@milaboratories/miplots4 1.0.145 → 1.0.147

package/dist/heatmap/components/tooltipUtils.js

@@ -0,0 +1,44 @@
+import { format as s } from "../../node_modules/d3-format/src/defaultLocale.js";
+function l(n, o) {
+  if (n === null)
+    return "null";
+  if (typeof n == "number") {
+    if (o)
+      return s(o)(n);
+    const e = n > 0 ? Math.floor(n) : Math.ceil(n), t = n - e;
+    return e + Number(t.toPrecision(2));
+  }
+  return n;
+}
+function c(n, o, e, t = []) {
+  const i = `${l(o.value)}${o.value !== o.normalizedValue ? ` (${l(o.normalizedValue)})` : ""}`;
+  if (t.length) {
+    const r = [
+      `Value: ${i}`
+    ];
+    for (const u of t) {
+      const f = n.getColumnValue(u.value, o.idx);
+      r.push(`${u.label}: ${l(f, u.format)}`);
+    }
+    return r;
+  }
+  return [i];
+}
+function m(n, o) {
+  const e = [];
+  return n.xKey && e.push(`X: ${o.xLabels[n.xKey]}`), n.yKey && e.push(`Y: ${o.yLabels[n.yKey]}`), e.push(`${n.title}: ${l(n.value, n.column.format)}`), e;
+}
+function p(n) {
+  return n !== null && "isAnnotation" in n;
+}
+function $(n) {
+  return n !== null && "isCell" in n;
+}
+export {
+  l as formatCellValue,
+  m as getAnnotationTooltipContent,
+  c as getTooltipContent,
+  p as isAnnotationTooltip,
+  $ as isCellTooltip
+};
+//# sourceMappingURL=tooltipUtils.js.map

package/dist/heatmap/components/tooltipUtils.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"tooltipUtils.js","sources":["../../../src/heatmap/components/tooltipUtils.ts"],"sourcesContent":["import { format as d3format } from 'd3-format';\nimport type { DataFrame } from '../../DataFrame';\nimport type { ColumnName, DataValue } from '../../types';\nimport type { Cell, GroupedCellsData } from '../getCells';\nimport type { AnnotationTooltipData } from './types';\n\nexport function formatCellValue(v: DataValue, format?: string): number | string {\n    if (v === null) {\n        return 'null';\n    }\n    if (typeof v === 'number') {\n        if (format) {\n            return d3format(format)(v);\n        }\n        const whole = v > 0 ? Math.floor(v) : Math.ceil(v);\n        const decimal = v - whole;\n        return whole + Number(decimal.toPrecision(2));\n    }\n    return v;\n}\nexport function getTooltipContent(\n    dataFrame: DataFrame,\n    cell: Cell,\n    cellsMeta: GroupedCellsData['meta'],\n    columnsList: ColumnName[] = []\n) {\n    const value = `${formatCellValue(cell.value)}${cell.value !== cell.normalizedValue ? ` (${formatCellValue(cell.normalizedValue)})` : ''}`;\n    if (columnsList.length) {\n        const lines = [\n            `Value: ${value}`,\n        ];\n        for (const column of columnsList) {\n            const value = dataFrame.getColumnValue(column.value, cell.idx);\n            lines.push(`${column.label}: ${formatCellValue(value, column.format)}`);\n        }\n        return lines;\n    }\n\n    return [value];\n}\nexport function getAnnotationTooltipContent(data: AnnotationTooltipData, cellsMeta: GroupedCellsData['meta']) {\n    const lines: string[] = [];\n    if (data.xKey) {\n        lines.push(`X: ${cellsMeta.xLabels[data.xKey as string]}`);\n    }\n    if (data.yKey) {\n        lines.push(`Y: ${cellsMeta.yLabels[data.yKey as string]}`);\n    }\n    lines.push(`${data.title}: ${formatCellValue(data.value, data.column.format)}`);\n    return lines;\n}\n\nexport function isAnnotationTooltip(d: Cell | AnnotationTooltipData | null): d is AnnotationTooltipData {\n    return d !== null && 'isAnnotation' in d;\n}\n\nexport function isCellTooltip(d: Cell | AnnotationTooltipData | null): d is Cell {\n    return d !== null && 'isCell' in d;\n}\n"],"names":["formatCellValue","v","format","d3format","whole","decimal","getTooltipContent","dataFrame","cell","cellsMeta","columnsList","value","lines","column","getAnnotationTooltipContent","data","isAnnotationTooltip","d","isCellTooltip"],"mappings":";AAMO,SAASA,EAAgBC,GAAcC,GAAkC;AAC5E,MAAID,MAAM;AACN,WAAO;AAEX,MAAI,OAAOA,KAAM,UAAU;AACvB,QAAIC;AACA,aAAOC,EAASD,CAAM,EAAED,CAAC;AAE7B,UAAMG,IAAQH,IAAI,IAAI,KAAK,MAAMA,CAAC,IAAI,KAAK,KAAKA,CAAC,GAC3CI,IAAUJ,IAAIG;AACpB,WAAOA,IAAQ,OAAOC,EAAQ,YAAY,CAAC,CAAC;AAAA,EAChD;AACA,SAAOJ;AACX;AACO,SAASK,EACZC,GACAC,GACAC,GACAC,IAA4B,CAAA,GAC9B;AACE,QAAMC,IAAQ,GAAGX,EAAgBQ,EAAK,KAAK,CAAC,GAAGA,EAAK,UAAUA,EAAK,kBAAkB,KAAKR,EAAgBQ,EAAK,eAAe,CAAC,MAAM,EAAE;AACvI,MAAIE,EAAY,QAAQ;AACpB,UAAME,IAAQ;AAAA,MACV,UAAUD,CAAK;AAAA,IAAA;AAEnB,eAAWE,KAAUH,GAAa;AAC9B,YAAMC,IAAQJ,EAAU,eAAeM,EAAO,OAAOL,EAAK,GAAG;AAC7D,MAAAI,EAAM,KAAK,GAAGC,EAAO,KAAK,KAAKb,EAAgBW,GAAOE,EAAO,MAAM,CAAC,EAAE;AAAA,IAC1E;AACA,WAAOD;AAAA,EACX;AAEA,SAAO,CAACD,CAAK;AACjB;AACO,SAASG,EAA4BC,GAA6BN,GAAqC;AAC1G,QAAMG,IAAkB,CAAA;AACxB,SAAIG,EAAK,QACLH,EAAM,KAAK,MAAMH,EAAU,QAAQM,EAAK,IAAc,CAAC,EAAE,GAEzDA,EAAK,QACLH,EAAM,KAAK,MAAMH,EAAU,QAAQM,EAAK,IAAc,CAAC,EAAE,GAE7DH,EAAM,KAAK,GAAGG,EAAK,KAAK,KAAKf,EAAgBe,EAAK,OAAOA,EAAK,OAAO,MAAM,CAAC,EAAE,GACvEH;AACX;AAEO,SAASI,EAAoBC,GAAoE;AACpG,SAAOA,MAAM,QAAQ,kBAAkBA;AAC3C;AAEO,SAASC,EAAcD,GAAmD;AAC7E,SAAOA,MAAM,QAAQ,YAAYA;AACrC;"}

package/dist/heatmap/components/types.d.ts

@@ -69,7 +69,6 @@ export interface ChartDimensionsData {
 export type Cluster = {
     height: number;
     indexes: number[];
-    keys: string[];
     children: Cluster[];
 };
 export type ChartDendrograms = {
@@ -103,6 +102,14 @@ export type AnnotationTooltipData = {
     yKey: DataValue | null;
     value: DataValue;
     title: string;
+    cell: {
+        x: number;
+        y: number;
+        width: number;
+        height: number;
+        fill: string;
+        stroke: string;
+    };
     column: ColumnName;
 };
 //# sourceMappingURL=types.d.ts.map

package/dist/heatmap/components/types.d.ts.map

@@ -1 +1 @@
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package/dist/heatmap/constants.d.ts

@@ -18,4 +18,5 @@ export declare const CHART_SIDE_ELEMENTS: {
     bottom: string[];
 };
 export declare const DEFAULT_AES: AesItem;
+export declare const MAX_SVG_RENDERED_CELLS_COUNT = 500000;
 //# sourceMappingURL=constants.d.ts.map

package/dist/heatmap/constants.d.ts.map

@@ -1 +1 @@
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package/dist/heatmap/constants.js

@@ -1,10 +1,10 @@
 import { BLACK as o } from "../constants.js";
-const n = 15, s = 8, T = 30, i = 48, E = 24, _ = 16, I = 4, a = 4, e = 20, S = 16, l = 16, N = 8, c = {
+const n = 15, s = 8, T = 30, E = 48, i = 24, _ = 16, e = 4, I = 4, a = 20, S = 16, N = 16, c = 8, l = {
   left: ["annotations", "axis", "groups", "axisTitle", "dendro"],
   right: ["annotations", "axis", "groups", "axisTitle", "dendro"],
   top: ["annotations", "axis", "groups", "axisTitle", "dendro", "facetTitle"],
   bottom: ["annotations", "axis", "groups", "axisTitle", "dendro"]
-}, F = {
+}, A = {
   fillColor: "white",
   lineColor: o,
   lineWidth: 1,
@@ -12,21 +12,22 @@ const n = 15, s = 8, T = 30, i = 48, E = 24, _ = 16, I = 4, a = 4, e = 20, S = 1
   dotSize: 3,
   dotFill: o,
   dotShape: "21"
-};
+}, F = 5e5;
 export {
-  N as ANNOTATIONS_OFFSET,
-  l as ANNOTATION_WIDTH,
-  c as CHART_SIDE_ELEMENTS,
-  F as DEFAULT_AES,
-  a as DEFAULT_TICKS_SIZE,
-  i as FACET_TITLE_LINE,
-  E as FACET_TITLE_OFFSET,
+  c as ANNOTATIONS_OFFSET,
+  N as ANNOTATION_WIDTH,
+  l as CHART_SIDE_ELEMENTS,
+  A as DEFAULT_AES,
+  I as DEFAULT_TICKS_SIZE,
+  E as FACET_TITLE_LINE,
+  i as FACET_TITLE_OFFSET,
   S as FONT_SIZE,
-  e as LEGEND_OFFSET,
+  a as LEGEND_OFFSET,
+  F as MAX_SVG_RENDERED_CELLS_COUNT,
   s as MIN_MARGIN,
   n as MIN_PADDING,
   _ as MIN_STEP_FOR_VISIBLE_LABELS,
-  I as TICK_OFFSET,
+  e as TICK_OFFSET,
   T as TITLE_LINE
 };
 //# sourceMappingURL=constants.js.map

package/dist/heatmap/constants.js.map

@@ -1 +1 @@
-{"version":3,"file":"constants.js","sources":["../../src/heatmap/constants.ts"],"sourcesContent":["import {BLACK} from '../constants';\nimport type {AesItem} from '../types';\n\nexport const MIN_PADDING = 15;\nexport const MIN_MARGIN = 8;\n\nexport const TITLE_LINE = 30;\nexport const FACET_TITLE_LINE = 48;\nexport const FACET_TITLE_OFFSET = 24;\n\nexport const MIN_STEP_FOR_VISIBLE_LABELS = 16;\n\nexport const TICK_OFFSET = 4;\nexport const DEFAULT_TICKS_SIZE = 4;\n\nexport const LEGEND_OFFSET = 20;\nexport const FONT_SIZE = 16;\n\nexport const ANNOTATION_WIDTH = 16;\nexport const ANNOTATIONS_OFFSET = 8;\n\nexport const CHART_SIDE_ELEMENTS = {\n    left: ['annotations', 'axis', 'groups', 'axisTitle', 'dendro'],\n    right: ['annotations', 'axis', 'groups', 'axisTitle', 'dendro'],\n    top: ['annotations', 'axis', 'groups', 'axisTitle', 'dendro', 'facetTitle'],\n    bottom: ['annotations', 'axis', 'groups', 'axisTitle', 'dendro']\n};\n\nexport const DEFAULT_AES:AesItem = {\n    fillColor: 'white',\n    lineColor: BLACK,\n    lineWidth: 1,\n    lineShape: 'solid',\n    dotSize: 3,\n    dotFill: BLACK,\n    dotShape: '21',\n};\n"],"names":["MIN_PADDING","MIN_MARGIN","TITLE_LINE","FACET_TITLE_LINE","FACET_TITLE_OFFSET","MIN_STEP_FOR_VISIBLE_LABELS","TICK_OFFSET","DEFAULT_TICKS_SIZE","LEGEND_OFFSET","FONT_SIZE","ANNOTATION_WIDTH","ANNOTATIONS_OFFSET","CHART_SIDE_ELEMENTS","DEFAULT_AES","BLACK"],"mappings":";AAGO,MAAMA,IAAc,IACdC,IAAa,GAEbC,IAAa,IACbC,IAAmB,IACnBC,IAAqB,IAErBC,IAA8B,IAE9BC,IAAc,GACdC,IAAqB,GAErBC,IAAgB,IAChBC,IAAY,IAEZC,IAAmB,IACnBC,IAAqB,GAErBC,IAAsB;AAAA,EAC/B,MAAM,CAAC,eAAe,QAAQ,UAAU,aAAa,QAAQ;AAAA,EAC7D,OAAO,CAAC,eAAe,QAAQ,UAAU,aAAa,QAAQ;AAAA,EAC9D,KAAK,CAAC,eAAe,QAAQ,UAAU,aAAa,UAAU,YAAY;AAAA,EAC1E,QAAQ,CAAC,eAAe,QAAQ,UAAU,aAAa,QAAQ;AACnE,GAEaC,IAAsB;AAAA,EAC/B,WAAW;AAAA,EACX,WAAWC;AAAA,EACX,WAAW;AAAA,EACX,WAAW;AAAA,EACX,SAAS;AAAA,EACT,SAASA;AAAA,EACT,UAAU;AACd;"}
+{"version":3,"file":"constants.js","sources":["../../src/heatmap/constants.ts"],"sourcesContent":["import {BLACK} from '../constants';\nimport type {AesItem} from '../types';\n\nexport const MIN_PADDING = 15;\nexport const MIN_MARGIN = 8;\n\nexport const TITLE_LINE = 30;\nexport const FACET_TITLE_LINE = 48;\nexport const FACET_TITLE_OFFSET = 24;\n\nexport const MIN_STEP_FOR_VISIBLE_LABELS = 16;\n\nexport const TICK_OFFSET = 4;\nexport const DEFAULT_TICKS_SIZE = 4;\n\nexport const LEGEND_OFFSET = 20;\nexport const FONT_SIZE = 16;\n\nexport const ANNOTATION_WIDTH = 16;\nexport const ANNOTATIONS_OFFSET = 8;\n\nexport const CHART_SIDE_ELEMENTS = {\n    left: ['annotations', 'axis', 'groups', 'axisTitle', 'dendro'],\n    right: ['annotations', 'axis', 'groups', 'axisTitle', 'dendro'],\n    top: ['annotations', 'axis', 'groups', 'axisTitle', 'dendro', 'facetTitle'],\n    bottom: ['annotations', 'axis', 'groups', 'axisTitle', 'dendro']\n};\n\nexport const DEFAULT_AES:AesItem = {\n    fillColor: 'white',\n    lineColor: BLACK,\n    lineWidth: 1,\n    lineShape: 'solid',\n    dotSize: 3,\n    dotFill: BLACK,\n    dotShape: '21',\n};\n\nexport const MAX_SVG_RENDERED_CELLS_COUNT = 500000;\n\n"],"names":["MIN_PADDING","MIN_MARGIN","TITLE_LINE","FACET_TITLE_LINE","FACET_TITLE_OFFSET","MIN_STEP_FOR_VISIBLE_LABELS","TICK_OFFSET","DEFAULT_TICKS_SIZE","LEGEND_OFFSET","FONT_SIZE","ANNOTATION_WIDTH","ANNOTATIONS_OFFSET","CHART_SIDE_ELEMENTS","DEFAULT_AES","BLACK","MAX_SVG_RENDERED_CELLS_COUNT"],"mappings":";AAGO,MAAMA,IAAc,IACdC,IAAa,GAEbC,IAAa,IACbC,IAAmB,IACnBC,IAAqB,IAErBC,IAA8B,IAE9BC,IAAc,GACdC,IAAqB,GAErBC,IAAgB,IAChBC,IAAY,IAEZC,IAAmB,IACnBC,IAAqB,GAErBC,IAAsB;AAAA,EAC/B,MAAM,CAAC,eAAe,QAAQ,UAAU,aAAa,QAAQ;AAAA,EAC7D,OAAO,CAAC,eAAe,QAAQ,UAAU,aAAa,QAAQ;AAAA,EAC9D,KAAK,CAAC,eAAe,QAAQ,UAAU,aAAa,UAAU,YAAY;AAAA,EAC1E,QAAQ,CAAC,eAAe,QAAQ,UAAU,aAAa,QAAQ;AACnE,GAEaC,IAAsB;AAAA,EAC/B,WAAW;AAAA,EACX,WAAWC;AAAA,EACX,WAAW;AAAA,EACX,WAAW;AAAA,EACX,SAAS;AAAA,EACT,SAASA;AAAA,EACT,UAAU;AACd,GAEaC,IAA+B;"}

package/dist/heatmap/getCells.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"getCells.d.ts","sourceRoot":"","sources":["../../src/heatmap/getCells.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,cAAc,CAAC;AAC9C,OAAO,KAAK,EAAE,UAAU,EAAE,SAAS,EAAuB,MAAM,UAAU,CAAC;AAC3E,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,uBAAuB,CAAC;AA8BjE,MAAM,MAAM,IAAI,GAAG;IACf,MAAM,EAAE,IAAI,CAAC;IACb,GAAG,EAAE,MAAM,CAAC;IACZ,EAAE,EAAE,MAAM,CAAC;IACX,KAAK,EAAE,SAAS,CAAC;IACjB,eAAe,EAAE,SAAS,CAAC;IAC3B,CAAC,EAAE,SAAS,CAAC;IACb,CAAC,EAAE,SAAS,CAAC;CAChB,CAAC;AAEF,MAAM,MAAM,gBAAgB,GAAG;IAC3B,IAAI,EAAE;QACF,SAAS,EAAE,MAAM,EAAE,CAAC;QACpB,UAAU,EAAE,MAAM,EAAE,CAAC;QACrB,UAAU,EAAE,MAAM,EAAE,CAAC;QACrB,aAAa,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAC;QACxC,aAAa,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAC;QAExC,cAAc,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAC;QACzC,eAAe,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAC;QAC1C,eAAe,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAC;QAC1C,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QAChC,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QAChC,YAAY,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QACrC,YAAY,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QACrC,WAAW,EAAE,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QAE9B,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,CAAC,CAAC;QACvD,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,CAAC,CAAC;KAC1D,CAAC;IAEF,MAAM,EAAE,MAAM,CACV,MAAM,EACN;QAEI,KAAK,EAAE,MAAM,EAAE,CAAC;QAChB,KAAK,EAAE,MAAM,EAAE,CAAC;QAEhB,aAAa,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAC;QACxC,aAAa,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAC;QAExC,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAC;KAC/C,CACJ,CAAC;CACL,CAAC;AAwBF,wBAAgB,QAAQ,CACpB,IAAI,EAAE,SAAS,EACf,OAAO,EAAE,UAAU,EACnB,OAAO,EAAE,UAAU,EACnB,WAAW,EAAE,UAAU,EACvB,OAAO,EAAE,UAAU,EAAE,EACrB,QAAQ,EAAE,UAAU,EAAE,EACtB,QAAQ,EAAE,UAAU,EAAE,EACtB,WAAW,EAAE,mBAAmB,CAAC,aAAa,CAAC,EAC/C,WAAW,EAAE,mBAAmB,CAAC,aAAa,CAAC,EAC/C,WAAW,EAAE,mBAAmB,CAAC,aAAa,CAAC,EAC/C,aAAa,EAAE,mBAAmB,CAAC,eAAe,CAAC,EACnD,SAAS,EAAE,mBAAmB,CAAC,WAAW,CAAC,EAC3C,SAAS,EAAE,mBAAmB,CAAC,WAAW,CAAC,EAC3C,KAAK,EAAE,mBAAmB,CAAC,eAAe,CAAC,CAAC,OAAO,CAAC,EACpD,KAAK,EAAE,mBAAmB,CAAC,eAAe,CAAC,CAAC,OAAO,CAAC,GACrD,gBAAgB,CAqOlB"}

package/dist/heatmap/getCells.js

@@ -1,41 +1,38 @@
 import v from "../node_modules/lodash/lodash.js";
-import O from "../node_modules/d3-array/src/deviation.js";
+import Z from "../node_modules/d3-array/src/deviation.js";
 import I from "../node_modules/d3-array/src/mean.js";
-import k from "../node_modules/d3-array/src/extent.js";
-const ee = 5e5;
-function te(s) {
-  const o = O(s), l = I(s);
+import O from "../node_modules/d3-array/src/extent.js";
+function k(n) {
+  const o = Z(n), l = I(n);
   return o === void 0 || l === void 0 || o === 0 ? (c) => c : (c) => (c - l) / o;
 }
-function ae(s) {
-  const o = I(s), [l, c] = k(s);
+function ee(n) {
+  const o = I(n), [l, c] = O(n);
   return o === void 0 || l === void 0 || c === void 0 || c === l ? (f) => f : (f) => (f - o) / (c - l);
 }
-function se(s, o) {
-  return s === "standardScaling" ? te(o) : s === "meanNormalization" ? ae(o) : (l) => l;
+function te(n, o) {
+  return n === "standardScaling" ? k(o) : n === "meanNormalization" ? ee(o) : (l) => l;
 }
-function B(s) {
-  if (!s.length)
+function B(n) {
+  if (!n.length)
     return [];
   let o = [[]];
-  return s.forEach((l) => {
+  return n.forEach((l) => {
     const c = [];
     l.forEach((f) => {
-      c.push(...o.map((E) => [...E, f]));
+      c.push(...o.map((d) => [...d, f]));
     }), o = c;
   }), o;
 }
-const z = (s, o, l = {}) => s.sort(
+const _ = (n, o, l = {}) => n.sort(
   (c, f) => o === "asc" ? (l[c] ?? c).localeCompare(l[f] ?? f, "en", { numeric: !0 }) : (l[f] ?? f).localeCompare(l[c] ?? c, "en", { numeric: !0 })
 );
-function ie(s, o, l, c, f, E, d, D, N, X, L, A, x, Y, R) {
-  const S = s.columnNames.length ? s.getColumn(s.columnNames[0]).length : 0;
-  S > ee && console.error(`Too many cells for graph rendering (${S})`);
-  const T = f.length ? f.map((e) => x[e.value] ?? s.getColumnCategories(e.value)) : [["null"]], F = E.length ? E.map((e) => x[e.value] ?? s.getColumnCategories(e.value)) : [["null"]], U = d.length ? d.map((e) => x[e.value] ?? s.getColumnCategories(e.value)) : [["null"]], M = B(T), $ = B(F), j = B(U), _ = M.map((e) => e.join("_")), V = $.map((e) => e.join("_")), b = j.map((e) => e.join("_")), t = {
+function le(n, o, l, c, f, d, b, D, z, X, C, Y, x, A, N) {
+  const F = f.length ? f.map((e) => x[e.value] ?? n.getColumnCategories(e.value)) : [["null"]], R = d.length ? d.map((e) => x[e.value] ?? n.getColumnCategories(e.value)) : [["null"]], H = b.length ? b.map((e) => x[e.value] ?? n.getColumnCategories(e.value)) : [["null"]], S = B(F), M = B(R), j = B(H), $ = S.map((e) => e.join("_")), E = M.map((e) => e.join("_")), L = j.map((e) => e.join("_")), t = {
     meta: {
-      facetKeys: _,
-      xGroupKeys: V,
-      yGroupKeys: b,
+      facetKeys: $,
+      xGroupKeys: E,
+      yGroupKeys: L,
       xKeysByGroups: {},
       yKeysByGroups: {},
       xLabels: {},
@@ -44,17 +41,17 @@ function ie(s, o, l, c, f, E, d, D, N, X, L, A, x, Y, R) {
       yGroupLabels: {},
       xDataByKeys: {},
       yDataByKeys: {},
-      facetKeyValues: _.reduce((e, a, u) => (e[a] = M[u], e), {}),
-      xGroupKeyValues: V.reduce((e, a, u) => (e[a] = $[u], e), {}),
-      yGroupKeyValues: b.reduce((e, a, u) => (e[a] = j[u], e), {}),
+      facetKeyValues: $.reduce((e, a, u) => (e[a] = S[u], e), {}),
+      xGroupKeyValues: E.reduce((e, a, u) => (e[a] = M[u], e), {}),
+      yGroupKeyValues: L.reduce((e, a, u) => (e[a] = j[u], e), {}),
       valueExtent: [1 / 0, -1 / 0]
     },
     facets: {}
-  }, w = o.valueLabels ?? o.value, q = l.valueLabels ?? l.value, H = D.filter((e) => e.axis === "x").map((e) => e.valueColumn.value), J = D.filter((e) => e.axis === "y").map((e) => e.valueColumn.value), P = Object.values(N ?? {}).map((e) => e.value), Q = Object.values(X ?? {}).map((e) => e.value), W = v.uniq([...H, ...P, w]), Z = v.uniq([...J, ...Q, q]);
-  for (let e = 0; e < s.rowsCount; e++) {
-    const a = f.length ? f.map((n) => s.getColumnValue(n.value, e)).join("_") : "null", u = E.length ? E.map((n) => s.getColumnValue(n.value, e)).join("_") : "null", y = d.length ? d.map((n) => s.getColumnValue(n.value, e)).join("_") : "null", g = E.length ? E.map((n) => s.getColumnValue(n.valueLabels ?? n.value, e)).join(", ") : "", G = d.length ? d.map((n) => s.getColumnValue(n.valueLabels ?? n.value, e)).join(", ") : "";
-    t.meta.xGroupLabels[u] = g, t.meta.yGroupLabels[y] = G;
-    const i = String(s.getColumnValue(o.value, e)), r = String(s.getColumnValue(l.value, e)), p = s.getColumnValue(c.value, e) ?? A;
+  }, w = o.valueLabels ?? o.value, q = l.valueLabels ?? l.value, J = D.filter((e) => e.axis === "x").map((e) => e.valueColumn.value), P = D.filter((e) => e.axis === "y").map((e) => e.valueColumn.value), Q = Object.values(z ?? {}).map((e) => e.value), T = Object.values(X ?? {}).map((e) => e.value), U = v.uniq([...J, ...Q, w]), W = v.uniq([...P, ...T, q]);
+  for (let e = 0; e < n.rowsCount; e++) {
+    const a = f.length ? f.map((s) => n.getColumnValue(s.value, e)).join("_") : "null", u = d.length ? d.map((s) => n.getColumnValue(s.value, e)).join("_") : "null", y = b.length ? b.map((s) => n.getColumnValue(s.value, e)).join("_") : "null", K = d.length ? d.map((s) => n.getColumnValue(s.valueLabels ?? s.value, e)).join(", ") : "", G = b.length ? b.map((s) => n.getColumnValue(s.valueLabels ?? s.value, e)).join(", ") : "";
+    t.meta.xGroupLabels[u] = K, t.meta.yGroupLabels[y] = G;
+    const i = String(n.getColumnValue(o.value, e)), r = String(n.getColumnValue(l.value, e)), p = n.getColumnValue(c.value, e) ?? Y;
     if (i === "null" || r === "null" || p === null)
       continue;
     if (t.facets[a] || (t.facets[a] = {
@@ -65,22 +62,22 @@ function ie(s, o, l, c, f, E, d, D, N, X, L, A, x, Y, R) {
       cells: {}
     }), t.facets[a].xKeysByGroups[u] || (t.facets[a].xKeysByGroups[u] = []), t.facets[a].yKeysByGroups[y] || (t.facets[a].yKeysByGroups[y] = []), t.facets[a].xKeys.push(i), t.facets[a].yKeys.push(r), t.facets[a].xKeysByGroups[u].push(i), t.facets[a].yKeysByGroups[y].push(r), t.facets[a].cells[i] || (t.facets[a].cells[i] = {}), t.meta.valueExtent[0] = Math.min(p, t.meta.valueExtent[0]), t.meta.valueExtent[1] = Math.max(p, t.meta.valueExtent[1]), t.facets[a].cells[i][r] && t.facets[a].cells[i][r].value !== p)
       throw Error(`More than 1 value for x=${i}, y=${r}`);
-    const h = s.getColumnValue(w, e);
+    const h = n.getColumnValue(w, e);
     if (t.meta.xLabels[i] && String(h) !== t.meta.xLabels[i])
       throw Error(`More than 1 x-label value for x=${i}`);
-    const K = s.getColumnValue(q, e);
-    if (t.meta.yLabels[r] && String(K) !== t.meta.yLabels[r])
+    const g = n.getColumnValue(q, e);
+    if (t.meta.yLabels[r] && String(g) !== t.meta.yLabels[r])
       throw Error(`More than 1 y-label value for y=${r}`);
-    t.meta.xLabels[i] = String(h), t.meta.yLabels[r] = String(K), W.forEach((n) => {
-      const m = typeof t.meta.xDataByKeys[n] < "u", C = m && typeof t.meta.xDataByKeys[n][i] < "u";
-      if (m || (t.meta.xDataByKeys[n] = {}), C && t.meta.xDataByKeys[n][i] !== s.getColumnValue(n, e))
-        throw Error(`More than 1 value for x = ${i} and column = ${n}`);
-      C || (t.meta.xDataByKeys[n][i] = s.getColumnValue(n, e));
-    }), Z.forEach((n) => {
-      const m = typeof t.meta.yDataByKeys[n] < "u", C = m && typeof t.meta.yDataByKeys[n][r] < "u";
-      if (m || (t.meta.yDataByKeys[n] = {}), C && t.meta.yDataByKeys[n][r] !== s.getColumnValue(n, e))
-        throw Error(`More than 1 value for y = ${r} and column = ${n}`);
-      C || (t.meta.yDataByKeys[n][r] = s.getColumnValue(n, e));
+    t.meta.xLabels[i] = String(h), t.meta.yLabels[r] = String(g), U.forEach((s) => {
+      const m = typeof t.meta.xDataByKeys[s] < "u", V = m && typeof t.meta.xDataByKeys[s][i] < "u";
+      if (m || (t.meta.xDataByKeys[s] = {}), V && t.meta.xDataByKeys[s][i] !== n.getColumnValue(s, e))
+        throw Error(`More than 1 value for x = ${i} and column = ${s}`);
+      V || (t.meta.xDataByKeys[s][i] = n.getColumnValue(s, e));
+    }), W.forEach((s) => {
+      const m = typeof t.meta.yDataByKeys[s] < "u", V = m && typeof t.meta.yDataByKeys[s][r] < "u";
+      if (m || (t.meta.yDataByKeys[s] = {}), V && t.meta.yDataByKeys[s][r] !== n.getColumnValue(s, e))
+        throw Error(`More than 1 value for y = ${r} and column = ${s}`);
+      V || (t.meta.yDataByKeys[s][r] = n.getColumnValue(s, e));
     }), t.facets[a].cells[i][r] = {
       isCell: !0,
       idx: e,
@@ -93,55 +90,55 @@ function ie(s, o, l, c, f, E, d, D, N, X, L, A, x, Y, R) {
   }
   if (t.meta.facetKeys = t.meta.facetKeys.filter((e) => t.facets[e]), t.meta.facetKeys.forEach((e) => {
     const a = t.facets[e], u = v.uniq(a.xKeys), y = v.uniq(a.yKeys);
-    a.xKeys = x[o.value] ? v.intersection(x[o.value], u) : u, a.yKeys = x[l.value] ? v.intersection(x[l.value], y) : y, V.forEach((g) => {
-      t.facets[e].xKeysByGroups[g] = v.intersection(
+    a.xKeys = x[o.value] ? v.intersection(x[o.value], u) : u, a.yKeys = x[l.value] ? v.intersection(x[l.value], y) : y, E.forEach((K) => {
+      t.facets[e].xKeysByGroups[K] = v.intersection(
         a.xKeys,
-        t.facets[e].xKeysByGroups[g]
+        t.facets[e].xKeysByGroups[K]
       );
-    }), b.forEach((g) => {
-      t.facets[e].yKeysByGroups[g] = v.intersection(
+    }), L.forEach((K) => {
+      t.facets[e].yKeysByGroups[K] = v.intersection(
         a.yKeys,
-        t.facets[e].yKeysByGroups[g]
+        t.facets[e].yKeysByGroups[K]
       );
     });
-  }), L) {
+  }), C) {
     const e = [1 / 0, -1 / 0];
     t.meta.facetKeys.forEach((a) => {
-      const { xKeys: u, yKeys: y, cells: g } = t.facets[a], G = L.direction === "row" ? u : y, i = L.direction === "row" ? y : u, r = L.direction === "row" ? (p, h) => {
-        var K;
-        return (K = g[p]) == null ? void 0 : K[h];
+      const { xKeys: u, yKeys: y, cells: K } = t.facets[a], G = C.direction === "row" ? u : y, i = C.direction === "row" ? y : u, r = C.direction === "row" ? (p, h) => {
+        var g;
+        return (g = K[p]) == null ? void 0 : g[h];
       } : (p, h) => {
-        var K;
-        return (K = g[h]) == null ? void 0 : K[p];
+        var g;
+        return (g = K[h]) == null ? void 0 : g[p];
       };
       i.forEach((p) => {
         const h = [];
-        G.forEach((n) => {
-          var C;
-          const m = (C = r(n, p)) == null ? void 0 : C.value;
+        G.forEach((s) => {
+          var V;
+          const m = (V = r(s, p)) == null ? void 0 : V.value;
           m !== void 0 && h.push(m);
         });
-        const K = se(L.method, h);
-        G.forEach((n) => {
-          const m = r(n, p);
-          m !== void 0 && (m.normalizedValue = K(m.value), e[0] = Math.min(m.normalizedValue, e[0]), e[1] = Math.max(m.normalizedValue, e[1]));
+        const g = te(C.method, h);
+        G.forEach((s) => {
+          const m = r(s, p);
+          m !== void 0 && (m.normalizedValue = g(m.value), e[0] = Math.min(m.normalizedValue, e[0]), e[1] = Math.max(m.normalizedValue, e[1]));
         });
       });
     }), t.meta.valueExtent = e;
   }
-  return t.meta.xKeysByGroups = V.reduce((e, a) => {
-    const u = z(v.uniq(
+  return t.meta.xKeysByGroups = E.reduce((e, a) => {
+    const u = _(v.uniq(
       v.flatten(t.meta.facetKeys.map((y) => t.facets[y].xKeysByGroups[a]))
-    ), Y.sorting, t.meta.xLabels);
+    ), A.sorting, t.meta.xLabels);
     return e[a] = x[o.value] ? v.intersection(x[o.value], u) : u, e;
-  }, {}), t.meta.yKeysByGroups = b.reduce((e, a) => {
-    const u = z(v.uniq(
+  }, {}), t.meta.yKeysByGroups = L.reduce((e, a) => {
+    const u = _(v.uniq(
       v.flatten(t.meta.facetKeys.map((y) => t.facets[y].yKeysByGroups[a]))
-    ), R.sorting, t.meta.yLabels);
+    ), N.sorting, t.meta.yLabels);
     return e[a] = x[l.value] ? v.intersection(x[l.value], u) : u, e;
   }, {}), t.meta.valueExtent[0] === 1 / 0 && (t.meta.valueExtent[0] = 0), t.meta.valueExtent[1] === -1 / 0 && (t.meta.valueExtent[1] = 0), t;
 }
 export {
-  ie as getCells
+  le as getCells
 };
 //# sourceMappingURL=getCells.js.map

package/dist/heatmap/getCells.js.map

@@ -1 +1 @@
-{"version":3,"file":"getCells.js","sources":["../../src/heatmap/getCells.ts"],"sourcesContent":["import { deviation, extent, mean } from 'd3-array';\nimport lodash from 'lodash';\nimport type { DataFrame } from '../DataFrame';\nimport type { ColumnName, DataValue, NormalizationMethod } from '../types';\nimport type { HeatmapSettingsImpl } from './HeatmapSettingsImpl';\n\nconst MAX_RENDERED_CELLS_COUNT = 500000;\nfunction normalizeByStd(values:number[]) {\n    const stdValue = deviation(values);\n    const meanValue = mean(values);\n\n    if (stdValue === undefined || meanValue === undefined || stdValue === 0) {\n        return (v:number) => v;\n    }\n    return (v:number) => (v - meanValue) / stdValue;\n}\nfunction normalizeByMinMax(values:number[]) {\n    const meanValue = mean(values);\n    const [min, max] = extent(values);\n    if (meanValue === undefined || min === undefined || max === undefined || max === min) {\n        return (v:number) => v;\n    }\n    return (v:number) => (v - meanValue) / (max - min);\n}\n\nfunction getNormalizationFn(method:NormalizationMethod, values:number[]) {\n    if (method === 'standardScaling') {\n        return normalizeByStd(values);\n    }\n    if (method === 'meanNormalization') {\n        return normalizeByMinMax(values);\n    }\n    return (v:number) => v;\n}\n\nexport type Cell = {\n    isCell: true;\n    idx: number;\n    id: string;\n    value: DataValue;\n    normalizedValue: DataValue;\n    x: DataValue;\n    y: DataValue;\n};\n\nexport type GroupedCellsData = {\n    meta: {\n        facetKeys: string[];\n        xGroupKeys: string[];\n        yGroupKeys: string[];\n        xKeysByGroups: Record<string, string[]>;\n        yKeysByGroups: Record<string, string[]>;\n        // for titles, if facet by more 1 columns title has several values separated by commas\n        facetKeyValues: Record<string, string[]>;\n        xGroupKeyValues: Record<string, string[]>;\n        yGroupKeyValues: Record<string, string[]>;\n        xLabels: Record<string, string>;\n        yLabels: Record<string, string>;\n        xGroupLabels: Record<string, string>;\n        yGroupLabels: Record<string, string>;\n        valueExtent: [number, number]; // for color scales\n        // data for labels, annotations and dendrograms\n        xDataByKeys: Record<string, Record<string, DataValue>>;\n        yDataByKeys: Record<string, Record<string, DataValue>>;\n    };\n    //facet groups\n    facets: Record<\n        string,\n        {\n            // axis keys\n            xKeys: string[];\n            yKeys: string[];\n            // axis keys grouped by group keys from meta\n            xKeysByGroups: Record<string, string[]>;\n            yKeysByGroups: Record<string, string[]>;\n            // cells grouped by X, then by Y\n            cells: Record<string, Record<string, Cell>>;\n        }\n    >;\n};\n\n// all combinations with 1 key from each list\nfunction getKeysCombinations(keysLists: string[][]) {\n    if (!keysLists.length) {\n        return [];\n    }\n    let result: string[][] = [[]];\n    keysLists.forEach(keys => {\n        const nextResult: string[][] = [];\n        keys.forEach(key => {\n            nextResult.push(...result.map(resultItem => [...resultItem, key]));\n        });\n        result = nextResult;\n    });\n    return result;\n}\nconst sortByLabels = (arr: string[], direction: 'asc' | 'desc', labels: Record<string, string> = {}) => {\n    return arr.sort((a, b) => direction === 'asc'\n        ? (labels[a] ?? a).localeCompare((labels[b] ?? b), 'en', { numeric: true })\n        : (labels[b] ?? b).localeCompare((labels[a] ?? a), 'en', { numeric: true })\n    );\n};\n\nexport function getCells(\n    data: DataFrame,\n    xColumn: ColumnName,\n    yColumn: ColumnName,\n    valueColumn: ColumnName,\n    facetBy: ColumnName[],\n    xGroupBy: ColumnName[],\n    yGroupBy: ColumnName[],\n    annotations: HeatmapSettingsImpl['annotations'],\n    dendrogramX: HeatmapSettingsImpl['dendrogramX'],\n    dendrogramY: HeatmapSettingsImpl['dendrogramY'],\n    normalization: HeatmapSettingsImpl['normalization'],\n    NAValueAs: HeatmapSettingsImpl['NAValueAs'],\n    keysOrder: HeatmapSettingsImpl['keysOrder'],\n    xAxis: HeatmapSettingsImpl['chartSettings']['xAxis'],\n    yAxis: HeatmapSettingsImpl['chartSettings']['yAxis'],\n): GroupedCellsData {\n    const dataSize = data.columnNames.length ? data.getColumn(data.columnNames[0]).length : 0;\n    if (dataSize > MAX_RENDERED_CELLS_COUNT) {\n        console.error(`Too many cells for graph rendering (${dataSize})`);\n    }\n    const facetKeysLists = facetBy.length\n        ? facetBy.map(column => keysOrder[column.value] ?? data.getColumnCategories(column.value))\n        : [['null']];\n    const xGroupKeysLists = xGroupBy.length\n        ? xGroupBy.map(column => keysOrder[column.value] ?? data.getColumnCategories(column.value))\n        : [['null']];\n    const yGroupKeysLists = yGroupBy.length\n        ? yGroupBy.map(column => keysOrder[column.value] ?? data.getColumnCategories(column.value))\n        : [['null']];\n    const facetKeysCombinations = getKeysCombinations(facetKeysLists);\n    const xGroupKeysCombinations = getKeysCombinations(xGroupKeysLists);\n    const yGroupKeysCombinations = getKeysCombinations(yGroupKeysLists);\n\n    const facetKeys = facetKeysCombinations.map(keys => keys.join('_'));\n    const xGroupKeys = xGroupKeysCombinations.map(keys => keys.join('_'));\n    const yGroupKeys = yGroupKeysCombinations.map(keys => keys.join('_'));\n\n    const result: GroupedCellsData = {\n        meta: {\n            facetKeys,\n            xGroupKeys,\n            yGroupKeys,\n            xKeysByGroups: {},\n            yKeysByGroups: {},\n            xLabels: {},\n            yLabels: {},\n            xGroupLabels: {},\n            yGroupLabels: {},\n            xDataByKeys: {},\n            yDataByKeys: {},\n            facetKeyValues: facetKeys.reduce((res: Record<string, string[]>, key, index) => {\n                res[key] = facetKeysCombinations[index];\n                return res;\n            }, {}),\n            xGroupKeyValues: xGroupKeys.reduce((res: Record<string, string[]>, key, index) => {\n                res[key] = xGroupKeysCombinations[index];\n                return res;\n            }, {}),\n            yGroupKeyValues: yGroupKeys.reduce((res: Record<string, string[]>, key, index) => {\n                res[key] = yGroupKeysCombinations[index];\n                return res;\n            }, {}),\n            valueExtent: [Infinity, -Infinity],\n        },\n        facets: {},\n    };\n\n    const xLabelsSource = xColumn.valueLabels ?? xColumn.value;\n    const yLabelsSource = yColumn.valueLabels ?? yColumn.value;\n    const annotationColumnsX = annotations.filter(item => item.axis === 'x').map(item => item.valueColumn.value);\n    const annotationColumnsY = annotations.filter(item => item.axis === 'y').map(item => item.valueColumn.value);\n    const dendrogramXColumns = Object.values(dendrogramX ?? {}).map(column => column.value);\n    const dendrogramYColumns = Object.values(dendrogramY ?? {}).map(column => column.value);\n    const additionalDataColumnsX = lodash.uniq([...annotationColumnsX, ...dendrogramXColumns, xLabelsSource]);\n    const additionalDataColumnsY = lodash.uniq([...annotationColumnsY, ...dendrogramYColumns, yLabelsSource]);\n\n    for (let i = 0; i < data.rowsCount; i++) {\n        const facetKey = facetBy.length ? facetBy.map(column => data.getColumnValue(column.value, i)).join('_') : 'null';\n        const xGroupKey = xGroupBy.length ? xGroupBy.map(column => data.getColumnValue(column.value, i)).join('_') : 'null';\n        const yGroupKey = yGroupBy.length ? yGroupBy.map(column => data.getColumnValue(column.value, i)).join('_') : 'null';\n        const xGroupLabel = xGroupBy.length ? xGroupBy.map(column => data.getColumnValue(column.valueLabels ?? column.value, i)).join(', ') : '';\n        const yGroupLabel = yGroupBy.length ? yGroupBy.map(column => data.getColumnValue(column.valueLabels ?? column.value, i)).join(', ') : '';\n        result.meta.xGroupLabels[xGroupKey] = xGroupLabel;\n        result.meta.yGroupLabels[yGroupKey] = yGroupLabel;\n        const x = String(data.getColumnValue(xColumn.value, i));\n        const y = String(data.getColumnValue(yColumn.value, i));\n        const value = (data.getColumnValue(valueColumn.value, i) ?? NAValueAs) as number | null;\n        \n        if (x === 'null' || y === 'null' || value === null) {\n            continue;\n        }\n\n        if (!result.facets[facetKey]) {\n            result.facets[facetKey] = {\n                xKeys: [],\n                yKeys: [],\n                xKeysByGroups: {},\n                yKeysByGroups: {},\n                cells: {},\n            };\n        }\n        if (!result.facets[facetKey].xKeysByGroups[xGroupKey]) {\n            result.facets[facetKey].xKeysByGroups[xGroupKey] = [];\n        }\n        if (!result.facets[facetKey].yKeysByGroups[yGroupKey]) {\n            result.facets[facetKey].yKeysByGroups[yGroupKey] = [];\n        }\n        result.facets[facetKey].xKeys.push(x);\n        result.facets[facetKey].yKeys.push(y);\n        result.facets[facetKey].xKeysByGroups[xGroupKey].push(x);\n        result.facets[facetKey].yKeysByGroups[yGroupKey].push(y);\n\n        if (!result.facets[facetKey].cells[x]) {\n            result.facets[facetKey].cells[x] = {};\n        }\n        result.meta.valueExtent[0] = Math.min(value, result.meta.valueExtent[0]);\n        result.meta.valueExtent[1] = Math.max(value, result.meta.valueExtent[1]);\n        if (result.facets[facetKey].cells[x][y] && result.facets[facetKey].cells[x][y].value !== value) {\n            throw Error(`More than 1 value for x=${x}, y=${y}`);\n        }\n        const xLabelsSourceValue = data.getColumnValue(xLabelsSource, i);\n        if (result.meta.xLabels[x] && String(xLabelsSourceValue) !== result.meta.xLabels[x]) {\n            throw Error(`More than 1 x-label value for x=${x}`);\n        }\n        const yLabelsSourceValue = data.getColumnValue(yLabelsSource, i);\n        if (result.meta.yLabels[y] && String(yLabelsSourceValue) !== result.meta.yLabels[y]) {\n            throw Error(`More than 1 y-label value for y=${y}`);\n        }\n        result.meta.xLabels[x] = String(xLabelsSourceValue);\n        result.meta.yLabels[y] = String(yLabelsSourceValue);\n        // data for labels, annotations and dendrograms by X\n        additionalDataColumnsX.forEach(columnKey => {\n            const isAddedColumn = typeof result.meta.xDataByKeys[columnKey] !== 'undefined';\n            const isAddedValue = isAddedColumn && typeof result.meta.xDataByKeys[columnKey][x] !== 'undefined';\n            if (!isAddedColumn) {\n                result.meta.xDataByKeys[columnKey] = {};\n            }\n            if (isAddedValue && result.meta.xDataByKeys[columnKey][x] !== data.getColumnValue(columnKey, i)) {\n                throw Error(`More than 1 value for x = ${x} and column = ${columnKey}`);\n            }\n            if (!isAddedValue) {\n                result.meta.xDataByKeys[columnKey][x] = data.getColumnValue(columnKey, i);\n            }\n        });\n        // data for labels, annotations and dendrograms by Y\n        additionalDataColumnsY.forEach(columnKey => {\n            const isAddedColumn = typeof result.meta.yDataByKeys[columnKey] !== 'undefined';\n            const isAddedValue = isAddedColumn && typeof result.meta.yDataByKeys[columnKey][y] !== 'undefined';\n            if (!isAddedColumn) {\n                result.meta.yDataByKeys[columnKey] = {};\n            }\n            if (isAddedValue && result.meta.yDataByKeys[columnKey][y] !== data.getColumnValue(columnKey, i)) {\n                throw Error(`More than 1 value for y = ${y} and column = ${columnKey}`);\n            }\n            if (!isAddedValue) {\n                result.meta.yDataByKeys[columnKey][y] = data.getColumnValue(columnKey, i);\n            }\n        });\n        result.facets[facetKey].cells[x][y] = {\n            isCell: true,\n            idx: i,\n            id: `${x}_${y}`,\n            x,\n            y,\n            value,\n            normalizedValue: value,\n        };\n    }\n\n    result.meta.facetKeys = result.meta.facetKeys.filter((key) => result.facets[key]); // filter only used;\n\n    // make uniq x, y, x-group and y-group keys\n    result.meta.facetKeys.forEach(facetKey => {\n        const facet = result.facets[facetKey];\n        const uniqueXKeys = lodash.uniq(facet.xKeys);\n        const uniqueYKeys = lodash.uniq(facet.yKeys);\n        facet.xKeys = keysOrder[xColumn.value] ? lodash.intersection(keysOrder[xColumn.value], uniqueXKeys) : uniqueXKeys;\n        facet.yKeys = keysOrder[yColumn.value] ? lodash.intersection(keysOrder[yColumn.value], uniqueYKeys) : uniqueYKeys;\n        xGroupKeys.forEach(xGroupKey => {\n            result.facets[facetKey].xKeysByGroups[xGroupKey] = lodash.intersection(\n                facet.xKeys,\n                result.facets[facetKey].xKeysByGroups[xGroupKey]\n            );\n        });\n        yGroupKeys.forEach(yGroupKey => {\n            result.facets[facetKey].yKeysByGroups[yGroupKey] = lodash.intersection(\n                facet.yKeys,\n                result.facets[facetKey].yKeysByGroups[yGroupKey]\n            );\n        });\n    });\n\n    if (normalization) {\n        const valueExtent = [Infinity, -Infinity] as [number, number];\n        result.meta.facetKeys.forEach(facetKey => {\n            const {xKeys, yKeys, cells} = result.facets[facetKey];\n            const cellKeys = normalization.direction === 'row' ? xKeys : yKeys;\n            const groupKeys = normalization.direction === 'row' ? yKeys : xKeys;\n            const cellGetter = normalization.direction === 'row'\n                ? (cellKey:string, groupKey:string) => cells[cellKey]?.[groupKey]\n                : (cellKey:string, groupKey:string) => cells[groupKey]?.[cellKey];\n            groupKeys.forEach((groupKey) => {\n                const values:number[] = [];\n                cellKeys.forEach((cellKey) => {\n                    const v = cellGetter(cellKey, groupKey)?.value;\n                    if (v !== undefined) {\n                        values.push(v as number);\n                    }\n                });\n                const normalize = getNormalizationFn(normalization.method, values);\n                cellKeys.forEach((cellKey) => {\n                    const cell = cellGetter(cellKey, groupKey);\n                    if (cell !== undefined) {\n                        cell.normalizedValue = normalize(cell.value as number);\n                        valueExtent[0] = Math.min(cell.normalizedValue, valueExtent[0]);\n                        valueExtent[1] = Math.max(cell.normalizedValue, valueExtent[1]);\n                    }\n                });\n            });\n        });\n        result.meta.valueExtent = valueExtent;\n    }\n\n    // every facet may contain not all of available keys, but for shared axes it is necessary to have all of them\n    result.meta.xKeysByGroups = xGroupKeys.reduce((res: Record<string, string[]>, xGroupKey) => {\n        const existingXKeys = sortByLabels(lodash.uniq(\n            lodash.flatten(result.meta.facetKeys.map(facetKey => result.facets[facetKey].xKeysByGroups[xGroupKey]))\n        ), xAxis.sorting, result.meta.xLabels);\n        res[xGroupKey] = keysOrder[xColumn.value] ? lodash.intersection(keysOrder[xColumn.value], existingXKeys) : existingXKeys;\n        return res;\n    }, {});\n    result.meta.yKeysByGroups = yGroupKeys.reduce((res: Record<string, string[]>, yGroupKey) => {\n        const existingYKeys = sortByLabels(lodash.uniq(\n            lodash.flatten(result.meta.facetKeys.map(facetKey => result.facets[facetKey].yKeysByGroups[yGroupKey]))\n        ), yAxis.sorting, result.meta.yLabels);\n        res[yGroupKey] = keysOrder[yColumn.value] ? lodash.intersection(keysOrder[yColumn.value], existingYKeys) : existingYKeys;\n        return res;\n    }, {});\n\n    // avoid render errors on empty data\n    if (result.meta.valueExtent[0] === Infinity) {\n        result.meta.valueExtent[0] = 0;\n    }\n    if (result.meta.valueExtent[1] === -Infinity) {\n        result.meta.valueExtent[1] = 0;\n    }\n\n    return 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+{"version":3,"file":"getCells.js","sources":["../../src/heatmap/getCells.ts"],"sourcesContent":["import { deviation, extent, mean } from 'd3-array';\nimport lodash from 'lodash';\nimport type { DataFrame } from '../DataFrame';\nimport type { ColumnName, DataValue, NormalizationMethod } from '../types';\nimport type { HeatmapSettingsImpl } from './HeatmapSettingsImpl';\n\nfunction normalizeByStd(values:number[]) {\n    const stdValue = deviation(values);\n    const meanValue = mean(values);\n\n    if (stdValue === undefined || meanValue === undefined || stdValue === 0) {\n        return (v:number) => v;\n    }\n    return (v:number) => (v - meanValue) / stdValue;\n}\nfunction normalizeByMinMax(values:number[]) {\n    const meanValue = mean(values);\n    const [min, max] = extent(values);\n    if (meanValue === undefined || min === undefined || max === undefined || max === min) {\n        return (v:number) => v;\n    }\n    return (v:number) => (v - meanValue) / (max - min);\n}\n\nfunction getNormalizationFn(method:NormalizationMethod, values:number[]) {\n    if (method === 'standardScaling') {\n        return normalizeByStd(values);\n    }\n    if (method === 'meanNormalization') {\n        return normalizeByMinMax(values);\n    }\n    return (v:number) => v;\n}\n\nexport type Cell = {\n    isCell: true;\n    idx: number;\n    id: string;\n    value: DataValue;\n    normalizedValue: DataValue;\n    x: DataValue;\n    y: DataValue;\n};\n\nexport type GroupedCellsData = {\n    meta: {\n        facetKeys: string[];\n        xGroupKeys: string[];\n        yGroupKeys: string[];\n        xKeysByGroups: Record<string, string[]>;\n        yKeysByGroups: Record<string, string[]>;\n        // for titles, if facet by more 1 columns title has several values separated by commas\n        facetKeyValues: Record<string, string[]>;\n        xGroupKeyValues: Record<string, string[]>;\n        yGroupKeyValues: Record<string, string[]>;\n        xLabels: Record<string, string>;\n        yLabels: Record<string, string>;\n        xGroupLabels: Record<string, string>;\n        yGroupLabels: Record<string, string>;\n        valueExtent: [number, number]; // for color scales\n        // data for labels, annotations and dendrograms\n        xDataByKeys: Record<string, Record<string, DataValue>>;\n        yDataByKeys: Record<string, Record<string, DataValue>>;\n    };\n    //facet groups\n    facets: Record<\n        string,\n        {\n            // axis keys\n            xKeys: string[];\n            yKeys: string[];\n            // axis keys grouped by group keys from meta\n            xKeysByGroups: Record<string, string[]>;\n            yKeysByGroups: Record<string, string[]>;\n            // cells grouped by X, then by Y\n            cells: Record<string, Record<string, Cell>>;\n        }\n    >;\n};\n\n// all combinations with 1 key from each list\nfunction getKeysCombinations(keysLists: string[][]) {\n    if (!keysLists.length) {\n        return [];\n    }\n    let result: string[][] = [[]];\n    keysLists.forEach(keys => {\n        const nextResult: string[][] = [];\n        keys.forEach(key => {\n            nextResult.push(...result.map(resultItem => [...resultItem, key]));\n        });\n        result = nextResult;\n    });\n    return result;\n}\nconst sortByLabels = (arr: string[], direction: 'asc' | 'desc', labels: Record<string, string> = {}) => {\n    return arr.sort((a, b) => direction === 'asc'\n        ? (labels[a] ?? a).localeCompare((labels[b] ?? b), 'en', { numeric: true })\n        : (labels[b] ?? b).localeCompare((labels[a] ?? a), 'en', { numeric: true })\n    );\n};\n\nexport function getCells(\n    data: DataFrame,\n    xColumn: ColumnName,\n    yColumn: ColumnName,\n    valueColumn: ColumnName,\n    facetBy: ColumnName[],\n    xGroupBy: ColumnName[],\n    yGroupBy: ColumnName[],\n    annotations: HeatmapSettingsImpl['annotations'],\n    dendrogramX: HeatmapSettingsImpl['dendrogramX'],\n    dendrogramY: HeatmapSettingsImpl['dendrogramY'],\n    normalization: HeatmapSettingsImpl['normalization'],\n    NAValueAs: HeatmapSettingsImpl['NAValueAs'],\n    keysOrder: HeatmapSettingsImpl['keysOrder'],\n    xAxis: HeatmapSettingsImpl['chartSettings']['xAxis'],\n    yAxis: HeatmapSettingsImpl['chartSettings']['yAxis'],\n): GroupedCellsData {\n    const facetKeysLists = facetBy.length\n        ? facetBy.map(column => keysOrder[column.value] ?? data.getColumnCategories(column.value))\n        : [['null']];\n    const xGroupKeysLists = xGroupBy.length\n        ? xGroupBy.map(column => keysOrder[column.value] ?? data.getColumnCategories(column.value))\n        : [['null']];\n    const yGroupKeysLists = yGroupBy.length\n        ? yGroupBy.map(column => keysOrder[column.value] ?? data.getColumnCategories(column.value))\n        : [['null']];\n    const facetKeysCombinations = getKeysCombinations(facetKeysLists);\n    const xGroupKeysCombinations = getKeysCombinations(xGroupKeysLists);\n    const yGroupKeysCombinations = getKeysCombinations(yGroupKeysLists);\n\n    const facetKeys = facetKeysCombinations.map(keys => keys.join('_'));\n    const xGroupKeys = xGroupKeysCombinations.map(keys => keys.join('_'));\n    const yGroupKeys = yGroupKeysCombinations.map(keys => keys.join('_'));\n\n    const result: GroupedCellsData = {\n        meta: {\n            facetKeys,\n            xGroupKeys,\n            yGroupKeys,\n            xKeysByGroups: {},\n            yKeysByGroups: {},\n            xLabels: {},\n            yLabels: {},\n            xGroupLabels: {},\n            yGroupLabels: {},\n            xDataByKeys: {},\n            yDataByKeys: {},\n            facetKeyValues: facetKeys.reduce((res: Record<string, string[]>, key, index) => {\n                res[key] = facetKeysCombinations[index];\n                return res;\n            }, {}),\n            xGroupKeyValues: xGroupKeys.reduce((res: Record<string, string[]>, key, index) => {\n                res[key] = xGroupKeysCombinations[index];\n                return res;\n            }, {}),\n            yGroupKeyValues: yGroupKeys.reduce((res: Record<string, string[]>, key, index) => {\n                res[key] = yGroupKeysCombinations[index];\n                return res;\n            }, {}),\n            valueExtent: [Infinity, -Infinity],\n        },\n        facets: {},\n    };\n\n    const xLabelsSource = xColumn.valueLabels ?? xColumn.value;\n    const yLabelsSource = yColumn.valueLabels ?? yColumn.value;\n    const annotationColumnsX = annotations.filter(item => item.axis === 'x').map(item => item.valueColumn.value);\n    const annotationColumnsY = annotations.filter(item => item.axis === 'y').map(item => item.valueColumn.value);\n    const dendrogramXColumns = Object.values(dendrogramX ?? {}).map(column => column.value);\n    const dendrogramYColumns = Object.values(dendrogramY ?? {}).map(column => column.value);\n    const additionalDataColumnsX = lodash.uniq([...annotationColumnsX, ...dendrogramXColumns, xLabelsSource]);\n    const additionalDataColumnsY = lodash.uniq([...annotationColumnsY, ...dendrogramYColumns, yLabelsSource]);\n\n    for (let i = 0; i < data.rowsCount; i++) {\n        const facetKey = facetBy.length ? facetBy.map(column => data.getColumnValue(column.value, i)).join('_') : 'null';\n        const xGroupKey = xGroupBy.length ? xGroupBy.map(column => data.getColumnValue(column.value, i)).join('_') : 'null';\n        const yGroupKey = yGroupBy.length ? yGroupBy.map(column => data.getColumnValue(column.value, i)).join('_') : 'null';\n        const xGroupLabel = xGroupBy.length ? xGroupBy.map(column => data.getColumnValue(column.valueLabels ?? column.value, i)).join(', ') : '';\n        const yGroupLabel = yGroupBy.length ? yGroupBy.map(column => data.getColumnValue(column.valueLabels ?? column.value, i)).join(', ') : '';\n        result.meta.xGroupLabels[xGroupKey] = xGroupLabel;\n        result.meta.yGroupLabels[yGroupKey] = yGroupLabel;\n        const x = String(data.getColumnValue(xColumn.value, i));\n        const y = String(data.getColumnValue(yColumn.value, i));\n        const value = (data.getColumnValue(valueColumn.value, i) ?? NAValueAs) as number | null;\n        \n        if (x === 'null' || y === 'null' || value === null) {\n            continue;\n        }\n\n        if (!result.facets[facetKey]) {\n            result.facets[facetKey] = {\n                xKeys: [],\n                yKeys: [],\n                xKeysByGroups: {},\n                yKeysByGroups: {},\n                cells: {},\n            };\n        }\n        if (!result.facets[facetKey].xKeysByGroups[xGroupKey]) {\n            result.facets[facetKey].xKeysByGroups[xGroupKey] = [];\n        }\n        if (!result.facets[facetKey].yKeysByGroups[yGroupKey]) {\n            result.facets[facetKey].yKeysByGroups[yGroupKey] = [];\n        }\n        result.facets[facetKey].xKeys.push(x);\n        result.facets[facetKey].yKeys.push(y);\n        result.facets[facetKey].xKeysByGroups[xGroupKey].push(x);\n        result.facets[facetKey].yKeysByGroups[yGroupKey].push(y);\n\n        if (!result.facets[facetKey].cells[x]) {\n            result.facets[facetKey].cells[x] = {};\n        }\n        result.meta.valueExtent[0] = Math.min(value, result.meta.valueExtent[0]);\n        result.meta.valueExtent[1] = Math.max(value, result.meta.valueExtent[1]);\n        if (result.facets[facetKey].cells[x][y] && result.facets[facetKey].cells[x][y].value !== value) {\n            throw Error(`More than 1 value for x=${x}, y=${y}`);\n        }\n        const xLabelsSourceValue = data.getColumnValue(xLabelsSource, i);\n        if (result.meta.xLabels[x] && String(xLabelsSourceValue) !== result.meta.xLabels[x]) {\n            throw Error(`More than 1 x-label value for x=${x}`);\n        }\n        const yLabelsSourceValue = data.getColumnValue(yLabelsSource, i);\n        if (result.meta.yLabels[y] && String(yLabelsSourceValue) !== result.meta.yLabels[y]) {\n            throw Error(`More than 1 y-label value for y=${y}`);\n        }\n        result.meta.xLabels[x] = String(xLabelsSourceValue);\n        result.meta.yLabels[y] = String(yLabelsSourceValue);\n        // data for labels, annotations and dendrograms by X\n        additionalDataColumnsX.forEach(columnKey => {\n            const isAddedColumn = typeof result.meta.xDataByKeys[columnKey] !== 'undefined';\n            const isAddedValue = isAddedColumn && typeof result.meta.xDataByKeys[columnKey][x] !== 'undefined';\n            if (!isAddedColumn) {\n                result.meta.xDataByKeys[columnKey] = {};\n            }\n            if (isAddedValue && result.meta.xDataByKeys[columnKey][x] !== data.getColumnValue(columnKey, i)) {\n                throw Error(`More than 1 value for x = ${x} and column = ${columnKey}`);\n            }\n            if (!isAddedValue) {\n                result.meta.xDataByKeys[columnKey][x] = data.getColumnValue(columnKey, i);\n            }\n        });\n        // data for labels, annotations and dendrograms by Y\n        additionalDataColumnsY.forEach(columnKey => {\n            const isAddedColumn = typeof result.meta.yDataByKeys[columnKey] !== 'undefined';\n            const isAddedValue = isAddedColumn && typeof result.meta.yDataByKeys[columnKey][y] !== 'undefined';\n            if (!isAddedColumn) {\n                result.meta.yDataByKeys[columnKey] = {};\n            }\n            if (isAddedValue && result.meta.yDataByKeys[columnKey][y] !== data.getColumnValue(columnKey, i)) {\n                throw Error(`More than 1 value for y = ${y} and column = ${columnKey}`);\n            }\n            if (!isAddedValue) {\n                result.meta.yDataByKeys[columnKey][y] = data.getColumnValue(columnKey, i);\n            }\n        });\n        result.facets[facetKey].cells[x][y] = {\n            isCell: true,\n            idx: i,\n            id: `${x}_${y}`,\n            x,\n            y,\n            value,\n            normalizedValue: value,\n        };\n    }\n\n    result.meta.facetKeys = result.meta.facetKeys.filter((key) => result.facets[key]); // filter only used;\n\n    // make uniq x, y, x-group and y-group keys\n    result.meta.facetKeys.forEach(facetKey => {\n        const facet = result.facets[facetKey];\n        const uniqueXKeys = lodash.uniq(facet.xKeys);\n        const uniqueYKeys = lodash.uniq(facet.yKeys);\n        facet.xKeys = keysOrder[xColumn.value] ? lodash.intersection(keysOrder[xColumn.value], uniqueXKeys) : uniqueXKeys;\n        facet.yKeys = keysOrder[yColumn.value] ? lodash.intersection(keysOrder[yColumn.value], uniqueYKeys) : uniqueYKeys;\n        xGroupKeys.forEach(xGroupKey => {\n            result.facets[facetKey].xKeysByGroups[xGroupKey] = lodash.intersection(\n                facet.xKeys,\n                result.facets[facetKey].xKeysByGroups[xGroupKey]\n            );\n        });\n        yGroupKeys.forEach(yGroupKey => {\n            result.facets[facetKey].yKeysByGroups[yGroupKey] = lodash.intersection(\n                facet.yKeys,\n                result.facets[facetKey].yKeysByGroups[yGroupKey]\n            );\n        });\n    });\n\n    if (normalization) {\n        const valueExtent = [Infinity, -Infinity] as [number, number];\n        result.meta.facetKeys.forEach(facetKey => {\n            const {xKeys, yKeys, cells} = result.facets[facetKey];\n            const cellKeys = normalization.direction === 'row' ? 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package/dist/heatmap/getClusters.d.ts

@@ -1,9 +1,86 @@
 import { Cluster } from './components/types';
 import { DendrogramDistance, DendrogramLinkage } from '../types';
+/**
+ * Calculate squared Euclidean distance between two vectors
+ * This is faster than regular Euclidean distance since it avoids the square root
+ * Formula: Σ(p[i] - q[i])²
+ * @param p First vector
+ * @param q Second vector
+ * @returns Squared distance (always positive)
+ */
 export declare function squaredEuclidean(p: number[], q: number[]): number;
+/**
+ * Calculate Euclidean distance between two vectors
+ * This is the standard geometric distance in n-dimensional space
+ * Formula: √(Σ(p[i] - q[i])²)
+ * @param p First vector
+ * @param q Second vector
+ * @returns Euclidean distance
+ */
 export declare function euclidean(p: number[], q: number[]): number;
-export declare const averageLinkage: (setA: number[], setB: number[], distances: number[][]) => number;
-export declare const completeLinkage: (setA: number[], setB: number[], distances: number[][]) => number;
-export declare const singleLinkage: (setA: number[], setB: number[], distances: number[][]) => number;
-export declare function getClusters(dataKeys: string[] | undefined, dataValues: number[][], distanceType?: DendrogramDistance, linkageType?: DendrogramLinkage): Cluster;
+/**
+ * Average Linkage
+ * Calculates the average distance between all pairs of points in the two clusters
+ * This is the most commonly used linkage method as it balances between single and complete linkage
+ * @param setA Indexes of points in first cluster
+ * @param setB Indexes of points in second cluster
+ * @param getDistance Function to get distance between two point indexes
+ * @returns Average distance between clusters
+ */
+export declare const averageLinkage: (setA: number[], setB: number[], getDistance: (i: number, j: number) => number) => number;
+/**
+ * Complete Linkage (Maximum Linkage)
+ * Uses the maximum distance between any pair of points in the two clusters
+ * Tends to create compact, well-separated clusters
+ * Formula: max{d(a,b)} for all a in A, b in B
+ * @param setA Indexes of points in first cluster
+ * @param setB Indexes of points in second cluster
+ * @param getDistance Function to get distance between two point indexes
+ * @returns Maximum distance between clusters
+ */
+export declare const completeLinkage: (setA: number[], setB: number[], getDistance: (i: number, j: number) => number) => number;
+/**
+ * Single Linkage (Minimum Linkage)
+ * Uses the minimum distance between any pair of points in the two clusters
+ * Tends to create elongated, chain-like clusters
+ * Formula: min{d(a,b)} for all a in A, b in B
+ * @param setA Indexes of points in first cluster
+ * @param setB Indexes of points in second cluster
+ * @param getDistance Function to get distance between two point indexes
+ * @returns Minimum distance between clusters
+ */
+export declare const singleLinkage: (setA: number[], setB: number[], getDistance: (i: number, j: number) => number) => number;
+/**
+ * Extract indexes from a cluster hierarchy in the correct hierarchical order
+ * This function traverses the cluster tree and collects all indexes in the order
+ * they appear in the dendrogram (left-to-right traversal)
+ * @param cluster The root cluster to extract indexes from
+ * @returns Array of indexes in hierarchical order
+ */
+export declare function extractOrderedIndexes(cluster: Cluster): number[];
+export declare function getClustersApproximate(dataValues: number[][], distanceType?: DendrogramDistance, linkageType?: DendrogramLinkage): Cluster;
+/**
+ * Main hierarchical clustering function using agglomerative approach
+ *
+ * This implements the standard agglomerative hierarchical clustering algorithm:
+ * 1. Start with each point as its own cluster
+ * 2. Compute pairwise distances between all points
+ * 3. Iteratively merge the two closest clusters
+ * 4. Continue until only one cluster remains
+ *
+ * Algorithm complexity:
+ * - Time: O(n³) - for each of n-1 iterations, scan all n² cluster pairs
+ * - Space: O(n²) - store upper triangular distance matrix
+ *
+ * Memory optimization:
+ * - Uses upper triangular matrix storage (50% memory reduction)
+ * - Only stores distances where i < j since distance matrix is symmetric
+ *
+ * @param dataKeys Labels for each data point
+ * @param dataValues Feature vectors for each data point (n×d matrix)
+ * @param distanceType Distance metric to use between points
+ * @param linkageType Linkage method to use between clusters
+ * @returns Root cluster containing the complete hierarchy
+ */
+export declare function getClusters(dataValues: number[][], distanceType?: DendrogramDistance, linkageType?: DendrogramLinkage): Cluster;
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