@milaboratories/miplots4 1.0.143 → 1.0.145

package/dist/heatmap/getCells.js

@@ -1,37 +1,40 @@
 import v from "../node_modules/lodash/lodash.js";
-import J from "../node_modules/d3-array/src/deviation.js";
-import q from "../node_modules/d3-array/src/mean.js";
-import P from "../node_modules/d3-array/src/extent.js";
-const Q = 5e5;
-function W(s) {
-  const r = J(s), i = q(s);
-  return r === void 0 || i === void 0 || r === 0 ? (y) => y : (y) => (y - i) / r;
+import O from "../node_modules/d3-array/src/deviation.js";
+import I from "../node_modules/d3-array/src/mean.js";
+import k from "../node_modules/d3-array/src/extent.js";
+const ee = 5e5;
+function te(s) {
+  const o = O(s), l = I(s);
+  return o === void 0 || l === void 0 || o === 0 ? (c) => c : (c) => (c - l) / o;
 }
-function Z(s) {
-  const r = q(s), [i, y] = P(s);
-  return r === void 0 || i === void 0 || y === void 0 || y === i ? (m) => m : (m) => (m - r) / (y - i);
+function ae(s) {
+  const o = I(s), [l, c] = k(s);
+  return o === void 0 || l === void 0 || c === void 0 || c === l ? (f) => f : (f) => (f - o) / (c - l);
 }
-function k(s, r) {
-  return s === "standardScaling" ? W(r) : s === "meanNormalization" ? Z(r) : (i) => i;
+function se(s, o) {
+  return s === "standardScaling" ? te(o) : s === "meanNormalization" ? ae(o) : (l) => l;
 }
-function G(s) {
+function B(s) {
   if (!s.length)
     return [];
-  let r = [[]];
-  return s.forEach((i) => {
-    const y = [];
-    i.forEach((m) => {
-      y.push(...r.map((g) => [...g, m]));
-    }), r = y;
-  }), r;
+  let o = [[]];
+  return s.forEach((l) => {
+    const c = [];
+    l.forEach((f) => {
+      c.push(...o.map((E) => [...E, f]));
+    }), o = c;
+  }), o;
 }
-function ne(s, r, i, y, m, g, d, B, z, I, C, N) {
-  const D = s.columnNames.length ? s.getColumn(s.columnNames[0]).length : 0;
-  D > Q && console.error(`Too many cells for graph rendering (${D})`);
-  const A = m.length ? m.map((e) => s.getColumnCategories(e.value)) : [["null"]], X = g.length ? g.map((e) => s.getColumnCategories(e.value)) : [["null"]], O = d.length ? d.map((e) => s.getColumnCategories(e.value)) : [["null"]], S = G(A), M = G(X), $ = G(O), j = S.map((e) => e.join("_")), E = M.map((e) => e.join("_")), b = $.map((e) => e.join("_")), t = {
+const z = (s, o, l = {}) => s.sort(
+  (c, f) => o === "asc" ? (l[c] ?? c).localeCompare(l[f] ?? f, "en", { numeric: !0 }) : (l[f] ?? f).localeCompare(l[c] ?? c, "en", { numeric: !0 })
+);
+function ie(s, o, l, c, f, E, d, D, N, X, L, A, x, Y, R) {
+  const S = s.columnNames.length ? s.getColumn(s.columnNames[0]).length : 0;
+  S > ee && console.error(`Too many cells for graph rendering (${S})`);
+  const T = f.length ? f.map((e) => x[e.value] ?? s.getColumnCategories(e.value)) : [["null"]], F = E.length ? E.map((e) => x[e.value] ?? s.getColumnCategories(e.value)) : [["null"]], U = d.length ? d.map((e) => x[e.value] ?? s.getColumnCategories(e.value)) : [["null"]], M = B(T), $ = B(F), j = B(U), _ = M.map((e) => e.join("_")), V = $.map((e) => e.join("_")), b = j.map((e) => e.join("_")), t = {
     meta: {
-      facetKeys: j,
-      xGroupKeys: E,
+      facetKeys: _,
+      xGroupKeys: V,
       yGroupKeys: b,
       xKeysByGroups: {},
       yKeysByGroups: {},
@@ -41,18 +44,18 @@ function ne(s, r, i, y, m, g, d, B, z, I, C, N) {
       yGroupLabels: {},
       xDataByKeys: {},
       yDataByKeys: {},
-      facetKeyValues: j.reduce((e, a, o) => (e[a] = S[o], e), {}),
-      xGroupKeyValues: E.reduce((e, a, o) => (e[a] = M[o], e), {}),
-      yGroupKeyValues: b.reduce((e, a, o) => (e[a] = $[o], e), {}),
+      facetKeyValues: _.reduce((e, a, u) => (e[a] = M[u], e), {}),
+      xGroupKeyValues: V.reduce((e, a, u) => (e[a] = $[u], e), {}),
+      yGroupKeyValues: b.reduce((e, a, u) => (e[a] = j[u], e), {}),
       valueExtent: [1 / 0, -1 / 0]
     },
     facets: {}
-  }, _ = r.valueLabels ?? r.value, w = i.valueLabels ?? i.value, R = B.filter((e) => e.axis === "x").map((e) => e.valueColumn.value), Y = B.filter((e) => e.axis === "y").map((e) => e.valueColumn.value), T = Object.values(z ?? {}).map((e) => e.value), F = Object.values(I ?? {}).map((e) => e.value), U = v.uniq([...R, ...T, _]), H = v.uniq([...Y, ...F, w]);
+  }, w = o.valueLabels ?? o.value, q = l.valueLabels ?? l.value, H = D.filter((e) => e.axis === "x").map((e) => e.valueColumn.value), J = D.filter((e) => e.axis === "y").map((e) => e.valueColumn.value), P = Object.values(N ?? {}).map((e) => e.value), Q = Object.values(X ?? {}).map((e) => e.value), W = v.uniq([...H, ...P, w]), Z = v.uniq([...J, ...Q, q]);
   for (let e = 0; e < s.rowsCount; e++) {
-    const a = m.length ? m.map((n) => s.getColumnValue(n.value, e)).join("_") : "null", o = g.length ? g.map((n) => s.getColumnValue(n.value, e)).join("_") : "null", K = d.length ? d.map((n) => s.getColumnValue(n.value, e)).join("_") : "null", V = g.length ? g.map((n) => s.getColumnValue(n.valueLabels ?? n.value, e)).join(", ") : "", L = d.length ? d.map((n) => s.getColumnValue(n.valueLabels ?? n.value, e)).join(", ") : "";
-    t.meta.xGroupLabels[o] = V, t.meta.yGroupLabels[K] = L;
-    const l = String(s.getColumnValue(r.value, e)), u = String(s.getColumnValue(i.value, e)), f = s.getColumnValue(y.value, e) ?? N;
-    if (l === "null" || u === "null" || f === null)
+    const a = f.length ? f.map((n) => s.getColumnValue(n.value, e)).join("_") : "null", u = E.length ? E.map((n) => s.getColumnValue(n.value, e)).join("_") : "null", y = d.length ? d.map((n) => s.getColumnValue(n.value, e)).join("_") : "null", g = E.length ? E.map((n) => s.getColumnValue(n.valueLabels ?? n.value, e)).join(", ") : "", G = d.length ? d.map((n) => s.getColumnValue(n.valueLabels ?? n.value, e)).join(", ") : "";
+    t.meta.xGroupLabels[u] = g, t.meta.yGroupLabels[y] = G;
+    const i = String(s.getColumnValue(o.value, e)), r = String(s.getColumnValue(l.value, e)), p = s.getColumnValue(c.value, e) ?? A;
+    if (i === "null" || r === "null" || p === null)
       continue;
     if (t.facets[a] || (t.facets[a] = {
       xKeys: [],
@@ -60,77 +63,85 @@ function ne(s, r, i, y, m, g, d, B, z, I, C, N) {
       xKeysByGroups: {},
       yKeysByGroups: {},
       cells: {}
-    }), t.facets[a].xKeysByGroups[o] || (t.facets[a].xKeysByGroups[o] = []), t.facets[a].yKeysByGroups[K] || (t.facets[a].yKeysByGroups[K] = []), t.facets[a].xKeys.push(l), t.facets[a].yKeys.push(u), t.facets[a].xKeysByGroups[o].push(l), t.facets[a].yKeysByGroups[K].push(u), t.facets[a].cells[l] || (t.facets[a].cells[l] = {}), t.meta.valueExtent[0] = Math.min(f, t.meta.valueExtent[0]), t.meta.valueExtent[1] = Math.max(f, t.meta.valueExtent[1]), t.facets[a].cells[l][u] && t.facets[a].cells[l][u].value !== f)
-      throw Error(`More than 1 value for x=${l}, y=${u}`);
-    const x = s.getColumnValue(_, e);
-    if (t.meta.xLabels[l] && String(x) !== t.meta.xLabels[l])
-      throw Error(`More than 1 x-label value for x=${l}`);
-    const p = s.getColumnValue(w, e);
-    if (t.meta.yLabels[u] && String(p) !== t.meta.yLabels[u])
-      throw Error(`More than 1 y-label value for y=${u}`);
-    t.meta.xLabels[l] = String(x), t.meta.yLabels[u] = String(p), U.forEach((n) => {
-      const c = typeof t.meta.xDataByKeys[n] < "u", h = c && typeof t.meta.xDataByKeys[n][l] < "u";
-      if (c || (t.meta.xDataByKeys[n] = {}), h && t.meta.xDataByKeys[n][l] !== s.getColumnValue(n, e))
-        throw Error(`More than 1 value for x = ${l} and column = ${n}`);
-      h || (t.meta.xDataByKeys[n][l] = s.getColumnValue(n, e));
-    }), H.forEach((n) => {
-      const c = typeof t.meta.yDataByKeys[n] < "u", h = c && typeof t.meta.yDataByKeys[n][u] < "u";
-      if (c || (t.meta.yDataByKeys[n] = {}), h && t.meta.yDataByKeys[n][u] !== s.getColumnValue(n, e))
-        throw Error(`More than 1 value for y = ${u} and column = ${n}`);
-      h || (t.meta.yDataByKeys[n][u] = s.getColumnValue(n, e));
-    }), t.facets[a].cells[l][u] = {
+    }), t.facets[a].xKeysByGroups[u] || (t.facets[a].xKeysByGroups[u] = []), t.facets[a].yKeysByGroups[y] || (t.facets[a].yKeysByGroups[y] = []), t.facets[a].xKeys.push(i), t.facets[a].yKeys.push(r), t.facets[a].xKeysByGroups[u].push(i), t.facets[a].yKeysByGroups[y].push(r), t.facets[a].cells[i] || (t.facets[a].cells[i] = {}), t.meta.valueExtent[0] = Math.min(p, t.meta.valueExtent[0]), t.meta.valueExtent[1] = Math.max(p, t.meta.valueExtent[1]), t.facets[a].cells[i][r] && t.facets[a].cells[i][r].value !== p)
+      throw Error(`More than 1 value for x=${i}, y=${r}`);
+    const h = s.getColumnValue(w, e);
+    if (t.meta.xLabels[i] && String(h) !== t.meta.xLabels[i])
+      throw Error(`More than 1 x-label value for x=${i}`);
+    const K = s.getColumnValue(q, e);
+    if (t.meta.yLabels[r] && String(K) !== t.meta.yLabels[r])
+      throw Error(`More than 1 y-label value for y=${r}`);
+    t.meta.xLabels[i] = String(h), t.meta.yLabels[r] = String(K), W.forEach((n) => {
+      const m = typeof t.meta.xDataByKeys[n] < "u", C = m && typeof t.meta.xDataByKeys[n][i] < "u";
+      if (m || (t.meta.xDataByKeys[n] = {}), C && t.meta.xDataByKeys[n][i] !== s.getColumnValue(n, e))
+        throw Error(`More than 1 value for x = ${i} and column = ${n}`);
+      C || (t.meta.xDataByKeys[n][i] = s.getColumnValue(n, e));
+    }), Z.forEach((n) => {
+      const m = typeof t.meta.yDataByKeys[n] < "u", C = m && typeof t.meta.yDataByKeys[n][r] < "u";
+      if (m || (t.meta.yDataByKeys[n] = {}), C && t.meta.yDataByKeys[n][r] !== s.getColumnValue(n, e))
+        throw Error(`More than 1 value for y = ${r} and column = ${n}`);
+      C || (t.meta.yDataByKeys[n][r] = s.getColumnValue(n, e));
+    }), t.facets[a].cells[i][r] = {
       isCell: !0,
       idx: e,
-      id: `${l}_${u}`,
-      x: l,
-      y: u,
-      value: f,
-      normalizedValue: f
+      id: `${i}_${r}`,
+      x: i,
+      y: r,
+      value: p,
+      normalizedValue: p
     };
   }
   if (t.meta.facetKeys = t.meta.facetKeys.filter((e) => t.facets[e]), t.meta.facetKeys.forEach((e) => {
-    const a = t.facets[e];
-    a.xKeys = v.uniq(a.xKeys), a.yKeys = v.uniq(a.yKeys), E.forEach((o) => {
-      t.facets[e].xKeysByGroups[o] = v.uniq(
-        t.facets[e].xKeysByGroups[o]
+    const a = t.facets[e], u = v.uniq(a.xKeys), y = v.uniq(a.yKeys);
+    a.xKeys = x[o.value] ? v.intersection(x[o.value], u) : u, a.yKeys = x[l.value] ? v.intersection(x[l.value], y) : y, V.forEach((g) => {
+      t.facets[e].xKeysByGroups[g] = v.intersection(
+        a.xKeys,
+        t.facets[e].xKeysByGroups[g]
       );
-    }), b.forEach((o) => {
-      t.facets[e].yKeysByGroups[o] = v.uniq(
-        t.facets[e].yKeysByGroups[o]
+    }), b.forEach((g) => {
+      t.facets[e].yKeysByGroups[g] = v.intersection(
+        a.yKeys,
+        t.facets[e].yKeysByGroups[g]
       );
     });
-  }), C) {
+  }), L) {
     const e = [1 / 0, -1 / 0];
     t.meta.facetKeys.forEach((a) => {
-      const { xKeys: o, yKeys: K, cells: V } = t.facets[a], L = C.direction === "row" ? o : K, l = C.direction === "row" ? K : o, u = C.direction === "row" ? (f, x) => {
-        var p;
-        return (p = V[f]) == null ? void 0 : p[x];
-      } : (f, x) => {
-        var p;
-        return (p = V[x]) == null ? void 0 : p[f];
+      const { xKeys: u, yKeys: y, cells: g } = t.facets[a], G = L.direction === "row" ? u : y, i = L.direction === "row" ? y : u, r = L.direction === "row" ? (p, h) => {
+        var K;
+        return (K = g[p]) == null ? void 0 : K[h];
+      } : (p, h) => {
+        var K;
+        return (K = g[h]) == null ? void 0 : K[p];
       };
-      l.forEach((f) => {
-        const x = [];
-        L.forEach((n) => {
-          var h;
-          const c = (h = u(n, f)) == null ? void 0 : h.value;
-          c !== void 0 && x.push(c);
+      i.forEach((p) => {
+        const h = [];
+        G.forEach((n) => {
+          var C;
+          const m = (C = r(n, p)) == null ? void 0 : C.value;
+          m !== void 0 && h.push(m);
         });
-        const p = k(C.method, x);
-        L.forEach((n) => {
-          const c = u(n, f);
-          c !== void 0 && (c.normalizedValue = p(c.value), e[0] = Math.min(c.normalizedValue, e[0]), e[1] = Math.max(c.normalizedValue, e[1]));
+        const K = se(L.method, h);
+        G.forEach((n) => {
+          const m = r(n, p);
+          m !== void 0 && (m.normalizedValue = K(m.value), e[0] = Math.min(m.normalizedValue, e[0]), e[1] = Math.max(m.normalizedValue, e[1]));
         });
       });
     }), t.meta.valueExtent = e;
   }
-  return t.meta.xKeysByGroups = E.reduce((e, a) => (e[a] = v.uniq(
-    v.flatten(t.meta.facetKeys.map((o) => t.facets[o].xKeysByGroups[a]))
-  ), e), {}), t.meta.yKeysByGroups = b.reduce((e, a) => (e[a] = v.uniq(
-    v.flatten(t.meta.facetKeys.map((o) => t.facets[o].yKeysByGroups[a]))
-  ), e), {}), t.meta.valueExtent[0] === 1 / 0 && (t.meta.valueExtent[0] = 0), t.meta.valueExtent[1] === -1 / 0 && (t.meta.valueExtent[1] = 0), t;
+  return t.meta.xKeysByGroups = V.reduce((e, a) => {
+    const u = z(v.uniq(
+      v.flatten(t.meta.facetKeys.map((y) => t.facets[y].xKeysByGroups[a]))
+    ), Y.sorting, t.meta.xLabels);
+    return e[a] = x[o.value] ? v.intersection(x[o.value], u) : u, e;
+  }, {}), t.meta.yKeysByGroups = b.reduce((e, a) => {
+    const u = z(v.uniq(
+      v.flatten(t.meta.facetKeys.map((y) => t.facets[y].yKeysByGroups[a]))
+    ), R.sorting, t.meta.yLabels);
+    return e[a] = x[l.value] ? v.intersection(x[l.value], u) : u, e;
+  }, {}), t.meta.valueExtent[0] === 1 / 0 && (t.meta.valueExtent[0] = 0), t.meta.valueExtent[1] === -1 / 0 && (t.meta.valueExtent[1] = 0), t;
 }
 export {
-  ne as getCells
+  ie as getCells
 };
 //# sourceMappingURL=getCells.js.map

package/dist/heatmap/getCells.js.map

@@ -1 +1 @@
-{"version":3,"file":"getCells.js","sources":["../../src/heatmap/getCells.ts"],"sourcesContent":["import { deviation, extent, mean } from 'd3-array';\nimport lodash from 'lodash';\nimport type { DataFrame } from '../DataFrame';\nimport type { ColumnName, DataValue, NormalizationMethod } from '../types';\nimport type { HeatmapSettingsImpl } from './HeatmapSettingsImpl';\n\nconst MAX_RENDERED_CELLS_COUNT = 500000;\nfunction normalizeByStd(values:number[]) {\n    const stdValue = deviation(values);\n    const meanValue = mean(values);\n\n    if (stdValue === undefined || meanValue === undefined || stdValue === 0) {\n        return (v:number) => v;\n    }\n    return (v:number) => (v - meanValue) / stdValue;\n}\nfunction normalizeByMinMax(values:number[]) {\n    const meanValue = mean(values);\n    const [min, max] = extent(values);\n    if (meanValue === undefined || min === undefined || max === undefined || max === min) {\n        return (v:number) => v;\n    }\n    return (v:number) => (v - meanValue) / (max - min);\n}\n\nfunction getNormalizationFn(method:NormalizationMethod, values:number[]) {\n    if (method === 'standardScaling') {\n        return normalizeByStd(values);\n    }\n    if (method === 'meanNormalization') {\n        return normalizeByMinMax(values);\n    }\n    return (v:number) => v;\n}\n\nexport type Cell = {\n    isCell: true;\n    idx: number;\n    id: string;\n    value: DataValue;\n    normalizedValue: DataValue;\n    x: DataValue;\n    y: DataValue;\n};\n\nexport type GroupedCellsData = {\n    meta: {\n        facetKeys: string[];\n        xGroupKeys: string[];\n        yGroupKeys: string[];\n        xKeysByGroups: Record<string, string[]>;\n        yKeysByGroups: Record<string, string[]>;\n        // for titles, if facet by more 1 columns title has several values separated by commas\n        facetKeyValues: Record<string, string[]>;\n        xGroupKeyValues: Record<string, string[]>;\n        yGroupKeyValues: Record<string, string[]>;\n        xLabels: Record<string, string>;\n        yLabels: Record<string, string>;\n        xGroupLabels: Record<string, string>;\n        yGroupLabels: Record<string, string>;\n        valueExtent: [number, number]; // for color scales\n        // data for labels, annotations and dendrograms\n        xDataByKeys: Record<string, Record<string, DataValue>>;\n        yDataByKeys: Record<string, Record<string, DataValue>>;\n    };\n    //facet groups\n    facets: Record<\n        string,\n        {\n            // axis keys\n            xKeys: string[];\n            yKeys: string[];\n            // axis keys grouped by group keys from meta\n            xKeysByGroups: Record<string, string[]>;\n            yKeysByGroups: Record<string, string[]>;\n            // cells grouped by X, then by Y\n            cells: Record<string, Record<string, Cell>>;\n        }\n    >;\n};\n\n// all combinations with 1 key from each list\nfunction getKeysCombinations(keysLists: string[][]) {\n    if (!keysLists.length) {\n        return [];\n    }\n    let result: string[][] = [[]];\n    keysLists.forEach(keys => {\n        const nextResult: string[][] = [];\n        keys.forEach(key => {\n            nextResult.push(...result.map(resultItem => [...resultItem, key]));\n        });\n        result = nextResult;\n    });\n    return result;\n}\n\nexport function getCells(\n    data: DataFrame,\n    xColumn: ColumnName,\n    yColumn: ColumnName,\n    valueColumn: ColumnName,\n    facetBy: ColumnName[],\n    xGroupBy: ColumnName[],\n    yGroupBy: ColumnName[],\n    annotations: HeatmapSettingsImpl['annotations'],\n    dendrogramX: HeatmapSettingsImpl['dendrogramX'],\n    dendrogramY: HeatmapSettingsImpl['dendrogramY'],\n    normalization: HeatmapSettingsImpl['normalization'],\n    NAValueAs: HeatmapSettingsImpl['NAValueAs'],\n): GroupedCellsData {\n    const dataSize = data.columnNames.length ? data.getColumn(data.columnNames[0]).length : 0;\n    if (dataSize > MAX_RENDERED_CELLS_COUNT) {\n        console.error(`Too many cells for graph rendering (${dataSize})`);\n    }\n    const facetKeysLists = facetBy.length\n        ? facetBy.map(column => data.getColumnCategories(column.value))\n        : [['null']];\n    const xGroupKeysLists = xGroupBy.length\n        ? xGroupBy.map(column => data.getColumnCategories(column.value))\n        : [['null']];\n    const yGroupKeysLists = yGroupBy.length\n        ? yGroupBy.map(column => data.getColumnCategories(column.value))\n        : [['null']];\n    const facetKeysCombinations = getKeysCombinations(facetKeysLists);\n    const xGroupKeysCombinations = getKeysCombinations(xGroupKeysLists);\n    const yGroupKeysCombinations = getKeysCombinations(yGroupKeysLists);\n\n    const facetKeys = facetKeysCombinations.map(keys => keys.join('_'));\n    const xGroupKeys = xGroupKeysCombinations.map(keys => keys.join('_'));\n    const yGroupKeys = yGroupKeysCombinations.map(keys => keys.join('_'));\n\n    const result: GroupedCellsData = {\n        meta: {\n            facetKeys,\n            xGroupKeys,\n            yGroupKeys,\n            xKeysByGroups: {},\n            yKeysByGroups: {},\n            xLabels: {},\n            yLabels: {},\n            xGroupLabels: {},\n            yGroupLabels: {},\n            xDataByKeys: {},\n            yDataByKeys: {},\n            facetKeyValues: facetKeys.reduce((res: Record<string, string[]>, key, index) => {\n                res[key] = facetKeysCombinations[index];\n                return res;\n            }, {}),\n            xGroupKeyValues: xGroupKeys.reduce((res: Record<string, string[]>, key, index) => {\n                res[key] = xGroupKeysCombinations[index];\n                return res;\n            }, {}),\n            yGroupKeyValues: yGroupKeys.reduce((res: Record<string, string[]>, key, index) => {\n                res[key] = yGroupKeysCombinations[index];\n                return res;\n            }, {}),\n            valueExtent: [Infinity, -Infinity],\n        },\n        facets: {},\n    };\n\n    const xLabelsSource = xColumn.valueLabels ?? xColumn.value;\n    const yLabelsSource = yColumn.valueLabels ?? yColumn.value;\n    const annotationColumnsX = annotations.filter(item => item.axis === 'x').map(item => item.valueColumn.value);\n    const annotationColumnsY = annotations.filter(item => item.axis === 'y').map(item => item.valueColumn.value);\n    const dendrogramXColumns = Object.values(dendrogramX ?? {}).map(column => column.value);\n    const dendrogramYColumns = Object.values(dendrogramY ?? {}).map(column => column.value);\n    const additionalDataColumnsX = lodash.uniq([...annotationColumnsX, ...dendrogramXColumns, xLabelsSource]);\n    const additionalDataColumnsY = lodash.uniq([...annotationColumnsY, ...dendrogramYColumns, yLabelsSource]);\n\n    for (let i = 0; i < data.rowsCount; i++) {\n        const facetKey = facetBy.length ? facetBy.map(column => data.getColumnValue(column.value, i)).join('_') : 'null';\n        const xGroupKey = xGroupBy.length ? xGroupBy.map(column => data.getColumnValue(column.value, i)).join('_') : 'null';\n        const yGroupKey = yGroupBy.length ? yGroupBy.map(column => data.getColumnValue(column.value, i)).join('_') : 'null';\n        const xGroupLabel = xGroupBy.length ? xGroupBy.map(column => data.getColumnValue(column.valueLabels ?? column.value, i)).join(', ') : '';\n        const yGroupLabel = yGroupBy.length ? yGroupBy.map(column => data.getColumnValue(column.valueLabels ?? column.value, i)).join(', ') : '';\n        result.meta.xGroupLabels[xGroupKey] = xGroupLabel;\n        result.meta.yGroupLabels[yGroupKey] = yGroupLabel;\n        const x = String(data.getColumnValue(xColumn.value, i));\n        const y = String(data.getColumnValue(yColumn.value, i));\n        const value = (data.getColumnValue(valueColumn.value, i) ?? NAValueAs) as number | null;\n        \n        if (x === 'null' || y === 'null' || value === null) {\n            continue;\n        }\n\n        if (!result.facets[facetKey]) {\n            result.facets[facetKey] = {\n                xKeys: [],\n                yKeys: [],\n                xKeysByGroups: {},\n                yKeysByGroups: {},\n                cells: {},\n            };\n        }\n        if (!result.facets[facetKey].xKeysByGroups[xGroupKey]) {\n            result.facets[facetKey].xKeysByGroups[xGroupKey] = [];\n        }\n        if (!result.facets[facetKey].yKeysByGroups[yGroupKey]) {\n            result.facets[facetKey].yKeysByGroups[yGroupKey] = [];\n        }\n        result.facets[facetKey].xKeys.push(x);\n        result.facets[facetKey].yKeys.push(y);\n        result.facets[facetKey].xKeysByGroups[xGroupKey].push(x);\n        result.facets[facetKey].yKeysByGroups[yGroupKey].push(y);\n\n        if (!result.facets[facetKey].cells[x]) {\n            result.facets[facetKey].cells[x] = {};\n        }\n        result.meta.valueExtent[0] = Math.min(value, result.meta.valueExtent[0]);\n        result.meta.valueExtent[1] = Math.max(value, result.meta.valueExtent[1]);\n        if (result.facets[facetKey].cells[x][y] && result.facets[facetKey].cells[x][y].value !== value) {\n            throw Error(`More than 1 value for x=${x}, y=${y}`);\n        }\n        const xLabelsSourceValue = data.getColumnValue(xLabelsSource, i);\n        if (result.meta.xLabels[x] && String(xLabelsSourceValue) !== result.meta.xLabels[x]) {\n            throw Error(`More than 1 x-label value for x=${x}`);\n        }\n        const yLabelsSourceValue = data.getColumnValue(yLabelsSource, i);\n        if (result.meta.yLabels[y] && String(yLabelsSourceValue) !== result.meta.yLabels[y]) {\n            throw Error(`More than 1 y-label value for y=${y}`);\n        }\n        result.meta.xLabels[x] = String(xLabelsSourceValue);\n        result.meta.yLabels[y] = String(yLabelsSourceValue);\n        // data for labels, annotations and dendrograms by X\n        additionalDataColumnsX.forEach(columnKey => {\n            const isAddedColumn = typeof result.meta.xDataByKeys[columnKey] !== 'undefined';\n            const isAddedValue = isAddedColumn && typeof result.meta.xDataByKeys[columnKey][x] !== 'undefined';\n            if (!isAddedColumn) {\n                result.meta.xDataByKeys[columnKey] = {};\n            }\n            if (isAddedValue && result.meta.xDataByKeys[columnKey][x] !== data.getColumnValue(columnKey, i)) {\n                throw Error(`More than 1 value for x = ${x} and column = ${columnKey}`);\n            }\n            if (!isAddedValue) {\n                result.meta.xDataByKeys[columnKey][x] = data.getColumnValue(columnKey, i);\n            }\n        });\n        // data for labels, annotations and dendrograms by Y\n        additionalDataColumnsY.forEach(columnKey => {\n            const isAddedColumn = typeof result.meta.yDataByKeys[columnKey] !== 'undefined';\n            const isAddedValue = isAddedColumn && typeof result.meta.yDataByKeys[columnKey][y] !== 'undefined';\n            if (!isAddedColumn) {\n                result.meta.yDataByKeys[columnKey] = {};\n            }\n            if (isAddedValue && result.meta.yDataByKeys[columnKey][y] !== data.getColumnValue(columnKey, i)) {\n                throw Error(`More than 1 value for y = ${y} and column = ${columnKey}`);\n            }\n            if (!isAddedValue) {\n                result.meta.yDataByKeys[columnKey][y] = data.getColumnValue(columnKey, i);\n            }\n        });\n        result.facets[facetKey].cells[x][y] = {\n            isCell: true,\n            idx: i,\n            id: `${x}_${y}`,\n            x,\n            y,\n            value,\n            normalizedValue: value,\n        };\n    }\n\n    result.meta.facetKeys = result.meta.facetKeys.filter((key) => result.facets[key]); // filter only used;\n\n    // make uniq x, y, x-group and y-group keys\n    result.meta.facetKeys.forEach(facetKey => {\n        const facet = result.facets[facetKey];\n        facet.xKeys = lodash.uniq(facet.xKeys);\n        facet.yKeys = lodash.uniq(facet.yKeys);\n        xGroupKeys.forEach(xGroupKey => {\n            result.facets[facetKey].xKeysByGroups[xGroupKey] = lodash.uniq(\n                result.facets[facetKey].xKeysByGroups[xGroupKey]\n            );\n        });\n        yGroupKeys.forEach(yGroupKey => {\n            result.facets[facetKey].yKeysByGroups[yGroupKey] = lodash.uniq(\n                result.facets[facetKey].yKeysByGroups[yGroupKey]\n            );\n        });\n    });\n\n    if (normalization) {\n        const valueExtent = [Infinity, -Infinity] as [number, number];\n        result.meta.facetKeys.forEach(facetKey => {\n            const {xKeys, yKeys, cells} = result.facets[facetKey];\n            const cellKeys = normalization.direction === 'row' ? xKeys : yKeys;\n            const groupKeys = normalization.direction === 'row' ? yKeys : xKeys;\n            const cellGetter = normalization.direction === 'row'\n                ? (cellKey:string, groupKey:string) => cells[cellKey]?.[groupKey]\n                : (cellKey:string, groupKey:string) => cells[groupKey]?.[cellKey];\n            groupKeys.forEach((groupKey) => {\n                const values:number[] = [];\n                cellKeys.forEach((cellKey) => {\n                    const v = cellGetter(cellKey, groupKey)?.value;\n                    if (v !== undefined) {\n                        values.push(v as number);\n                    }\n                });\n                const normalize = getNormalizationFn(normalization.method, values);\n                cellKeys.forEach((cellKey) => {\n                    const cell = cellGetter(cellKey, groupKey);\n                    if (cell !== undefined) {\n                        cell.normalizedValue = normalize(cell.value as number);\n                        valueExtent[0] = Math.min(cell.normalizedValue, valueExtent[0]);\n                        valueExtent[1] = Math.max(cell.normalizedValue, valueExtent[1]);\n                    }\n                });\n            });\n        });\n        result.meta.valueExtent = valueExtent;\n    }\n\n    // every facet may contain not all of available keys, but for shared axes it is necessary to have all of them\n    result.meta.xKeysByGroups = xGroupKeys.reduce((res: Record<string, string[]>, xGroupKey) => {\n        res[xGroupKey] = lodash.uniq(\n            lodash.flatten(result.meta.facetKeys.map(facetKey => result.facets[facetKey].xKeysByGroups[xGroupKey]))\n        );\n        return res;\n    }, {});\n    result.meta.yKeysByGroups = yGroupKeys.reduce((res: Record<string, string[]>, yGroupKey) => {\n        res[yGroupKey] = lodash.uniq(\n            lodash.flatten(result.meta.facetKeys.map(facetKey => result.facets[facetKey].yKeysByGroups[yGroupKey]))\n        );\n        return res;\n    }, {});\n\n    // avoid render errors on empty data\n    if (result.meta.valueExtent[0] === Infinity) {\n        result.meta.valueExtent[0] = 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+{"version":3,"file":"getCells.js","sources":["../../src/heatmap/getCells.ts"],"sourcesContent":["import { deviation, extent, mean } from 'd3-array';\nimport lodash from 'lodash';\nimport type { DataFrame } from '../DataFrame';\nimport type { ColumnName, DataValue, NormalizationMethod } from '../types';\nimport type { HeatmapSettingsImpl } from './HeatmapSettingsImpl';\n\nconst MAX_RENDERED_CELLS_COUNT = 500000;\nfunction normalizeByStd(values:number[]) {\n    const stdValue = deviation(values);\n    const meanValue = mean(values);\n\n    if (stdValue === undefined || meanValue === undefined || stdValue === 0) {\n        return (v:number) => v;\n    }\n    return (v:number) => (v - meanValue) / stdValue;\n}\nfunction normalizeByMinMax(values:number[]) {\n    const meanValue = mean(values);\n    const [min, max] = extent(values);\n    if (meanValue === undefined || min === undefined || max === undefined || max === min) {\n        return (v:number) => v;\n    }\n    return (v:number) => (v - meanValue) / (max - min);\n}\n\nfunction getNormalizationFn(method:NormalizationMethod, values:number[]) {\n    if (method === 'standardScaling') {\n        return normalizeByStd(values);\n    }\n    if (method === 'meanNormalization') {\n        return normalizeByMinMax(values);\n    }\n    return (v:number) => v;\n}\n\nexport type Cell = {\n    isCell: true;\n    idx: number;\n    id: string;\n    value: DataValue;\n    normalizedValue: DataValue;\n    x: DataValue;\n    y: DataValue;\n};\n\nexport type GroupedCellsData = {\n    meta: {\n        facetKeys: string[];\n        xGroupKeys: string[];\n        yGroupKeys: string[];\n        xKeysByGroups: Record<string, string[]>;\n        yKeysByGroups: Record<string, string[]>;\n        // for titles, if facet by more 1 columns title has several values separated by commas\n        facetKeyValues: Record<string, string[]>;\n        xGroupKeyValues: Record<string, string[]>;\n        yGroupKeyValues: Record<string, string[]>;\n        xLabels: Record<string, string>;\n        yLabels: Record<string, string>;\n        xGroupLabels: Record<string, string>;\n        yGroupLabels: Record<string, string>;\n        valueExtent: [number, number]; // for color scales\n        // data for labels, annotations and dendrograms\n        xDataByKeys: Record<string, Record<string, DataValue>>;\n        yDataByKeys: Record<string, Record<string, DataValue>>;\n    };\n    //facet groups\n    facets: Record<\n        string,\n        {\n            // axis keys\n            xKeys: string[];\n            yKeys: string[];\n            // axis keys grouped by group keys from meta\n            xKeysByGroups: Record<string, string[]>;\n            yKeysByGroups: Record<string, string[]>;\n            // cells grouped by X, then by Y\n            cells: Record<string, Record<string, Cell>>;\n        }\n    >;\n};\n\n// all combinations with 1 key from each list\nfunction getKeysCombinations(keysLists: string[][]) {\n    if (!keysLists.length) {\n        return [];\n    }\n    let result: string[][] = [[]];\n    keysLists.forEach(keys => {\n        const nextResult: string[][] = [];\n        keys.forEach(key => {\n            nextResult.push(...result.map(resultItem => [...resultItem, key]));\n        });\n        result = nextResult;\n    });\n    return result;\n}\nconst sortByLabels = (arr: string[], direction: 'asc' | 'desc', labels: Record<string, string> = {}) => {\n    return arr.sort((a, b) => direction === 'asc'\n        ? (labels[a] ?? a).localeCompare((labels[b] ?? b), 'en', { numeric: true })\n        : (labels[b] ?? b).localeCompare((labels[a] ?? a), 'en', { numeric: true })\n    );\n};\n\nexport function getCells(\n    data: DataFrame,\n    xColumn: ColumnName,\n    yColumn: ColumnName,\n    valueColumn: ColumnName,\n    facetBy: ColumnName[],\n    xGroupBy: ColumnName[],\n    yGroupBy: ColumnName[],\n    annotations: HeatmapSettingsImpl['annotations'],\n    dendrogramX: HeatmapSettingsImpl['dendrogramX'],\n    dendrogramY: HeatmapSettingsImpl['dendrogramY'],\n    normalization: HeatmapSettingsImpl['normalization'],\n    NAValueAs: HeatmapSettingsImpl['NAValueAs'],\n    keysOrder: HeatmapSettingsImpl['keysOrder'],\n    xAxis: HeatmapSettingsImpl['chartSettings']['xAxis'],\n    yAxis: HeatmapSettingsImpl['chartSettings']['yAxis'],\n): GroupedCellsData {\n    const dataSize = data.columnNames.length ? data.getColumn(data.columnNames[0]).length : 0;\n    if (dataSize > MAX_RENDERED_CELLS_COUNT) {\n        console.error(`Too many cells for graph rendering (${dataSize})`);\n    }\n    const facetKeysLists = facetBy.length\n        ? facetBy.map(column => keysOrder[column.value] ?? data.getColumnCategories(column.value))\n        : [['null']];\n    const xGroupKeysLists = xGroupBy.length\n        ? xGroupBy.map(column => keysOrder[column.value] ?? data.getColumnCategories(column.value))\n        : [['null']];\n    const yGroupKeysLists = yGroupBy.length\n        ? yGroupBy.map(column => keysOrder[column.value] ?? data.getColumnCategories(column.value))\n        : [['null']];\n    const facetKeysCombinations = getKeysCombinations(facetKeysLists);\n    const xGroupKeysCombinations = getKeysCombinations(xGroupKeysLists);\n    const yGroupKeysCombinations = getKeysCombinations(yGroupKeysLists);\n\n    const facetKeys = facetKeysCombinations.map(keys => keys.join('_'));\n    const xGroupKeys = xGroupKeysCombinations.map(keys => keys.join('_'));\n    const yGroupKeys = yGroupKeysCombinations.map(keys => keys.join('_'));\n\n    const result: GroupedCellsData = {\n        meta: {\n            facetKeys,\n            xGroupKeys,\n            yGroupKeys,\n            xKeysByGroups: {},\n            yKeysByGroups: {},\n            xLabels: {},\n            yLabels: {},\n            xGroupLabels: {},\n            yGroupLabels: {},\n            xDataByKeys: {},\n            yDataByKeys: {},\n            facetKeyValues: facetKeys.reduce((res: Record<string, string[]>, key, index) => {\n                res[key] = facetKeysCombinations[index];\n                return res;\n            }, {}),\n            xGroupKeyValues: xGroupKeys.reduce((res: Record<string, string[]>, key, index) => {\n                res[key] = xGroupKeysCombinations[index];\n                return res;\n            }, {}),\n            yGroupKeyValues: yGroupKeys.reduce((res: Record<string, string[]>, key, index) => {\n                res[key] = yGroupKeysCombinations[index];\n                return res;\n            }, {}),\n            valueExtent: [Infinity, -Infinity],\n        },\n        facets: {},\n    };\n\n    const xLabelsSource = xColumn.valueLabels ?? xColumn.value;\n    const yLabelsSource = yColumn.valueLabels ?? yColumn.value;\n    const annotationColumnsX = annotations.filter(item => item.axis === 'x').map(item => item.valueColumn.value);\n    const annotationColumnsY = annotations.filter(item => item.axis === 'y').map(item => item.valueColumn.value);\n    const dendrogramXColumns = Object.values(dendrogramX ?? {}).map(column => column.value);\n    const dendrogramYColumns = Object.values(dendrogramY ?? {}).map(column => column.value);\n    const additionalDataColumnsX = lodash.uniq([...annotationColumnsX, ...dendrogramXColumns, xLabelsSource]);\n    const additionalDataColumnsY = lodash.uniq([...annotationColumnsY, ...dendrogramYColumns, yLabelsSource]);\n\n    for (let i = 0; i < data.rowsCount; i++) {\n        const facetKey = facetBy.length ? facetBy.map(column => data.getColumnValue(column.value, i)).join('_') : 'null';\n        const xGroupKey = xGroupBy.length ? xGroupBy.map(column => data.getColumnValue(column.value, i)).join('_') : 'null';\n        const yGroupKey = yGroupBy.length ? yGroupBy.map(column => data.getColumnValue(column.value, i)).join('_') : 'null';\n        const xGroupLabel = xGroupBy.length ? xGroupBy.map(column => data.getColumnValue(column.valueLabels ?? column.value, i)).join(', ') : '';\n        const yGroupLabel = yGroupBy.length ? yGroupBy.map(column => data.getColumnValue(column.valueLabels ?? column.value, i)).join(', ') : '';\n        result.meta.xGroupLabels[xGroupKey] = xGroupLabel;\n        result.meta.yGroupLabels[yGroupKey] = yGroupLabel;\n        const x = String(data.getColumnValue(xColumn.value, i));\n        const y = String(data.getColumnValue(yColumn.value, i));\n        const value = (data.getColumnValue(valueColumn.value, i) ?? NAValueAs) as number | null;\n        \n        if (x === 'null' || y === 'null' || value === null) {\n            continue;\n        }\n\n        if (!result.facets[facetKey]) {\n            result.facets[facetKey] = {\n                xKeys: [],\n                yKeys: [],\n                xKeysByGroups: {},\n                yKeysByGroups: {},\n                cells: {},\n            };\n        }\n        if (!result.facets[facetKey].xKeysByGroups[xGroupKey]) {\n            result.facets[facetKey].xKeysByGroups[xGroupKey] = [];\n        }\n        if (!result.facets[facetKey].yKeysByGroups[yGroupKey]) {\n            result.facets[facetKey].yKeysByGroups[yGroupKey] = [];\n        }\n        result.facets[facetKey].xKeys.push(x);\n        result.facets[facetKey].yKeys.push(y);\n        result.facets[facetKey].xKeysByGroups[xGroupKey].push(x);\n        result.facets[facetKey].yKeysByGroups[yGroupKey].push(y);\n\n        if (!result.facets[facetKey].cells[x]) {\n            result.facets[facetKey].cells[x] = {};\n        }\n        result.meta.valueExtent[0] = Math.min(value, result.meta.valueExtent[0]);\n        result.meta.valueExtent[1] = Math.max(value, result.meta.valueExtent[1]);\n        if (result.facets[facetKey].cells[x][y] && result.facets[facetKey].cells[x][y].value !== value) {\n            throw Error(`More than 1 value for x=${x}, y=${y}`);\n        }\n        const xLabelsSourceValue = data.getColumnValue(xLabelsSource, i);\n        if (result.meta.xLabels[x] && String(xLabelsSourceValue) !== result.meta.xLabels[x]) {\n            throw Error(`More than 1 x-label value for x=${x}`);\n        }\n        const yLabelsSourceValue = data.getColumnValue(yLabelsSource, i);\n        if (result.meta.yLabels[y] && String(yLabelsSourceValue) !== result.meta.yLabels[y]) {\n            throw Error(`More than 1 y-label value for y=${y}`);\n        }\n        result.meta.xLabels[x] = String(xLabelsSourceValue);\n        result.meta.yLabels[y] = String(yLabelsSourceValue);\n        // data for labels, annotations and dendrograms by X\n        additionalDataColumnsX.forEach(columnKey => {\n            const isAddedColumn = typeof result.meta.xDataByKeys[columnKey] !== 'undefined';\n            const isAddedValue = isAddedColumn && typeof result.meta.xDataByKeys[columnKey][x] !== 'undefined';\n            if (!isAddedColumn) {\n                result.meta.xDataByKeys[columnKey] = {};\n            }\n            if (isAddedValue && result.meta.xDataByKeys[columnKey][x] !== data.getColumnValue(columnKey, i)) {\n                throw Error(`More than 1 value for x = ${x} and column = ${columnKey}`);\n            }\n            if (!isAddedValue) {\n                result.meta.xDataByKeys[columnKey][x] = data.getColumnValue(columnKey, i);\n            }\n        });\n        // data for labels, annotations and dendrograms by Y\n        additionalDataColumnsY.forEach(columnKey => {\n            const isAddedColumn = typeof result.meta.yDataByKeys[columnKey] !== 'undefined';\n            const isAddedValue = isAddedColumn && typeof result.meta.yDataByKeys[columnKey][y] !== 'undefined';\n            if (!isAddedColumn) {\n                result.meta.yDataByKeys[columnKey] = {};\n            }\n            if (isAddedValue && result.meta.yDataByKeys[columnKey][y] !== data.getColumnValue(columnKey, i)) {\n                throw Error(`More than 1 value for y = ${y} and column = ${columnKey}`);\n            }\n            if (!isAddedValue) {\n                result.meta.yDataByKeys[columnKey][y] = data.getColumnValue(columnKey, i);\n            }\n        });\n        result.facets[facetKey].cells[x][y] = {\n            isCell: true,\n            idx: i,\n            id: `${x}_${y}`,\n            x,\n            y,\n            value,\n            normalizedValue: value,\n        };\n    }\n\n    result.meta.facetKeys = result.meta.facetKeys.filter((key) => result.facets[key]); // filter only used;\n\n    // make uniq x, y, x-group and y-group keys\n    result.meta.facetKeys.forEach(facetKey => {\n        const facet = result.facets[facetKey];\n        const uniqueXKeys = lodash.uniq(facet.xKeys);\n        const uniqueYKeys = lodash.uniq(facet.yKeys);\n        facet.xKeys = keysOrder[xColumn.value] ? lodash.intersection(keysOrder[xColumn.value], uniqueXKeys) : uniqueXKeys;\n        facet.yKeys = keysOrder[yColumn.value] ? lodash.intersection(keysOrder[yColumn.value], uniqueYKeys) : uniqueYKeys;\n        xGroupKeys.forEach(xGroupKey => {\n            result.facets[facetKey].xKeysByGroups[xGroupKey] = lodash.intersection(\n                facet.xKeys,\n                result.facets[facetKey].xKeysByGroups[xGroupKey]\n            );\n        });\n        yGroupKeys.forEach(yGroupKey => {\n            result.facets[facetKey].yKeysByGroups[yGroupKey] = lodash.intersection(\n                facet.yKeys,\n                result.facets[facetKey].yKeysByGroups[yGroupKey]\n            );\n        });\n    });\n\n    if (normalization) {\n        const valueExtent = [Infinity, -Infinity] as [number, number];\n        result.meta.facetKeys.forEach(facetKey => {\n            const {xKeys, yKeys, cells} = result.facets[facetKey];\n            const cellKeys = normalization.direction === 'row' ? xKeys : yKeys;\n            const groupKeys = normalization.direction === 'row' ? yKeys : xKeys;\n            const cellGetter = normalization.direction === 'row'\n                ? (cellKey:string, groupKey:string) => cells[cellKey]?.[groupKey]\n                : (cellKey:string, groupKey:string) => cells[groupKey]?.[cellKey];\n            groupKeys.forEach((groupKey) => {\n                const values:number[] = [];\n                cellKeys.forEach((cellKey) => {\n                    const v = cellGetter(cellKey, groupKey)?.value;\n                    if (v !== undefined) {\n                        values.push(v as number);\n                    }\n                });\n                const normalize = getNormalizationFn(normalization.method, values);\n                cellKeys.forEach((cellKey) => {\n                    const cell = cellGetter(cellKey, groupKey);\n                    if (cell !== undefined) {\n                        cell.normalizedValue = normalize(cell.value as number);\n                        valueExtent[0] = Math.min(cell.normalizedValue, valueExtent[0]);\n                        valueExtent[1] = Math.max(cell.normalizedValue, 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package/dist/heatmap/index.d.ts.map

@@ -1 +1 @@
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