@milaboratories/pl-middle-layer 1.42.2 → 1.42.3

package/dist/mutator/template/template_loading.js

@@ -0,0 +1,60 @@
+import { field, Pl } from '@milaboratories/pl-client';
+import fs from 'node:fs';
+import { assertNever } from '@milaboratories/ts-helpers';
+import { loadTemplateFromPrepared, loadTemplateFromExplicitDirect } from './direct_template_loader.js';
+
+//
+// Resource schema
+//
+const TengoTemplateGet = { name: 'TengoTemplateGet', version: '1' };
+const TengoTemplateGetRegistry = 'registry';
+const TengoTemplateGetTemplateURI = 'templateURI';
+const TengoTemplateGetTemplate = 'template';
+const TengoTemplatePack = { name: 'TengoTemplatePack', version: '1' };
+const TengoTemplatePackConvert = {
+    name: 'TengoTemplatePackConvert',
+    version: '1',
+};
+const TengoTemplatePackConvertTemplatePack = 'templatePack';
+const TengoTemplatePackConvertTemplate = 'template';
+async function prepareTemplateSpec(tpl) {
+    switch (tpl.type) {
+        case 'from-file':
+            return {
+                type: 'explicit',
+                content: await fs.promises.readFile(tpl.path),
+            };
+        case 'from-registry':
+        case 'explicit':
+            return tpl;
+        case 'prepared':
+            return tpl;
+        default:
+            return assertNever(tpl);
+    }
+}
+function loadTemplateFromRegistry(tx, spec) {
+    const getTemplate = tx.createStruct(TengoTemplateGet);
+    const registry = field(getTemplate, TengoTemplateGetRegistry);
+    const uri = field(getTemplate, TengoTemplateGetTemplateURI);
+    const templateFromRegistry = field(getTemplate, TengoTemplateGetTemplate);
+    // Note: it has a resource schema, so platforma creates fields by itself.
+    tx.setField(registry, tx.createValue(Pl.JsonString, Buffer.from(JSON.stringify(spec.registry))));
+    tx.setField(uri, tx.createValue(Pl.JsonString, Buffer.from(JSON.stringify(spec.path))));
+    return templateFromRegistry;
+}
+function loadTemplate(tx, spec) {
+    switch (spec.type) {
+        case 'from-registry':
+            return loadTemplateFromRegistry(tx, spec);
+        case 'explicit':
+            return loadTemplateFromExplicitDirect(tx, spec);
+        case 'prepared':
+            return loadTemplateFromPrepared(tx, spec);
+        default:
+            return assertNever(spec);
+    }
+}
+
+export { TengoTemplateGet, TengoTemplateGetRegistry, TengoTemplateGetTemplate, TengoTemplateGetTemplateURI, TengoTemplatePack, TengoTemplatePackConvert, TengoTemplatePackConvertTemplate, TengoTemplatePackConvertTemplatePack, loadTemplate, prepareTemplateSpec };
+//# sourceMappingURL=template_loading.js.map

package/dist/mutator/template/template_loading.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"template_loading.js","sources":["../../../src/mutator/template/template_loading.ts"],"sourcesContent":["import type { AnyRef, PlTransaction, ResourceType } from '@milaboratories/pl-client';\nimport { field, Pl } from '@milaboratories/pl-client';\nimport fs from 'node:fs';\nimport type {\n  TemplateFromRegistry,\n  TemplateSpecAny,\n  TemplateSpecPrepared,\n} from '../../model/template_spec';\nimport { assertNever } from '@milaboratories/ts-helpers';\nimport { loadTemplateFromExplicitDirect, loadTemplateFromPrepared } from './direct_template_loader';\n\n//\n// Resource schema\n//\n\nexport const TengoTemplateGet: ResourceType = { name: 'TengoTemplateGet', version: '1' };\nexport const TengoTemplateGetRegistry = 'registry';\nexport const TengoTemplateGetTemplateURI = 'templateURI';\nexport const TengoTemplateGetTemplate = 'template';\n\nexport const TengoTemplatePack: ResourceType = { name: 'TengoTemplatePack', version: '1' };\nexport const TengoTemplatePackConvert: ResourceType = {\n  name: 'TengoTemplatePackConvert',\n  version: '1',\n};\nexport const TengoTemplatePackConvertTemplatePack = 'templatePack';\nexport const TengoTemplatePackConvertTemplate = 'template';\n\nexport async function prepareTemplateSpec(tpl: TemplateSpecAny): Promise<TemplateSpecPrepared> {\n  switch (tpl.type) {\n    case 'from-file':\n      return {\n        type: 'explicit',\n        content: await fs.promises.readFile(tpl.path),\n      };\n    case 'from-registry':\n    case 'explicit':\n      return tpl;\n    case 'prepared':\n      return tpl;\n    default:\n      return assertNever(tpl);\n  }\n}\n\nfunction loadTemplateFromRegistry(tx: PlTransaction, spec: TemplateFromRegistry): AnyRef {\n  const getTemplate = tx.createStruct(TengoTemplateGet);\n  const registry = field(getTemplate, TengoTemplateGetRegistry);\n  const uri = field(getTemplate, TengoTemplateGetTemplateURI);\n  const templateFromRegistry = field(getTemplate, TengoTemplateGetTemplate);\n\n  // Note: it has a resource schema, so platforma creates fields by itself.\n\n  tx.setField(registry, tx.createValue(Pl.JsonString, Buffer.from(JSON.stringify(spec.registry))));\n  tx.setField(uri, tx.createValue(Pl.JsonString, Buffer.from(JSON.stringify(spec.path))));\n\n  return templateFromRegistry;\n}\n\nexport function loadTemplate(tx: PlTransaction, spec: TemplateSpecPrepared): AnyRef {\n  switch (spec.type) {\n    case 'from-registry':\n      return loadTemplateFromRegistry(tx, spec);\n    case 'explicit':\n      return loadTemplateFromExplicitDirect(tx, spec);\n    case 'prepared':\n      return loadTemplateFromPrepared(tx, spec);\n    default:\n      return assertNever(spec);\n  }\n}\n"],"names":[],"mappings":";;;;;AAWA;AACA;AACA;AAEO,MAAM,gBAAgB,GAAiB,EAAE,IAAI,EAAE,kBAAkB,EAAE,OAAO,EAAE,GAAG;AAC/E,MAAM,wBAAwB,GAAG;AACjC,MAAM,2BAA2B,GAAG;AACpC,MAAM,wBAAwB,GAAG;AAEjC,MAAM,iBAAiB,GAAiB,EAAE,IAAI,EAAE,mBAAmB,EAAE,OAAO,EAAE,GAAG;AACjF,MAAM,wBAAwB,GAAiB;AACpD,IAAA,IAAI,EAAE,0BAA0B;AAChC,IAAA,OAAO,EAAE,GAAG;;AAEP,MAAM,oCAAoC,GAAG;AAC7C,MAAM,gCAAgC,GAAG;AAEzC,eAAe,mBAAmB,CAAC,GAAoB,EAAA;AAC5D,IAAA,QAAQ,GAAG,CAAC,IAAI;AACd,QAAA,KAAK,WAAW;YACd,OAAO;AACL,gBAAA,IAAI,EAAE,UAAU;gBAChB,OAAO,EAAE,MAAM,EAAE,CAAC,QAAQ,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC;aAC9C;AACH,QAAA,KAAK,eAAe;AACpB,QAAA,KAAK,UAAU;AACb,YAAA,OAAO,GAAG;AACZ,QAAA,KAAK,UAAU;AACb,YAAA,OAAO,GAAG;AACZ,QAAA;AACE,YAAA,OAAO,WAAW,CAAC,GAAG,CAAC;;AAE7B;AAEA,SAAS,wBAAwB,CAAC,EAAiB,EAAE,IAA0B,EAAA;IAC7E,MAAM,WAAW,GAAG,EAAE,CAAC,YAAY,CAAC,gBAAgB,CAAC;IACrD,MAAM,QAAQ,GAAG,KAAK,CAAC,WAAW,EAAE,wBAAwB,CAAC;IAC7D,MAAM,GAAG,GAAG,KAAK,CAAC,WAAW,EAAE,2BAA2B,CAAC;IAC3D,MAAM,oBAAoB,GAAG,KAAK,CAAC,WAAW,EAAE,wBAAwB,CAAC;;AAIzE,IAAA,EAAE,CAAC,QAAQ,CAAC,QAAQ,EAAE,EAAE,CAAC,WAAW,CAAC,EAAE,CAAC,UAAU,EAAE,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC;AAChG,IAAA,EAAE,CAAC,QAAQ,CAAC,GAAG,EAAE,EAAE,CAAC,WAAW,CAAC,EAAE,CAAC,UAAU,EAAE,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;AAEvF,IAAA,OAAO,oBAAoB;AAC7B;AAEM,SAAU,YAAY,CAAC,EAAiB,EAAE,IAA0B,EAAA;AACxE,IAAA,QAAQ,IAAI,CAAC,IAAI;AACf,QAAA,KAAK,eAAe;AAClB,YAAA,OAAO,wBAAwB,CAAC,EAAE,EAAE,IAAI,CAAC;AAC3C,QAAA,KAAK,UAAU;AACb,YAAA,OAAO,8BAA8B,CAAC,EAAE,EAAE,IAAI,CAAC;AACjD,QAAA,KAAK,UAAU;AACb,YAAA,OAAO,wBAAwB,CAAC,EAAE,EAAE,IAAI,CAAC;AAC3C,QAAA;AACE,YAAA,OAAO,WAAW,CAAC,IAAI,CAAC;;AAE9B;;;;"}

package/dist/mutator/template/template_render.test.d.ts

@@ -1,2 +1 @@
 export {};
-//# sourceMappingURL=template_render.test.d.ts.map

package/dist/network_check/network_check.cjs

@@ -0,0 +1,267 @@
+'use strict';
+
+var plClient = require('@milaboratories/pl-client');
+var tsHelpers = require('@milaboratories/ts-helpers');
+var node_diagnostics_channel = require('node:diagnostics_channel');
+var plDrivers = require('@milaboratories/pl-drivers');
+var pings = require('./pings.cjs');
+var template = require('./template.cjs');
+var node_crypto = require('node:crypto');
+
+/** A utility to check network problems and gather statistics.
+ * It's useful when we cannot connect to the server of a company
+ * because of security reasons,
+ * but they can send us and their DevOps team this report.
+ *
+ * What we check:
+ * - pings to backend
+ * - block registry for block overview and ui.
+ * - autoupdate CDN.
+ * - upload workflow to backend (workflow part via our API).
+ * - the desktop could do multipart upload.
+ * - the desktop could download files from S3.
+ * - backend could download software and run it.
+ * - backend could run python software.
+ * - try to get something from every storage to work storage.
+ *
+ * We don't check backend access to S3 storage, it is checked on the start of backend.
+ */
+/** Checks connectivity to Platforma Backend, to block registry
+ * and to auto-update CDN,
+ * and generates a string report. */
+async function checkNetwork(plCredentials, plUser, plPassword, optsOverrides = {}) {
+    const undiciLogs = [];
+    // Subscribe to all Undici diagnostic events
+    undiciEvents.forEach((event) => {
+        const diagnosticChannel = node_diagnostics_channel.channel(event);
+        diagnosticChannel.subscribe((message) => {
+            const timestamp = new Date().toISOString();
+            const data = { ...message };
+            if (data?.response?.headers) {
+                data.response = { ...data.response };
+                data.response.headers = data.response.headers.slice();
+                data.response.headers = data.response.headers.map((h) => h.toString());
+            }
+            // we try to upload big files, don't include the buffer in the report.
+            if (data?.request?.body) {
+                data.request = { ...data.request };
+                data.request.body = `too big`;
+            }
+            undiciLogs.push(JSON.stringify({
+                timestamp,
+                event,
+                data,
+            }));
+        });
+    });
+    try {
+        const { logger, plConfig, client, signer, downloadClient, uploadBlobClient, lsDriver, httpClient, ops, } = await initNetworkCheck(plCredentials, plUser, plPassword, optsOverrides);
+        const { filePath: filePathToDownload, fileContent: fileContentToDownload } = await template.createTempFile();
+        const { filePath: filePathToUpload } = await template.createBigTempFile();
+        const report = {
+            plPings: await pings.backendPings(ops, plConfig),
+            blockRegistryOverviewChecks: await pings.blockRegistryOverviewPings(ops, httpClient),
+            blockGARegistryOverviewChecks: await pings.blockGARegistryOverviewPings(ops, httpClient),
+            blockRegistryUiChecks: await pings.blockRegistryUiPings(ops, httpClient),
+            blockGARegistryUiChecks: await pings.blockGARegistryUiPings(ops, httpClient),
+            autoUpdateCdnChecks: await pings.autoUpdateCdnPings(ops, httpClient),
+            uploadTemplateCheck: await template.uploadTemplate(logger, client, 'Jack'),
+            uploadFileCheck: await template.uploadFile(logger, signer, lsDriver, uploadBlobClient, client, filePathToUpload),
+            downloadFileCheck: await template.downloadFile(logger, client, lsDriver, uploadBlobClient, downloadClient, filePathToDownload, fileContentToDownload),
+            softwareCheck: await template.softwareCheck(client),
+            pythonSoftwareCheck: await template.pythonSoftware(client, 'Jack'),
+            storageToDownloadReport: await template.downloadFromEveryStorage(logger, client, lsDriver, {
+                minLsRequests: ops.everyStorageMinLsRequests,
+                bytesLimit: ops.everyStorageBytesLimit,
+                minFileSize: ops.everyStorageMinFileSize,
+                maxFileSize: ops.everyStorageMaxFileSize,
+                nFilesToCheck: ops.everyStorageNFilesToCheck,
+            }),
+        };
+        return reportsToString(report, plCredentials, ops, undiciLogs);
+    }
+    catch (e) {
+        return `Unhandled error while checking the network: ${e}`;
+    }
+}
+async function initNetworkCheck(plCredentials, plUser, plPassword, optsOverrides = {}) {
+    const ops = {
+        pingCheckDurationMs: 10000,
+        pingTimeoutMs: 3000,
+        maxPingsPerSecond: 50,
+        httpTimeoutMs: 3000,
+        blockRegistryDurationMs: 3000,
+        maxRegistryChecksPerSecond: 1,
+        blockRegistryUrl: 'https://blocks.pl-open.science',
+        blockGARegistryUrl: 'https://blocks-ga.pl-open.science',
+        blockOverviewPath: 'v2/overview.json',
+        blockUiPath: 'v2/milaboratories/samples-and-data/1.7.0/ui.tgz',
+        autoUpdateCdnDurationMs: 5000,
+        maxAutoUpdateCdnChecksPerSecond: 1,
+        autoUpdateCdnUrl: 'https://cdn.platforma.bio/software/platforma-desktop-v2/windows/amd64/latest.yml',
+        bodyLimit: 300,
+        everyStorageBytesLimit: 1024,
+        everyStorageMinFileSize: 1024,
+        everyStorageMaxFileSize: 200 * 1024 * 1024, // 200 MB
+        everyStorageNFilesToCheck: 300,
+        everyStorageMinLsRequests: 50,
+        ...optsOverrides,
+    };
+    const plConfig = plClient.plAddressToConfig(plCredentials, {
+        defaultRequestTimeout: ops.pingTimeoutMs,
+    });
+    // exposing alternative root for fields not to interfere with
+    // projects of the user.
+    plConfig.alternativeRoot = `check_network_${node_crypto.randomUUID()}`;
+    const uaClient = new plClient.UnauthenticatedPlClient(plConfig);
+    let auth = {};
+    if (plUser && plPassword) {
+        auth = await uaClient.login(plUser, plPassword);
+    }
+    const client = await plClient.PlClient.init(plCredentials, { authInformation: auth });
+    const httpClient = uaClient.ll.httpDispatcher;
+    const logger = new tsHelpers.ConsoleLoggerAdapter();
+    // FIXME: do we need to get an actual secret?
+    const signer = new tsHelpers.HmacSha256Signer('localSecret');
+    // We could initialize middle-layer here, but for now it seems like an overkill.
+    // Here's the code to do it:
+    //
+    // const tmpDir = await fs.mkdtemp(path.join(os.tmpdir(), 'platforma-network-check-'));
+    // const ml = await MiddleLayer.init(client, tmpDir, {
+    //   logger,
+    //   localSecret: '',
+    //   localProjections: [],
+    //   openFileDialogCallback: () => Promise.resolve([]),
+    //   preferredUpdateChannel: 'stable',
+    // });
+    const downloadClient = plDrivers.createDownloadClient(logger, client, []);
+    const uploadBlobClient = plDrivers.createUploadBlobClient(client, logger);
+    const lsDriver = await plDrivers.LsDriver.init(logger, client, signer, [], () => Promise.resolve([]), []);
+    const terminate = async () => {
+        downloadClient.close();
+        uploadBlobClient.close();
+        await httpClient.close();
+        await client.close();
+    };
+    return {
+        logger,
+        plConfig,
+        client,
+        signer,
+        downloadClient,
+        uploadBlobClient,
+        lsDriver,
+        httpClient,
+        ops,
+        terminate,
+    };
+}
+function reportsToString(report, plEndpoint, opts, undiciLogs) {
+    const successPings = report.plPings.filter((p) => p.response.ok);
+    const failedPings = report.plPings.filter((p) => !p.response.ok);
+    const successPingsBodies = [
+        ...new Set(successPings.map((p) => JSON.stringify(p.response.value))),
+    ];
+    const summary = (ok) => ok ? 'OK' : 'FAILED';
+    const templateSummary = (report) => report.status === 'ok' ? 'OK' : report.status === 'warn' ? 'WARN' : 'FAILED';
+    const pings$1 = pings.reportToString(report.plPings);
+    const blockRegistryOverview = pings.reportToString(report.blockRegistryOverviewChecks);
+    const blockGARegistryOverview = pings.reportToString(report.blockGARegistryOverviewChecks);
+    const blockRegistryUi = pings.reportToString(report.blockRegistryUiChecks);
+    const blockGARegistryUi = pings.reportToString(report.blockGARegistryUiChecks);
+    const autoUpdateCdn = pings.reportToString(report.autoUpdateCdnChecks);
+    const storagesSummary = Object.entries(report.storageToDownloadReport)
+        .map(([storage, report]) => `${templateSummary(report)} ${storage} storage check`).join('\n');
+    return `
+${summary(pings$1.ok)} pings to Platforma Backend
+${summary(blockRegistryOverview.ok)} block registry overview
+${summary(blockGARegistryOverview.ok)} block ga registry overview
+${summary(blockRegistryUi.ok)} block registry ui
+${summary(blockGARegistryUi.ok)} block ga registry ui
+${summary(autoUpdateCdn.ok)} auto-update CDN
+${templateSummary(report.uploadTemplateCheck)} upload template
+${templateSummary(report.uploadFileCheck)} upload file
+${templateSummary(report.downloadFileCheck)} download file
+${templateSummary(report.softwareCheck)} software check
+${templateSummary(report.pythonSoftwareCheck)} python software check
+${storagesSummary}
+
+details:
+pl endpoint: ${plEndpoint};
+options: ${JSON.stringify(opts, null, 2)}.
+
+Upload template response: ${report.uploadTemplateCheck.message}
+
+Upload file response: ${report.uploadFileCheck.message}
+
+Download file response: ${report.downloadFileCheck.message}
+
+Software check response: ${report.softwareCheck.message}
+Python software check response: ${report.pythonSoftwareCheck.message}
+Storage to download responses: ${JSON.stringify(report.storageToDownloadReport, null, 2)}
+
+Platforma pings: ${pings$1.details}
+
+Block registry overview responses: ${blockRegistryOverview.details}
+
+Block ga registry overview responses: ${blockGARegistryOverview.details}
+
+Block registry ui responses: ${blockRegistryUi.details}
+
+Block ga registry ui responses: ${blockGARegistryUi.details}
+
+Auto-update CDN responses: ${autoUpdateCdn.details}
+
+dumps:
+Block registry overview dumps:
+${JSON.stringify(report.blockRegistryOverviewChecks, null, 2)}
+
+Block ga registry overview dumps:
+${JSON.stringify(report.blockGARegistryOverviewChecks, null, 2)}
+
+Block registry ui dumps:
+${JSON.stringify(report.blockRegistryUiChecks, null, 2)}
+
+Block ga registry ui dumps:
+${JSON.stringify(report.blockGARegistryUiChecks, null, 2)}
+
+Auto-update CDN dumps:
+${JSON.stringify(report.autoUpdateCdnChecks, null, 2)}
+
+Platforma pings error dumps:
+${JSON.stringify(failedPings, null, 2)}
+
+Platforma pings success dump examples:
+${JSON.stringify(successPingsBodies, null, 2)}
+
+Undici logs:
+${undiciLogs.join('\n')}
+`;
+}
+// List of Undici diagnostic channels
+const undiciEvents = [
+    'undici:request:create', // When a new request is created
+    'undici:request:bodySent', // When the request body is sent
+    'undici:request:headers', // When request headers are sent
+    'undici:request:error', // When a request encounters an error
+    'undici:request:trailers', // When a response completes.
+    'undici:client:sendHeaders',
+    'undici:client:beforeConnect',
+    'undici:client:connected',
+    'undici:client:connectError',
+    'undici:socket:close', // When a socket is closed
+    'undici:socket:connect', // When a socket connects
+    'undici:socket:error', // When a socket encounters an error
+    'undici:pool:request', // When a request is added to the pool
+    'undici:pool:connect', // When a pool creates a new connection
+    'undici:pool:disconnect', // When a pool connection is closed
+    'undici:pool:destroy', // When a pool is destroyed
+    'undici:dispatcher:request', // When a dispatcher processes a request
+    'undici:dispatcher:connect', // When a dispatcher connects
+    'undici:dispatcher:disconnect', // When a dispatcher disconnects
+    'undici:dispatcher:retry', // When a dispatcher retries a request
+];
+
+exports.checkNetwork = checkNetwork;
+exports.initNetworkCheck = initNetworkCheck;
+//# sourceMappingURL=network_check.cjs.map

package/dist/network_check/network_check.cjs.map

@@ -0,0 +1 @@
+{"version":3,"file":"network_check.cjs","sources":["../../src/network_check/network_check.ts"],"sourcesContent":["/** A utility to check network problems and gather statistics.\n * It's useful when we cannot connect to the server of a company\n * because of security reasons,\n * but they can send us and their DevOps team this report.\n *\n * What we check:\n * - pings to backend\n * - block registry for block overview and ui.\n * - autoupdate CDN.\n * - upload workflow to backend (workflow part via our API).\n * - the desktop could do multipart upload.\n * - the desktop could download files from S3.\n * - backend could download software and run it.\n * - backend could run python software.\n * - try to get something from every storage to work storage.\n *\n * We don't check backend access to S3 storage, it is checked on the start of backend.\n */\n\nimport type { AuthInformation, PlClientConfig } from '@milaboratories/pl-client';\nimport { PlClient, UnauthenticatedPlClient, plAddressToConfig } from '@milaboratories/pl-client';\nimport type { MiLogger, Signer } from '@milaboratories/ts-helpers';\nimport { ConsoleLoggerAdapter, HmacSha256Signer } from '@milaboratories/ts-helpers';\nimport { channel } from 'node:diagnostics_channel';\nimport type { ClientDownload, ClientUpload } from '@milaboratories/pl-drivers';\nimport { LsDriver, createDownloadClient, createUploadBlobClient } from '@milaboratories/pl-drivers';\nimport type { HttpNetworkReport, NetworkReport } from './pings';\nimport { autoUpdateCdnPings, backendPings, blockGARegistryOverviewPings, blockGARegistryUiPings, blockRegistryOverviewPings, blockRegistryUiPings, reportToString } from './pings';\nimport type { Dispatcher } from 'undici';\nimport type { TemplateReport } from './template';\nimport { uploadTemplate, uploadFile, downloadFile, createTempFile, pythonSoftware, softwareCheck, createBigTempFile, downloadFromEveryStorage } from './template';\nimport { randomUUID } from 'node:crypto';\n\n/** All reports we need to collect. */\ninterface NetworkReports {\n  plPings: NetworkReport<string>[];\n\n  blockRegistryOverviewChecks: HttpNetworkReport[];\n  blockGARegistryOverviewChecks: HttpNetworkReport[];\n  blockRegistryUiChecks: HttpNetworkReport[];\n  blockGARegistryUiChecks: HttpNetworkReport[];\n\n  autoUpdateCdnChecks: HttpNetworkReport[];\n\n  uploadTemplateCheck: TemplateReport;\n  uploadFileCheck: TemplateReport;\n  downloadFileCheck: TemplateReport;\n  softwareCheck: TemplateReport;\n  pythonSoftwareCheck: TemplateReport;\n  storageToDownloadReport: Record<string, TemplateReport>;\n}\n\nexport interface CheckNetworkOpts {\n  /** Platforma Backend pings options. */\n  pingCheckDurationMs: number;\n  pingTimeoutMs: number;\n  maxPingsPerSecond: number;\n\n  /** An options for CDN and block registry. */\n  httpTimeoutMs: number;\n\n  /** Block registry pings options. */\n  blockRegistryDurationMs: number;\n  maxRegistryChecksPerSecond: number;\n  blockRegistryUrl: string;\n  blockGARegistryUrl: string;\n  blockOverviewPath: string;\n  blockUiPath: string;\n\n  /** CDN for auto-update pings options. */\n  autoUpdateCdnDurationMs: number;\n  maxAutoUpdateCdnChecksPerSecond: number;\n  autoUpdateCdnUrl: string;\n\n  /** Body limit for requests. */\n  bodyLimit: number;\n\n  /** Limit for the size of files to download from every storage. */\n  everyStorageBytesLimit: number;\n  /** Minimal size of files to create a directory from for every storage. */\n  everyStorageMinFileSize: number;\n  /** Maximal size of files to create a directory from for every storage. */\n  everyStorageMaxFileSize: number;\n  /** How many files to check from every storage. */\n  everyStorageNFilesToCheck: number;\n  /** Minimal number of ls requests for every storage. */\n  everyStorageMinLsRequests: number;\n}\n\n/** Checks connectivity to Platforma Backend, to block registry\n * and to auto-update CDN,\n * and generates a string report. */\nexport async function checkNetwork(\n  plCredentials: string,\n  plUser: string | undefined,\n  plPassword: string | undefined,\n  optsOverrides: Partial<CheckNetworkOpts> = {},\n): Promise<string> {\n  const undiciLogs: any[] = [];\n  // Subscribe to all Undici diagnostic events\n  undiciEvents.forEach((event) => {\n    const diagnosticChannel = channel(event);\n    diagnosticChannel.subscribe((message: any) => {\n      const timestamp = new Date().toISOString();\n      const data = { ...message };\n      if (data?.response?.headers) {\n        data.response = { ...data.response };\n        data.response.headers = data.response.headers.slice();\n        data.response.headers = data.response.headers.map((h: any) => h.toString());\n      }\n\n      // we try to upload big files, don't include the buffer in the report.\n      if (data?.request?.body) {\n        data.request = { ...data.request };\n        data.request.body = `too big`;\n      }\n\n      undiciLogs.push(\n        JSON.stringify({\n          timestamp,\n          event,\n          data,\n        }),\n      );\n    });\n  });\n\n  try {\n    const {\n      logger,\n      plConfig,\n      client,\n      signer,\n      downloadClient,\n      uploadBlobClient,\n      lsDriver,\n      httpClient,\n      ops,\n    } = await initNetworkCheck(plCredentials, plUser, plPassword, optsOverrides);\n\n    const { filePath: filePathToDownload, fileContent: fileContentToDownload } = await createTempFile();\n    const { filePath: filePathToUpload } = await createBigTempFile();\n\n    const report: NetworkReports = {\n      plPings: await backendPings(ops, plConfig),\n      blockRegistryOverviewChecks: await blockRegistryOverviewPings(ops, httpClient),\n      blockGARegistryOverviewChecks: await blockGARegistryOverviewPings(ops, httpClient),\n      blockRegistryUiChecks: await blockRegistryUiPings(ops, httpClient),\n      blockGARegistryUiChecks: await blockGARegistryUiPings(ops, httpClient),\n\n      autoUpdateCdnChecks: await autoUpdateCdnPings(ops, httpClient),\n\n      uploadTemplateCheck: await uploadTemplate(logger, client, 'Jack'),\n      uploadFileCheck: await uploadFile(logger, signer, lsDriver, uploadBlobClient, client, filePathToUpload),\n      downloadFileCheck: await downloadFile(logger, client, lsDriver, uploadBlobClient, downloadClient, filePathToDownload, fileContentToDownload),\n      softwareCheck: await softwareCheck(client),\n      pythonSoftwareCheck: await pythonSoftware(client, 'Jack'),\n      storageToDownloadReport: await downloadFromEveryStorage(\n        logger,\n        client,\n        lsDriver,\n        {\n          minLsRequests: ops.everyStorageMinLsRequests,\n          bytesLimit: ops.everyStorageBytesLimit,\n          minFileSize: ops.everyStorageMinFileSize,\n          maxFileSize: ops.everyStorageMaxFileSize,\n          nFilesToCheck: ops.everyStorageNFilesToCheck,\n        },\n      ),\n    };\n\n    return reportsToString(report, plCredentials, ops, undiciLogs);\n  } catch (e) {\n    return `Unhandled error while checking the network: ${e}`;\n  }\n}\n\nexport async function initNetworkCheck(\n  plCredentials: string,\n  plUser: string | undefined,\n  plPassword: string | undefined,\n  optsOverrides: Partial<CheckNetworkOpts> = {},\n): Promise<{\n    logger: MiLogger;\n    plConfig: PlClientConfig;\n    signer: Signer;\n    client: PlClient;\n    downloadClient: ClientDownload;\n    uploadBlobClient: ClientUpload;\n    lsDriver: LsDriver;\n    httpClient: Dispatcher;\n    ops: CheckNetworkOpts;\n    terminate: () => Promise<void>;\n  }> {\n  const ops: CheckNetworkOpts = {\n    pingCheckDurationMs: 10000,\n    pingTimeoutMs: 3000,\n    maxPingsPerSecond: 50,\n\n    httpTimeoutMs: 3000,\n\n    blockRegistryDurationMs: 3000,\n    maxRegistryChecksPerSecond: 1,\n\n    blockRegistryUrl: 'https://blocks.pl-open.science',\n    blockGARegistryUrl: 'https://blocks-ga.pl-open.science',\n    blockOverviewPath: 'v2/overview.json',\n    blockUiPath: 'v2/milaboratories/samples-and-data/1.7.0/ui.tgz',\n\n    autoUpdateCdnDurationMs: 5000,\n    maxAutoUpdateCdnChecksPerSecond: 1,\n    autoUpdateCdnUrl:\n      'https://cdn.platforma.bio/software/platforma-desktop-v2/windows/amd64/latest.yml',\n\n    bodyLimit: 300,\n\n    everyStorageBytesLimit: 1024,\n    everyStorageMinFileSize: 1024,\n    everyStorageMaxFileSize: 200 * 1024 * 1024, // 200 MB\n    everyStorageNFilesToCheck: 300,\n    everyStorageMinLsRequests: 50,\n    ...optsOverrides,\n  };\n\n  const plConfig = plAddressToConfig(plCredentials, {\n    defaultRequestTimeout: ops.pingTimeoutMs,\n  });\n\n  // exposing alternative root for fields not to interfere with\n  // projects of the user.\n  plConfig.alternativeRoot = `check_network_${randomUUID()}`;\n\n  const uaClient = new UnauthenticatedPlClient(plConfig);\n\n  let auth: AuthInformation = {};\n  if (plUser && plPassword) {\n    auth = await uaClient.login(plUser, plPassword);\n  }\n\n  const client = await PlClient.init(plCredentials, { authInformation: auth });\n\n  const httpClient = uaClient.ll.httpDispatcher;\n  const logger = new ConsoleLoggerAdapter();\n\n  // FIXME: do we need to get an actual secret?\n  const signer = new HmacSha256Signer('localSecret');\n\n  // We could initialize middle-layer here, but for now it seems like an overkill.\n  // Here's the code to do it:\n  //\n  // const tmpDir = await fs.mkdtemp(path.join(os.tmpdir(), 'platforma-network-check-'));\n  // const ml = await MiddleLayer.init(client, tmpDir, {\n  //   logger,\n  //   localSecret: '',\n  //   localProjections: [],\n  //   openFileDialogCallback: () => Promise.resolve([]),\n  //   preferredUpdateChannel: 'stable',\n  // });\n\n  const downloadClient = createDownloadClient(logger, client, []);\n  const uploadBlobClient = createUploadBlobClient(client, logger);\n\n  const lsDriver = await LsDriver.init(\n    logger,\n    client,\n    signer,\n    [],\n    () => Promise.resolve([]),\n    [],\n  );\n\n  const terminate = async () => {\n    downloadClient.close();\n    uploadBlobClient.close();\n    await httpClient.close();\n    await client.close();\n  };\n\n  return {\n    logger,\n    plConfig,\n    client,\n    signer,\n    downloadClient,\n    uploadBlobClient,\n    lsDriver,\n    httpClient,\n    ops,\n    terminate,\n  };\n}\n\nfunction reportsToString(\n  report: NetworkReports,\n  plEndpoint: string,\n  opts: CheckNetworkOpts,\n  undiciLogs: any[],\n): string {\n  const successPings = report.plPings.filter((p) => p.response.ok);\n  const failedPings = report.plPings.filter((p) => !p.response.ok);\n  const successPingsBodies = [\n    ...new Set(successPings.map((p) => JSON.stringify((p.response as any).value))),\n  ];\n\n  const summary = (ok: boolean) => ok ? 'OK' : 'FAILED';\n  const templateSummary = (report: TemplateReport) => report.status === 'ok' ? 'OK' : report.status === 'warn' ? 'WARN' : 'FAILED';\n\n  const pings = reportToString(report.plPings);\n  const blockRegistryOverview = reportToString(report.blockRegistryOverviewChecks);\n  const blockGARegistryOverview = reportToString(report.blockGARegistryOverviewChecks);\n  const blockRegistryUi = reportToString(report.blockRegistryUiChecks);\n  const blockGARegistryUi = reportToString(report.blockGARegistryUiChecks);\n  const autoUpdateCdn = reportToString(report.autoUpdateCdnChecks);\n\n  const storagesSummary = Object.entries(report.storageToDownloadReport)\n    .map(([storage, report]) => `${templateSummary(report)} ${storage} storage check`).join('\\n');\n\n  return `\n${summary(pings.ok)} pings to Platforma Backend\n${summary(blockRegistryOverview.ok)} block registry overview\n${summary(blockGARegistryOverview.ok)} block ga registry overview\n${summary(blockRegistryUi.ok)} block registry ui\n${summary(blockGARegistryUi.ok)} block ga registry ui\n${summary(autoUpdateCdn.ok)} auto-update CDN\n${templateSummary(report.uploadTemplateCheck)} upload template\n${templateSummary(report.uploadFileCheck)} upload file\n${templateSummary(report.downloadFileCheck)} download file\n${templateSummary(report.softwareCheck)} software check\n${templateSummary(report.pythonSoftwareCheck)} python software check\n${storagesSummary}\n\ndetails:\npl endpoint: ${plEndpoint};\noptions: ${JSON.stringify(opts, null, 2)}.\n\nUpload template response: ${report.uploadTemplateCheck.message}\n\nUpload file response: ${report.uploadFileCheck.message}\n\nDownload file response: ${report.downloadFileCheck.message}\n\nSoftware check response: ${report.softwareCheck.message}\nPython software check response: ${report.pythonSoftwareCheck.message}\nStorage to download responses: ${JSON.stringify(report.storageToDownloadReport, null, 2)}\n\nPlatforma pings: ${pings.details}\n\nBlock registry overview responses: ${blockRegistryOverview.details}\n\nBlock ga registry overview responses: ${blockGARegistryOverview.details}\n\nBlock registry ui responses: ${blockRegistryUi.details}\n\nBlock ga registry ui responses: ${blockGARegistryUi.details}\n\nAuto-update CDN responses: ${autoUpdateCdn.details}\n\ndumps:\nBlock registry overview dumps:\n${JSON.stringify(report.blockRegistryOverviewChecks, null, 2)}\n\nBlock ga registry overview dumps:\n${JSON.stringify(report.blockGARegistryOverviewChecks, null, 2)}\n\nBlock registry ui dumps:\n${JSON.stringify(report.blockRegistryUiChecks, null, 2)}\n\nBlock ga registry ui dumps:\n${JSON.stringify(report.blockGARegistryUiChecks, null, 2)}\n\nAuto-update CDN dumps:\n${JSON.stringify(report.autoUpdateCdnChecks, null, 2)}\n\nPlatforma pings error dumps:\n${JSON.stringify(failedPings, null, 2)}\n\nPlatforma pings success dump examples:\n${JSON.stringify(successPingsBodies, null, 2)}\n\nUndici logs:\n${undiciLogs.join('\\n')}\n`;\n}\n\n// List of Undici diagnostic channels\nconst undiciEvents: string[] = [\n  'undici:request:create', // 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'undici:dispatcher:disconnect', // When a dispatcher disconnects\n  'undici:dispatcher:retry', // When a dispatcher retries a 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package/dist/network_check/network_check.d.ts

@@ -49,4 +49,3 @@ export declare function initNetworkCheck(plCredentials: string, plUser: string |
     ops: CheckNetworkOpts;
     terminate: () => Promise<void>;
 }>;
-//# sourceMappingURL=network_check.d.ts.map