@milaboratories/pl-model-common 1.19.7 → 1.19.8

package/dist/drivers/pframe/spec/spec.js

@@ -0,0 +1,332 @@
+import { ensureError } from '../../../errors.js';
+import { canonicalizeJson } from '../../../json.js';
+import { z } from 'zod';
+
+const ValueType = {
+    Int: 'Int',
+    Long: 'Long',
+    Float: 'Float',
+    Double: 'Double',
+    String: 'String',
+    Bytes: 'Bytes',
+};
+function readMetadata(metadata, key) {
+    return metadata?.[key];
+}
+function readMetadataJsonOrThrow(metadata, metadataJson, key, methodNameInError = 'readMetadataJsonOrThrow') {
+    const json = readMetadata(metadata, key);
+    if (json === undefined)
+        return undefined;
+    const schema = metadataJson[key];
+    try {
+        const value = JSON.parse(json);
+        return schema.parse(value);
+    }
+    catch (error) {
+        throw new Error(`${methodNameInError} failed, `
+            + `key: ${String(key)}, `
+            + `value: ${json}, `
+            + `error: ${ensureError(error)}`);
+    }
+}
+function readMetadataJson(metadata, metadataJson, key) {
+    try {
+        return readMetadataJsonOrThrow(metadata, metadataJson, key);
+    }
+    catch {
+        return undefined; // treat invalid values as unset
+    }
+}
+/// Well-known domains
+const Domain = {
+    Alphabet: 'pl7.app/alphabet',
+    BlockId: 'pl7.app/blockId',
+};
+const DomainJson = {};
+/// Helper function for reading plain domain values
+function readDomain(spec, key) {
+    return readMetadata(spec?.domain, key);
+}
+/// Helper function for reading json-encoded domain values, throws on JSON parsing error
+function readDomainJsonOrThrow(spec, key) {
+    return readMetadataJsonOrThrow(spec?.domain, DomainJson, key, 'readDomainJsonOrThrow');
+}
+/// Helper function for reading json-encoded domain values, returns undefined on JSON parsing error
+function readDomainJson(spec, key) {
+    return readMetadataJson(spec?.domain, DomainJson, key);
+}
+/// Well-known annotations
+const Annotation = {
+    Alphabet: 'pl7.app/alphabet',
+    DiscreteValues: 'pl7.app/discreteValues',
+    Format: 'pl7.app/format',
+    Graph: {
+        IsVirtual: 'pl7.app/graph/isVirtual',
+    },
+    HideDataFromUi: 'pl7.app/hideDataFromUi',
+    IsLinkerColumn: 'pl7.app/isLinkerColumn',
+    Label: 'pl7.app/label',
+    Max: 'pl7.app/max',
+    Min: 'pl7.app/min',
+    Parents: 'pl7.app/parents',
+    Sequence: {
+        Annotation: {
+            Mapping: 'pl7.app/sequence/annotation/mapping',
+        },
+        IsAnnotation: 'pl7.app/sequence/isAnnotation',
+    },
+    Table: {
+        FontFamily: 'pl7.app/table/fontFamily',
+        OrderPriority: 'pl7.app/table/orderPriority',
+        Visibility: 'pl7.app/table/visibility',
+    },
+    Trace: 'pl7.app/trace',
+};
+const AxisSpec = z.object({
+    type: z.nativeEnum(ValueType),
+    name: z.string(),
+    domain: z.record(z.string(), z.string()).optional(),
+    annotations: z.record(z.string(), z.string()).optional(),
+    parentAxes: z.array(z.number()).optional(),
+}).passthrough();
+const AnnotationJson = {
+    [Annotation.DiscreteValues]: z.array(z.string()).or(z.array(z.number())),
+    [Annotation.Graph.IsVirtual]: z.boolean(),
+    [Annotation.HideDataFromUi]: z.boolean(),
+    [Annotation.IsLinkerColumn]: z.boolean(),
+    [Annotation.Max]: z.number(),
+    [Annotation.Min]: z.number(),
+    [Annotation.Parents]: z.array(AxisSpec),
+    [Annotation.Sequence.Annotation.Mapping]: z.record(z.string(), z.string()),
+    [Annotation.Sequence.IsAnnotation]: z.boolean(),
+    [Annotation.Table.OrderPriority]: z.number(),
+    [Annotation.Trace]: z.record(z.string(), z.unknown()),
+};
+/// Helper function for reading plain annotation values
+function readAnnotation(spec, key) {
+    return readMetadata(spec?.annotations, key);
+}
+/// Helper function for reading json-encoded annotation values, throws on JSON parsing error
+function readAnnotationJsonOrThrow(spec, key) {
+    return readMetadataJsonOrThrow(spec?.annotations, AnnotationJson, key, 'readAnnotationJsonOrThrow');
+}
+/// Helper function for reading json-encoded annotation values, returns undefined on JSON parsing error
+function readAnnotationJson(spec, key) {
+    return readMetadataJson(spec?.annotations, AnnotationJson, key);
+}
+function makeAxisTree(axis) {
+    return { axis, children: [] };
+}
+/** Build tree by axis parents annotations */
+function getAxesTree(rootAxis) {
+    const root = makeAxisTree(rootAxis);
+    let nodesQ = [root];
+    while (nodesQ.length) {
+        const nextNodes = [];
+        for (const node of nodesQ) {
+            node.children = node.axis.parentAxesSpec.map(makeAxisTree);
+            nextNodes.push(...node.children);
+        }
+        nodesQ = nextNodes;
+    }
+    return root;
+}
+/** Get set of canonicalized axisIds from axisTree */
+function getSetFromAxisTree(tree) {
+    const set = new Set([canonicalizeJson(getAxisId(tree.axis))]);
+    let nodesQ = [tree];
+    while (nodesQ.length) {
+        const nextNodes = [];
+        for (const node of nodesQ) {
+            for (const parent of node.children) {
+                set.add(canonicalizeJson(getAxisId(parent.axis)));
+                nextNodes.push(parent);
+            }
+        }
+        nodesQ = nextNodes;
+    }
+    return set;
+}
+/** Get array of axisSpecs from axisTree */
+function getArrayFromAxisTree(tree) {
+    const res = [tree.axis];
+    let nodesQ = [tree];
+    while (nodesQ.length) {
+        const nextNodes = [];
+        for (const node of nodesQ) {
+            for (const parent of node.children) {
+                res.push(parent.axis);
+                nextNodes.push(parent);
+            }
+        }
+        nodesQ = nextNodes;
+    }
+    return res;
+}
+function canonicalizeAxisWithParents(axis) {
+    return canonicalizeJson(getArrayFromAxisTree(getAxesTree(axis)).map(getAxisId));
+}
+function normalizingAxesComparator(axis1, axis2) {
+    if (axis1.name !== axis2.name) {
+        return axis1.name < axis2.name ? 1 : -1;
+    }
+    if (axis1.type !== axis2.type) {
+        return axis1.type < axis2.type ? 1 : -1;
+    }
+    const domain1 = canonicalizeJson(axis1.domain ?? {});
+    const domain2 = canonicalizeJson(axis2.domain ?? {});
+    if (domain1 !== domain2) {
+        return domain1 < domain2 ? 1 : -1;
+    }
+    const parents1 = canonicalizeAxisWithParents(axis1);
+    const parents2 = canonicalizeAxisWithParents(axis2);
+    if (parents1 !== parents2) {
+        return parents1 < parents2 ? 1 : -1;
+    }
+    const annotation1 = canonicalizeJson(axis1.annotations ?? {});
+    const annotation2 = canonicalizeJson(axis2.annotations ?? {});
+    if (annotation1 !== annotation2) {
+        return annotation1 < annotation2 ? 1 : -1;
+    }
+    return 0;
+}
+function parseParentsFromAnnotations(axis) {
+    const parentsList = readAnnotationJson(axis, Annotation.Parents);
+    if (parentsList === undefined) {
+        return [];
+    }
+    return parentsList;
+}
+function sortParentsDeep(axisSpec) {
+    axisSpec.parentAxesSpec.forEach(sortParentsDeep);
+    axisSpec.parentAxesSpec.sort(normalizingAxesComparator);
+}
+function hasCycleOfParents(axisSpec) {
+    const root = makeAxisTree(axisSpec);
+    let nodesQ = [root];
+    const ancestors = new Set(canonicalizeJson(getAxisId(axisSpec)));
+    while (nodesQ.length) {
+        const nextNodes = [];
+        const levelIds = new Set();
+        for (const node of nodesQ) {
+            node.children = node.axis.parentAxesSpec.map(makeAxisTree);
+            for (const child of node.children) {
+                const childId = canonicalizeJson(getAxisId(child.axis));
+                if (!levelIds.has(childId)) {
+                    nextNodes.push(child);
+                    levelIds.add(childId);
+                    if (ancestors.has(childId)) {
+                        return true;
+                    }
+                    ancestors.add(childId);
+                }
+            }
+        }
+        nodesQ = nextNodes;
+    }
+    return false;
+}
+/** Create list of normalized axisSpec (parents are in array of specs, not indexes) */
+function getNormalizedAxesList(axes) {
+    if (!axes.length) {
+        return [];
+    }
+    const modifiedAxes = axes.map((axis) => {
+        const { parentAxes: _, ...copiedRest } = axis;
+        return { ...copiedRest, annotations: { ...copiedRest.annotations }, parentAxesSpec: [] };
+    });
+    axes.forEach((axis, idx) => {
+        const modifiedAxis = modifiedAxes[idx];
+        if (axis.parentAxes) { // if we have parents by indexes then take from the list
+            modifiedAxis.parentAxesSpec = axis.parentAxes.map((idx) => modifiedAxes[idx]);
+        }
+        else { // else try to parse from annotation and normalize recursively
+            modifiedAxis.parentAxesSpec = getNormalizedAxesList(parseParentsFromAnnotations(axis));
+            delete modifiedAxis.annotations?.[Annotation.Parents];
+        }
+    });
+    if (modifiedAxes.some(hasCycleOfParents)) { // Axes list is broken
+        modifiedAxes.forEach((axis) => {
+            axis.parentAxesSpec = [];
+        });
+    }
+    else {
+        modifiedAxes.forEach((axis) => {
+            sortParentsDeep(axis);
+        });
+    }
+    return modifiedAxes;
+}
+/** Create list of regular axisSpec from normalized (parents are indexes, inside of current axes list) */
+function getDenormalizedAxesList(axesSpec) {
+    const idsList = axesSpec.map((axisSpec) => canonicalizeJson(getAxisId(axisSpec)));
+    return axesSpec.map((axisSpec) => {
+        const parentsIds = axisSpec.parentAxesSpec.map((axisSpec) => canonicalizeJson(getAxisId(axisSpec)));
+        const parentIdxs = parentsIds.map((id) => idsList.indexOf(id));
+        const { parentAxesSpec: _, ...copiedRest } = axisSpec;
+        if (parentIdxs.length) {
+            return { ...copiedRest, parentAxes: parentIdxs };
+        }
+        return copiedRest;
+    });
+}
+/// Well-known column names
+const PColumnName = {
+    Label: 'pl7.app/label',
+    Table: {
+        RowSelection: 'pl7.app/table/row-selection',
+    },
+};
+function getPColumnSpecId(spec) {
+    return {
+        kind: spec.kind,
+        valueType: spec.valueType,
+        name: spec.name,
+        domain: spec.domain,
+        parentAxes: spec.parentAxes,
+        axesId: getAxesId(spec.axesSpec),
+    };
+}
+/** Get column id and spec from a column */
+function getColumnIdAndSpec(column) {
+    return {
+        columnId: column.id,
+        spec: column.spec,
+    };
+}
+/** Extracts axis ids from axis spec */
+function getAxisId(spec) {
+    const { type, name, domain } = spec;
+    const result = { type, name };
+    if (domain && Object.entries(domain).length > 0) {
+        Object.assign(result, { domain });
+    }
+    return result;
+}
+/** Extracts axes ids from axes spec array from column spec */
+function getAxesId(spec) {
+    return spec.map(getAxisId);
+}
+/** Canonicalizes axis id */
+function canonicalizeAxisId(id) {
+    return canonicalizeJson(getAxisId(id));
+}
+/** Returns true if all domains from query are found in target */
+function matchDomain(query, target) {
+    if (query === undefined)
+        return target === undefined;
+    if (target === undefined)
+        return true;
+    for (const k in target) {
+        if (query[k] !== target[k])
+            return false;
+    }
+    return true;
+}
+/** Returns whether "match" axis id is compatible with the "query" */
+function matchAxisId(query, target) {
+    return query.name === target.name && matchDomain(query.domain, target.domain);
+}
+
+export { Annotation, AnnotationJson, AxisSpec, Domain, DomainJson, PColumnName, ValueType, canonicalizeAxisId, canonicalizeAxisWithParents, getArrayFromAxisTree, getAxesId, getAxesTree, getAxisId, getColumnIdAndSpec, getDenormalizedAxesList, getNormalizedAxesList, getPColumnSpecId, getSetFromAxisTree, matchAxisId, readAnnotation, readAnnotationJson, readAnnotationJsonOrThrow, readDomain, readDomainJson, readDomainJsonOrThrow, readMetadata, readMetadataJson, readMetadataJsonOrThrow };
+//# sourceMappingURL=spec.js.map

package/dist/drivers/pframe/spec/spec.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"spec.js","sources":["../../../../src/drivers/pframe/spec/spec.ts"],"sourcesContent":["import { ensureError } from '../../../errors';\nimport {\n  canonicalizeJson,\n  type CanonicalizedJson,\n  type StringifiedJson,\n} from '../../../json';\nimport type {\n  PObject,\n  PObjectId,\n  PObjectSpec,\n} from '../../../pool';\nimport { z } from 'zod';\n\ntype Expect<T extends true> = T;\ntype Equal<X, Y> =\n  (<T>() => T extends X ? 1 : 2) extends (<T>() => T extends Y ? 1 : 2) ? true : false;\n\nexport const ValueType = {\n  Int: 'Int',\n  Long: 'Long',\n  Float: 'Float',\n  Double: 'Double',\n  String: 'String',\n  Bytes: 'Bytes',\n} as const;\n\n/** PFrame columns and axes within them may store one of these types. */\nexport type ValueType = (typeof ValueType)[keyof typeof ValueType];\n\nexport type Metadata = Record<string, string>;\n\nexport function readMetadata<U extends Metadata, T extends keyof U = keyof U>(\n  metadata: Metadata | undefined,\n  key: T,\n): U[T] | undefined {\n  return (metadata as U | undefined)?.[key];\n}\n\ntype MetadataJsonImpl<M> = {\n  [P in keyof M as (M[P] extends StringifiedJson ? P : never)]: M[P] extends StringifiedJson<infer U> ? z.ZodType<U> : never;\n};\nexport type MetadataJson<M> = MetadataJsonImpl<Required<M>>;\n\nexport function readMetadataJsonOrThrow<M extends Metadata, T extends keyof MetadataJson<M>>(\n  metadata: Metadata | undefined,\n  metadataJson: MetadataJson<M>,\n  key: T,\n  methodNameInError: string = 'readMetadataJsonOrThrow',\n): z.infer<MetadataJson<M>[T]> | undefined {\n  const json = readMetadata<M, T>(metadata, key);\n  if (json === undefined) return undefined;\n\n  const schema = metadataJson[key];\n  try {\n    const value = JSON.parse(json);\n    return schema.parse(value);\n  } catch (error: unknown) {\n    throw new Error(\n      `${methodNameInError} failed, `\n      + `key: ${String(key)}, `\n      + `value: ${json}, `\n      + `error: ${ensureError(error)}`,\n    );\n  }\n}\n\nexport function readMetadataJson<M extends Metadata, T extends keyof MetadataJson<M>>(\n  metadata: Metadata | undefined,\n  metadataJson: MetadataJson<M>,\n  key: T,\n): z.infer<MetadataJson<M>[T]> | undefined {\n  try {\n    return readMetadataJsonOrThrow(metadata, metadataJson, key);\n  } catch {\n    return undefined; // treat invalid values as unset\n  }\n}\n\n/// Well-known domains\nexport const Domain = {\n  Alphabet: 'pl7.app/alphabet',\n  BlockId: 'pl7.app/blockId',\n} as const;\n\nexport type Domain = Metadata & Partial<{\n  [Domain.Alphabet]: 'nucleotide' | 'aminoacid' | string;\n  [Domain.BlockId]: string;\n}>;\n\nexport type DomainJson = MetadataJson<Domain>;\nexport const DomainJson: DomainJson = {};\n\n/// Helper function for reading plain domain values\nexport function readDomain<T extends keyof Domain>(\n  spec: { domain?: Metadata | undefined } | undefined,\n  key: T,\n): Domain[T] | undefined {\n  return readMetadata<Domain, T>(spec?.domain, key);\n}\n\n/// Helper function for reading json-encoded domain values, throws on JSON parsing error\nexport function readDomainJsonOrThrow<T extends keyof DomainJson>(\n  spec: { domain?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<DomainJson[T]> | undefined {\n  return readMetadataJsonOrThrow<Domain, T>(spec?.domain, DomainJson, key, 'readDomainJsonOrThrow');\n}\n\n/// Helper function for reading json-encoded domain values, returns undefined on JSON parsing error\nexport function readDomainJson<T extends keyof DomainJson>(\n  spec: { domain?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<DomainJson[T]> | undefined {\n  return readMetadataJson<Domain, T>(spec?.domain, DomainJson, key);\n}\n\n/// Well-known annotations\nexport const Annotation = {\n  Alphabet: 'pl7.app/alphabet',\n  DiscreteValues: 'pl7.app/discreteValues',\n  Format: 'pl7.app/format',\n  Graph: {\n    IsVirtual: 'pl7.app/graph/isVirtual',\n  },\n  HideDataFromUi: 'pl7.app/hideDataFromUi',\n  IsLinkerColumn: 'pl7.app/isLinkerColumn',\n  Label: 'pl7.app/label',\n  Max: 'pl7.app/max',\n  Min: 'pl7.app/min',\n  Parents: 'pl7.app/parents',\n  Sequence: {\n    Annotation: {\n      Mapping: 'pl7.app/sequence/annotation/mapping',\n    },\n    IsAnnotation: 'pl7.app/sequence/isAnnotation',\n  },\n  Table: {\n    FontFamily: 'pl7.app/table/fontFamily',\n    OrderPriority: 'pl7.app/table/orderPriority',\n    Visibility: 'pl7.app/table/visibility',\n  },\n  Trace: 'pl7.app/trace',\n} as const;\n\nexport type Annotation = Metadata & Partial<{\n  [Annotation.Alphabet]: 'nucleotide' | 'aminoacid' | string;\n  [Annotation.DiscreteValues]: StringifiedJson<number[]> | StringifiedJson<string[]>;\n  [Annotation.Format]: string;\n  [Annotation.Graph.IsVirtual]: StringifiedJson<boolean>;\n  [Annotation.HideDataFromUi]: StringifiedJson<boolean>;\n  [Annotation.IsLinkerColumn]: StringifiedJson<boolean>;\n  [Annotation.Label]: string;\n  [Annotation.Max]: StringifiedJson<number>;\n  [Annotation.Min]: StringifiedJson<number>;\n  [Annotation.Parents]: StringifiedJson<AxisSpec[]>;\n  [Annotation.Sequence.Annotation.Mapping]: StringifiedJson<Record<string, string>>;\n  [Annotation.Sequence.IsAnnotation]: StringifiedJson<boolean>;\n  [Annotation.Table.FontFamily]: string;\n  [Annotation.Table.OrderPriority]: StringifiedJson<number>;\n  [Annotation.Table.Visibility]: 'hidden' | 'optional' | string;\n  [Annotation.Trace]: StringifiedJson<Record<string, unknown>>;\n}>;\n\nexport const AxisSpec = z.object({\n  type: z.nativeEnum(ValueType),\n  name: z.string(),\n  domain: z.record(z.string(), z.string()).optional(),\n  annotations: z.record(z.string(), z.string()).optional(),\n  parentAxes: z.array(z.number()).optional(),\n}).passthrough();\ntype _test = Expect<Equal<\n  Readonly<z.infer<typeof AxisSpec>>,\n  Readonly<AxisSpec & Record<string, unknown>>\n>>;\n\nexport type AnnotationJson = MetadataJson<Annotation>;\nexport const AnnotationJson: AnnotationJson = {\n  [Annotation.DiscreteValues]: z.array(z.string()).or(z.array(z.number())),\n  [Annotation.Graph.IsVirtual]: z.boolean(),\n  [Annotation.HideDataFromUi]: z.boolean(),\n  [Annotation.IsLinkerColumn]: z.boolean(),\n  [Annotation.Max]: z.number(),\n  [Annotation.Min]: z.number(),\n  [Annotation.Parents]: z.array(AxisSpec),\n  [Annotation.Sequence.Annotation.Mapping]: z.record(z.string(), z.string()),\n  [Annotation.Sequence.IsAnnotation]: z.boolean(),\n  [Annotation.Table.OrderPriority]: z.number(),\n  [Annotation.Trace]: z.record(z.string(), z.unknown()),\n};\n\n/// Helper function for reading plain annotation values\nexport function readAnnotation<T extends keyof Annotation>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): Annotation[T] | undefined {\n  return readMetadata<Annotation, T>(spec?.annotations, key);\n}\n\n/// Helper function for reading json-encoded annotation values, throws on JSON parsing error\nexport function readAnnotationJsonOrThrow<T extends keyof AnnotationJson>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<AnnotationJson[T]> | undefined {\n  return readMetadataJsonOrThrow<Annotation, T>(spec?.annotations, AnnotationJson, key, 'readAnnotationJsonOrThrow');\n}\n\n/// Helper function for reading json-encoded annotation values, returns undefined on JSON parsing error\nexport function readAnnotationJson<T extends keyof AnnotationJson>(\n  spec: { annotations?: Metadata | undefined } | undefined,\n  key: T,\n): z.infer<AnnotationJson[T]> | undefined {\n  return readMetadataJson<Annotation, T>(spec?.annotations, AnnotationJson, key);\n}\n\n/**\n * Specification of an individual axis.\n *\n * Each axis is a part of a composite key that addresses data inside the PColumn.\n *\n * Each record inside a PColumn is addressed by a unique tuple of values set for\n * all the axes specified in the column spec.\n * */\nexport interface AxisSpec {\n  /** Type of the axis value. Should not use non-key types like float or double. */\n  readonly type: ValueType;\n\n  /** Name of the axis */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** Any additional information attached to the axis that does not affect its\n   * identifier */\n  readonly annotations?: Record<string, string>;\n\n  /**\n   * Parent axes provide contextual grouping for the axis in question, establishing\n   * a hierarchy where the current axis is dependent on one or more axes for its\n   * full definition and meaning. For instance, in a data structure where each\n   * \"container\" axis may contain multiple \"item\" axes, the `item` axis would\n   * list the index of the `container` axis in this field to denote its dependency.\n   *\n   * This means that the identity or significance of the `item` axis is only\n   * interpretable when combined with its parent `container` axis. An `item` axis\n   * index by itself may be non-unique and only gains uniqueness within the context\n   * of its parent `container`. Therefore, the `parentAxes` field is essential for\n   * mapping these relationships and ensuring data coherence across nested or\n   * multi-level data models.\n   *\n   * A list of zero-based indices of parent axes in the overall axes specification\n   * from the column spec. Each index corresponds to the position of a parent axis\n   * in the list that defines the structure of the data model.\n   */\n  readonly parentAxes?: number[];\n}\n\n/** Parents are specs, not indexes; normalized axis can be used considering its parents independently from column */\nexport interface AxisSpecNormalized extends Omit<AxisSpec, 'parentAxes'> {\n  parentAxesSpec: AxisSpecNormalized[];\n}\n\n/** Tree: axis is a root, its parents are children */\nexport type AxisTree = {\n  axis: AxisSpecNormalized;\n  children: AxisTree[]; // parents\n};\n\nfunction makeAxisTree(axis: AxisSpecNormalized): AxisTree {\n  return { axis, children: [] };\n}\n\n/** Build tree by axis parents annotations */\nexport function getAxesTree(rootAxis: AxisSpecNormalized): AxisTree {\n  const root = makeAxisTree(rootAxis);\n  let nodesQ = [root];\n  while (nodesQ.length) {\n    const nextNodes: AxisTree[] = [];\n    for (const node of nodesQ) {\n      node.children = node.axis.parentAxesSpec.map(makeAxisTree);\n      nextNodes.push(...node.children);\n    }\n    nodesQ = nextNodes;\n  }\n  return root;\n}\n\n/** Get set of canonicalized axisIds from axisTree */\nexport function getSetFromAxisTree(tree: AxisTree): Set<CanonicalizedJson<AxisId>> {\n  const set = new Set([canonicalizeJson(getAxisId(tree.axis))]);\n  let nodesQ = [tree];\n  while (nodesQ.length) {\n    const nextNodes = [];\n    for (const node of nodesQ) {\n      for (const parent of node.children) {\n        set.add(canonicalizeJson(getAxisId(parent.axis)));\n        nextNodes.push(parent);\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return set;\n}\n\n/** Get array of axisSpecs from axisTree */\nexport function getArrayFromAxisTree(tree: AxisTree): AxisSpecNormalized[] {\n  const res = [tree.axis];\n  let nodesQ = [tree];\n  while (nodesQ.length) {\n    const nextNodes = [];\n    for (const node of nodesQ) {\n      for (const parent of node.children) {\n        res.push(parent.axis);\n        nextNodes.push(parent);\n      }\n    }\n    nodesQ = nextNodes;\n  }\n  return res;\n}\n\nexport function canonicalizeAxisWithParents(axis: AxisSpecNormalized) {\n  return canonicalizeJson(getArrayFromAxisTree(getAxesTree(axis)).map(getAxisId));\n}\n\nfunction normalizingAxesComparator(axis1: AxisSpecNormalized, axis2: AxisSpecNormalized): 1 | -1 | 0 {\n  if (axis1.name !== axis2.name) {\n    return axis1.name < axis2.name ? 1 : -1;\n  }\n  if (axis1.type !== axis2.type) {\n    return axis1.type < axis2.type ? 1 : -1;\n  }\n  const domain1 = canonicalizeJson(axis1.domain ?? {});\n  const domain2 = canonicalizeJson(axis2.domain ?? {});\n  if (domain1 !== domain2) {\n    return domain1 < domain2 ? 1 : -1;\n  }\n\n  const parents1 = canonicalizeAxisWithParents(axis1);\n  const parents2 = canonicalizeAxisWithParents(axis2);\n\n  if (parents1 !== parents2) {\n    return parents1 < parents2 ? 1 : -1;\n  }\n\n  const annotation1 = canonicalizeJson(axis1.annotations ?? {});\n  const annotation2 = canonicalizeJson(axis2.annotations ?? {});\n  if (annotation1 !== annotation2) {\n    return annotation1 < annotation2 ? 1 : -1;\n  }\n  return 0;\n}\n\nfunction parseParentsFromAnnotations(axis: AxisSpec) {\n  const parentsList = readAnnotationJson(axis, Annotation.Parents);\n  if (parentsList === undefined) {\n    return [];\n  }\n  return parentsList;\n}\n\nfunction sortParentsDeep(axisSpec: AxisSpecNormalized) {\n  axisSpec.parentAxesSpec.forEach(sortParentsDeep);\n  axisSpec.parentAxesSpec.sort(normalizingAxesComparator);\n}\n\nfunction hasCycleOfParents(axisSpec: AxisSpecNormalized) {\n  const root = makeAxisTree(axisSpec);\n  let nodesQ = [root];\n  const ancestors = new Set(canonicalizeJson(getAxisId(axisSpec)));\n  while (nodesQ.length) {\n    const nextNodes: AxisTree[] = [];\n    const levelIds = new Set<CanonicalizedJson<AxisId>>();\n    for (const node of nodesQ) {\n      node.children = 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parentsIds = axisSpec.parentAxesSpec.map((axisSpec) => canonicalizeJson(getAxisId(axisSpec)));\n    const parentIdxs = parentsIds.map((id) => idsList.indexOf(id));\n    const { parentAxesSpec: _, ...copiedRest } = axisSpec;\n    if (parentIdxs.length) {\n      return { ...copiedRest, parentAxes: parentIdxs } as AxisSpec;\n    }\n    return copiedRest;\n  });\n}\n\n/** Common type representing spec for all the axes in a column */\nexport type AxesSpec = AxisSpec[];\n\n/// Well-known column names\nexport const PColumnName = {\n  Label: 'pl7.app/label',\n  Table: {\n    RowSelection: 'pl7.app/table/row-selection',\n  },\n} as const;\n\n/**\n * Full column specification including all axes specs and specs of the column\n * itself.\n *\n * A PColumn in its essence represents a mapping from a fixed size, explicitly\n * typed tuple to an explicitly typed value.\n *\n * (axis1Value1, axis2Value1, ...) -> columnValue\n *\n * Each element in tuple correspond to the axis having the same index in 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by multiple keys. This is in contrast to other PColumn variants that can store more complex\n * values like files or other abstract data types. Data columns are optimized for storing and processing\n * basic tabular data.\n */\nexport interface PDataColumnSpec extends PUniversalColumnSpec {\n  /** Type of column values */\n  readonly valueType: ValueType;\n}\n\n// @todo: change this to PUniversalColumnSpec\nexport type PColumnSpec = PDataColumnSpec;\n\n/** Unique PColumnSpec identifier */\nexport type PColumnSpecId = {\n  /** Defines specific type of BObject, the most generic type of unit of\n   * information in Platforma Project. */\n  readonly kind: 'PColumn';\n\n  /** Type of column values */\n  readonly valueType: ValueType;\n\n  /** Column name */\n  readonly name: string;\n\n  /** Adds auxiliary information to the axis name, type and parents to form a\n   * unique identifier */\n  readonly domain?: Record<string, string>;\n\n  /** A list of zero-based indices of parent axes from the {@link axesSpec} array. */\n  readonly parentAxes?: number[];\n\n  /** Axes id */\n  readonly axesId: AxesId;\n};\n\nexport function getPColumnSpecId(spec: PColumnSpec): PColumnSpecId {\n  return {\n    kind: spec.kind,\n    valueType: spec.valueType,\n    name: spec.name,\n    domain: spec.domain,\n    parentAxes: spec.parentAxes,\n    axesId: getAxesId(spec.axesSpec),\n  };\n}\n\nexport interface PColumn<Data> extends PObject<Data> {\n  /** PColumn spec, allowing it to be found among other PObjects */\n  readonly spec: PColumnSpec;\n}\n\n/** Columns in a PFrame also have internal identifier, this object represents\n * combination of specs and such id */\nexport interface PColumnIdAndSpec {\n  /** Internal column id within the PFrame */\n  readonly columnId: PObjectId;\n\n  /** Column spec */\n  readonly spec: PColumnSpec;\n}\n\n/** Get column id and spec from a column */\nexport function getColumnIdAndSpec<Data>(column: PColumn<Data>): PColumnIdAndSpec {\n  return {\n    columnId: column.id,\n    spec: column.spec,\n  };\n}\n\n/** Information returned by {@link PFrame.listColumns} method */\nexport interface PColumnInfo extends PColumnIdAndSpec {\n  /** True if data was associated with this PColumn */\n  readonly hasData: boolean;\n}\n\nexport interface AxisId {\n  /** Type of the axis or column value. 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package/dist/drivers/pframe/table.d.ts

@@ -26,4 +26,3 @@ export interface PTable {
      * */
     getData(columnIndices: number[], range?: TableRange): Promise<PTableVector[]>;
 }
-//# sourceMappingURL=table.d.ts.map

package/dist/drivers/pframe/table_calculate.cjs

@@ -0,0 +1,43 @@
+'use strict';
+
+var util = require('../../util.cjs');
+
+function mapPTableDef(def, cb) {
+    return { ...def, src: mapJoinEntry(def.src, cb) };
+}
+function mapJoinEntry(entry, cb) {
+    switch (entry.type) {
+        case 'column':
+            return {
+                type: 'column',
+                column: cb(entry.column),
+            };
+        case 'slicedColumn':
+            return {
+                type: 'slicedColumn',
+                column: cb(entry.column),
+                newId: entry.newId,
+                axisFilters: entry.axisFilters,
+            };
+        case 'inlineColumn':
+            return entry;
+        case 'inner':
+        case 'full':
+            return {
+                type: entry.type,
+                entries: entry.entries.map((col) => mapJoinEntry(col, cb)),
+            };
+        case 'outer':
+            return {
+                type: 'outer',
+                primary: mapJoinEntry(entry.primary, cb),
+                secondary: entry.secondary.map((col) => mapJoinEntry(col, cb)),
+            };
+        default:
+            util.assertNever(entry);
+    }
+}
+
+exports.mapJoinEntry = mapJoinEntry;
+exports.mapPTableDef = mapPTableDef;
+//# sourceMappingURL=table_calculate.cjs.map

package/dist/drivers/pframe/table_calculate.cjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"table_calculate.cjs","sources":["../../../src/drivers/pframe/table_calculate.ts"],"sourcesContent":["import type { PTableColumnId, PTableColumnSpec } from './table_common';\nimport type { PTableVector } from './data_types';\nimport type { PObjectId } from '../../pool';\nimport { assertNever } from '../../util';\nimport type { PColumn } from './spec/spec';\nimport type { PColumnValues } from './data_info';\n\n/** Defines a terminal column node in the join request tree */\nexport interface ColumnJoinEntry<Col> {\n  /** Node type discriminator */\n  readonly type: 'column';\n\n  /** Local column */\n  readonly column: Col;\n}\n\n/**\n * Axis filter slicing target axis from column axes.\n * If the axis has parents or is a parent, slicing cannot be applied (an error will be thrown).\n * */\nexport interface ConstantAxisFilter {\n  /** Filter type discriminator */\n  readonly type: 'constant';\n\n  /** Index of axis to slice (zero-based) */\n  readonly axisIndex: number;\n\n  /** Equality filter reference value, see {@link SingleValueEqualPredicate} */\n  readonly constant: string | number;\n}\n\n/** Defines a terminal column node in the join request tree */\nexport interface SlicedColumnJoinEntry<Col> {\n  /** Node type discriminator */\n  readonly type: 'slicedColumn';\n\n  /** Local column */\n  readonly column: Col;\n\n  /** New column id */\n  readonly newId: PObjectId;\n\n  /** Non-empty list of axis filters */\n  readonly axisFilters: ConstantAxisFilter[];\n}\n\n/** Defines a terminal column node in the join request tree */\nexport interface InlineColumnJoinEntry {\n  /** Node type discriminator */\n  readonly type: 'inlineColumn';\n\n  /** Column definition */\n  readonly column: PColumn<PColumnValues>;\n}\n\n/**\n * Defines a join request tree node that will output only records present in\n * all child nodes ({@link entries}).\n * */\nexport interface InnerJoin<Col> {\n  /** Node type discriminator */\n  readonly type: 'inner';\n\n  /** Child nodes to be inner joined */\n  readonly entries: JoinEntry<Col>[];\n}\n\n/**\n * Defines a join request tree node that will output all records present at\n * least in one of the child nodes ({@link entries}), values for those PColumns\n * that lacks corresponding combinations of axis values will be marked as absent,\n * see {@link PTableVector.absent}.\n * */\nexport interface FullJoin<Col> {\n  /** Node type discriminator */\n  readonly type: 'full';\n\n  /** Child nodes to be fully outer joined */\n  readonly entries: JoinEntry<Col>[];\n}\n\n/**\n * Defines a join request tree node that will output all records present in\n * {@link primary} child node, and records from the {@link secondary} nodes will\n * be added to the output only if present, values for those PColumns from the\n * {@link secondary} list, that lacks corresponding combinations of axis values\n * will be marked as absent, see {@link PTableVector.absent}.\n *\n * This node can be thought as a chain of SQL LEFT JOIN operations starting from\n * the {@link primary} node and adding {@link secondary} nodes one by one.\n * */\nexport interface OuterJoin<Col> {\n  /** Node type discriminator */\n  readonly type: 'outer';\n\n  /** Primes the join operation. Left part of LEFT JOIN. */\n  readonly primary: JoinEntry<Col>;\n\n  /** Driven nodes, giving their values only if primary node have corresponding\n   * nodes. Right parts of LEFT JOIN chain. */\n  readonly secondary: JoinEntry<Col>[];\n}\n\n/**\n * Base type of all join request tree nodes. Join request tree allows to combine\n * information from multiple PColumns into a PTable. Correlation between records\n * is performed by looking for records with the same values in common axis between\n * the PColumns. Common axis are those axis which have equal {@link AxisId} derived\n * from the columns axes spec.\n * */\nexport type JoinEntry<Col> =\n  | ColumnJoinEntry<Col>\n  | SlicedColumnJoinEntry<Col>\n  | InlineColumnJoinEntry\n  | InnerJoin<Col>\n  | FullJoin<Col>\n  | OuterJoin<Col>;\n\n/** Container representing whole data stored in specific PTable column. */\nexport interface FullPTableColumnData {\n  /** Unified spec */\n  readonly spec: PTableColumnSpec;\n\n  /** Data */\n  readonly data: PTableVector;\n}\n\nexport interface SingleValueIsNAPredicate {\n  /** Comparison operator */\n  readonly operator: 'IsNA';\n}\n\nexport interface SingleValueEqualPredicate {\n  /** Comparison operator */\n  readonly operator: 'Equal';\n\n  /** Reference value, NA values will not match */\n  readonly reference: string | number;\n}\n\nexport interface SingleValueInSetPredicate {\n  /** Comparison operator */\n  readonly operator: 'InSet';\n\n  /** Reference values, NA values will not match */\n  readonly references: (string | number)[];\n}\n\nexport interface SingleValueIEqualPredicate {\n  /** Comparison operator (case insensitive) */\n  readonly operator: 'IEqual';\n\n  /** Reference value, NA values will not match */\n  readonly reference: string;\n}\n\nexport interface SingleValueLessPredicate {\n  /** Comparison operator */\n  readonly operator: 'Less';\n\n  /** Reference value, NA values will not match */\n  readonly reference: string | number;\n}\n\nexport interface SingleValueLessOrEqualPredicate {\n  /** Comparison operator */\n  readonly operator: 'LessOrEqual';\n\n  /** Reference value, NA values will not match */\n  readonly reference: string | number;\n}\n\nexport interface SingleValueGreaterPredicate {\n  /** Comparison operator */\n  readonly operator: 'Greater';\n\n  /** Reference value, NA values will not match */\n  readonly reference: string | number;\n}\n\nexport interface SingleValueGreaterOrEqualPredicate {\n  /** Comparison operator */\n  readonly operator: 'GreaterOrEqual';\n\n  /** Reference value, NA values will not match */\n  readonly reference: string | number;\n}\n\nexport interface SingleValueStringContainsPredicate {\n  /** Comparison operator */\n  readonly operator: 'StringContains';\n\n  /** Reference substring, NA values are skipped */\n  readonly substring: string;\n}\n\nexport interface SingleValueStringIContainsPredicate {\n  /** Comparison operator (case insensitive) */\n  readonly operator: 'StringIContains';\n\n  /** Reference substring, NA values are skipped */\n  readonly substring: string;\n}\n\nexport interface SingleValueMatchesPredicate {\n  /** Comparison operator */\n  readonly operator: 'Matches';\n\n  /** Regular expression, NA values are skipped */\n  readonly regex: string;\n}\n\nexport interface SingleValueStringContainsFuzzyPredicate {\n  /** Comparison operator */\n  readonly operator: 'StringContainsFuzzy';\n\n  /** Reference value, NA values are skipped */\n  readonly reference: string;\n\n  /**\n   * Integer specifying the upper bound of edit distance between\n   * reference and actual value.\n   * When {@link substitutionsOnly} is not defined or set to false\n   * Levenshtein distance is used (substitutions and indels)\n   * @see https://en.wikipedia.org/wiki/Levenshtein_distance\n   * When {@link substitutionsOnly} is set to true\n   * Hamming distance is used (substitutions only)\n   * @see https://en.wikipedia.org/wiki/Hamming_distance\n   */\n  readonly maxEdits: number;\n\n  /** Changes the type of edit distance in {@link maxEdits} */\n  readonly substitutionsOnly?: boolean;\n\n  /**\n   * Some character in {@link reference} that will match any\n   * single character in searched text.\n   */\n  readonly wildcard?: string;\n}\n\nexport interface SingleValueStringIContainsFuzzyPredicate {\n  /** Comparison operator (case insensitive) */\n  readonly operator: 'StringIContainsFuzzy';\n\n  /** Reference value, NA values are skipped */\n  readonly reference: string;\n\n  /**\n   * Integer specifying the upper bound of edit distance between\n   * reference and actual value.\n   * When {@link substitutionsOnly} is not defined or set to false\n   * Levenshtein distance is used (substitutions and indels)\n   * @see https://en.wikipedia.org/wiki/Levenshtein_distance\n   * When {@link substitutionsOnly} is set to true\n   * Hamming distance is used (substitutions only)\n   * @see https://en.wikipedia.org/wiki/Hamming_distance\n   */\n  readonly maxEdits: number;\n\n  /** Changes the type of edit distance in {@link maxEdits} */\n  readonly substitutionsOnly?: boolean;\n\n  /**\n   * Some character in {@link reference} that will match any\n   * single character in searched text.\n   */\n  readonly wildcard?: string;\n}\n\nexport interface SingleValueNotPredicateV2 {\n  /** Comparison operator */\n  readonly operator: 'Not';\n\n  /** Operand to negate */\n  readonly operand: SingleValuePredicateV2;\n}\n\nexport interface SingleValueAndPredicateV2 {\n  /** Comparison operator */\n  readonly operator: 'And';\n\n  /** Operands to combine */\n  readonly operands: SingleValuePredicateV2[];\n}\n\nexport interface SingleValueOrPredicateV2 {\n  /** Comparison operator */\n  readonly operator: 'Or';\n\n  /** Operands to combine */\n  readonly operands: SingleValuePredicateV2[];\n}\n\n/** Filtering predicate for a single axis or column value */\nexport type SingleValuePredicateV2 =\n  | SingleValueIsNAPredicate\n  | SingleValueEqualPredicate\n  | SingleValueInSetPredicate\n  | SingleValueLessPredicate\n  | SingleValueLessOrEqualPredicate\n  | SingleValueGreaterPredicate\n  | SingleValueGreaterOrEqualPredicate\n  | SingleValueStringContainsPredicate\n  | SingleValueMatchesPredicate\n  | SingleValueStringContainsFuzzyPredicate\n  | SingleValueNotPredicateV2\n  | SingleValueAndPredicateV2\n  | SingleValueOrPredicateV2\n  | SingleValueIEqualPredicate\n  | SingleValueStringIContainsPredicate\n  | SingleValueStringIContainsFuzzyPredicate;\n\n/**\n * Filter PTable records based on specific axis or column value. If this is an\n * axis value filter and the axis is part of a partitioning key in some of the\n * source PColumns, the filter will be pushed down to those columns, so only\n * specific partitions will be retrieved from the remote storage.\n * */\nexport interface PTableRecordSingleValueFilterV2 {\n  /** Filter type discriminator */\n  readonly type: 'bySingleColumnV2';\n\n  /** Target axis selector to examine values from */\n  readonly column: PTableColumnId;\n\n  /** Value predicate */\n  readonly predicate: SingleValuePredicateV2;\n}\n\n/** Generic PTable records filter */\nexport type PTableRecordFilter = PTableRecordSingleValueFilterV2;\n\n/** Sorting parameters for a PTable.  */\nexport type PTableSorting = {\n  /** Unified column identifier */\n  readonly column: PTableColumnId;\n\n  /** Sorting order */\n  readonly ascending: boolean;\n\n  /** Sorting in respect to NA and absent values */\n  readonly naAndAbsentAreLeastValues: boolean;\n};\n\n/** Information required to instantiate a PTable. */\nexport interface PTableDef<Col> {\n  /** Join tree to populate the PTable */\n  readonly src: JoinEntry<Col>;\n\n  /** Partition filters */\n  readonly partitionFilters: PTableRecordFilter[];\n\n  /** Record filters */\n  readonly filters: PTableRecordFilter[];\n\n  /** Table sorting */\n  readonly sorting: PTableSorting[];\n}\n\n/** Request to create and retrieve entirety of data of PTable. */\nexport type CalculateTableDataRequest<Col> = {\n  /** Join tree to populate the PTable */\n  readonly src: JoinEntry<Col>;\n\n  /** Record filters */\n  readonly filters: PTableRecordFilter[];\n\n  /** Table sorting */\n  readonly sorting: PTableSorting[];\n};\n\n/** Response for {@link CalculateTableDataRequest} */\nexport type CalculateTableDataResponse = FullPTableColumnData[];\n\nexport function mapPTableDef<C1, C2>(\n  def: PTableDef<C1>,\n  cb: (c: C1) => C2,\n): PTableDef<C2> {\n  return { ...def, src: mapJoinEntry(def.src, cb) };\n}\n\nexport function mapJoinEntry<C1, C2>(\n  entry: JoinEntry<C1>,\n  cb: (c: C1) => C2,\n): JoinEntry<C2> {\n  switch (entry.type) {\n    case 'column':\n      return {\n        type: 'column',\n        column: cb(entry.column),\n      };\n    case 'slicedColumn':\n      return {\n        type: 'slicedColumn',\n        column: cb(entry.column),\n        newId: entry.newId,\n        axisFilters: entry.axisFilters,\n      };\n    case 'inlineColumn':\n      return entry;\n    case 'inner':\n    case 'full':\n      return {\n        type: entry.type,\n        entries: entry.entries.map((col) => mapJoinEntry(col, cb)),\n      };\n    case 'outer':\n      return {\n        type: 'outer',\n        primary: mapJoinEntry(entry.primary, cb),\n        secondary: entry.secondary.map((col) => mapJoinEntry(col, cb)),\n      };\n    default:\n      assertNever(entry);\n  }\n}\n"],"names":["assertNever"],"mappings":";;;;AAuXM,SAAU,YAAY,CAC1B,GAAkB,EAClB,EAAiB,EAAA;AAEjB,IAAA,OAAO,EAAE,GAAG,GAAG,EAAE,GAAG,EAAE,YAAY,CAAC,GAAG,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE;AACnD;AAEM,SAAU,YAAY,CAC1B,KAAoB,EACpB,EAAiB,EAAA;AAEjB,IAAA,QAAQ,KAAK,CAAC,IAAI;AAChB,QAAA,KAAK,QAAQ;YACX,OAAO;AACL,gBAAA,IAAI,EAAE,QAAQ;AACd,gBAAA,MAAM,EAAE,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC;aACzB;AACH,QAAA,KAAK,cAAc;YACjB,OAAO;AACL,gBAAA,IAAI,EAAE,cAAc;AACpB,gBAAA,MAAM,EAAE,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC;gBACxB,KAAK,EAAE,KAAK,CAAC,KAAK;gBAClB,WAAW,EAAE,KAAK,CAAC,WAAW;aAC/B;AACH,QAAA,KAAK,cAAc;AACjB,YAAA,OAAO,KAAK;AACd,QAAA,KAAK,OAAO;AACZ,QAAA,KAAK,MAAM;YACT,OAAO;gBACL,IAAI,EAAE,KAAK,CAAC,IAAI;AAChB,gBAAA,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,KAAK,YAAY,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC;aAC3D;AACH,QAAA,KAAK,OAAO;YACV,OAAO;AACL,gBAAA,IAAI,EAAE,OAAO;gBACb,OAAO,EAAE,YAAY,CAAC,KAAK,CAAC,OAAO,EAAE,EAAE,CAAC;AACxC,gBAAA,SAAS,EAAE,KAAK,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,GAAG,KAAK,YAAY,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC;aAC/D;AACH,QAAA;YACEA,gBAAW,CAAC,KAAK,CAAC;;AAExB;;;;;"}

package/dist/drivers/pframe/table_calculate.d.ts

@@ -277,4 +277,3 @@ export type CalculateTableDataRequest<Col> = {
 export type CalculateTableDataResponse = FullPTableColumnData[];
 export declare function mapPTableDef<C1, C2>(def: PTableDef<C1>, cb: (c: C1) => C2): PTableDef<C2>;
 export declare function mapJoinEntry<C1, C2>(entry: JoinEntry<C1>, cb: (c: C1) => C2): JoinEntry<C2>;
-//# sourceMappingURL=table_calculate.d.ts.map

package/dist/drivers/pframe/table_calculate.js

@@ -0,0 +1,40 @@
+import { assertNever } from '../../util.js';
+
+function mapPTableDef(def, cb) {
+    return { ...def, src: mapJoinEntry(def.src, cb) };
+}
+function mapJoinEntry(entry, cb) {
+    switch (entry.type) {
+        case 'column':
+            return {
+                type: 'column',
+                column: cb(entry.column),
+            };
+        case 'slicedColumn':
+            return {
+                type: 'slicedColumn',
+                column: cb(entry.column),
+                newId: entry.newId,
+                axisFilters: entry.axisFilters,
+            };
+        case 'inlineColumn':
+            return entry;
+        case 'inner':
+        case 'full':
+            return {
+                type: entry.type,
+                entries: entry.entries.map((col) => mapJoinEntry(col, cb)),
+            };
+        case 'outer':
+            return {
+                type: 'outer',
+                primary: mapJoinEntry(entry.primary, cb),
+                secondary: entry.secondary.map((col) => mapJoinEntry(col, cb)),
+            };
+        default:
+            assertNever(entry);
+    }
+}
+
+export { mapJoinEntry, mapPTableDef };
+//# sourceMappingURL=table_calculate.js.map

package/dist/drivers/pframe/table_calculate.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"table_calculate.js","sources":["../../../src/drivers/pframe/table_calculate.ts"],"sourcesContent":["import type { PTableColumnId, PTableColumnSpec } from './table_common';\nimport type { PTableVector } from './data_types';\nimport type { PObjectId } from '../../pool';\nimport { assertNever } from '../../util';\nimport type { PColumn } from './spec/spec';\nimport type { PColumnValues } from './data_info';\n\n/** Defines a terminal column node in the join request tree */\nexport interface ColumnJoinEntry<Col> {\n  /** Node type discriminator */\n  readonly type: 'column';\n\n  /** Local column */\n  readonly column: Col;\n}\n\n/**\n * Axis filter slicing target axis from column axes.\n * If the axis has parents or is a parent, slicing cannot be applied (an error will be thrown).\n * */\nexport interface ConstantAxisFilter {\n  /** Filter type discriminator */\n  readonly type: 'constant';\n\n  /** Index of axis to slice (zero-based) */\n  readonly axisIndex: number;\n\n  /** Equality filter reference value, see {@link SingleValueEqualPredicate} */\n  readonly constant: string | number;\n}\n\n/** Defines a terminal column node in the join request tree */\nexport interface SlicedColumnJoinEntry<Col> {\n  /** Node type discriminator */\n  readonly type: 'slicedColumn';\n\n  /** Local column */\n  readonly column: Col;\n\n  /** New column id */\n  readonly newId: PObjectId;\n\n  /** Non-empty list of axis filters */\n  readonly axisFilters: ConstantAxisFilter[];\n}\n\n/** Defines a terminal column node in the join request tree */\nexport interface InlineColumnJoinEntry {\n  /** Node type discriminator */\n  readonly type: 'inlineColumn';\n\n  /** Column definition */\n  readonly column: PColumn<PColumnValues>;\n}\n\n/**\n * Defines a join request tree node that will output only records present in\n * all child nodes ({@link entries}).\n * */\nexport interface InnerJoin<Col> {\n  /** Node type discriminator */\n  readonly type: 'inner';\n\n  /** Child nodes to be inner joined */\n  readonly entries: JoinEntry<Col>[];\n}\n\n/**\n * Defines a join request tree node that will output all records present at\n * least in one of the child nodes ({@link entries}), values for those PColumns\n * that lacks corresponding combinations of axis values will be marked as absent,\n * see {@link PTableVector.absent}.\n * */\nexport interface FullJoin<Col> {\n  /** Node type discriminator */\n  readonly type: 'full';\n\n  /** Child nodes to be fully outer joined */\n  readonly entries: JoinEntry<Col>[];\n}\n\n/**\n * Defines a join request tree node that will output all records present in\n * {@link primary} child node, and records from the {@link secondary} nodes will\n * be added to the output only if present, values for those PColumns from the\n * {@link secondary} list, that lacks corresponding combinations of axis values\n * will be marked as absent, see {@link PTableVector.absent}.\n *\n * This node can be thought as a chain of SQL LEFT JOIN operations starting from\n * the {@link primary} node and adding {@link secondary} nodes one by one.\n * */\nexport interface OuterJoin<Col> {\n  /** Node type discriminator */\n  readonly type: 'outer';\n\n  /** Primes the join operation. Left part of LEFT JOIN. */\n  readonly primary: JoinEntry<Col>;\n\n  /** Driven nodes, giving their values only if primary node have corresponding\n   * nodes. Right parts of LEFT JOIN chain. */\n  readonly secondary: JoinEntry<Col>[];\n}\n\n/**\n * Base type of all join request tree nodes. Join request tree allows to combine\n * information from multiple PColumns into a PTable. Correlation between records\n * is performed by looking for records with the same values in common axis between\n * the PColumns. Common axis are those axis which have equal {@link AxisId} derived\n * from the columns axes spec.\n * */\nexport type JoinEntry<Col> =\n  | ColumnJoinEntry<Col>\n  | SlicedColumnJoinEntry<Col>\n  | InlineColumnJoinEntry\n  | InnerJoin<Col>\n  | FullJoin<Col>\n  | OuterJoin<Col>;\n\n/** Container representing whole data stored in specific PTable column. */\nexport interface FullPTableColumnData {\n  /** Unified spec */\n  readonly spec: PTableColumnSpec;\n\n  /** Data */\n  readonly data: PTableVector;\n}\n\nexport interface SingleValueIsNAPredicate {\n  /** Comparison operator */\n  readonly operator: 'IsNA';\n}\n\nexport interface SingleValueEqualPredicate {\n  /** Comparison operator */\n  readonly operator: 'Equal';\n\n  /** Reference value, NA values will not match */\n  readonly reference: string | number;\n}\n\nexport interface SingleValueInSetPredicate {\n  /** Comparison operator */\n  readonly operator: 'InSet';\n\n  /** Reference values, NA values will not match */\n  readonly references: (string | number)[];\n}\n\nexport interface SingleValueIEqualPredicate {\n  /** Comparison operator (case insensitive) */\n  readonly operator: 'IEqual';\n\n  /** Reference value, NA values will not match */\n  readonly reference: string;\n}\n\nexport interface SingleValueLessPredicate {\n  /** Comparison operator */\n  readonly operator: 'Less';\n\n  /** Reference value, NA values will not match */\n  readonly reference: string | number;\n}\n\nexport interface SingleValueLessOrEqualPredicate {\n  /** Comparison operator */\n  readonly operator: 'LessOrEqual';\n\n  /** Reference value, NA values will not match */\n  readonly reference: string | number;\n}\n\nexport interface SingleValueGreaterPredicate {\n  /** Comparison operator */\n  readonly operator: 'Greater';\n\n  /** Reference value, NA values will not match */\n  readonly reference: string | number;\n}\n\nexport interface SingleValueGreaterOrEqualPredicate {\n  /** Comparison operator */\n  readonly operator: 'GreaterOrEqual';\n\n  /** Reference value, NA values will not match */\n  readonly reference: string | number;\n}\n\nexport interface SingleValueStringContainsPredicate {\n  /** Comparison operator */\n  readonly operator: 'StringContains';\n\n  /** Reference substring, NA values are skipped */\n  readonly substring: string;\n}\n\nexport interface SingleValueStringIContainsPredicate {\n  /** Comparison operator (case insensitive) */\n  readonly operator: 'StringIContains';\n\n  /** Reference substring, NA values are skipped */\n  readonly substring: string;\n}\n\nexport interface SingleValueMatchesPredicate {\n  /** Comparison operator */\n  readonly operator: 'Matches';\n\n  /** Regular expression, NA values are skipped */\n  readonly regex: string;\n}\n\nexport interface SingleValueStringContainsFuzzyPredicate {\n  /** Comparison operator */\n  readonly operator: 'StringContainsFuzzy';\n\n  /** Reference value, NA values are skipped */\n  readonly reference: string;\n\n  /**\n   * Integer specifying the upper bound of edit distance between\n   * reference and actual value.\n   * When {@link substitutionsOnly} is not defined or set to false\n   * Levenshtein distance is used (substitutions and indels)\n   * @see https://en.wikipedia.org/wiki/Levenshtein_distance\n   * When {@link substitutionsOnly} is set to true\n   * Hamming distance is used (substitutions only)\n   * @see https://en.wikipedia.org/wiki/Hamming_distance\n   */\n  readonly maxEdits: number;\n\n  /** Changes the type of edit distance in {@link maxEdits} */\n  readonly substitutionsOnly?: boolean;\n\n  /**\n   * Some character in {@link reference} that will match any\n   * single character in searched text.\n   */\n  readonly wildcard?: string;\n}\n\nexport interface SingleValueStringIContainsFuzzyPredicate {\n  /** Comparison operator (case insensitive) */\n  readonly operator: 'StringIContainsFuzzy';\n\n  /** Reference value, NA values are skipped */\n  readonly reference: string;\n\n  /**\n   * Integer specifying the upper bound of edit distance between\n   * reference and actual value.\n   * When {@link substitutionsOnly} is not defined or set to false\n   * Levenshtein distance is used (substitutions and indels)\n   * @see https://en.wikipedia.org/wiki/Levenshtein_distance\n   * When {@link substitutionsOnly} is set to true\n   * Hamming distance is used (substitutions only)\n   * @see https://en.wikipedia.org/wiki/Hamming_distance\n   */\n  readonly maxEdits: number;\n\n  /** Changes the type of edit distance in {@link maxEdits} */\n  readonly substitutionsOnly?: boolean;\n\n  /**\n   * Some character in {@link reference} that will match any\n   * single character in searched text.\n   */\n  readonly wildcard?: string;\n}\n\nexport interface SingleValueNotPredicateV2 {\n  /** Comparison operator */\n  readonly operator: 'Not';\n\n  /** Operand to negate */\n  readonly operand: SingleValuePredicateV2;\n}\n\nexport interface SingleValueAndPredicateV2 {\n  /** Comparison operator */\n  readonly operator: 'And';\n\n  /** Operands to combine */\n  readonly operands: SingleValuePredicateV2[];\n}\n\nexport interface SingleValueOrPredicateV2 {\n  /** Comparison operator */\n  readonly operator: 'Or';\n\n  /** Operands to combine */\n  readonly operands: SingleValuePredicateV2[];\n}\n\n/** Filtering predicate for a single axis or column value */\nexport type SingleValuePredicateV2 =\n  | SingleValueIsNAPredicate\n  | SingleValueEqualPredicate\n  | SingleValueInSetPredicate\n  | SingleValueLessPredicate\n  | SingleValueLessOrEqualPredicate\n  | SingleValueGreaterPredicate\n  | SingleValueGreaterOrEqualPredicate\n  | SingleValueStringContainsPredicate\n  | SingleValueMatchesPredicate\n  | SingleValueStringContainsFuzzyPredicate\n  | SingleValueNotPredicateV2\n  | SingleValueAndPredicateV2\n  | SingleValueOrPredicateV2\n  | SingleValueIEqualPredicate\n  | SingleValueStringIContainsPredicate\n  | SingleValueStringIContainsFuzzyPredicate;\n\n/**\n * Filter PTable records based on specific axis or column value. If this is an\n * axis value filter and the axis is part of a partitioning key in some of the\n * source PColumns, the filter will be pushed down to those columns, so only\n * specific partitions will be retrieved from the remote storage.\n * */\nexport interface PTableRecordSingleValueFilterV2 {\n  /** Filter type discriminator */\n  readonly type: 'bySingleColumnV2';\n\n  /** Target axis selector to examine values from */\n  readonly column: PTableColumnId;\n\n  /** Value predicate */\n  readonly predicate: SingleValuePredicateV2;\n}\n\n/** Generic PTable records filter */\nexport type PTableRecordFilter = PTableRecordSingleValueFilterV2;\n\n/** Sorting parameters for a PTable.  */\nexport type PTableSorting = {\n  /** Unified column identifier */\n  readonly column: PTableColumnId;\n\n  /** Sorting order */\n  readonly ascending: boolean;\n\n  /** Sorting in respect to NA and absent values */\n  readonly naAndAbsentAreLeastValues: boolean;\n};\n\n/** Information required to instantiate a PTable. */\nexport interface PTableDef<Col> {\n  /** Join tree to populate the PTable */\n  readonly src: JoinEntry<Col>;\n\n  /** Partition filters */\n  readonly partitionFilters: PTableRecordFilter[];\n\n  /** Record filters */\n  readonly filters: PTableRecordFilter[];\n\n  /** Table sorting */\n  readonly sorting: PTableSorting[];\n}\n\n/** Request to create and retrieve entirety of data of PTable. */\nexport type CalculateTableDataRequest<Col> = {\n  /** Join tree to populate the PTable */\n  readonly src: JoinEntry<Col>;\n\n  /** Record filters */\n  readonly filters: PTableRecordFilter[];\n\n  /** Table sorting */\n  readonly sorting: PTableSorting[];\n};\n\n/** Response for {@link CalculateTableDataRequest} */\nexport type CalculateTableDataResponse = FullPTableColumnData[];\n\nexport function mapPTableDef<C1, C2>(\n  def: PTableDef<C1>,\n  cb: (c: C1) => C2,\n): PTableDef<C2> {\n  return { ...def, src: mapJoinEntry(def.src, cb) };\n}\n\nexport function mapJoinEntry<C1, C2>(\n  entry: JoinEntry<C1>,\n  cb: (c: C1) => C2,\n): JoinEntry<C2> {\n  switch (entry.type) {\n    case 'column':\n      return {\n        type: 'column',\n        column: cb(entry.column),\n      };\n    case 'slicedColumn':\n      return {\n        type: 'slicedColumn',\n        column: cb(entry.column),\n        newId: entry.newId,\n        axisFilters: entry.axisFilters,\n      };\n    case 'inlineColumn':\n      return entry;\n    case 'inner':\n    case 'full':\n      return {\n        type: entry.type,\n        entries: entry.entries.map((col) => mapJoinEntry(col, cb)),\n      };\n    case 'outer':\n      return {\n        type: 'outer',\n        primary: mapJoinEntry(entry.primary, cb),\n        secondary: entry.secondary.map((col) => mapJoinEntry(col, cb)),\n      };\n    default:\n      assertNever(entry);\n  }\n}\n"],"names":[],"mappings":";;AAuXM,SAAU,YAAY,CAC1B,GAAkB,EAClB,EAAiB,EAAA;AAEjB,IAAA,OAAO,EAAE,GAAG,GAAG,EAAE,GAAG,EAAE,YAAY,CAAC,GAAG,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE;AACnD;AAEM,SAAU,YAAY,CAC1B,KAAoB,EACpB,EAAiB,EAAA;AAEjB,IAAA,QAAQ,KAAK,CAAC,IAAI;AAChB,QAAA,KAAK,QAAQ;YACX,OAAO;AACL,gBAAA,IAAI,EAAE,QAAQ;AACd,gBAAA,MAAM,EAAE,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC;aACzB;AACH,QAAA,KAAK,cAAc;YACjB,OAAO;AACL,gBAAA,IAAI,EAAE,cAAc;AACpB,gBAAA,MAAM,EAAE,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC;gBACxB,KAAK,EAAE,KAAK,CAAC,KAAK;gBAClB,WAAW,EAAE,KAAK,CAAC,WAAW;aAC/B;AACH,QAAA,KAAK,cAAc;AACjB,YAAA,OAAO,KAAK;AACd,QAAA,KAAK,OAAO;AACZ,QAAA,KAAK,MAAM;YACT,OAAO;gBACL,IAAI,EAAE,KAAK,CAAC,IAAI;AAChB,gBAAA,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,GAAG,KAAK,YAAY,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC;aAC3D;AACH,QAAA,KAAK,OAAO;YACV,OAAO;AACL,gBAAA,IAAI,EAAE,OAAO;gBACb,OAAO,EAAE,YAAY,CAAC,KAAK,CAAC,OAAO,EAAE,EAAE,CAAC;AACxC,gBAAA,SAAS,EAAE,KAAK,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,GAAG,KAAK,YAAY,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC;aAC/D;AACH,QAAA;YACE,WAAW,CAAC,KAAK,CAAC;;AAExB;;;;"}

package/dist/drivers/pframe/table_common.cjs

@@ -0,0 +1,19 @@
+'use strict';
+
+function getPTableColumnId(spec) {
+    switch (spec.type) {
+        case 'axis':
+            return {
+                type: 'axis',
+                id: spec.id,
+            };
+        case 'column':
+            return {
+                type: 'column',
+                id: spec.id,
+            };
+    }
+}
+
+exports.getPTableColumnId = getPTableColumnId;
+//# sourceMappingURL=table_common.cjs.map

package/dist/drivers/pframe/table_common.cjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"table_common.cjs","sources":["../../../src/drivers/pframe/table_common.ts"],"sourcesContent":["import type { PObjectId } from '../../pool';\nimport type { AxisId, AxisSpec, PColumnSpec } from './spec/spec';\n\nexport type PTableColumnSpecAxis = {\n  type: 'axis';\n  id: AxisId;\n  spec: AxisSpec;\n};\n\nexport type PTableColumnSpecColumn = {\n  type: 'column';\n  id: PObjectId;\n  spec: PColumnSpec;\n};\n\n/** Unified spec object for axes and columns */\nexport type PTableColumnSpec = PTableColumnSpecAxis | PTableColumnSpecColumn;\n\nexport type PTableColumnIdAxis = {\n  type: 'axis';\n  id: AxisId;\n};\n\nexport type PTableColumnIdColumn = {\n  type: 'column';\n  id: PObjectId;\n};\n\n/** Unified PTable column identifier */\nexport type PTableColumnId = PTableColumnIdAxis | PTableColumnIdColumn;\n\nexport function getPTableColumnId(spec: PTableColumnSpec): PTableColumnId {\n  switch (spec.type) {\n    case 'axis':\n      return {\n        type: 'axis',\n        id: spec.id,\n      };\n    case 'column':\n      return {\n        type: 'column',\n        id: spec.id,\n      };\n  }\n}\n"],"names":[],"mappings":";;AA+BM,SAAU,iBAAiB,CAAC,IAAsB,EAAA;AACtD,IAAA,QAAQ,IAAI,CAAC,IAAI;AACf,QAAA,KAAK,MAAM;YACT,OAAO;AACL,gBAAA,IAAI,EAAE,MAAM;gBACZ,EAAE,EAAE,IAAI,CAAC,EAAE;aACZ;AACH,QAAA,KAAK,QAAQ;YACX,OAAO;AACL,gBAAA,IAAI,EAAE,QAAQ;gBACd,EAAE,EAAE,IAAI,CAAC,EAAE;aACZ;;AAEP;;;;"}

package/dist/drivers/pframe/table_common.d.ts

@@ -23,4 +23,3 @@ export type PTableColumnIdColumn = {
 /** Unified PTable column identifier */
 export type PTableColumnId = PTableColumnIdAxis | PTableColumnIdColumn;
 export declare function getPTableColumnId(spec: PTableColumnSpec): PTableColumnId;
-//# sourceMappingURL=table_common.d.ts.map

package/dist/drivers/pframe/table_common.js

@@ -0,0 +1,17 @@
+function getPTableColumnId(spec) {
+    switch (spec.type) {
+        case 'axis':
+            return {
+                type: 'axis',
+                id: spec.id,
+            };
+        case 'column':
+            return {
+                type: 'column',
+                id: spec.id,
+            };
+    }
+}
+
+export { getPTableColumnId };
+//# sourceMappingURL=table_common.js.map

package/dist/drivers/pframe/table_common.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"table_common.js","sources":["../../../src/drivers/pframe/table_common.ts"],"sourcesContent":["import type { PObjectId } from '../../pool';\nimport type { AxisId, AxisSpec, PColumnSpec } from './spec/spec';\n\nexport type PTableColumnSpecAxis = {\n  type: 'axis';\n  id: AxisId;\n  spec: AxisSpec;\n};\n\nexport type PTableColumnSpecColumn = {\n  type: 'column';\n  id: PObjectId;\n  spec: PColumnSpec;\n};\n\n/** Unified spec object for axes and columns */\nexport type PTableColumnSpec = PTableColumnSpecAxis | PTableColumnSpecColumn;\n\nexport type PTableColumnIdAxis = {\n  type: 'axis';\n  id: AxisId;\n};\n\nexport type PTableColumnIdColumn = {\n  type: 'column';\n  id: PObjectId;\n};\n\n/** Unified PTable column identifier */\nexport type PTableColumnId = PTableColumnIdAxis | PTableColumnIdColumn;\n\nexport function getPTableColumnId(spec: PTableColumnSpec): PTableColumnId {\n  switch (spec.type) {\n    case 'axis':\n      return {\n        type: 'axis',\n        id: spec.id,\n      };\n    case 'column':\n      return {\n        type: 'column',\n        id: spec.id,\n      };\n  }\n}\n"],"names":[],"mappings":"AA+BM,SAAU,iBAAiB,CAAC,IAAsB,EAAA;AACtD,IAAA,QAAQ,IAAI,CAAC,IAAI;AACf,QAAA,KAAK,MAAM;YACT,OAAO;AACL,gBAAA,IAAI,EAAE,MAAM;gBACZ,EAAE,EAAE,IAAI,CAAC,EAAE;aACZ;AACH,QAAA,KAAK,QAAQ;YACX,OAAO;AACL,gBAAA,IAAI,EAAE,QAAQ;gBACd,EAAE,EAAE,IAAI,CAAC,EAAE;aACZ;;AAEP;;;;"}

package/dist/drivers/pframe/type_util.d.ts

@@ -2,4 +2,3 @@ export type AddParameters<TParameters extends [...args: any], TFunction extends
 export type AddParameterToAllMethods<Interface, TParameters extends [...args: any]> = {
     [Field in keyof Interface]: Interface[Field] extends (...args: any) => any ? AddParameters<TParameters, Interface[Field]> : Interface[Field];
 };
-//# sourceMappingURL=type_util.d.ts.map

package/dist/drivers/pframe/unique_values.d.ts

@@ -19,4 +19,3 @@ export interface UniqueValuesResponse {
     /** True if limit was reached and response contain non-exhaustive list of values. */
     readonly overflow: boolean;
 }
-//# sourceMappingURL=unique_values.d.ts.map

package/dist/drivers/upload.d.ts

@@ -19,4 +19,3 @@ export interface ImportStatus {
     readonly bytesProcessed?: number;
     readonly bytesTotal?: number;
 }
-//# sourceMappingURL=upload.d.ts.map