential for\n   * mapping these relationships and ensuring data coherence across nested or\n   * multi-level data models.\n   *\n   * A list of zero-based indices of parent axes in the overall axes specification\n   * from the column spec. Each index corresponds to the position of a parent axis\n   * in the list that defines the structure of the data model.\n   */\n  readonly parentAxes?: number[];\n};\n\n/** Parents are specs, not indexes; normalized axis can be used considering its parents independently from column */\nexport interface AxisSpecNormalized extends Omit<AxisSpec, \"parentAxes\"> {\n  parentAxesSpec: AxisSpecNormalized[];\n}\n\n/** Tree: axis is a root, its parents are children */\nexport type AxisTree = {\n  axis: AxisSpecNormalized;\n  children: AxisTree[]; // parents\n};\n\nfunction makeAxisTree(axis: AxisSpecNormalized): AxisTree {\n  return { axis, children: [] };\n}\n\n/** Build tree by axis parents annotations */\nexport function getAxesTree(rootAxis: AxisSpecNormalized): AxisTree {\n  const root = makeAxisTree(rootAxis);\n  let nodesQ = [root];\n  while (nodesQ.length) {\n    const nextNodes: AxisTree[] = [];\n    for (const node of nodesQ) {\n      node.children = node.axis.parentAxesSpec.map(makeAxisTree);\n      nextNodes.push(...node.children);\n    }\n    nodesQ = nextNodes;\n  }\n  return root;\n}\n\n/** Get set of canonicalized axisIds from axisTree */\nexport function getSetFromAxisTree(tree: AxisTree): Set<CanonicalizedJson<AxisId>> {\n  const set = new Set([canonicalizeJson(getAxisId(tree.axis))]);\n  let nodesQ = [tree];\n  while (nodesQ.length) {\n    const nextNodes = [];\n    for (const node of nodesQ) {\n      for (const parent of node.children) {\n        set.add(canonicalizeJson(getAxisId(parent.axis)));\n        nextNodes.push(parent);\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return set;\n}\n\n/** Get array of axisSpecs from axisTree */\nexport function getArrayFromAxisTree(tree: AxisTree): AxisSpecNormalized[] {\n  const res = [tree.axis];\n  let nodesQ = [tree];\n  while (nodesQ.length) {\n    const nextNodes = [];\n    for (const node of nodesQ) {\n      for (const parent of node.children) {\n        res.push(parent.axis);\n        nextNodes.push(parent);\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return res;\n}\n\nexport function canonicalizeAxisWithParents(axis: AxisSpecNormalized) {\n  return canonicalizeJson(getArrayFromAxisTree(getAxesTree(axis)).map(getAxisId));\n}\n\nfunction normalizingAxesComparator(\n  axis1: AxisSpecNormalized,\n  axis2: AxisSpecNormalized,\n): 1 | -1 | 0 {\n  if (axis1.name !== axis2.name) {\n    return axis1.name < axis2.name ? 1 : -1;\n  }\n  if (axis1.type !== axis2.type) {\n    return axis1.type < axis2.type ? 1 : -1;\n  }\n  const domain1 = canonicalizeJson(axis1.domain ?? {});\n  const domain2 = canonicalizeJson(axis2.domain ?? {});\n  if (domain1 !== domain2) {\n    return domain1 < domain2 ? 1 : -1;\n  }\n\n  const parents1 = canonicalizeAxisWithParents(axis1);\n  const parents2 = canonicalizeAxisWithParents(axis2);\n\n  if (parents1 !== parents2) {\n    return parents1 < parents2 ? 1 : -1;\n  }\n\n  const annotation1 = canonicalizeJson(axis1.annotations ?? {});\n  const annotation2 = canonicalizeJson(axis2.annotations ?? {});\n  if (annotation1 !== annotation2) {\n    return annotation1 < annotation2 ? 1 : -1;\n  }\n  return 0;\n}\n\nfunction parseParentsFromAnnotations(axis: AxisSpec) {\n  const parentsList = readAnnotationJson(axis, Annotation.Parents);\n  if (parentsList === undefined) {\n    return [];\n  }\n  return parentsList;\n}\n\nfunction sortParentsDeep(axisSpec: AxisSpecNormalized) {\n  axisSpec.parentAxesSpec.forEach(sortParentsDeep);\n  axisSpec.parentAxesSpec.sort(normalizingAxesComparator);\n}\n\nfunction hasCycleOfParents(axisSpec: AxisSpecNormalized) {\n  const root = makeAxisTree(axisSpec);\n  let nodesQ = [root];\n  const ancestors = new Set(canonicalizeJson(getAxisId(axisSpec)));\n  while (nodesQ.length) {\n    const nextNodes: AxisTree[] = [];\n    const levelIds = new Set<CanonicalizedJson<AxisId>>();\n    for (const node of nodesQ) {\n      node.children = node.axis.parentAxesSpec.map(makeAxisTree);\n      for (const child of node.children) {\n        const childId = canonicalizeJson(getAxisId(child.axis));\n        if (!levelIds.has(childId)) {\n          nextNodes.push(child);\n          levelIds.add(childId);\n          if (ancestors.has(childId)) {\n            return true;\n          }\n          ancestors.add(childId);\n        }\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return false;\n}\n\n/** Create list of normalized axisSpec (parents are in array of specs, not indexes) */\nexport function getNormalizedAxesList(axes: AxisSpec[]): AxisSpecNormalized[] {\n  if (!axes.length) {\n    return [];\n  }\n  const modifiedAxes: AxisSpecNormalized[] = axes.map((axis) => {\n    const { parentAxes: _, ...copiedRest } = axis;\n    return { ...copiedRest, annotations: { ...copiedRest.annotations }, parentAxesSpec: [] };\n  });\n\n  axes.forEach((axis, idx) => {\n    const modifiedAxis = modifiedAxes[idx];\n    if (axis.parentAxes) {\n      // if we have parents by indexes then take from the list\n      modifiedAxis.parentAxesSpec = axis.parentAxes.map((idx) => modifiedAxes[idx]);\n    } else {\n      // else try to parse from annotation name\n      const parents = parseParentsFromAnnotations(axis).map((name) =>\n        modifiedAxes.find((axis) => axis.name === name),\n      );\n      modifiedAxis.parentAxesSpec = parents.some((p) => p === undefined)\n        ? []\n        : (parents as AxisSpecNormalized[]);\n\n      delete modifiedAxis.annotations?.[Annotation.Parents];\n    }\n  });\n\n  if (modifiedAxes.some(hasCycleOfParents)) {\n    // Axes list is broken\n    modifiedAxes.forEach((axis) => {\n      axis.parentAxesSpec = [];\n    });\n  } else {\n    modifiedAxes.forEach((axis) => {\n      sortParentsDeep(axis);\n    });\n  }\n\n  return modifiedAxes;\n}\n\n/** Create list of regular axisSpec from normalized (parents are indexes, inside of current axes list) */\nexport function getDenormalizedAxesList(axesSpec: AxisSpecNormalized[]): AxisSpec[] {\n  const idsList = axesSpec.map((axisSpec) => canonicalizeJson(getAxisId(axisSpec)));\n  return axesSpec.map((axisSpec) => {\n    const parentsIds = axisSpec.parentAxesSpec.map((axisSpec) =>\n      canonicalizeJson(getAxisId(axisSpec)),\n    );\n    const parentIdxs = parentsIds.map((id) => idsList.indexOf(id));\n    const { parentAxesSpec: _, ...copiedRest } = axisSpec;\n    if (parentIdxs.length) {\n      return { ...copiedRest, parentAxes: parentIdxs } as AxisSpec;\n    }\n    return copiedRest;\n  });\n}\n\n/** Common type representing spec for all the axes in a column */\nexport type AxesSpec = AxisSpec[];\n\n/// Well-known column names\nexport const PColumnName = {\n  Label: \"pl7.app/label\",\n  Table: {\n    RowSelection: \"pl7.app/table/row-selection\",\n  },\n  VDJ: {\n    LeadSelection: \"pl7.app/vdj/lead-selection\",\n    RankingOrder: \"pl7.app/vdj/ranking-order\",\n    Sequence: \"pl7.app/vdj/sequence\",\n  },\n} as const;\n\n/// Well-known axis names\nexport const PAxisName = {\n  SampleId: \"pl7.app/sampleId\",\n  VDJ: {\n    Assay: {\n      SequenceId: \"pl7.app/vdj/assay/sequenceId\",\n    },\n    ClusterId: \"pl7.app/vdj/clusterId\",\n    ClonotypeKey: \"pl7.app/vdj/clonotypeKey\",\n    ScClonotypeKey: \"pl7.app/vdj/scClonotypeKey\",\n  },\n} as const;\n\nexport function isLabelColumn(column: PColumnSpec) {\n  return column.axesSpec.length === 1 && column.name === PColumnName.Label;\n}\n\n/**\n * Full column specification including all axes specs and specs of the column\n * itself.\n *\n * A PColumn in its essence represents a mapping from a fixed size, explicitly\n * typed tuple to an explicitly typed value.\n *\n * (axis1Value1, axis2Value1, ...) -> columnValue\n *\n * Each element in tuple correspond to the axis having the same index in axesSpec.\n */\nexport type PUniversalColumnSpec = PObjectSpec & {\n  /** Defines specific type of BObject, the most generic type of unit of\n   * information in Platforma Project. */\n  readonly kind: \"PColumn\";\n\n  /** Type of column values */\n  readonly valueType: string;\n\n  /** Column name */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** Any additional information attached to the column that does not affect its\n   * identifier */\n  readonly annotations?: Record<string, string>;\n\n  /** A list of zero-based indices of parent axes from the {@link axesSpec} array. */\n  readonly parentAxes?: number[];\n\n  /** Axes specifications */\n  readonly axesSpec: AxesSpec;\n};\n\n/**\n * Specification of a data column.\n *\n * Data column is a specialized type of PColumn that stores only simple values (strings and numbers)\n * addressed by multiple keys. This is in contrast to other PColumn variants that can store more complex\n * values like files or other abstract data types. Data columns are optimized for storing and processing\n * basic tabular data.\n */\nexport type PDataColumnSpec = PUniversalColumnSpec & {\n  /** Type of column values */\n  readonly valueType: ValueType;\n};\n\n// @todo: change this to PUniversalColumnSpec\nexport type PColumnSpec = PDataColumnSpec;\n\n/** Unique PColumnSpec identifier */\nexport type PColumnSpecId = {\n  /** Defines specific type of BObject, the most generic type of unit of\n   * information in Platforma Project. */\n  readonly kind: \"PColumn\";\n\n  /** Type of column values */\n  readonly valueType: ValueType;\n\n  /** Column name */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** A list of zero-based indices of parent axes from the {@link axesSpec} array. */\n  readonly parentAxes?: number[];\n\n  /** Axes id */\n  readonly axesId: AxesId;\n};\n\nexport function getPColumnSpecId(spec: PColumnSpec): PColumnSpecId {\n  return {\n    kind: spec.kind,\n    valueType: spec.valueType,\n    name: spec.name,\n    domain: spec.domain,\n    parentAxes: spec.parentAxes,\n    axesId: getAxesId(spec.axesSpec),\n  };\n}\n\nexport interface PColumn<Data> extends PObject<Data> {\n  /** PColumn spec, allowing it to be found among other PObjects */\n  readonly spec: PColumnSpec;\n}\n\nexport type PColumnLazy<T> = PColumn<() => T>;\n\n/** Columns in a PFrame also have internal identifier, this object represents\n * combination of specs and such id */\nexport interface PColumnIdAndSpec {\n  /** Internal column id within the PFrame */\n  readonly columnId: PObjectId;\n\n  /** Column spec */\n  readonly spec: PColumnSpec;\n}\n\n/** Get column id and spec from a column */\nexport function getColumnIdAndSpec<Data>(column: PColumn<Data>): PColumnIdAndSpec {\n  return {\n    columnId: column.id,\n    spec: column.spec,\n  };\n}\n\n/** Information returned by {@link PFrame.listColumns} method */\nexport interface PColumnInfo extends PColumnIdAndSpec {\n  /** True if data was associated with this PColumn */\n  readonly hasData: boolean;\n}\n\nexport interface AxisId {\n  /** Type of the axis or column value. 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Domain>(\n  spec: { domain?: Metadata | undefined } | undefined,\n  key: T,\n): Domain[T] | undefined {\n  return readMetadata<Domain, T>(spec?.domain, key);\n}\n\n/// Helper function for reading json-encoded domain values, throws on JSON parsing error\nexport function readDomainJsonOrThrow<T extends keyof DomainJson>(\n  spec: { domain?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<DomainJson[T]> | undefined {\n  return readMetadataJsonOrThrow<Domain, T>(spec?.domain, DomainJson, key, \"readDomainJsonOrThrow\");\n}\n\n/// Helper function for reading json-encoded domain values, returns undefined on JSON parsing error\nexport function readDomainJson<T extends keyof DomainJson>(\n  spec: { domain?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<DomainJson[T]> | undefined {\n  return readMetadataJson<Domain, T>(spec?.domain, DomainJson, key);\n}\n\n/// Well-known annotations\nexport const Annotation = {\n  AxisNature: \"pl7.app/axisNature\",\n  Alphabet: 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[Annotation.Description]: string;\n    [Annotation.DiscreteValues]: StringifiedJson<number[]> | StringifiedJson<string[]>;\n    [Annotation.Format]: string;\n    [Annotation.Graph.Axis.HighCardinality]: StringifiedJson<boolean>;\n    [Annotation.Graph.Axis.LowerLimit]: StringifiedJson<number>;\n    [Annotation.Graph.Axis.SymmetricRange]: StringifiedJson<boolean>;\n    [Annotation.Graph.Axis.UpperLimit]: StringifiedJson<number>;\n    [Annotation.Graph.IsDenseAxis]: StringifiedJson<boolean>;\n    [Annotation.Graph.IsVirtual]: StringifiedJson<boolean>;\n    [Annotation.Graph.Palette]: StringifiedJson<{ mapping: Record<string, number>; name: string }>;\n    [Annotation.Graph.Thresholds]: StringifiedJson<\n      { columnId: { valueType: ValueType; name: string }; value: number }[]\n    >;\n    [Annotation.Graph.TreatAbsentValuesAs]: StringifiedJson<number>;\n    [Annotation.HideDataFromGraphs]: StringifiedJson<boolean>;\n    [Annotation.HideDataFromUi]: StringifiedJson<boolean>;\n    [Annotation.IsDiscreteFilter]: StringifiedJson<boolean>;\n    [Annotation.IsLinkerColumn]: StringifiedJson<boolean>;\n    [Annotation.IsSubset]: StringifiedJson<boolean>;\n    [Annotation.Label]: string;\n    [Annotation.Max]: StringifiedJson<number>;\n    [Annotation.Min]: StringifiedJson<number>;\n    [Annotation.MultipliesBy]: StringifiedJson<AxisSpec[\"name\"][]>;\n    [Annotation.Parents]: StringifiedJson<AxisSpec[\"name\"][]>;\n    [Annotation.Sequence.Annotation.Mapping]: StringifiedJson<Record<string, string>>;\n    [Annotation.Sequence.IsAnnotation]: StringifiedJson<boolean>;\n    [Annotation.Table.FontFamily]: string;\n    [Annotation.Table.OrderPriority]: StringifiedJson<number>;\n    [Annotation.Table.Visibility]: \"hidden\" | \"optional\" | (string & {});\n    [Annotation.Trace]: StringifiedJson<Record<string, unknown>>;\n    [Annotation.VDJ.IsAssemblingFeature]: StringifiedJson<boolean>;\n  }>;\n\n// export const AxisSpec = z.object({\n//   type: z.nativeEnum(ValueType),\n//   name: z.string(),\n//   domain: z.record(z.string(), z.string()).optional(),\n//   annotations: z.record(z.string(), z.string()).optional(),\n//   parentAxes: z.array(z.number()).optional(),\n// }).passthrough();\n//\n// type Expect<T extends true> = T;\n// type Equal<X, Y> =\n// (<T>() => T extends X ? 1 : 2) extends (<T>() => T extends Y ? 1 : 2) ? true : false;\n//\n// type _test = Expect<Equal<\n//   Readonly<z.infer<typeof AxisSpec>>,\n//   Readonly<AxisSpec & Record<string, unknown>>\n// >>;\n\nexport type AnnotationJson = MetadataJson<Annotation>;\n\nconst ValueTypeSchema = z.enum([\"Int\", \"Long\", \"Float\", \"Double\", \"String\"] as const);\nexport const AnnotationJson: AnnotationJson = {\n  [Annotation.DiscreteValues]: z.array(z.string()).or(z.array(z.number())),\n  [Annotation.Graph.Axis.HighCardinality]: z.boolean(),\n  [Annotation.Graph.Axis.LowerLimit]: z.number(),\n  [Annotation.Graph.Axis.UpperLimit]: z.number(),\n  [Annotation.Graph.Axis.SymmetricRange]: z.boolean(),\n  [Annotation.Graph.IsDenseAxis]: z.boolean(),\n  [Annotation.Graph.Palette]: z.object({ mapping: z.record(z.number()), name: z.string() }),\n  [Annotation.Graph.Thresholds]: z.array(\n    z.object({\n      columnId: z.object({ valueType: ValueTypeSchema, name: z.string() }),\n      value: z.number(),\n    }),\n  ),\n  [Annotation.Graph.TreatAbsentValuesAs]: z.number(),\n  [Annotation.Graph.IsVirtual]: z.boolean(),\n  [Annotation.HideDataFromUi]: z.boolean(),\n  [Annotation.HideDataFromGraphs]: z.boolean(),\n  [Annotation.IsDiscreteFilter]: z.boolean(),\n  [Annotation.IsLinkerColumn]: z.boolean(),\n  [Annotation.IsSubset]: z.boolean(),\n  [Annotation.Max]: z.number(),\n  [Annotation.Min]: z.number(),\n  [Annotation.MultipliesBy]: z.array(z.string()),\n  [Annotation.Parents]: z.array(z.string()),\n  [Annotation.Sequence.Annotation.Mapping]: z.record(z.string(), z.string()),\n  [Annotation.Sequence.IsAnnotation]: z.boolean(),\n  [Annotation.Table.OrderPriority]: z.number(),\n  [Annotation.Trace]: z.record(z.string(), z.unknown()),\n  [Annotation.VDJ.IsAssemblingFeature]: z.boolean(),\n};\n\n/// Helper function for reading plain annotation values\nexport function readAnnotation<T extends keyof Annotation>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): Annotation[T] | undefined {\n  return readMetadata<Annotation, T>(spec?.annotations, key);\n}\n\n/// Helper function for reading json-encoded annotation values, throws on JSON parsing error\nexport function readAnnotationJsonOrThrow<T extends keyof AnnotationJson>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<AnnotationJson[T]> | undefined {\n  return readMetadataJsonOrThrow<Annotation, T>(\n    spec?.annotations,\n    AnnotationJson,\n    key,\n    \"readAnnotationJsonOrThrow\",\n  );\n}\n\n/// Helper function for reading json-encoded annotation values, returns undefined on JSON parsing error\nexport function readAnnotationJson<T extends keyof AnnotationJson>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<AnnotationJson[T]> | undefined {\n  return readMetadataJson<Annotation, T>(spec?.annotations, AnnotationJson, key);\n}\n\nexport function isLinkerColumn(column: PColumnSpec): boolean {\n  return !!readAnnotationJson(column, Annotation.IsLinkerColumn);\n}\n\n/**\n * Specification of an individual axis.\n *\n * Each axis is a part of a composite key that addresses data inside the PColumn.\n *\n * Each record inside a PColumn is addressed by a unique tuple of values set for\n * all the axes specified in the column spec.\n */\nexport type AxisSpec = {\n  /** Type of the axis value. Should not use non-key types like float or double. */\n  readonly type: ValueType;\n\n  /** Name of the axis */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** Context domain provides additional axis identity that is matched\n   * by kinship rules (subset/superset/overlap) rather than exact equality */\n  readonly contextDomain?: Record<string, string>;\n\n  /** Any additional information attached to the axis that does not affect its\n   * identifier */\n  readonly annotations?: Record<string, string>;\n\n  /**\n   * Parent axes provide contextual grouping for the axis in question, establishing\n   * a hierarchy where the current axis is dependent on one or more axes for its\n   * full definition and meaning. For instance, in a data structure where each\n   * \"container\" axis may contain multiple \"item\" axes, the `item` axis would\n   * list the index of the `container` axis in this field to denote its dependency.\n   *\n   * This means that the identity or significance of the `item` axis is only\n   * interpretable when combined with its parent `container` axis. An `item` axis\n   * index by itself may be non-unique and only gains uniqueness within the context\n   * of its parent `container`. Therefore, the `parentAxes` field is essential for\n   * mapping these relationships and ensuring data coherence across nested or\n   * multi-level data models.\n   *\n   * A list of zero-based indices of parent axes in the overall axes specification\n   * from the column spec. Each index corresponds to the position of a parent axis\n   * in the list that defines the structure of the data model.\n   */\n  readonly parentAxes?: number[];\n};\n\n/** Parents are specs, not indexes; normalized axis can be used considering its parents independently from column */\nexport interface AxisSpecNormalized extends Omit<AxisSpec, \"parentAxes\"> {\n  parentAxesSpec: AxisSpecNormalized[];\n}\n\n/** Tree: axis is a root, its parents are children */\nexport type AxisTree = {\n  axis: AxisSpecNormalized;\n  children: AxisTree[]; // parents\n};\n\nfunction makeAxisTree(axis: AxisSpecNormalized): AxisTree {\n  return { axis, children: [] };\n}\n\n/** Build tree by axis parents annotations */\nexport function getAxesTree(rootAxis: AxisSpecNormalized): AxisTree {\n  const root = makeAxisTree(rootAxis);\n  let nodesQ = [root];\n  while (nodesQ.length) {\n    const nextNodes: AxisTree[] = [];\n    for (const node of nodesQ) {\n      node.children = node.axis.parentAxesSpec.map(makeAxisTree);\n      nextNodes.push(...node.children);\n    }\n    nodesQ = nextNodes;\n  }\n  return root;\n}\n\n/** Get set of canonicalized axisIds from axisTree */\nexport function getSetFromAxisTree(tree: AxisTree): Set<CanonicalizedJson<AxisId>> {\n  const set = new Set([canonicalizeJson(getAxisId(tree.axis))]);\n  let nodesQ = [tree];\n  while (nodesQ.length) {\n    const nextNodes = [];\n    for (const node of nodesQ) {\n      for (const parent of node.children) {\n        set.add(canonicalizeJson(getAxisId(parent.axis)));\n        nextNodes.push(parent);\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return set;\n}\n\n/** Get array of axisSpecs from axisTree */\nexport function getArrayFromAxisTree(tree: AxisTree): AxisSpecNormalized[] {\n  const res = [tree.axis];\n  let nodesQ = [tree];\n  while (nodesQ.length) {\n    const nextNodes = [];\n    for (const node of nodesQ) {\n      for (const parent of node.children) {\n        res.push(parent.axis);\n        nextNodes.push(parent);\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return res;\n}\n\nexport function canonicalizeAxisWithParents(axis: AxisSpecNormalized) {\n  return canonicalizeJson(getArrayFromAxisTree(getAxesTree(axis)).map(getAxisId));\n}\n\nfunction normalizingAxesComparator(\n  axis1: AxisSpecNormalized,\n  axis2: AxisSpecNormalized,\n): 1 | -1 | 0 {\n  if (axis1.name !== axis2.name) {\n    return axis1.name < axis2.name ? 1 : -1;\n  }\n  if (axis1.type !== axis2.type) {\n    return axis1.type < axis2.type ? 1 : -1;\n  }\n  const domain1 = canonicalizeJson(axis1.domain ?? {});\n  const domain2 = canonicalizeJson(axis2.domain ?? {});\n  if (domain1 !== domain2) {\n    return domain1 < domain2 ? 1 : -1;\n  }\n\n  const contextDomain1 = canonicalizeJson(axis1.contextDomain ?? {});\n  const contextDomain2 = canonicalizeJson(axis2.contextDomain ?? {});\n  if (contextDomain1 !== contextDomain2) {\n    return contextDomain1 < contextDomain2 ? 1 : -1;\n  }\n\n  const parents1 = canonicalizeAxisWithParents(axis1);\n  const parents2 = canonicalizeAxisWithParents(axis2);\n\n  if (parents1 !== parents2) {\n    return parents1 < parents2 ? 1 : -1;\n  }\n\n  const annotation1 = canonicalizeJson(axis1.annotations ?? {});\n  const annotation2 = canonicalizeJson(axis2.annotations ?? {});\n  if (annotation1 !== annotation2) {\n    return annotation1 < annotation2 ? 1 : -1;\n  }\n  return 0;\n}\n\nfunction parseParentsFromAnnotations(axis: AxisSpec) {\n  const parentsList = readAnnotationJson(axis, Annotation.Parents);\n  if (parentsList === undefined) {\n    return [];\n  }\n  return parentsList;\n}\n\nfunction sortParentsDeep(axisSpec: AxisSpecNormalized) {\n  axisSpec.parentAxesSpec.forEach(sortParentsDeep);\n  axisSpec.parentAxesSpec.sort(normalizingAxesComparator);\n}\n\nfunction hasCycleOfParents(axisSpec: AxisSpecNormalized) {\n  const root = makeAxisTree(axisSpec);\n  let nodesQ = [root];\n  const ancestors = new Set(canonicalizeJson(getAxisId(axisSpec)));\n  while (nodesQ.length) {\n    const nextNodes: AxisTree[] = [];\n    const levelIds = new Set<CanonicalizedJson<AxisId>>();\n    for (const node of nodesQ) {\n      node.children = node.axis.parentAxesSpec.map(makeAxisTree);\n      for (const child of node.children) {\n        const childId = canonicalizeJson(getAxisId(child.axis));\n        if (!levelIds.has(childId)) {\n          nextNodes.push(child);\n          levelIds.add(childId);\n          if (ancestors.has(childId)) {\n            return true;\n          }\n          ancestors.add(childId);\n        }\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return false;\n}\n\n/** Create list of normalized axisSpec (parents are in array of specs, not indexes) */\nexport function getNormalizedAxesList(axes: AxisSpec[]): AxisSpecNormalized[] {\n  if (!axes.length) {\n    return [];\n  }\n  const modifiedAxes: AxisSpecNormalized[] = axes.map((axis) => {\n    const { parentAxes: _, ...copiedRest } = axis;\n    return { ...copiedRest, annotations: { ...copiedRest.annotations }, parentAxesSpec: [] };\n  });\n\n  axes.forEach((axis, idx) => {\n    const modifiedAxis = modifiedAxes[idx];\n    if (axis.parentAxes) {\n      // if we have parents by indexes then take from the list\n      modifiedAxis.parentAxesSpec = axis.parentAxes.map((idx) => modifiedAxes[idx]);\n    } else {\n      // else try to parse from annotation name\n      const parents = parseParentsFromAnnotations(axis).map((name) =>\n        modifiedAxes.find((axis) => axis.name === name),\n      );\n      modifiedAxis.parentAxesSpec = parents.some((p) => p === undefined)\n        ? []\n        : (parents as AxisSpecNormalized[]);\n\n      delete modifiedAxis.annotations?.[Annotation.Parents];\n    }\n  });\n\n  if (modifiedAxes.some(hasCycleOfParents)) {\n    // Axes list is broken\n    modifiedAxes.forEach((axis) => {\n      axis.parentAxesSpec = [];\n    });\n  } else {\n    modifiedAxes.forEach((axis) => {\n      sortParentsDeep(axis);\n    });\n  }\n\n  return modifiedAxes;\n}\n\n/** Create list of regular axisSpec from normalized (parents are indexes, inside of current axes list) */\nexport function getDenormalizedAxesList(axesSpec: AxisSpecNormalized[]): AxisSpec[] {\n  const idsList = axesSpec.map((axisSpec) => canonicalizeJson(getAxisId(axisSpec)));\n  return axesSpec.map((axisSpec) => {\n    const parentsIds = axisSpec.parentAxesSpec.map((axisSpec) =>\n      canonicalizeJson(getAxisId(axisSpec)),\n    );\n    const parentIdxs = parentsIds.map((id) => idsList.indexOf(id));\n    const { parentAxesSpec: _, ...copiedRest } = axisSpec;\n    if (parentIdxs.length) {\n      return { ...copiedRest, parentAxes: parentIdxs } as AxisSpec;\n    }\n    return copiedRest;\n  });\n}\n\n/** Common type representing spec for all the axes in a column */\nexport type AxesSpec = AxisSpec[];\n\n/// Well-known column names\nexport const PColumnName = {\n  Label: \"pl7.app/label\",\n  Table: {\n    RowSelection: \"pl7.app/table/row-selection\",\n  },\n  VDJ: {\n    LeadSelection: \"pl7.app/vdj/lead-selection\",\n    RankingOrder: \"pl7.app/vdj/ranking-order\",\n    Sequence: \"pl7.app/vdj/sequence\",\n  },\n} as const;\n\n/// Well-known axis names\nexport const PAxisName = {\n  SampleId: \"pl7.app/sampleId\",\n  VDJ: {\n    Assay: {\n      SequenceId: \"pl7.app/vdj/assay/sequenceId\",\n    },\n    ClusterId: \"pl7.app/vdj/clusterId\",\n    ClonotypeKey: \"pl7.app/vdj/clonotypeKey\",\n    ScClonotypeKey: \"pl7.app/vdj/scClonotypeKey\",\n  },\n} as const;\n\nexport function isLabelColumn(column: PColumnSpec) {\n  return column.axesSpec.length === 1 && column.name === PColumnName.Label;\n}\n\n/**\n * Full column specification including all axes specs and specs of the column\n * itself.\n *\n * A PColumn in its essence represents a mapping from a fixed size, explicitly\n * typed tuple to an explicitly typed value.\n *\n * (axis1Value1, axis2Value1, ...) -> columnValue\n *\n * Each element in tuple correspond to the axis having the same index in axesSpec.\n */\nexport type PUniversalColumnSpec = PObjectSpec & {\n  /** Defines specific type of BObject, the most generic type of unit of\n   * information in Platforma Project. */\n  readonly kind: \"PColumn\";\n\n  /** Type of column values */\n  readonly valueType: string;\n\n  /** Column name */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** Context domain provides additional column identity that is matched\n   * by kinship rules (subset/superset/overlap) rather than exact equality */\n  readonly contextDomain?: Record<string, string>;\n\n  /** Any additional information attached to the column that does not affect its\n   * identifier */\n  readonly annotations?: Record<string, string>;\n\n  /** A list of zero-based indices of parent axes from the {@link axesSpec} array. */\n  readonly parentAxes?: number[];\n\n  /** Axes specifications */\n  readonly axesSpec: AxesSpec;\n};\n\n/**\n * Specification of a data column.\n *\n * Data column is a specialized type of PColumn that stores only simple values (strings and numbers)\n * addressed by multiple keys. This is in contrast to other PColumn variants that can store more complex\n * values like files or other abstract data types. Data columns are optimized for storing and processing\n * basic tabular data.\n */\nexport type PDataColumnSpec = PUniversalColumnSpec & {\n  /** Type of column values */\n  readonly valueType: ValueType;\n};\n\n// @todo: change this to PUniversalColumnSpec\nexport type PColumnSpec = PDataColumnSpec;\n\n/** Unique PColumnSpec identifier */\nexport type PColumnSpecId = {\n  /** Defines specific type of BObject, the most generic type of unit of\n   * information in Platforma Project. */\n  readonly kind: \"PColumn\";\n\n  /** Type of column values */\n  readonly valueType: ValueType;\n\n  /** Column name */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** Context domain provides additional column identity that is matched\n   * by kinship rules (subset/superset/overlap) rather than exact equality */\n  readonly contextDomain?: Record<string, string>;\n\n  /** A list of zero-based indices of parent axes from the {@link axesSpec} array. */\n  readonly parentAxes?: number[];\n\n  /** Axes id */\n  readonly axesId: AxesId;\n};\n\nexport function getPColumnSpecId(spec: PColumnSpec): PColumnSpecId {\n  return {\n    kind: spec.kind,\n    valueType: spec.valueType,\n    name: spec.name,\n    domain: spec.domain,\n    contextDomain: spec.contextDomain,\n    parentAxes: spec.parentAxes,\n    axesId: getAxesId(spec.axesSpec),\n  };\n}\n\nexport interface PColumn<Data> extends PObject<Data> {\n  /** PColumn spec, allowing it to be found among other PObjects */\n  readonly spec: PColumnSpec;\n}\n\nexport type PColumnLazy<T> = PColumn<() => T>;\n\n/** Columns in a PFrame also have internal identifier, this object represents\n * combination of specs and such id */\nexport interface PColumnIdAndSpec {\n  /** Internal column id within the PFrame */\n  readonly columnId: PObjectId;\n\n  /** Column spec */\n  readonly spec: PColumnSpec;\n}\n\n/** Get column id and spec from a column */\nexport function getColumnIdAndSpec<Data>(column: PColumn<Data>): PColumnIdAndSpec {\n  return {\n    columnId: column.id,\n    spec: column.spec,\n  };\n}\n\n/** Information returned by {@link PFrame.listColumns} method */\nexport interface PColumnInfo extends PColumnIdAndSpec {\n  /** True if data was associated with this PColumn */\n  readonly hasData: boolean;\n}\n\nexport interface AxisId {\n  /** Type of the axis or column value. For an axis should not use non-key\n   * types like float or double. */\n  readonly type: ValueType;\n\n  /** Name of the axis or column */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis or column name and type to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** Context domain provides additional axis identity that is matched\n   * by kinship rules (subset/superset/overlap) rather than exact equality */\n  readonly contextDomain?: Record<string, string>;\n}\n\n/** Array of axis ids */\nexport type AxesId = AxisId[];\n\n/** Extracts axis ids from axis spec */\nexport function getAxisId(spec: AxisSpec): AxisId {\n  const { type, name, domain, contextDomain } = spec;\n  const result: AxisId = { type, name };\n  if (domain && Object.entries(domain).length > 0) {\n    Object.assign(result, { domain });\n  }\n  if (contextDomain && Object.entries(contextDomain).length > 0) {\n    Object.assign(result, { contextDomain });\n  }\n  return result;\n}\n\n/** Extracts axes ids from axes spec array from column spec */\nexport function getAxesId(spec: AxesSpec): AxesId {\n  return spec.map(getAxisId);\n}\n\n/** Canonicalizes axis id */\nexport function canonicalizeAxisId(id: AxisId): CanonicalizedJson<AxisId> {\n  return canonicalizeJson(getAxisId(id));\n}\n\n/** Returns true if all domains from query are found in target */\nfunction matchDomain(query?: Record<string, string>, target?: Record<string, string>) {\n  if (query === undefined) return target === undefined;\n  if (target === undefined) return true;\n  for (const k in target) {\n    if (query[k] !== target[k]) return false;\n  }\n  return true;\n}\n\n/** Returns whether \"match\" axis id is compatible with the \"query\" */\nexport function matchAxisId(query: AxisId, target: AxisId): boolean {\n  return (\n    query.name === target.name &&\n    matchDomain(query.domain, target.domain) &&\n    matchDomain(query.contextDomain, target.contextDomain)\n  );\n}\n\nexport function getTypeFromPColumnOrAxisSpec(spec: PColumnSpec | AxisSpec): ValueType {\n  return \"valueType\" in spec ? spec.valueType : spec.type;\n}\n\nexport function isAxisId(id: unknown): id is AxisId {\n  return typeof id === \"object\" && id !== null && \"name\" in id && \"type\" in 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package/dist/drivers/pframe/spec/spec.d.ts

@@ -170,6 +170,9 @@ type AxisSpec = {
   /** Adds auxiliary information to the axis name, type and parents to form a
    * unique identifier */
   readonly domain?: Record<string, string>;
+  /** Context domain provides additional axis identity that is matched
+   * by kinship rules (subset/superset/overlap) rather than exact equality */
+  readonly contextDomain?: Record<string, string>;
   /** Any additional information attached to the axis that does not affect its
    * identifier */
   readonly annotations?: Record<string, string>;
@@ -260,6 +263,9 @@ type PUniversalColumnSpec = PObjectSpec & {
   /** Adds auxiliary information to the axis name, type and parents to form a
    * unique identifier */
   readonly domain?: Record<string, string>;
+  /** Context domain provides additional column identity that is matched
+   * by kinship rules (subset/superset/overlap) rather than exact equality */
+  readonly contextDomain?: Record<string, string>;
   /** Any additional information attached to the column that does not affect its
    * identifier */
   readonly annotations?: Record<string, string>; /** A list of zero-based indices of parent axes from the {@link axesSpec} array. */
@@ -287,7 +293,10 @@ type PColumnSpecId = {
   readonly name: string;
   /** Adds auxiliary information to the axis name, type and parents to form a
    * unique identifier */
-  readonly domain?: Record<string, string>; /** A list of zero-based indices of parent axes from the {@link axesSpec} array. */
+  readonly domain?: Record<string, string>;
+  /** Context domain provides additional column identity that is matched
+   * by kinship rules (subset/superset/overlap) rather than exact equality */
+  readonly contextDomain?: Record<string, string>; /** A list of zero-based indices of parent axes from the {@link axesSpec} array. */
   readonly parentAxes?: number[]; /** Axes id */
   readonly axesId: AxesId;
 };
@@ -321,6 +330,9 @@ interface AxisId {
   /** Adds auxiliary information to the axis or column name and type to form a
    * unique identifier */
   readonly domain?: Record<string, string>;
+  /** Context domain provides additional axis identity that is matched
+   * by kinship rules (subset/superset/overlap) rather than exact equality */
+  readonly contextDomain?: Record<string, string>;
 }
 /** Array of axis ids */
 type AxesId = AxisId[];

package/dist/drivers/pframe/spec/spec.js

@@ -211,6 +211,9 @@ function normalizingAxesComparator(axis1, axis2) {
 	const domain1 = canonicalizeJson(axis1.domain ?? {});
 	const domain2 = canonicalizeJson(axis2.domain ?? {});
 	if (domain1 !== domain2) return domain1 < domain2 ? 1 : -1;
+	const contextDomain1 = canonicalizeJson(axis1.contextDomain ?? {});
+	const contextDomain2 = canonicalizeJson(axis2.contextDomain ?? {});
+	if (contextDomain1 !== contextDomain2) return contextDomain1 < contextDomain2 ? 1 : -1;
 	const parents1 = canonicalizeAxisWithParents(axis1);
 	const parents2 = canonicalizeAxisWithParents(axis2);
 	if (parents1 !== parents2) return parents1 < parents2 ? 1 : -1;
@@ -318,6 +321,7 @@ function getPColumnSpecId(spec) {
 		valueType: spec.valueType,
 		name: spec.name,
 		domain: spec.domain,
+		contextDomain: spec.contextDomain,
 		parentAxes: spec.parentAxes,
 		axesId: getAxesId(spec.axesSpec)
 	};
@@ -331,12 +335,13 @@ function getColumnIdAndSpec(column) {
 }
 /** Extracts axis ids from axis spec */
 function getAxisId(spec) {
-	const { type, name, domain } = spec;
+	const { type, name, domain, contextDomain } = spec;
 	const result = {
 		type,
 		name
 	};
 	if (domain && Object.entries(domain).length > 0) Object.assign(result, { domain });
+	if (contextDomain && Object.entries(contextDomain).length > 0) Object.assign(result, { contextDomain });
 	return result;
 }
 /** Extracts axes ids from axes spec array from column spec */
@@ -356,7 +361,7 @@ function matchDomain(query, target) {
 }
 /** Returns whether "match" axis id is compatible with the "query" */
 function matchAxisId(query, target) {
-	return query.name === target.name && matchDomain(query.domain, target.domain);
+	return query.name === target.name && matchDomain(query.domain, target.domain) && matchDomain(query.contextDomain, target.contextDomain);
 }
 function getTypeFromPColumnOrAxisSpec(spec) {
 	return "valueType" in spec ? spec.valueType : spec.type;

package/dist/drivers/pframe/spec/spec.js.map

@@ -1 +1 @@
-{"version":3,"file":"spec.js","names":[],"sources":["../../../../src/drivers/pframe/spec/spec.ts"],"sourcesContent":["import { ensureError } from \"../../../errors\";\nimport { canonicalizeJson, type CanonicalizedJson, type StringifiedJson } from \"../../../json\";\nimport type { PObject, PObjectId, PObjectSpec } from \"../../../pool\";\nimport { z } from \"zod\";\n\nexport const ValueType = {\n  Int: \"Int\",\n  Long: \"Long\",\n  Float: \"Float\",\n  Double: \"Double\",\n  String: \"String\",\n  Bytes: \"Bytes\",\n} as const;\n\nexport type AxisValueType = Extract<ValueType, \"Int\" | \"Long\" | \"String\">;\nexport type ColumnValueType = ValueType;\n\n/** PFrame columns and axes within them may store one of these types. */\nexport type ValueType = (typeof ValueType)[keyof typeof ValueType];\n\nexport type Metadata = Record<string, string>;\n\nexport function readMetadata<U extends Metadata, T extends keyof U = keyof U>(\n  metadata: Metadata | undefined,\n  key: T,\n): U[T] | undefined {\n  return (metadata as U | undefined)?.[key];\n}\n\ntype MetadataJsonImpl<M> = {\n  [P in keyof M as M[P] extends StringifiedJson ? P : never]: M[P] extends StringifiedJson<infer U>\n    ? z.ZodType<U>\n    : never;\n};\nexport type MetadataJson<M> = MetadataJsonImpl<Required<M>>;\n\nexport function readMetadataJsonOrThrow<M extends Metadata, T extends keyof MetadataJson<M>>(\n  metadata: Metadata | undefined,\n  metadataJson: MetadataJson<M>,\n  key: T,\n  methodNameInError: string = \"readMetadataJsonOrThrow\",\n): z.infer<MetadataJson<M>[T]> | undefined {\n  const json = readMetadata<M, T>(metadata, key);\n  if (json === undefined) return undefined;\n\n  const schema = metadataJson[key];\n  try {\n    const value = JSON.parse(json);\n    return schema.parse(value);\n  } catch (error: unknown) {\n    throw new Error(\n      `${methodNameInError} failed, ` +\n        `key: ${String(key)}, ` +\n        `value: ${json}, ` +\n        `error: ${ensureError(error)}`,\n    );\n  }\n}\n\nexport function readMetadataJson<M extends Metadata, T extends keyof MetadataJson<M>>(\n  metadata: Metadata | undefined,\n  metadataJson: MetadataJson<M>,\n  key: T,\n): z.infer<MetadataJson<M>[T]> | undefined {\n  try {\n    return readMetadataJsonOrThrow(metadata, metadataJson, key);\n  } catch {\n    return undefined; // treat invalid values as unset\n  }\n}\n\n/// Well-known domains\nexport const Domain = {\n  Alphabet: \"pl7.app/alphabet\",\n  BlockId: \"pl7.app/blockId\",\n  VDJ: {\n    Clustering: {\n      BlockId: \"pl7.app/vdj/clustering/blockId\",\n    },\n    ScClonotypeChain: {\n      Index: \"pl7.app/vdj/scClonotypeChain/index\",\n    },\n  },\n} as const;\n\nexport type Domain = Metadata &\n  Partial<{\n    [Domain.Alphabet]: \"nucleotide\" | \"aminoacid\" | (string & {});\n    [Domain.BlockId]: string;\n    [Domain.VDJ.ScClonotypeChain.Index]: \"primary\" | \"secondary\" | (string & {});\n  }>;\n\nexport type DomainJson = MetadataJson<Domain>;\nexport const DomainJson: DomainJson = {};\n\n/// Helper function for reading plain domain values\nexport function readDomain<T extends keyof Domain>(\n  spec: { domain?: Metadata | undefined } | undefined,\n  key: T,\n): Domain[T] | undefined {\n  return readMetadata<Domain, T>(spec?.domain, key);\n}\n\n/// Helper function for reading json-encoded domain values, throws on JSON parsing error\nexport function readDomainJsonOrThrow<T extends keyof DomainJson>(\n  spec: { domain?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<DomainJson[T]> | undefined {\n  return readMetadataJsonOrThrow<Domain, T>(spec?.domain, DomainJson, key, \"readDomainJsonOrThrow\");\n}\n\n/// Helper function for reading json-encoded domain values, returns undefined on JSON parsing error\nexport function readDomainJson<T extends keyof DomainJson>(\n  spec: { domain?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<DomainJson[T]> | undefined {\n  return readMetadataJson<Domain, T>(spec?.domain, DomainJson, key);\n}\n\n/// Well-known annotations\nexport const Annotation = {\n  AxisNature: \"pl7.app/axisNature\",\n  Alphabet: \"pl7.app/alphabet\",\n  Description: \"pl7.app/description\",\n  DiscreteValues: \"pl7.app/discreteValues\",\n  Format: \"pl7.app/format\",\n  Graph: {\n    Axis: {\n      HighCardinality: \"pl7.app/graph/axis/highCardinality\",\n      LowerLimit: \"pl7.app/graph/axis/lowerLimit\",\n      SymmetricRange: \"pl7.app/graph/axis/symmetricRange\",\n      UpperLimit: \"pl7.app/graph/axis/upperLimit\",\n    },\n    IsDenseAxis: \"pl7.app/graph/isDenseAxis\",\n    IsVirtual: \"pl7.app/graph/isVirtual\",\n    Palette: \"pl7.app/graph/palette\",\n    Thresholds: \"pl7.app/graph/thresholds\",\n    TreatAbsentValuesAs: \"pl7.app/graph/treatAbsentValuesAs\",\n  },\n  HideDataFromUi: \"pl7.app/hideDataFromUi\",\n  HideDataFromGraphs: \"pl7.app/hideDataFromGraphs\",\n  IsDiscreteFilter: \"pl7.app/isDiscreteFilter\",\n  IsAnchor: \"pl7.app/isAnchor\",\n  IsLinkerColumn: \"pl7.app/isLinkerColumn\",\n  IsScore: \"pl7.app/isScore\",\n  IsSubset: \"pl7.app/isSubset\",\n  Label: \"pl7.app/label\",\n  Max: \"pl7.app/max\",\n  Min: \"pl7.app/min\",\n  MultipliesBy: \"pl7.app/multipliesBy\",\n  Parents: \"pl7.app/parents\",\n  Score: {\n    DefaultCutoff: \"pl7.app/score/defaultCutoff\",\n    RankingOrder: \"pl7.app/score/rankingOrder\",\n  },\n  Sequence: {\n    Annotation: {\n      Mapping: \"pl7.app/sequence/annotation/mapping\",\n    },\n    IsAnnotation: \"pl7.app/sequence/isAnnotation\",\n  },\n  Table: {\n    FontFamily: \"pl7.app/table/fontFamily\",\n    OrderPriority: \"pl7.app/table/orderPriority\",\n    Visibility: \"pl7.app/table/visibility\",\n  },\n  Trace: \"pl7.app/trace\",\n  VDJ: {\n    IsAssemblingFeature: \"pl7.app/vdj/isAssemblingFeature\",\n    IsMainSequence: \"pl7.app/vdj/isMainSequence\",\n  },\n} as const;\n\nexport type Annotation = Metadata &\n  Partial<{\n    [Annotation.Alphabet]: \"nucleotide\" | \"aminoacid\" | (string & {});\n    [Annotation.AxisNature]: \"homogeneous\" | \"heterogeneous\" | \"scaleCompatible\" | (string & {});\n    [Annotation.Description]: string;\n    [Annotation.DiscreteValues]: StringifiedJson<number[]> | StringifiedJson<string[]>;\n    [Annotation.Format]: string;\n    [Annotation.Graph.Axis.HighCardinality]: StringifiedJson<boolean>;\n    [Annotation.Graph.Axis.LowerLimit]: StringifiedJson<number>;\n    [Annotation.Graph.Axis.SymmetricRange]: StringifiedJson<boolean>;\n    [Annotation.Graph.Axis.UpperLimit]: StringifiedJson<number>;\n    [Annotation.Graph.IsDenseAxis]: StringifiedJson<boolean>;\n    [Annotation.Graph.IsVirtual]: StringifiedJson<boolean>;\n    [Annotation.Graph.Palette]: StringifiedJson<{ mapping: Record<string, number>; name: string }>;\n    [Annotation.Graph.Thresholds]: StringifiedJson<\n      { columnId: { valueType: ValueType; name: string }; value: number }[]\n    >;\n    [Annotation.Graph.TreatAbsentValuesAs]: StringifiedJson<number>;\n    [Annotation.HideDataFromGraphs]: StringifiedJson<boolean>;\n    [Annotation.HideDataFromUi]: StringifiedJson<boolean>;\n    [Annotation.IsDiscreteFilter]: StringifiedJson<boolean>;\n    [Annotation.IsLinkerColumn]: StringifiedJson<boolean>;\n    [Annotation.IsSubset]: StringifiedJson<boolean>;\n    [Annotation.Label]: string;\n    [Annotation.Max]: StringifiedJson<number>;\n    [Annotation.Min]: StringifiedJson<number>;\n    [Annotation.MultipliesBy]: StringifiedJson<AxisSpec[\"name\"][]>;\n    [Annotation.Parents]: StringifiedJson<AxisSpec[\"name\"][]>;\n    [Annotation.Sequence.Annotation.Mapping]: StringifiedJson<Record<string, string>>;\n    [Annotation.Sequence.IsAnnotation]: StringifiedJson<boolean>;\n    [Annotation.Table.FontFamily]: string;\n    [Annotation.Table.OrderPriority]: StringifiedJson<number>;\n    [Annotation.Table.Visibility]: \"hidden\" | \"optional\" | (string & {});\n    [Annotation.Trace]: StringifiedJson<Record<string, unknown>>;\n    [Annotation.VDJ.IsAssemblingFeature]: StringifiedJson<boolean>;\n  }>;\n\n// export const AxisSpec = z.object({\n//   type: z.nativeEnum(ValueType),\n//   name: z.string(),\n//   domain: z.record(z.string(), z.string()).optional(),\n//   annotations: z.record(z.string(), z.string()).optional(),\n//   parentAxes: z.array(z.number()).optional(),\n// }).passthrough();\n//\n// type Expect<T extends true> = T;\n// type Equal<X, Y> =\n// (<T>() => T extends X ? 1 : 2) extends (<T>() => T extends Y ? 1 : 2) ? true : false;\n//\n// type _test = Expect<Equal<\n//   Readonly<z.infer<typeof AxisSpec>>,\n//   Readonly<AxisSpec & Record<string, unknown>>\n// >>;\n\nexport type AnnotationJson = MetadataJson<Annotation>;\n\nconst ValueTypeSchema = z.enum([\"Int\", \"Long\", \"Float\", \"Double\", \"String\"] as const);\nexport const AnnotationJson: AnnotationJson = {\n  [Annotation.DiscreteValues]: z.array(z.string()).or(z.array(z.number())),\n  [Annotation.Graph.Axis.HighCardinality]: z.boolean(),\n  [Annotation.Graph.Axis.LowerLimit]: z.number(),\n  [Annotation.Graph.Axis.UpperLimit]: z.number(),\n  [Annotation.Graph.Axis.SymmetricRange]: z.boolean(),\n  [Annotation.Graph.IsDenseAxis]: z.boolean(),\n  [Annotation.Graph.Palette]: z.object({ mapping: z.record(z.number()), name: z.string() }),\n  [Annotation.Graph.Thresholds]: z.array(\n    z.object({\n      columnId: z.object({ valueType: ValueTypeSchema, name: z.string() }),\n      value: z.number(),\n    }),\n  ),\n  [Annotation.Graph.TreatAbsentValuesAs]: z.number(),\n  [Annotation.Graph.IsVirtual]: z.boolean(),\n  [Annotation.HideDataFromUi]: z.boolean(),\n  [Annotation.HideDataFromGraphs]: z.boolean(),\n  [Annotation.IsDiscreteFilter]: z.boolean(),\n  [Annotation.IsLinkerColumn]: z.boolean(),\n  [Annotation.IsSubset]: z.boolean(),\n  [Annotation.Max]: z.number(),\n  [Annotation.Min]: z.number(),\n  [Annotation.MultipliesBy]: z.array(z.string()),\n  [Annotation.Parents]: z.array(z.string()),\n  [Annotation.Sequence.Annotation.Mapping]: z.record(z.string(), z.string()),\n  [Annotation.Sequence.IsAnnotation]: z.boolean(),\n  [Annotation.Table.OrderPriority]: z.number(),\n  [Annotation.Trace]: z.record(z.string(), z.unknown()),\n  [Annotation.VDJ.IsAssemblingFeature]: z.boolean(),\n};\n\n/// Helper function for reading plain annotation values\nexport function readAnnotation<T extends keyof Annotation>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): Annotation[T] | undefined {\n  return readMetadata<Annotation, T>(spec?.annotations, key);\n}\n\n/// Helper function for reading json-encoded annotation values, throws on JSON parsing error\nexport function readAnnotationJsonOrThrow<T extends keyof AnnotationJson>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<AnnotationJson[T]> | undefined {\n  return readMetadataJsonOrThrow<Annotation, T>(\n    spec?.annotations,\n    AnnotationJson,\n    key,\n    \"readAnnotationJsonOrThrow\",\n  );\n}\n\n/// Helper function for reading json-encoded annotation values, returns undefined on JSON parsing error\nexport function readAnnotationJson<T extends keyof AnnotationJson>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<AnnotationJson[T]> | undefined {\n  return readMetadataJson<Annotation, T>(spec?.annotations, AnnotationJson, key);\n}\n\nexport function isLinkerColumn(column: PColumnSpec): boolean {\n  return !!readAnnotationJson(column, Annotation.IsLinkerColumn);\n}\n\n/**\n * Specification of an individual axis.\n *\n * Each axis is a part of a composite key that addresses data inside the PColumn.\n *\n * Each record inside a PColumn is addressed by a unique tuple of values set for\n * all the axes specified in the column spec.\n */\nexport type AxisSpec = {\n  /** Type of the axis value. Should not use non-key types like float or double. */\n  readonly type: ValueType;\n\n  /** Name of the axis */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** Any additional information attached to the axis that does not affect its\n   * identifier */\n  readonly annotations?: Record<string, string>;\n\n  /**\n   * Parent axes provide contextual grouping for the axis in question, establishing\n   * a hierarchy where the current axis is dependent on one or more axes for its\n   * full definition and meaning. For instance, in a data structure where each\n   * \"container\" axis may contain multiple \"item\" axes, the `item` axis would\n   * list the index of the `container` axis in this field to denote its dependency.\n   *\n   * This means that the identity or significance of the `item` axis is only\n   * interpretable when combined with its parent `container` axis. An `item` axis\n   * index by itself may be non-unique and only gains uniqueness within the context\n   * of its parent `container`. Therefore, the `parentAxes` field is essential for\n   * mapping these relationships and ensuring data coherence across nested or\n   * multi-level data models.\n   *\n   * A list of zero-based indices of parent axes in the overall axes specification\n   * from the column spec. Each index corresponds to the position of a parent axis\n   * in the list that defines the structure of the data model.\n   */\n  readonly parentAxes?: number[];\n};\n\n/** Parents are specs, not indexes; normalized axis can be used considering its parents independently from column */\nexport interface AxisSpecNormalized extends Omit<AxisSpec, \"parentAxes\"> {\n  parentAxesSpec: AxisSpecNormalized[];\n}\n\n/** Tree: axis is a root, its parents are children */\nexport type AxisTree = {\n  axis: AxisSpecNormalized;\n  children: AxisTree[]; // parents\n};\n\nfunction makeAxisTree(axis: AxisSpecNormalized): AxisTree {\n  return { axis, children: [] };\n}\n\n/** Build tree by axis parents annotations */\nexport function getAxesTree(rootAxis: AxisSpecNormalized): AxisTree {\n  const root = makeAxisTree(rootAxis);\n  let nodesQ = [root];\n  while (nodesQ.length) {\n    const nextNodes: AxisTree[] = [];\n    for (const node of nodesQ) {\n      node.children = node.axis.parentAxesSpec.map(makeAxisTree);\n      nextNodes.push(...node.children);\n    }\n    nodesQ = nextNodes;\n  }\n  return root;\n}\n\n/** Get set of canonicalized axisIds from axisTree */\nexport function getSetFromAxisTree(tree: AxisTree): Set<CanonicalizedJson<AxisId>> {\n  const set = new Set([canonicalizeJson(getAxisId(tree.axis))]);\n  let nodesQ = [tree];\n  while (nodesQ.length) {\n    const nextNodes = [];\n    for (const node of nodesQ) {\n      for (const parent of node.children) {\n        set.add(canonicalizeJson(getAxisId(parent.axis)));\n        nextNodes.push(parent);\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return set;\n}\n\n/** Get array of axisSpecs from axisTree */\nexport function getArrayFromAxisTree(tree: AxisTree): AxisSpecNormalized[] {\n  const res = [tree.axis];\n  let nodesQ = [tree];\n  while (nodesQ.length) {\n    const nextNodes = [];\n    for (const node of nodesQ) {\n      for (const parent of node.children) {\n        res.push(parent.axis);\n        nextNodes.push(parent);\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return res;\n}\n\nexport function canonicalizeAxisWithParents(axis: AxisSpecNormalized) {\n  return canonicalizeJson(getArrayFromAxisTree(getAxesTree(axis)).map(getAxisId));\n}\n\nfunction normalizingAxesComparator(\n  axis1: AxisSpecNormalized,\n  axis2: AxisSpecNormalized,\n): 1 | -1 | 0 {\n  if (axis1.name !== axis2.name) {\n    return axis1.name < axis2.name ? 1 : -1;\n  }\n  if (axis1.type !== axis2.type) {\n    return axis1.type < axis2.type ? 1 : -1;\n  }\n  const domain1 = canonicalizeJson(axis1.domain ?? {});\n  const domain2 = canonicalizeJson(axis2.domain ?? {});\n  if (domain1 !== domain2) {\n    return domain1 < domain2 ? 1 : -1;\n  }\n\n  const parents1 = canonicalizeAxisWithParents(axis1);\n  const parents2 = canonicalizeAxisWithParents(axis2);\n\n  if (parents1 !== parents2) {\n    return parents1 < parents2 ? 1 : -1;\n  }\n\n  const annotation1 = canonicalizeJson(axis1.annotations ?? {});\n  const annotation2 = canonicalizeJson(axis2.annotations ?? {});\n  if (annotation1 !== annotation2) {\n    return annotation1 < annotation2 ? 1 : -1;\n  }\n  return 0;\n}\n\nfunction parseParentsFromAnnotations(axis: AxisSpec) {\n  const parentsList = readAnnotationJson(axis, Annotation.Parents);\n  if (parentsList === undefined) {\n    return [];\n  }\n  return parentsList;\n}\n\nfunction sortParentsDeep(axisSpec: AxisSpecNormalized) {\n  axisSpec.parentAxesSpec.forEach(sortParentsDeep);\n  axisSpec.parentAxesSpec.sort(normalizingAxesComparator);\n}\n\nfunction hasCycleOfParents(axisSpec: AxisSpecNormalized) {\n  const root = makeAxisTree(axisSpec);\n  let nodesQ = [root];\n  const ancestors = new Set(canonicalizeJson(getAxisId(axisSpec)));\n  while (nodesQ.length) {\n    const nextNodes: AxisTree[] = [];\n    const levelIds = new Set<CanonicalizedJson<AxisId>>();\n    for (const node of nodesQ) {\n      node.children = node.axis.parentAxesSpec.map(makeAxisTree);\n      for (const child of node.children) {\n        const childId = canonicalizeJson(getAxisId(child.axis));\n        if (!levelIds.has(childId)) {\n          nextNodes.push(child);\n          levelIds.add(childId);\n          if (ancestors.has(childId)) {\n            return true;\n          }\n          ancestors.add(childId);\n        }\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return false;\n}\n\n/** Create list of normalized axisSpec (parents are in array of specs, not indexes) */\nexport function getNormalizedAxesList(axes: AxisSpec[]): AxisSpecNormalized[] {\n  if (!axes.length) {\n    return [];\n  }\n  const modifiedAxes: AxisSpecNormalized[] = axes.map((axis) => {\n    const { parentAxes: _, ...copiedRest } = axis;\n    return { ...copiedRest, annotations: { ...copiedRest.annotations }, parentAxesSpec: [] };\n  });\n\n  axes.forEach((axis, idx) => {\n    const modifiedAxis = modifiedAxes[idx];\n    if (axis.parentAxes) {\n      // if we have parents by indexes then take from the list\n      modifiedAxis.parentAxesSpec = axis.parentAxes.map((idx) => modifiedAxes[idx]);\n    } else {\n      // else try to parse from annotation name\n      const parents = parseParentsFromAnnotations(axis).map((name) =>\n        modifiedAxes.find((axis) => axis.name === name),\n      );\n      modifiedAxis.parentAxesSpec = parents.some((p) => p === undefined)\n        ? []\n        : (parents as AxisSpecNormalized[]);\n\n      delete modifiedAxis.annotations?.[Annotation.Parents];\n    }\n  });\n\n  if (modifiedAxes.some(hasCycleOfParents)) {\n    // Axes list is broken\n    modifiedAxes.forEach((axis) => {\n      axis.parentAxesSpec = [];\n    });\n  } else {\n    modifiedAxes.forEach((axis) => {\n      sortParentsDeep(axis);\n    });\n  }\n\n  return modifiedAxes;\n}\n\n/** Create list of regular axisSpec from normalized (parents are indexes, inside of current axes list) */\nexport function getDenormalizedAxesList(axesSpec: AxisSpecNormalized[]): AxisSpec[] {\n  const idsList = axesSpec.map((axisSpec) => canonicalizeJson(getAxisId(axisSpec)));\n  return axesSpec.map((axisSpec) => {\n    const parentsIds = axisSpec.parentAxesSpec.map((axisSpec) =>\n      canonicalizeJson(getAxisId(axisSpec)),\n    );\n    const parentIdxs = parentsIds.map((id) => idsList.indexOf(id));\n    const { parentAxesSpec: _, ...copiedRest } = axisSpec;\n    if (parentIdxs.length) {\n      return { ...copiedRest, parentAxes: parentIdxs } as AxisSpec;\n    }\n    return copiedRest;\n  });\n}\n\n/** Common type representing spec for all the axes in a column */\nexport type AxesSpec = AxisSpec[];\n\n/// Well-known column names\nexport const PColumnName = {\n  Label: \"pl7.app/label\",\n  Table: {\n    RowSelection: \"pl7.app/table/row-selection\",\n  },\n  VDJ: {\n    LeadSelection: \"pl7.app/vdj/lead-selection\",\n    RankingOrder: \"pl7.app/vdj/ranking-order\",\n    Sequence: \"pl7.app/vdj/sequence\",\n  },\n} as const;\n\n/// Well-known axis names\nexport const PAxisName = {\n  SampleId: \"pl7.app/sampleId\",\n  VDJ: {\n    Assay: {\n      SequenceId: \"pl7.app/vdj/assay/sequenceId\",\n    },\n    ClusterId: \"pl7.app/vdj/clusterId\",\n    ClonotypeKey: \"pl7.app/vdj/clonotypeKey\",\n    ScClonotypeKey: \"pl7.app/vdj/scClonotypeKey\",\n  },\n} as const;\n\nexport function isLabelColumn(column: PColumnSpec) {\n  return column.axesSpec.length === 1 && column.name === PColumnName.Label;\n}\n\n/**\n * Full column specification including all axes specs and specs of the column\n * itself.\n *\n * A PColumn in its essence represents a mapping from a fixed size, explicitly\n * typed tuple to an explicitly typed value.\n *\n * (axis1Value1, axis2Value1, ...) -> columnValue\n *\n * Each element in tuple correspond to the axis having the same index in axesSpec.\n */\nexport type PUniversalColumnSpec = PObjectSpec & {\n  /** Defines specific type of BObject, the most generic type of unit of\n   * information in Platforma Project. */\n  readonly kind: \"PColumn\";\n\n  /** Type of column values */\n  readonly valueType: string;\n\n  /** Column name */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** Any additional information attached to the column that does not affect its\n   * identifier */\n  readonly annotations?: Record<string, string>;\n\n  /** A list of zero-based indices of parent axes from the {@link axesSpec} array. */\n  readonly parentAxes?: number[];\n\n  /** Axes specifications */\n  readonly axesSpec: AxesSpec;\n};\n\n/**\n * Specification of a data column.\n *\n * Data column is a specialized type of PColumn that stores only simple values (strings and numbers)\n * addressed by multiple keys. This is in contrast to other PColumn variants that can store more complex\n * values like files or other abstract data types. Data columns are optimized for storing and processing\n * basic tabular data.\n */\nexport type PDataColumnSpec = PUniversalColumnSpec & {\n  /** Type of column values */\n  readonly valueType: ValueType;\n};\n\n// @todo: change this to PUniversalColumnSpec\nexport type PColumnSpec = PDataColumnSpec;\n\n/** Unique PColumnSpec identifier */\nexport type PColumnSpecId = {\n  /** Defines specific type of BObject, the most generic type of unit of\n   * information in Platforma Project. */\n  readonly kind: \"PColumn\";\n\n  /** Type of column values */\n  readonly valueType: ValueType;\n\n  /** Column name */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** A list of zero-based indices of parent axes from the {@link axesSpec} array. */\n  readonly parentAxes?: number[];\n\n  /** Axes id */\n  readonly axesId: AxesId;\n};\n\nexport function getPColumnSpecId(spec: PColumnSpec): PColumnSpecId {\n  return {\n    kind: spec.kind,\n    valueType: spec.valueType,\n    name: spec.name,\n    domain: spec.domain,\n    parentAxes: spec.parentAxes,\n    axesId: getAxesId(spec.axesSpec),\n  };\n}\n\nexport interface PColumn<Data> extends PObject<Data> {\n  /** PColumn spec, allowing it to be found among other PObjects */\n  readonly spec: PColumnSpec;\n}\n\nexport type PColumnLazy<T> = PColumn<() => T>;\n\n/** Columns in a PFrame also have internal identifier, this object represents\n * combination of specs and such id */\nexport interface PColumnIdAndSpec {\n  /** Internal column id within the PFrame */\n  readonly columnId: PObjectId;\n\n  /** Column spec */\n  readonly spec: PColumnSpec;\n}\n\n/** Get column id and spec from a column */\nexport function getColumnIdAndSpec<Data>(column: PColumn<Data>): PColumnIdAndSpec {\n  return {\n    columnId: column.id,\n    spec: column.spec,\n  };\n}\n\n/** Information returned by {@link PFrame.listColumns} method */\nexport interface PColumnInfo extends PColumnIdAndSpec {\n  /** True if data was associated with this PColumn */\n  readonly hasData: boolean;\n}\n\nexport interface AxisId {\n  /** Type of the axis or column value. For an axis should not use non-key\n   * types like float or double. */\n  readonly type: ValueType;\n\n  /** Name of the axis or column */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis or column name and type to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n}\n\n/** Array of axis ids */\nexport type AxesId = AxisId[];\n\n/** Extracts axis ids from axis spec */\nexport function getAxisId(spec: AxisSpec): AxisId {\n  const { type, name, domain } = spec;\n  const result = { type, name };\n  if (domain && Object.entries(domain).length > 0) {\n    Object.assign(result, { domain });\n  }\n  return result;\n}\n\n/** Extracts axes ids from axes spec array from column spec */\nexport function getAxesId(spec: AxesSpec): AxesId {\n  return spec.map(getAxisId);\n}\n\n/** Canonicalizes axis id */\nexport function canonicalizeAxisId(id: AxisId): CanonicalizedJson<AxisId> {\n  return canonicalizeJson(getAxisId(id));\n}\n\n/** Returns true if all domains from query are found in target */\nfunction matchDomain(query?: Record<string, string>, target?: Record<string, string>) {\n  if (query === undefined) return target === undefined;\n  if (target === undefined) return true;\n  for (const k in target) {\n    if (query[k] !== target[k]) return false;\n  }\n  return true;\n}\n\n/** Returns whether \"match\" axis id is compatible with the \"query\" */\nexport function matchAxisId(query: AxisId, target: AxisId): boolean {\n  return query.name === target.name && matchDomain(query.domain, target.domain);\n}\n\nexport function getTypeFromPColumnOrAxisSpec(spec: PColumnSpec | AxisSpec): ValueType {\n  return \"valueType\" in spec ? spec.valueType : spec.type;\n}\n\nexport function isAxisId(id: unknown): id is AxisId {\n  return typeof id === \"object\" && id !== null && \"name\" in id && \"type\" in 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\"pl7.app/max\",\n  Min: \"pl7.app/min\",\n  MultipliesBy: \"pl7.app/multipliesBy\",\n  Parents: \"pl7.app/parents\",\n  Score: {\n    DefaultCutoff: \"pl7.app/score/defaultCutoff\",\n    RankingOrder: \"pl7.app/score/rankingOrder\",\n  },\n  Sequence: {\n    Annotation: {\n      Mapping: \"pl7.app/sequence/annotation/mapping\",\n    },\n    IsAnnotation: \"pl7.app/sequence/isAnnotation\",\n  },\n  Table: {\n    FontFamily: \"pl7.app/table/fontFamily\",\n    OrderPriority: \"pl7.app/table/orderPriority\",\n    Visibility: \"pl7.app/table/visibility\",\n  },\n  Trace: \"pl7.app/trace\",\n  VDJ: {\n    IsAssemblingFeature: \"pl7.app/vdj/isAssemblingFeature\",\n    IsMainSequence: \"pl7.app/vdj/isMainSequence\",\n  },\n} as const;\n\nexport type Annotation = Metadata &\n  Partial<{\n    [Annotation.Alphabet]: \"nucleotide\" | \"aminoacid\" | (string & {});\n    [Annotation.AxisNature]: \"homogeneous\" | \"heterogeneous\" | \"scaleCompatible\" | (string & {});\n    [Annotation.Description]: string;\n    [Annotation.DiscreteValues]: StringifiedJson<number[]> | StringifiedJson<string[]>;\n    [Annotation.Format]: string;\n    [Annotation.Graph.Axis.HighCardinality]: StringifiedJson<boolean>;\n    [Annotation.Graph.Axis.LowerLimit]: StringifiedJson<number>;\n    [Annotation.Graph.Axis.SymmetricRange]: StringifiedJson<boolean>;\n    [Annotation.Graph.Axis.UpperLimit]: StringifiedJson<number>;\n    [Annotation.Graph.IsDenseAxis]: StringifiedJson<boolean>;\n    [Annotation.Graph.IsVirtual]: StringifiedJson<boolean>;\n    [Annotation.Graph.Palette]: StringifiedJson<{ mapping: Record<string, number>; name: string }>;\n    [Annotation.Graph.Thresholds]: StringifiedJson<\n      { columnId: { valueType: ValueType; name: string }; value: number }[]\n    >;\n    [Annotation.Graph.TreatAbsentValuesAs]: StringifiedJson<number>;\n    [Annotation.HideDataFromGraphs]: StringifiedJson<boolean>;\n    [Annotation.HideDataFromUi]: StringifiedJson<boolean>;\n    [Annotation.IsDiscreteFilter]: StringifiedJson<boolean>;\n    [Annotation.IsLinkerColumn]: StringifiedJson<boolean>;\n    [Annotation.IsSubset]: StringifiedJson<boolean>;\n    [Annotation.Label]: string;\n    [Annotation.Max]: StringifiedJson<number>;\n    [Annotation.Min]: StringifiedJson<number>;\n    [Annotation.MultipliesBy]: StringifiedJson<AxisSpec[\"name\"][]>;\n    [Annotation.Parents]: StringifiedJson<AxisSpec[\"name\"][]>;\n    [Annotation.Sequence.Annotation.Mapping]: StringifiedJson<Record<string, string>>;\n    [Annotation.Sequence.IsAnnotation]: StringifiedJson<boolean>;\n    [Annotation.Table.FontFamily]: string;\n    [Annotation.Table.OrderPriority]: StringifiedJson<number>;\n    [Annotation.Table.Visibility]: \"hidden\" | \"optional\" | (string & {});\n    [Annotation.Trace]: StringifiedJson<Record<string, unknown>>;\n    [Annotation.VDJ.IsAssemblingFeature]: StringifiedJson<boolean>;\n  }>;\n\n// export const AxisSpec = z.object({\n//   type: z.nativeEnum(ValueType),\n//   name: z.string(),\n//   domain: z.record(z.string(), z.string()).optional(),\n//   annotations: z.record(z.string(), z.string()).optional(),\n//   parentAxes: z.array(z.number()).optional(),\n// }).passthrough();\n//\n// type Expect<T extends true> = T;\n// type Equal<X, Y> =\n// (<T>() => T extends X ? 1 : 2) extends (<T>() => T extends Y ? 1 : 2) ? true : false;\n//\n// type _test = Expect<Equal<\n//   Readonly<z.infer<typeof AxisSpec>>,\n//   Readonly<AxisSpec & Record<string, unknown>>\n// >>;\n\nexport type AnnotationJson = MetadataJson<Annotation>;\n\nconst ValueTypeSchema = z.enum([\"Int\", \"Long\", \"Float\", \"Double\", \"String\"] as const);\nexport const AnnotationJson: AnnotationJson = {\n  [Annotation.DiscreteValues]: z.array(z.string()).or(z.array(z.number())),\n  [Annotation.Graph.Axis.HighCardinality]: z.boolean(),\n  [Annotation.Graph.Axis.LowerLimit]: z.number(),\n  [Annotation.Graph.Axis.UpperLimit]: z.number(),\n  [Annotation.Graph.Axis.SymmetricRange]: z.boolean(),\n  [Annotation.Graph.IsDenseAxis]: z.boolean(),\n  [Annotation.Graph.Palette]: z.object({ mapping: z.record(z.number()), name: z.string() }),\n  [Annotation.Graph.Thresholds]: z.array(\n    z.object({\n      columnId: z.object({ valueType: ValueTypeSchema, name: z.string() }),\n      value: z.number(),\n    }),\n  ),\n  [Annotation.Graph.TreatAbsentValuesAs]: z.number(),\n  [Annotation.Graph.IsVirtual]: z.boolean(),\n  [Annotation.HideDataFromUi]: z.boolean(),\n  [Annotation.HideDataFromGraphs]: z.boolean(),\n  [Annotation.IsDiscreteFilter]: z.boolean(),\n  [Annotation.IsLinkerColumn]: z.boolean(),\n  [Annotation.IsSubset]: z.boolean(),\n  [Annotation.Max]: z.number(),\n  [Annotation.Min]: z.number(),\n  [Annotation.MultipliesBy]: z.array(z.string()),\n  [Annotation.Parents]: z.array(z.string()),\n  [Annotation.Sequence.Annotation.Mapping]: z.record(z.string(), z.string()),\n  [Annotation.Sequence.IsAnnotation]: z.boolean(),\n  [Annotation.Table.OrderPriority]: z.number(),\n  [Annotation.Trace]: z.record(z.string(), z.unknown()),\n  [Annotation.VDJ.IsAssemblingFeature]: z.boolean(),\n};\n\n/// Helper function for reading plain annotation values\nexport function readAnnotation<T extends keyof Annotation>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): Annotation[T] | undefined {\n  return readMetadata<Annotation, T>(spec?.annotations, key);\n}\n\n/// Helper function for reading json-encoded annotation values, throws on JSON parsing error\nexport function readAnnotationJsonOrThrow<T extends keyof AnnotationJson>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<AnnotationJson[T]> | undefined {\n  return readMetadataJsonOrThrow<Annotation, T>(\n    spec?.annotations,\n    AnnotationJson,\n    key,\n    \"readAnnotationJsonOrThrow\",\n  );\n}\n\n/// Helper function for reading json-encoded annotation values, returns undefined on JSON parsing error\nexport function readAnnotationJson<T extends keyof AnnotationJson>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<AnnotationJson[T]> | undefined {\n  return readMetadataJson<Annotation, T>(spec?.annotations, AnnotationJson, key);\n}\n\nexport function isLinkerColumn(column: PColumnSpec): boolean {\n  return !!readAnnotationJson(column, Annotation.IsLinkerColumn);\n}\n\n/**\n * Specification of an individual axis.\n *\n * Each axis is a part of a composite key that addresses data inside the PColumn.\n *\n * Each record inside a PColumn is addressed by a unique tuple of values set for\n * all the axes specified in the column spec.\n */\nexport type AxisSpec = {\n  /** Type of the axis value. Should not use non-key types like float or double. */\n  readonly type: ValueType;\n\n  /** Name of the axis */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** Context domain provides additional axis identity that is matched\n   * by kinship rules (subset/superset/overlap) rather than exact equality */\n  readonly contextDomain?: Record<string, string>;\n\n  /** Any additional information attached to the axis that does not affect its\n   * identifier */\n  readonly annotations?: Record<string, string>;\n\n  /**\n   * Parent axes provide contextual grouping for the axis in question, establishing\n   * a hierarchy where the current axis is dependent on one or more axes for its\n   * full definition and meaning. For instance, in a data structure where each\n   * \"container\" axis may contain multiple \"item\" axes, the `item` axis would\n   * list the index of the `container` axis in this field to denote its dependency.\n   *\n   * This means that the identity or significance of the `item` axis is only\n   * interpretable when combined with its parent `container` axis. An `item` axis\n   * index by itself may be non-unique and only gains uniqueness within the context\n   * of its parent `container`. Therefore, the `parentAxes` field is essential for\n   * mapping these relationships and ensuring data coherence across nested or\n   * multi-level data models.\n   *\n   * A list of zero-based indices of parent axes in the overall axes specification\n   * from the column spec. Each index corresponds to the position of a parent axis\n   * in the list that defines the structure of the data model.\n   */\n  readonly parentAxes?: number[];\n};\n\n/** Parents are specs, not indexes; normalized axis can be used considering its parents independently from column */\nexport interface AxisSpecNormalized extends Omit<AxisSpec, \"parentAxes\"> {\n  parentAxesSpec: AxisSpecNormalized[];\n}\n\n/** Tree: axis is a root, its parents are children */\nexport type AxisTree = {\n  axis: AxisSpecNormalized;\n  children: AxisTree[]; // parents\n};\n\nfunction makeAxisTree(axis: AxisSpecNormalized): AxisTree {\n  return { axis, children: [] };\n}\n\n/** Build tree by axis parents annotations */\nexport function getAxesTree(rootAxis: AxisSpecNormalized): AxisTree {\n  const root = makeAxisTree(rootAxis);\n  let nodesQ = [root];\n  while (nodesQ.length) {\n    const nextNodes: AxisTree[] = [];\n    for (const node of nodesQ) {\n      node.children = node.axis.parentAxesSpec.map(makeAxisTree);\n      nextNodes.push(...node.children);\n    }\n    nodesQ = nextNodes;\n  }\n  return root;\n}\n\n/** Get set of canonicalized axisIds from axisTree */\nexport function getSetFromAxisTree(tree: AxisTree): Set<CanonicalizedJson<AxisId>> {\n  const set = new Set([canonicalizeJson(getAxisId(tree.axis))]);\n  let nodesQ = [tree];\n  while (nodesQ.length) {\n    const nextNodes = [];\n    for (const node of nodesQ) {\n      for (const parent of node.children) {\n        set.add(canonicalizeJson(getAxisId(parent.axis)));\n        nextNodes.push(parent);\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return set;\n}\n\n/** Get array of axisSpecs from axisTree */\nexport function getArrayFromAxisTree(tree: AxisTree): AxisSpecNormalized[] {\n  const res = [tree.axis];\n  let nodesQ = [tree];\n  while (nodesQ.length) {\n    const nextNodes = [];\n    for (const node of nodesQ) {\n      for (const parent of node.children) {\n        res.push(parent.axis);\n        nextNodes.push(parent);\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return res;\n}\n\nexport function canonicalizeAxisWithParents(axis: AxisSpecNormalized) {\n  return canonicalizeJson(getArrayFromAxisTree(getAxesTree(axis)).map(getAxisId));\n}\n\nfunction normalizingAxesComparator(\n  axis1: AxisSpecNormalized,\n  axis2: AxisSpecNormalized,\n): 1 | -1 | 0 {\n  if (axis1.name !== axis2.name) {\n    return axis1.name < axis2.name ? 1 : -1;\n  }\n  if (axis1.type !== axis2.type) {\n    return axis1.type < axis2.type ? 1 : -1;\n  }\n  const domain1 = canonicalizeJson(axis1.domain ?? {});\n  const domain2 = canonicalizeJson(axis2.domain ?? {});\n  if (domain1 !== domain2) {\n    return domain1 < domain2 ? 1 : -1;\n  }\n\n  const contextDomain1 = canonicalizeJson(axis1.contextDomain ?? {});\n  const contextDomain2 = canonicalizeJson(axis2.contextDomain ?? {});\n  if (contextDomain1 !== contextDomain2) {\n    return contextDomain1 < contextDomain2 ? 1 : -1;\n  }\n\n  const parents1 = canonicalizeAxisWithParents(axis1);\n  const parents2 = canonicalizeAxisWithParents(axis2);\n\n  if (parents1 !== parents2) {\n    return parents1 < parents2 ? 1 : -1;\n  }\n\n  const annotation1 = canonicalizeJson(axis1.annotations ?? {});\n  const annotation2 = canonicalizeJson(axis2.annotations ?? {});\n  if (annotation1 !== annotation2) {\n    return annotation1 < annotation2 ? 1 : -1;\n  }\n  return 0;\n}\n\nfunction parseParentsFromAnnotations(axis: AxisSpec) {\n  const parentsList = readAnnotationJson(axis, Annotation.Parents);\n  if (parentsList === undefined) {\n    return [];\n  }\n  return parentsList;\n}\n\nfunction sortParentsDeep(axisSpec: AxisSpecNormalized) {\n  axisSpec.parentAxesSpec.forEach(sortParentsDeep);\n  axisSpec.parentAxesSpec.sort(normalizingAxesComparator);\n}\n\nfunction hasCycleOfParents(axisSpec: AxisSpecNormalized) {\n  const root = makeAxisTree(axisSpec);\n  let nodesQ = [root];\n  const ancestors = new Set(canonicalizeJson(getAxisId(axisSpec)));\n  while (nodesQ.length) {\n    const nextNodes: AxisTree[] = [];\n    const levelIds = new Set<CanonicalizedJson<AxisId>>();\n    for (const node of nodesQ) {\n      node.children = node.axis.parentAxesSpec.map(makeAxisTree);\n      for (const child of node.children) {\n        const childId = canonicalizeJson(getAxisId(child.axis));\n        if (!levelIds.has(childId)) {\n          nextNodes.push(child);\n          levelIds.add(childId);\n          if (ancestors.has(childId)) {\n            return true;\n          }\n          ancestors.add(childId);\n        }\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return false;\n}\n\n/** Create list of normalized axisSpec (parents are in array of specs, not indexes) */\nexport function getNormalizedAxesList(axes: AxisSpec[]): AxisSpecNormalized[] {\n  if (!axes.length) {\n    return [];\n  }\n  const modifiedAxes: AxisSpecNormalized[] = axes.map((axis) => {\n    const { parentAxes: _, ...copiedRest } = axis;\n    return { ...copiedRest, annotations: { ...copiedRest.annotations }, parentAxesSpec: [] };\n  });\n\n  axes.forEach((axis, idx) => {\n    const modifiedAxis = modifiedAxes[idx];\n    if (axis.parentAxes) {\n      // if we have parents by indexes then take from the list\n      modifiedAxis.parentAxesSpec = axis.parentAxes.map((idx) => modifiedAxes[idx]);\n    } else {\n      // else try to parse from annotation name\n      const parents = parseParentsFromAnnotations(axis).map((name) =>\n        modifiedAxes.find((axis) => axis.name === name),\n      );\n      modifiedAxis.parentAxesSpec = parents.some((p) => p === undefined)\n        ? []\n        : (parents as AxisSpecNormalized[]);\n\n      delete modifiedAxis.annotations?.[Annotation.Parents];\n    }\n  });\n\n  if (modifiedAxes.some(hasCycleOfParents)) {\n    // Axes list is broken\n    modifiedAxes.forEach((axis) => {\n      axis.parentAxesSpec = [];\n    });\n  } else {\n    modifiedAxes.forEach((axis) => {\n      sortParentsDeep(axis);\n    });\n  }\n\n  return modifiedAxes;\n}\n\n/** Create list of regular axisSpec from normalized (parents are indexes, inside of current axes list) */\nexport function getDenormalizedAxesList(axesSpec: AxisSpecNormalized[]): AxisSpec[] {\n  const idsList = axesSpec.map((axisSpec) => canonicalizeJson(getAxisId(axisSpec)));\n  return axesSpec.map((axisSpec) => {\n    const parentsIds = axisSpec.parentAxesSpec.map((axisSpec) =>\n      canonicalizeJson(getAxisId(axisSpec)),\n    );\n    const parentIdxs = parentsIds.map((id) => idsList.indexOf(id));\n    const { parentAxesSpec: _, ...copiedRest } = axisSpec;\n    if (parentIdxs.length) {\n      return { ...copiedRest, parentAxes: parentIdxs } as AxisSpec;\n    }\n    return copiedRest;\n  });\n}\n\n/** Common type representing spec for all the axes in a column */\nexport type AxesSpec = AxisSpec[];\n\n/// Well-known column names\nexport const PColumnName = {\n  Label: \"pl7.app/label\",\n  Table: {\n    RowSelection: \"pl7.app/table/row-selection\",\n  },\n  VDJ: {\n    LeadSelection: \"pl7.app/vdj/lead-selection\",\n    RankingOrder: \"pl7.app/vdj/ranking-order\",\n    Sequence: \"pl7.app/vdj/sequence\",\n  },\n} as const;\n\n/// Well-known axis names\nexport const PAxisName = {\n  SampleId: \"pl7.app/sampleId\",\n  VDJ: {\n    Assay: {\n      SequenceId: \"pl7.app/vdj/assay/sequenceId\",\n    },\n    ClusterId: \"pl7.app/vdj/clusterId\",\n    ClonotypeKey: \"pl7.app/vdj/clonotypeKey\",\n    ScClonotypeKey: \"pl7.app/vdj/scClonotypeKey\",\n  },\n} as const;\n\nexport function isLabelColumn(column: PColumnSpec) {\n  return column.axesSpec.length === 1 && column.name === PColumnName.Label;\n}\n\n/**\n * Full column specification including all axes specs and specs of the column\n * itself.\n *\n * A PColumn in its essence represents a mapping from a fixed size, explicitly\n * typed tuple to an explicitly typed value.\n *\n * (axis1Value1, axis2Value1, ...) -> columnValue\n *\n * Each element in tuple correspond to the axis having the same index in axesSpec.\n */\nexport type PUniversalColumnSpec = PObjectSpec & {\n  /** Defines specific type of BObject, the most generic type of unit of\n   * information in Platforma Project. */\n  readonly kind: \"PColumn\";\n\n  /** Type of column values */\n  readonly valueType: string;\n\n  /** Column name */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** Context domain provides additional column identity that is matched\n   * by kinship rules (subset/superset/overlap) rather than exact equality */\n  readonly contextDomain?: Record<string, string>;\n\n  /** Any additional information attached to the column that does not affect its\n   * identifier */\n  readonly annotations?: Record<string, string>;\n\n  /** A list of zero-based indices of parent axes from the {@link axesSpec} array. */\n  readonly parentAxes?: number[];\n\n  /** Axes specifications */\n  readonly axesSpec: AxesSpec;\n};\n\n/**\n * Specification of a data column.\n *\n * Data column is a specialized type of PColumn that stores only simple values (strings and numbers)\n * addressed by multiple keys. This is in contrast to other PColumn variants that can store more complex\n * values like files or other abstract data types. Data columns are optimized for storing and processing\n * basic tabular data.\n */\nexport type PDataColumnSpec = PUniversalColumnSpec & {\n  /** Type of column values */\n  readonly valueType: ValueType;\n};\n\n// @todo: change this to PUniversalColumnSpec\nexport type PColumnSpec = PDataColumnSpec;\n\n/** Unique PColumnSpec identifier */\nexport type PColumnSpecId = {\n  /** Defines specific type of BObject, the most generic type of unit of\n   * information in Platforma Project. */\n  readonly kind: \"PColumn\";\n\n  /** Type of column values */\n  readonly valueType: ValueType;\n\n  /** Column name */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** Context domain provides additional column identity that is matched\n   * by kinship rules (subset/superset/overlap) rather than exact equality */\n  readonly contextDomain?: Record<string, string>;\n\n  /** A list of zero-based indices of parent axes from the {@link axesSpec} array. */\n  readonly parentAxes?: number[];\n\n  /** Axes id */\n  readonly axesId: AxesId;\n};\n\nexport function getPColumnSpecId(spec: PColumnSpec): PColumnSpecId {\n  return {\n    kind: spec.kind,\n    valueType: spec.valueType,\n    name: spec.name,\n    domain: spec.domain,\n    contextDomain: spec.contextDomain,\n    parentAxes: spec.parentAxes,\n    axesId: getAxesId(spec.axesSpec),\n  };\n}\n\nexport interface PColumn<Data> extends PObject<Data> {\n  /** PColumn spec, allowing it to be found among other PObjects */\n  readonly spec: PColumnSpec;\n}\n\nexport type PColumnLazy<T> = PColumn<() => T>;\n\n/** Columns in a PFrame also have internal identifier, this object represents\n * combination of specs and such id */\nexport interface PColumnIdAndSpec {\n  /** Internal column id within the PFrame */\n  readonly columnId: PObjectId;\n\n  /** Column spec */\n  readonly spec: PColumnSpec;\n}\n\n/** Get column id and spec from a column */\nexport function getColumnIdAndSpec<Data>(column: PColumn<Data>): PColumnIdAndSpec {\n  return {\n    columnId: column.id,\n    spec: column.spec,\n  };\n}\n\n/** Information returned by {@link PFrame.listColumns} method */\nexport interface PColumnInfo extends PColumnIdAndSpec {\n  /** True if data was associated with this PColumn */\n  readonly hasData: boolean;\n}\n\nexport interface AxisId {\n  /** Type of the axis or column value. For an axis should not use non-key\n   * types like float or double. */\n  readonly type: ValueType;\n\n  /** Name of the axis or column */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis or column name and type to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** Context domain provides additional axis identity that is matched\n   * by kinship rules (subset/superset/overlap) rather than exact equality */\n  readonly contextDomain?: Record<string, string>;\n}\n\n/** Array of axis ids */\nexport type AxesId = AxisId[];\n\n/** Extracts axis ids from axis spec */\nexport function getAxisId(spec: AxisSpec): AxisId {\n  const { type, name, domain, contextDomain } = spec;\n  const result: AxisId = { type, name };\n  if (domain && Object.entries(domain).length > 0) {\n    Object.assign(result, { domain });\n  }\n  if (contextDomain && Object.entries(contextDomain).length > 0) {\n    Object.assign(result, { contextDomain });\n  }\n  return result;\n}\n\n/** Extracts axes ids from axes spec array from column spec */\nexport function getAxesId(spec: AxesSpec): AxesId {\n  return spec.map(getAxisId);\n}\n\n/** Canonicalizes axis id */\nexport function canonicalizeAxisId(id: AxisId): CanonicalizedJson<AxisId> {\n  return canonicalizeJson(getAxisId(id));\n}\n\n/** Returns true if all domains from query are found in target */\nfunction matchDomain(query?: Record<string, string>, target?: Record<string, string>) {\n  if (query === undefined) return target === undefined;\n  if (target === undefined) return true;\n  for (const k in target) {\n    if (query[k] !== target[k]) return false;\n  }\n  return true;\n}\n\n/** Returns whether \"match\" axis id is compatible with the \"query\" */\nexport function matchAxisId(query: AxisId, target: AxisId): boolean {\n  return (\n    query.name === target.name &&\n    matchDomain(query.domain, target.domain) &&\n    matchDomain(query.contextDomain, target.contextDomain)\n  );\n}\n\nexport function getTypeFromPColumnOrAxisSpec(spec: PColumnSpec | AxisSpec): ValueType {\n  return \"valueType\" in spec ? spec.valueType : spec.type;\n}\n\nexport function isAxisId(id: unknown): id is AxisId {\n  return typeof id === \"object\" && id !== null && \"name\" in id && \"type\" in 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package/dist/pool/query.cjs

@@ -17,7 +17,7 @@ function executePSpecPredicate(predicate, spec) {
 		case "name_pattern": return require_spec.isPColumnSpec(spec) && Boolean(spec.name.match(predicate.pattern));
 		case "annotation": return require_spec.isPColumnSpec(spec) && spec.annotations !== void 0 && spec.annotations[predicate.annotation] === predicate.value;
 		case "annotation_pattern": return require_spec.isPColumnSpec(spec) && spec.annotations !== void 0 && spec.annotations[predicate.annotation] !== void 0 && Boolean(spec.annotations[predicate.annotation].match(predicate.pattern));
-		case "has_axes": return require_spec.isPColumnSpec(spec) && predicate.axes.every((matcher) => spec.axesSpec.some((axisSpec) => (matcher.type === void 0 || matcher.type === axisSpec.type) && (matcher.name === void 0 || matcher.name === axisSpec.name) && (matcher.domain === void 0 || Object.keys(matcher.domain).length === 0 || axisSpec.domain !== void 0 && Object.entries(matcher.domain).every(([domain, domainValue]) => axisSpec.domain[domain] === domainValue))));
+		case "has_axes": return require_spec.isPColumnSpec(spec) && predicate.axes.every((matcher) => spec.axesSpec.some((axisSpec) => (matcher.type === void 0 || matcher.type === axisSpec.type) && (matcher.name === void 0 || matcher.name === axisSpec.name) && (matcher.domain === void 0 || Object.keys(matcher.domain).length === 0 || axisSpec.domain !== void 0 && Object.entries(matcher.domain).every(([domain, domainValue]) => axisSpec.domain[domain] === domainValue)) && (matcher.contextDomain === void 0 || Object.keys(matcher.contextDomain).length === 0 || axisSpec.contextDomain !== void 0 && Object.entries(matcher.contextDomain).every(([key, value]) => axisSpec.contextDomain[key] === value))));
 		default: assertNever(predicate);
 	}
 }

package/dist/pool/query.cjs.map

@@ -1 +1 @@
-{"version":3,"file":"query.cjs","names":["isPColumnSpec"],"sources":["../../src/pool/query.ts"],"sourcesContent":["import type { AxisId } from \"../drivers\";\nimport type { PObjectSpec } from \"./spec\";\nimport { isPColumnSpec } from \"./spec\";\n\nexport type PSpecPredicate =\n  | {\n      type: \"and\" | \"or\";\n      operands: PSpecPredicate[];\n    }\n  | {\n      type: \"not\";\n      operand: PSpecPredicate;\n    }\n  | {\n      type: \"name\";\n      name: string;\n    }\n  | {\n      type: \"name_pattern\";\n      pattern: string;\n    }\n  | {\n      type: \"annotation\";\n      annotation: string;\n      value: string;\n    }\n  | {\n      type: \"annotation_pattern\";\n      annotation: string;\n      pattern: string;\n    }\n  | {\n      type: \"has_axes\";\n      axes: Partial<AxisId>[];\n    };\n\nfunction assertNever(x: never): never {\n  throw new Error(\"Unexpected object: \" + x); // This is ok, because this is a possible runtime error\n}\n\nexport function executePSpecPredicate(predicate: PSpecPredicate, spec: PObjectSpec): boolean {\n  switch (predicate.type) {\n    case \"and\":\n      for (const operator of predicate.operands)\n        if (!executePSpecPredicate(operator, spec)) return false;\n      return true;\n    case \"or\":\n      for (const operator of predicate.operands)\n        if (executePSpecPredicate(operator, spec)) return true;\n      return false;\n    case \"not\":\n      return !executePSpecPredicate(predicate.operand, spec);\n    case \"name\":\n      return isPColumnSpec(spec) && spec.name === predicate.name;\n    case \"name_pattern\":\n      return isPColumnSpec(spec) && Boolean(spec.name.match(predicate.pattern));\n    case \"annotation\":\n      return (\n        isPColumnSpec(spec) &&\n        spec.annotations !== undefined &&\n        spec.annotations[predicate.annotation] === predicate.value\n      );\n    case \"annotation_pattern\":\n      return (\n        isPColumnSpec(spec) &&\n        spec.annotations !== undefined &&\n        spec.annotations[predicate.annotation] !== undefined &&\n        Boolean(spec.annotations[predicate.annotation].match(predicate.pattern))\n      );\n    case \"has_axes\":\n      return (\n        isPColumnSpec(spec) &&\n        predicate.axes.every((matcher) =>\n          spec.axesSpec.some(\n            (axisSpec) =>\n              (matcher.type === undefined || matcher.type === axisSpec.type) &&\n              (matcher.name === undefined || matcher.name === axisSpec.name) &&\n              (matcher.domain === undefined ||\n                Object.keys(matcher.domain).length === 0 ||\n                (axisSpec.domain !== undefined &&\n                  Object.entries(matcher.domain).every(\n                    ([domain, domainValue]) => axisSpec.domain![domain] === domainValue,\n                  ))),\n          ),\n        )\n      );\n    default:\n      assertNever(predicate);\n  }\n}\n"],"mappings":";;;AAoCA,SAAS,YAAY,GAAiB;AACpC,OAAM,IAAI,MAAM,wBAAwB,EAAE;;AAG5C,SAAgB,sBAAsB,WAA2B,MAA4B;AAC3F,SAAQ,UAAU,MAAlB;EACE,KAAK;AACH,QAAK,MAAM,YAAY,UAAU,SAC/B,KAAI,CAAC,sBAAsB,UAAU,KAAK,CAAE,QAAO;AACrD,UAAO;EACT,KAAK;AACH,QAAK,MAAM,YAAY,UAAU,SAC/B,KAAI,sBAAsB,UAAU,KAAK,CAAE,QAAO;AACpD,UAAO;EACT,KAAK,MACH,QAAO,CAAC,sBAAsB,UAAU,SAAS,KAAK;EACxD,KAAK,OACH,QAAOA,2BAAc,KAAK,IAAI,KAAK,SAAS,UAAU;EACxD,KAAK,eACH,QAAOA,2BAAc,KAAK,IAAI,QAAQ,KAAK,KAAK,MAAM,UAAU,QAAQ,CAAC;EAC3E,KAAK,aACH,QACEA,2BAAc,KAAK,IACnB,KAAK,gBAAgB,UACrB,KAAK,YAAY,UAAU,gBAAgB,UAAU;EAEzD,KAAK,qBACH,QACEA,2BAAc,KAAK,IACnB,KAAK,gBAAgB,UACrB,KAAK,YAAY,UAAU,gBAAgB,UAC3C,QAAQ,KAAK,YAAY,UAAU,YAAY,MAAM,UAAU,QAAQ,CAAC;EAE5E,KAAK,WACH,QACEA,2BAAc,KAAK,IACnB,UAAU,KAAK,OAAO,YACpB,KAAK,SAAS,MACX,cACE,QAAQ,SAAS,UAAa,QAAQ,SAAS,SAAS,UACxD,QAAQ,SAAS,UAAa,QAAQ,SAAS,SAAS,UACxD,QAAQ,WAAW,UAClB,OAAO,KAAK,QAAQ,OAAO,CAAC,WAAW,KACtC,SAAS,WAAW,UACnB,OAAO,QAAQ,QAAQ,OAAO,CAAC,OAC5B,CAAC,QAAQ,iBAAiB,SAAS,OAAQ,YAAY,YACzD,EACR,CACF;EAEL,QACE,aAAY,UAAU"}
+{"version":3,"file":"query.cjs","names":["isPColumnSpec"],"sources":["../../src/pool/query.ts"],"sourcesContent":["import type { AxisId } from \"../drivers\";\nimport type { PObjectSpec } from \"./spec\";\nimport { isPColumnSpec } from \"./spec\";\n\nexport type PSpecPredicate =\n  | {\n      type: \"and\" | \"or\";\n      operands: PSpecPredicate[];\n    }\n  | {\n      type: \"not\";\n      operand: PSpecPredicate;\n    }\n  | {\n      type: \"name\";\n      name: string;\n    }\n  | {\n      type: \"name_pattern\";\n      pattern: string;\n    }\n  | {\n      type: \"annotation\";\n      annotation: string;\n      value: string;\n    }\n  | {\n      type: \"annotation_pattern\";\n      annotation: string;\n      pattern: string;\n    }\n  | {\n      type: \"has_axes\";\n      axes: Partial<AxisId>[];\n    };\n\nfunction assertNever(x: never): never {\n  throw new Error(\"Unexpected object: \" + x); // This is ok, because this is a possible runtime error\n}\n\nexport function executePSpecPredicate(predicate: PSpecPredicate, spec: PObjectSpec): boolean {\n  switch (predicate.type) {\n    case \"and\":\n      for (const operator of predicate.operands)\n        if (!executePSpecPredicate(operator, spec)) return false;\n      return true;\n    case \"or\":\n      for (const operator of predicate.operands)\n        if (executePSpecPredicate(operator, spec)) return true;\n      return false;\n    case \"not\":\n      return !executePSpecPredicate(predicate.operand, spec);\n    case \"name\":\n      return isPColumnSpec(spec) && spec.name === predicate.name;\n    case \"name_pattern\":\n      return isPColumnSpec(spec) && Boolean(spec.name.match(predicate.pattern));\n    case \"annotation\":\n      return (\n        isPColumnSpec(spec) &&\n        spec.annotations !== undefined &&\n        spec.annotations[predicate.annotation] === predicate.value\n      );\n    case \"annotation_pattern\":\n      return (\n        isPColumnSpec(spec) &&\n        spec.annotations !== undefined &&\n        spec.annotations[predicate.annotation] !== undefined &&\n        Boolean(spec.annotations[predicate.annotation].match(predicate.pattern))\n      );\n    case \"has_axes\":\n      return (\n        isPColumnSpec(spec) &&\n        predicate.axes.every((matcher) =>\n          spec.axesSpec.some(\n            (axisSpec) =>\n              (matcher.type === undefined || matcher.type === axisSpec.type) &&\n              (matcher.name === undefined || matcher.name === axisSpec.name) &&\n              (matcher.domain === undefined ||\n                Object.keys(matcher.domain).length === 0 ||\n                (axisSpec.domain !== undefined &&\n                  Object.entries(matcher.domain).every(\n                    ([domain, domainValue]) => axisSpec.domain![domain] === domainValue,\n                  ))) &&\n              (matcher.contextDomain === undefined ||\n                Object.keys(matcher.contextDomain).length === 0 ||\n                (axisSpec.contextDomain !== undefined &&\n                  Object.entries(matcher.contextDomain).every(\n                    ([key, value]) => axisSpec.contextDomain![key] === value,\n                  ))),\n          ),\n        )\n      );\n    default:\n      assertNever(predicate);\n  }\n}\n"],"mappings":";;;AAoCA,SAAS,YAAY,GAAiB;AACpC,OAAM,IAAI,MAAM,wBAAwB,EAAE;;AAG5C,SAAgB,sBAAsB,WAA2B,MAA4B;AAC3F,SAAQ,UAAU,MAAlB;EACE,KAAK;AACH,QAAK,MAAM,YAAY,UAAU,SAC/B,KAAI,CAAC,sBAAsB,UAAU,KAAK,CAAE,QAAO;AACrD,UAAO;EACT,KAAK;AACH,QAAK,MAAM,YAAY,UAAU,SAC/B,KAAI,sBAAsB,UAAU,KAAK,CAAE,QAAO;AACpD,UAAO;EACT,KAAK,MACH,QAAO,CAAC,sBAAsB,UAAU,SAAS,KAAK;EACxD,KAAK,OACH,QAAOA,2BAAc,KAAK,IAAI,KAAK,SAAS,UAAU;EACxD,KAAK,eACH,QAAOA,2BAAc,KAAK,IAAI,QAAQ,KAAK,KAAK,MAAM,UAAU,QAAQ,CAAC;EAC3E,KAAK,aACH,QACEA,2BAAc,KAAK,IACnB,KAAK,gBAAgB,UACrB,KAAK,YAAY,UAAU,gBAAgB,UAAU;EAEzD,KAAK,qBACH,QACEA,2BAAc,KAAK,IACnB,KAAK,gBAAgB,UACrB,KAAK,YAAY,UAAU,gBAAgB,UAC3C,QAAQ,KAAK,YAAY,UAAU,YAAY,MAAM,UAAU,QAAQ,CAAC;EAE5E,KAAK,WACH,QACEA,2BAAc,KAAK,IACnB,UAAU,KAAK,OAAO,YACpB,KAAK,SAAS,MACX,cACE,QAAQ,SAAS,UAAa,QAAQ,SAAS,SAAS,UACxD,QAAQ,SAAS,UAAa,QAAQ,SAAS,SAAS,UACxD,QAAQ,WAAW,UAClB,OAAO,KAAK,QAAQ,OAAO,CAAC,WAAW,KACtC,SAAS,WAAW,UACnB,OAAO,QAAQ,QAAQ,OAAO,CAAC,OAC5B,CAAC,QAAQ,iBAAiB,SAAS,OAAQ,YAAY,YACzD,MACJ,QAAQ,kBAAkB,UACzB,OAAO,KAAK,QAAQ,cAAc,CAAC,WAAW,KAC7C,SAAS,kBAAkB,UAC1B,OAAO,QAAQ,QAAQ,cAAc,CAAC,OACnC,CAAC,KAAK,WAAW,SAAS,cAAe,SAAS,MACpD,EACR,CACF;EAEL,QACE,aAAY,UAAU"}

package/dist/pool/query.js

@@ -17,7 +17,7 @@ function executePSpecPredicate(predicate, spec) {
 		case "name_pattern": return isPColumnSpec(spec) && Boolean(spec.name.match(predicate.pattern));
 		case "annotation": return isPColumnSpec(spec) && spec.annotations !== void 0 && spec.annotations[predicate.annotation] === predicate.value;
 		case "annotation_pattern": return isPColumnSpec(spec) && spec.annotations !== void 0 && spec.annotations[predicate.annotation] !== void 0 && Boolean(spec.annotations[predicate.annotation].match(predicate.pattern));
-		case "has_axes": return isPColumnSpec(spec) && predicate.axes.every((matcher) => spec.axesSpec.some((axisSpec) => (matcher.type === void 0 || matcher.type === axisSpec.type) && (matcher.name === void 0 || matcher.name === axisSpec.name) && (matcher.domain === void 0 || Object.keys(matcher.domain).length === 0 || axisSpec.domain !== void 0 && Object.entries(matcher.domain).every(([domain, domainValue]) => axisSpec.domain[domain] === domainValue))));
+		case "has_axes": return isPColumnSpec(spec) && predicate.axes.every((matcher) => spec.axesSpec.some((axisSpec) => (matcher.type === void 0 || matcher.type === axisSpec.type) && (matcher.name === void 0 || matcher.name === axisSpec.name) && (matcher.domain === void 0 || Object.keys(matcher.domain).length === 0 || axisSpec.domain !== void 0 && Object.entries(matcher.domain).every(([domain, domainValue]) => axisSpec.domain[domain] === domainValue)) && (matcher.contextDomain === void 0 || Object.keys(matcher.contextDomain).length === 0 || axisSpec.contextDomain !== void 0 && Object.entries(matcher.contextDomain).every(([key, value]) => axisSpec.contextDomain[key] === value))));
 		default: assertNever(predicate);
 	}
 }