npm - @milaboratories/graph-maker - Versions diffs - 1.1.195 → 1.1.197 - Mend

@milaboratories/graph-maker 1.1.195 → 1.1.197

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Files changed (63) hide show

package/dist/constantsCommon.js CHANGED Viewed

@@ -22,7 +22,7 @@ import ae from "./icons/StackedAreaIcon.vue.js";
 import le from "./icons/ViolinAndBinnedIcon.vue.js";
 import ie from "./icons/ViolinAndJitterIcon.vue.js";
 import se from "./icons/ViolinIcon.vue.js";
-function je(o, t) {
+function we(o, t) {
   return t === "discrete" ? o && de[o] ? o : "box" : t === "scatterplot" || t === "scatterplot-umap" ? o && ue[o] ? o : "dots" : t === "dendro" ? "dendro" : o ?? "heatmap";
 }
 const de = {
@@ -50,7 +50,7 @@ const de = {
   dots: ["dots"],
   curve: ["curve"],
   curve_dots: ["curve", "dots"]
-}, Ge = {
+}, je = {
   dots: ["dots"],
   curve_dots: ["curve", "dots"]
 }, Fe = {
@@ -79,7 +79,7 @@ const de = {
   bubble: "Bubble plot"
 };
 function Ye(o, t) {
-  var l, a, n, c, m, f, p, b, g, h, A, _, D, L, T, S, E, M, v, x, y, I, B, C, H, O, k, P, w, j, G;
+  var l, a, n, c, m, f, p, b, g, h, A, _, T, D, L, x, S, M, v, E, y, I, B, C, O, H, G, P, k, w, j;
   if (o === "discrete") {
     const e = t;
     return {
@@ -93,30 +93,30 @@ function Ye(o, t) {
           referenceGroup: ((b = (p = e == null ? void 0 : e.referenceGroup) == null ? void 0 : p.data) == null ? void 0 : b.referenceGroup) ?? null,
           correctionMethod: ((h = (g = e == null ? void 0 : e.referenceGroup) == null ? void 0 : g.data) == null ? void 0 : h.correctionMethod) ?? "Bonferroni",
           format: ((_ = (A = e == null ? void 0 : e.referenceGroup) == null ? void 0 : A.data) == null ? void 0 : _.format) ?? "significance",
-          ns: ((L = (D = e == null ? void 0 : e.referenceGroup) == null ? void 0 : D.data) == null ? void 0 : L.ns) ?? !1
+          ns: ((D = (T = e == null ? void 0 : e.referenceGroup) == null ? void 0 : T.data) == null ? void 0 : D.ns) ?? !1
         },
         validity: {
-          testMethod: ((S = (T = e == null ? void 0 : e.referenceGroup) == null ? void 0 : T.validity) == null ? void 0 : S.testMethod) ?? !0,
-          referenceGroup: ((M = (E = e == null ? void 0 : e.referenceGroup) == null ? void 0 : E.validity) == null ? void 0 : M.referenceGroup) ?? !0
+          testMethod: ((x = (L = e == null ? void 0 : e.referenceGroup) == null ? void 0 : L.validity) == null ? void 0 : x.testMethod) ?? !0,
+          referenceGroup: ((M = (S = e == null ? void 0 : e.referenceGroup) == null ? void 0 : S.validity) == null ? void 0 : M.referenceGroup) ?? !0
         }
       },
       pairwise: {
         data: {
-          testMethod: ((x = (v = e == null ? void 0 : e.pairwise) == null ? void 0 : v.data) == null ? void 0 : x.testMethod) ?? null,
+          testMethod: ((E = (v = e == null ? void 0 : e.pairwise) == null ? void 0 : v.data) == null ? void 0 : E.testMethod) ?? null,
           correctionMethod: ((I = (y = e == null ? void 0 : e.pairwise) == null ? void 0 : y.data) == null ? void 0 : I.correctionMethod) ?? "Bonferroni",
           format: ((C = (B = e == null ? void 0 : e.pairwise) == null ? void 0 : B.data) == null ? void 0 : C.format) ?? "significance",
-          ns: ((O = (H = e == null ? void 0 : e.pairwise) == null ? void 0 : H.data) == null ? void 0 : O.ns) ?? !1
+          ns: ((H = (O = e == null ? void 0 : e.pairwise) == null ? void 0 : O.data) == null ? void 0 : H.ns) ?? !1
         },
-        validity: { testMethod: ((P = (k = e == null ? void 0 : e.pairwise) == null ? void 0 : k.validity) == null ? void 0 : P.testMethod) ?? !0 }
+        validity: { testMethod: ((P = (G = e == null ? void 0 : e.pairwise) == null ? void 0 : G.validity) == null ? void 0 : P.testMethod) ?? !0 }
       }
     };
   }
   const r = t;
   return {
     trend: {
-      on: ((w = r == null ? void 0 : r.trend) == null ? void 0 : w.on) ?? !1,
-      trim: ((j = r == null ? void 0 : r.trend) == null ? void 0 : j.trim) ?? !1,
-      showLegend: ((G = r == null ? void 0 : r.trend) == null ? void 0 : G.showLegend) ?? !0
+      on: ((k = r == null ? void 0 : r.trend) == null ? void 0 : k.on) ?? !1,
+      trim: ((w = r == null ? void 0 : r.trend) == null ? void 0 : w.trim) ?? !1,
+      showLegend: ((j = r == null ? void 0 : r.trend) == null ? void 0 : j.showLegend) ?? !0
     }
   };
 }
@@ -336,7 +336,8 @@ const me = () => ({
     facetColumns: 3,
     binsCount: 10,
     groupingDirection: "straight",
-    groupingStack: "vertical"
+    groupingStack: "vertical",
+    showLegend: !0
   }
 });
 function V(o) {
@@ -419,8 +420,15 @@ const Je = {
 ], Qe = [
   { value: "pValue", text: "p-value" },
   { value: "significance", text: "significance" }
-], Ze = 600, $e = 350, eo = 400, oo = 250, to = 100;
+], Ze = 600, $e = 350, eo = 400, oo = 250, to = 100, ro = [
+  { value: "sum", text: "Sum" },
+  { value: "mean", text: "Mean" },
+  { value: "median", text: "Median" },
+  { value: "min", text: "Min" },
+  { value: "max", text: "Max" }
+];
 export {
+  ro as AGGREGATION_METHOD_OPTIONS,
   $e as DEFAULT_HEIGHT,
   oo as DEFAULT_HEIGHT_SMALL,
   ce as DEFAULT_LAYERS_SETTINGS,
@@ -434,13 +442,13 @@ export {
   Ne as LAYER_TITLES,
   to as MAX_SEARCH_OPTIONS_LIST_LENGTH,
   ue as SCATTERPLOT_TEMPLATES_MAP,
-  Ge as SCATTERPLOT_UMAP_TEMPLATES_MAP,
+  je as SCATTERPLOT_UMAP_TEMPLATES_MAP,
   qe as STAT_CORRECTION_METHOD,
   Ke as STAT_TEST_METHOD,
   We as getInitialAxesSettings,
   Xe as getInitialLayersSettings,
   Ye as getInitialStatisticsState,
-  je as getInitialTemplate,
+  we as getInitialTemplate,
   Ve as isContinuousDataMapping,
   Ue as isMappedAes,
   ze as isNumberRange

package/dist/constantsCommon.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"constantsCommon.js","sources":["../src/constantsCommon.ts"],"sourcesContent":["import type { ChartType } from '@milaboratories/pf-plots';\nimport type { Component } from 'vue';\nimport type {\n DotShape,\n LineType,\n} from './components/AesSettings/types';\nimport {\n DEFAULT_BLACK,\n DEFAULT_DOT_SHAPE,\n DEFAULT_LINE_TYPE,\n} from './constantsAesthetic';\nimport { DEFAULT_DOT_SIZE, DEFAULT_LINE_COLOR } from './dataBindAes';\nimport BarAndErrorIcon from './icons/BarAndErrorIcon.vue';\nimport BarAndLineIcon from './icons/BarAndLineIcon.vue';\nimport BarIcon from './icons/BarIcon.vue';\nimport BinnedDotsIcon from './icons/BinnedDotsIcon.vue';\nimport BoxplotAndBinnedIcon from './icons/BoxplotAndBinnedIcon.vue';\nimport BoxplotAndJitterIcon from './icons/BoxplotAndJitterIcon.vue';\nimport BoxplotIcon from './icons/BoxplotIcon.vue';\nimport DendroIcon from './icons/DendroIcon.vue';\nimport HeatmapIcon from './icons/HeatmapIcon.vue';\nimport JitteredDotsIcon from './icons/JitteredDotsIcon.vue';\nimport LineAndBinnedIcon from './icons/LineAndBinnedIcon.vue';\nimport LineAndErrorbarIcon from './icons/LineAndErrorbarIcon.vue';\nimport LineAndJitterIcon from './icons/LineAndJitterIcon.vue';\nimport LineIcon from './icons/LineIcon.vue';\nimport LogoIcon from './icons/LogoIcon.vue';\nimport ScatterplotIcon from './icons/ScatterplotIcon.vue';\nimport SinaIcon from './icons/SinaIcon.vue';\nimport StackedBarIcon from './icons/StackedBarIcon.vue';\nimport StackedAreaIcon from './icons/StackedAreaIcon.vue';\nimport ViolinAndBinnedIcon from './icons/ViolinAndBinnedIcon.vue';\nimport ViolinAndJitterIcon from './icons/ViolinAndJitterIcon.vue';\nimport ViolinIcon from './icons/ViolinIcon.vue';\nimport type {\n AxisTitleMode,\n DeepPartial,\n DiscreteLayer,\n DiscreteLayersTemplate,\n Frame,\n HeatmapFrame, HeatmapLayer, HeatmapLayerTemplate, HistogramLayer, HistogramLayerTemplate,\n LabelsPosition,\n LabelsRotation,\n Layer,\n LayersTemplate,\n Scale,\n ScatterplotLayer,\n ScatterplotLayersTemplate,\n TitlePosition,\n} from './types';\n\nexport const DEFAULT_CHART_TYPE: ChartType = 'discrete';\n\nexport function getInitialTemplate(\n restoredTemplate: LayersTemplate \| null,\n chartType: ChartType,\n) {\n if (chartType === 'discrete') {\n return restoredTemplate\n && DISCRETE_TEMPLATES_MAP[restoredTemplate as DiscreteLayersTemplate]\n ? restoredTemplate\n : 'box';\n }\n if (chartType === 'scatterplot' \|\| chartType === 'scatterplot-umap') {\n return restoredTemplate\n && SCATTERPLOT_TEMPLATES_MAP[restoredTemplate as ScatterplotLayersTemplate]\n ? restoredTemplate\n : 'dots';\n }\n if (chartType === 'dendro') {\n return 'dendro';\n }\n return restoredTemplate ?? 'heatmap';\n}\n\nexport const DISCRETE_TEMPLATES_MAP: Record<\n DiscreteLayersTemplate,\n DiscreteLayer[]\n> = {\n box: ['box'],\n box_binnedDots: ['box', 'binnedDots'],\n box_jitteredDots: ['box', 'jitteredDots'],\n violin: ['violin'],\n violin_binnedDots: ['violin', 'binnedDots'],\n violin_jitteredDots: ['violin', 'jitteredDots'],\n binnedDots: ['binnedDots'],\n jitteredDots: ['jitteredDots'],\n bar: ['bar'],\n bar_line: ['bar', 'line'],\n bar_errorbar: ['bar', 'errorbar'],\n stackedBar: ['stackedBar'],\n stackedArea: ['stackedArea'],\n line: ['line'],\n line_jitteredDots: ['line', 'jitteredDots'],\n line_binnedDots: ['line', 'binnedDots'],\n line_errorbar: ['line', 'errorbar'],\n errorbar: ['errorbar'],\n sina: ['sina'],\n logo: ['logo'],\n};\n\nexport const SCATTERPLOT_TEMPLATES_MAP: Record<\n ScatterplotLayersTemplate,\n ScatterplotLayer[]\n> = {\n dots: ['dots'],\n curve: ['curve'],\n curve_dots: ['curve', 'dots'],\n};\n\nexport const SCATTERPLOT_UMAP_TEMPLATES_MAP: Partial<Record<\n ScatterplotLayersTemplate,\n ScatterplotLayer[]\n>> = {\n dots: ['dots'],\n curve_dots: ['curve', 'dots'],\n};\n\nexport const HEATMAP_TEMPLATES_MAP: Record<HeatmapLayerTemplate, HeatmapLayer[]> = {\n heatmap: ['heatmap'],\n heatmapClustered: ['heatmapClustered'],\n};\nexport const HISTOGRAM_TEMPLATES_MAP: Record<HistogramLayerTemplate, HistogramLayer[]> = {\n bins: ['bins'],\n};\nexport const LAYER_TITLES: Record<Layer, string> = {\n box: 'Boxplot',\n binnedDots: 'Binned Dots',\n jitteredDots: 'Jittered Dots',\n violin: 'Violins',\n bar: 'Bar',\n stackedBar: 'Stacked Bar',\n stackedArea: 'Stacked Bar + Stream Area',\n line: 'Line',\n errorbar: 'Error Bar',\n sina: 'Sina',\n logo: 'Logo Plot',\n dots: 'Scatter Plot',\n curve: 'Curve',\n heatmap: 'Heatmap',\n heatmapClustered: 'Heatmap + Dendro',\n dendro: 'Dendrogram',\n bins: 'Histogram',\n bubble: 'Bubble plot',\n};\n\nexport type DiscreteStatisticsState = {\n overall: {\n data: { testMethod: null \| string };\n validity: { testMethod: boolean };\n };\n referenceGroup: {\n data: {\n testMethod: null \| string;\n referenceGroup: null \| string;\n correctionMethod: string;\n format: 'significance' \| 'pValue';\n ns: boolean;\n };\n validity: {\n testMethod: boolean;\n referenceGroup: boolean;\n };\n };\n pairwise: {\n data: {\n testMethod: null \| string;\n correctionMethod: string;\n format: 'significance' \| 'pValue';\n ns: boolean;\n };\n validity: { testMethod: boolean };\n };\n};\n\nexport type ScatterplotStatisticsState = {\n trend: {\n on: boolean;\n trim: boolean;\n showLegend: boolean;\n };\n};\n\nexport type StatisticsState = DiscreteStatisticsState \| ScatterplotStatisticsState;\n\nexport function getInitialStatisticsState(chartType: ChartType, initialData?: DeepPartial<StatisticsState>): StatisticsState {\n if (chartType === 'discrete') {\n const initial = initialData as DiscreteStatisticsState;\n return {\n overall: {\n data: { testMethod: initial?.overall?.data?.testMethod ?? null },\n validity: { testMethod: initial?.overall?.validity?.testMethod ?? true },\n },\n referenceGroup: {\n data: {\n testMethod: initial?.referenceGroup?.data?.testMethod ?? null,\n referenceGroup: initial?.referenceGroup?.data?.referenceGroup ?? null,\n correctionMethod: initial?.referenceGroup?.data?.correctionMethod ?? 'Bonferroni',\n format: initial?.referenceGroup?.data?.format ?? 'significance',\n ns: initial?.referenceGroup?.data?.ns ?? false,\n },\n validity: {\n testMethod: initial?.referenceGroup?.validity?.testMethod ?? true,\n referenceGroup: initial?.referenceGroup?.validity?.referenceGroup ?? true,\n },\n },\n pairwise: {\n data: {\n testMethod: initial?.pairwise?.data?.testMethod ?? null,\n correctionMethod: initial?.pairwise?.data?.correctionMethod ?? 'Bonferroni',\n format: initial?.pairwise?.data?.format ?? 'significance',\n ns: initial?.pairwise?.data?.ns ?? false,\n },\n validity: { testMethod: initial?.pairwise?.validity?.testMethod ?? true },\n },\n } as DiscreteStatisticsState;\n }\n const initial = initialData as ScatterplotStatisticsState;\n return {\n trend: {\n on: initial?.trend?.on ?? false,\n trim: initial?.trend?.trim ?? false,\n showLegend: initial?.trend?.showLegend ?? true,\n },\n };\n}\n\nexport type NumberRange = { min: number; max: number };\nexport type MappingLink = { type: string; value?: string }; // {type: 'primaryGrouping'} for example\nexport type ColorAes = string \| MappingLink;\nexport type DotShapeAes = DotShape \| MappingLink;\nexport type DotSizeAes = number \| NumberRange;\nexport type LineTypeAes = LineType \| MappingLink;\nexport type FixedOrMappedAes = ColorAes \| DotShapeAes \| LineTypeAes;\n\nexport type ContinuousDataMappingSize = {\n column: string;\n range: NumberRange;\n};\n\nexport type ContinuousDataMappingForGraph<T extends string \| number> = { columnName: ColumnNameSchema; domain: number[]; range: T[]; type: 'linear' \| 'log' };\n\nexport type ColumnNameSchema = {\n type: 'column';\n value: string;\n label?: string;\n valueLabels?: string;\n};\n\nexport function isNumberRange(v: number \| NumberRange \| null \| undefined): v is NumberRange {\n return typeof v !== 'undefined' && v !== null && typeof v === 'object' && 'min' in v && 'max' in v;\n}\n\nexport function isMappedAes(\n item: FixedOrMappedAes \| null \| string \| number \| boolean \| unknown,\n): item is MappingLink {\n return typeof item === 'object' && item !== null && 'type' in item;\n}\n\nexport function isContinuousDataMapping(v: ContinuousDataMappingSize \| MappingLink \| number \| string \| null \| undefined): v is ContinuousDataMappingSize {\n return typeof v !== 'undefined' && v !== null && typeof v === 'object' && 'range' in v;\n}\n\nexport type LayersSettings = {\n // bubble\n bubble: {\n NAValueAs: number \| null;\n minRadius: number;\n maxRadius: number;\n normalizationDirection: 'row' \| 'column' \| null;\n normalizationMethod: 'standardScaling' \| 'meanNormalization';\n aggregateByX: boolean;\n aggregateByY: boolean;\n aggregationMethod: 'mean' \| 'median' \| 'min' \| 'max';\n strokeColor: null \| string;\n };\n // histogram\n bins: {\n fillColor: ColorAes \| null;\n opacity: number;\n };\n // dendrogram\n dendro: {\n dotFill: ColorAes;\n dotShape: DotShapeAes;\n dotSize: DotSizeAes;\n lineColor: ColorAes;\n mode: 'normal' \| 'useAllNodesAsLeaves';\n leavesMode: 'normal' \| 'alignLeavesToLine';\n showTable: boolean;\n showLegend: boolean;\n };\n // heatmap\n heatmap: {\n NAValueAs: number \| null;\n normalizationDirection: 'row' \| 'column' \| null;\n normalizationMethod: 'standardScaling' \| 'meanNormalization';\n aggregateByX: boolean;\n aggregateByY: boolean;\n aggregationMethod: 'mean' \| 'median' \| 'min' \| 'max';\n };\n heatmapClustered: {\n NAValueAs: number \| null;\n normalizationDirection: 'row' \| 'column' \| null;\n normalizationMethod: 'standardScaling' \| 'meanNormalization';\n dendrogramX: boolean;\n dendrogramY: boolean;\n disableClusteringX: boolean;\n disableClusteringY: boolean;\n aggregateByX: boolean;\n aggregateByY: boolean;\n aggregationMethod: 'mean' \| 'median' \| 'min' \| 'max';\n };\n // scatterplot\n dots: {\n dotFill: ColorAes \| null;\n dotShape: DotShapeAes \| null;\n dotSize: ContinuousDataMappingSize \| number \| null;\n };\n curve: {\n smoothing: boolean;\n lineColor: ColorAes;\n };\n // discrete\n box: {\n showOutliers: boolean;\n fillColor: ColorAes \| null;\n lineColor: ColorAes;\n dotShape: DotShapeAes;\n lineType: LineTypeAes;\n gapWidth: number;\n opacity: number;\n stat: {\n low: number;\n middle: number;\n upper: number;\n k: number;\n };\n };\n binnedDots: {\n fillColor: ColorAes \| null;\n lineColor: ColorAes;\n opacity: number;\n showOutliers: boolean;\n };\n jitteredDots: {\n dotFill: ColorAes \| null;\n dotShape: DotShapeAes;\n lineColor: ColorAes;\n opacity: number;\n showOutliers: boolean;\n };\n violin: {\n fillColor: ColorAes \| null;\n lineColor: ColorAes;\n lineType: LineTypeAes;\n opacity: number;\n trim: boolean;\n showQuartiles: boolean;\n quartilesLineStyle: LineType;\n medianLineStyle: LineType;\n };\n bar: {\n fillColor: ColorAes \| null;\n lineColor: ColorAes;\n opacity: number;\n height: 'max' \| 'mean' \| 'median';\n };\n stackedBar: {\n fillColor: ColorAes \| null;\n lineColor: ColorAes;\n opacity: number;\n normalize: boolean;\n height: 'sum' \| 'max' \| 'mean' \| 'median';\n };\n stackedArea: {\n fillColor: ColorAes \| null;\n lineColor: ColorAes;\n barsOpacity: number;\n areaOpacity: number;\n normalize: boolean;\n height: 'sum' \| 'max' \| 'mean' \| 'median';\n showBars: boolean;\n };\n line: {\n pointsValues: 'mean' \| 'median';\n emptyGroupValue: number;\n lineColor: ColorAes \| null;\n dotShape: DotShapeAes;\n lineType: LineTypeAes;\n dotFill: ColorAes \| null;\n opacity: number;\n };\n errorbar: {\n pointsValues: 'mean' \| 'median';\n interval: 'sd' \| 'se' \| '';\n lineColor: ColorAes \| null;\n dotShape: DotShapeAes;\n dotFill: ColorAes \| null;\n opacity: number;\n };\n sina: {\n dotFill: ColorAes \| null;\n dotShape: DotShapeAes;\n opacity: number;\n showOutliers: boolean;\n };\n logo: {\n normalize: boolean;\n opacity: number;\n };\n};\nexport const DEFAULT_LAYERS_SETTINGS: () => LayersSettings = () => ({\n // bubble\n bubble: {\n NAValueAs: 0,\n strokeColor: null,\n minRadius: 3,\n maxRadius: 38,\n normalizationDirection: 'row',\n normalizationMethod: 'standardScaling',\n aggregateByX: false,\n aggregateByY: false,\n aggregationMethod: 'mean',\n },\n // histogram\n bins: {\n fillColor: null,\n opacity: 1,\n },\n // dendro\n dendro: {\n dotFill: DEFAULT_BLACK,\n dotShape: DEFAULT_DOT_SHAPE,\n dotSize: DEFAULT_DOT_SIZE,\n lineColor: DEFAULT_BLACK,\n mode: 'normal',\n leavesMode: 'normal',\n showTable: false,\n showLegend: true,\n },\n // heatmap\n heatmap: {\n NAValueAs: 0,\n normalizationDirection: 'row',\n normalizationMethod: 'standardScaling',\n aggregateByX: false,\n aggregateByY: false,\n aggregationMethod: 'mean',\n },\n heatmapClustered: {\n NAValueAs: 0,\n normalizationDirection: 'row',\n normalizationMethod: 'standardScaling',\n dendrogramX: true,\n dendrogramY: true,\n disableClusteringX: false,\n disableClusteringY: false,\n aggregateByX: false,\n aggregateByY: false,\n aggregationMethod: 'mean',\n },\n // scatterplot\n dots: {\n dotFill: null as ColorAes \| null,\n dotShape: null as DotShapeAes \| null,\n dotSize: null as ContinuousDataMappingSize \| number \| null,\n },\n curve: { lineColor: DEFAULT_BLACK, smoothing: true },\n // discrete\n box: {\n showOutliers: true,\n fillColor: null as ColorAes \| null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n gapWidth: 0.2,\n opacity: 1,\n stat: {\n low: 0.25,\n middle: 0.5,\n upper: 0.75,\n k: 1.5,\n },\n },\n binnedDots: {\n fillColor: null as ColorAes \| null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n showOutliers: true,\n },\n jitteredDots: {\n dotFill: null as ColorAes \| null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n showOutliers: true,\n },\n violin: {\n fillColor: null as ColorAes \| null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n opacity: 1,\n trim: false,\n showQuartiles: false,\n quartilesLineStyle: 'dashed',\n medianLineStyle: 'solid',\n },\n bar: {\n fillColor: null as ColorAes \| null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n height: 'max',\n },\n stackedBar: {\n fillColor: null as ColorAes \| null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n normalize: false,\n height: 'sum',\n },\n stackedArea: {\n fillColor: null as ColorAes \| null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n barsOpacity: 1,\n areaOpacity: 0.7,\n normalize: false,\n showBars: true,\n height: 'sum',\n },\n line: {\n pointsValues: 'mean',\n emptyGroupValue: 0,\n lineColor: null as ColorAes \| null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n dotFill: null as ColorAes \| null,\n opacity: 1,\n },\n errorbar: {\n pointsValues: 'mean',\n interval: 'sd',\n lineColor: null as ColorAes \| null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n dotFill: null as ColorAes \| null,\n opacity: 1,\n },\n sina: {\n dotFill: null as ColorAes \| null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n opacity: 1,\n showOutliers: true,\n },\n logo: {\n normalize: false,\n opacity: 1,\n },\n});\n\nexport function getDefaultLayersSettings() {\n return DEFAULT_LAYERS_SETTINGS();\n}\n\nconst DISCRETE_LAYERS: Layer[] = [\n 'box',\n 'binnedDots',\n 'jitteredDots',\n 'violin',\n 'bar',\n 'stackedBar',\n 'line',\n 'errorbar',\n 'sina',\n 'logo',\n];\nconst SCATTERPLOT_LAYERS: Layer[] = ['dots', 'curve'];\nconst SCATTERPLOT_UMAP_LAYERS: Layer[] = ['dots'];\nconst HEATMAP_LAYERS: Layer[] = ['heatmap', 'heatmapClustered'];\nconst DENDRO_LAYERS: Layer[] = ['dendro'];\nconst HISTOGRAM_LAYERS: Layer[] = ['bins'];\nconst BUBBLE_LAYERS: Layer[] = ['bubble'];\nconst _LAYERS_BY_CHART_TYPE: Record<ChartType, Layer[]> = {\n 'discrete': DISCRETE_LAYERS,\n 'scatterplot': SCATTERPLOT_LAYERS,\n 'scatterplot-umap': SCATTERPLOT_UMAP_LAYERS,\n 'heatmap': HEATMAP_LAYERS,\n 'dendro': DENDRO_LAYERS,\n 'histogram': HISTOGRAM_LAYERS,\n 'bubble': BUBBLE_LAYERS,\n};\n\nexport function getInitialLayersSettings(\n initialSettings?: DeepPartial<LayersSettings>,\n): LayersSettings {\n const defaultSettings = DEFAULT_LAYERS_SETTINGS();\n const layers: Layer[] = Object.keys(defaultSettings) as Layer[];\n return layers.reduce((res, layer) => {\n Object.assign(\n res[layer],\n initialSettings?.[layer] ?? {},\n );\n return res;\n }, defaultSettings);\n}\n\nexport type Sorting = 'asc' \| 'desc';\nexport type AxesState = {\n title: { value: string; position: TitlePosition; mode: AxisTitleMode; facetTitleFrame: Frame };\n axisX: {\n labelsPosition: LabelsPosition; // for heatmap - top/bottom/left/right/hidden\n labelsRotation: LabelsRotation \| null; // only for discrete X axis - 'center'/'90deg'/'45deg'; null for auto mode before user chose\n axisLabelsAngle: 0 \| 45 \| 90; // for heatmap\n groupLabelsAngle: 0 \| 45 \| 90; // for heatmap\n titleMode: AxisTitleMode; // 'auto' - from column or 'custom' - from 'customTitle' field or 'hidden'\n customTitle: string; // user axis title, not default from column\n gridlines: boolean;\n linesBetweenCategories: boolean; // for discrete - position for vertical gridlines\n ticks: boolean;\n scale: Scale; // linear or log\n significantLinesStyle: LineType;\n sorting: Sorting;\n allowNullPrimaryGroups: boolean; // for discrete - allow group with null grouping value\n allowNullSecondaryGroups: boolean;\n order: {\n source: string;\n options: { value: string; label: string }[];\n } \| null;\n cellSize: number \| null;\n annotationTitlePosition: 'left' \| 'right' \| 'hidden';\n hideAxisLabels: boolean;\n hideAxisGroupLabels: boolean;\n };\n axisY: {\n labelsRotation: LabelsRotation \| null; // only for discrete X axis - 'center'/'90deg'/'45deg'; null for auto mode before user chose\n titleMode: AxisTitleMode;\n customTitle: string;\n axisLabelsAngle: 0 \| 45 \| 90; // for heatmap\n groupLabelsAngle: 0 \| 45 \| 90; // for heatmap\n gridlines: boolean;\n ticks: boolean;\n scale: Scale;\n significantLinesStyle: LineType;\n sorting: Sorting;\n order: {\n source: string;\n options: { value: string; label: string }[];\n } \| null;\n cellSize: number \| null;\n annotationTitlePosition: 'top' \| 'bottom' \| 'hidden';\n hideAxisLabels: boolean;\n hideAxisGroupLabels: boolean;\n };\n legend: { show?: boolean };\n other: {\n frame: Frame \| HeatmapFrame;\n reverse: boolean;\n facetSharedBy: 'x' \| 'y' \| 'xy' \| 'none';\n facetColumns: number;\n binsCount: number;\n groupingDirection: 'straight' \| 'reverse';\n groupingStack: 'vertical' \| 'horizontal';\n canvasRenderMode: boolean;\n };\n};\n\nconst DEFAULT_AXES: () => AxesState = () => ({\n title: {\n value: 'Graph 1',\n position: 'center',\n mode: 'auto',\n facetTitleFrame: 'full',\n },\n axisX: {\n labelsPosition: 'bottom',\n labelsRotation: null,\n axisLabelsAngle: 90,\n groupLabelsAngle: 45,\n titleMode: 'auto',\n customTitle: '',\n gridlines: true,\n linesBetweenCategories: true,\n ticks: true,\n scale: 'linear',\n significantLinesStyle: 'dashed',\n sorting: 'asc',\n allowNullPrimaryGroups: false,\n allowNullSecondaryGroups: false,\n order: null,\n cellSize: null,\n annotationTitlePosition: 'right',\n hideAxisLabels: false,\n hideAxisGroupLabels: false,\n },\n axisY: {\n labelsRotation: null,\n titleMode: 'auto',\n customTitle: '',\n axisLabelsAngle: 90,\n groupLabelsAngle: 45,\n gridlines: true,\n ticks: true,\n scale: 'linear',\n significantLinesStyle: 'dashed',\n sorting: 'asc',\n order: null,\n cellSize: null,\n annotationTitlePosition: 'top',\n hideAxisLabels: false,\n hideAxisGroupLabels: false,\n },\n legend: {},\n other: {\n frame: 'full',\n reverse: false,\n canvasRenderMode: false,\n facetSharedBy: 'xy',\n facetColumns: 3,\n binsCount: 10,\n groupingDirection: 'straight',\n groupingStack: 'vertical',\n },\n});\n\nfunction isHeatmapFrame(frame: Frame \| HeatmapFrame): frame is HeatmapFrame {\n return frame === 'full' \|\| frame === 'none';\n}\n\nexport function getInitialAxesSettings(\n chartType: ChartType,\n initialAxesSettings?: DeepPartial<AxesState>,\n): AxesState {\n const defaultAxes = DEFAULT_AXES();\n if (!initialAxesSettings) {\n return defaultAxes;\n }\n\n // TODO: divide into separated settings for chart types\n function getFrame(frame?: Frame \| HeatmapFrame): Frame \| HeatmapFrame {\n if (!frame) {\n return 'full';\n }\n if (chartType === 'heatmap' && !isHeatmapFrame(frame)) {\n return 'full' as HeatmapFrame;\n }\n if (chartType !== 'heatmap' && isHeatmapFrame(frame)) {\n return frame === 'none' ? 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line_binnedDots: LineAndBinnedIcon,\n line_jitteredDots: LineAndJitterIcon,\n line_errorbar: LineAndErrorbarIcon,\n errorbar: BarAndLineIcon,\n sina: SinaIcon,\n logo: LogoIcon,\n dots: ScatterplotIcon,\n curve: LineIcon,\n curve_dots: LineAndJitterIcon,\n heatmap: HeatmapIcon,\n heatmapClustered: DendroIcon,\n dendro: DendroIcon,\n bins: BarIcon,\n bubble: HeatmapIcon,\n};\n\ntype Option = { value: string; text: string };\nexport const STAT_TEST_METHOD: Option[] = [\n { value: 'ttest', text: 'TTest' },\n { value: 'anova', text: 'ANOVA' },\n { value: 'wilcoxon', text: 'Wilcoxon' },\n { value: 'kruskalWallis', text: 'Kruskal-Wallis' },\n];\n\nexport const STAT_CORRECTION_METHOD: Option[] = [\n { value: 'BenjaminiHochberg', text: 'Benjamini-Hochberg' },\n { value: 'BenjaminiYekutieli', text: 'Benjamini-Yekutieli' },\n { value: 'Bonferroni', text: 'Bonferroni' },\n { value: 'Hochberg', text: 'Hochberg' },\n { value: 'Holm', text: 'Holm' },\n { value: 'Hommel', text: 'Hommel' },\n { value: 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1	+ {"version":3,"file":"constantsCommon.js","sources":["../src/constantsCommon.ts"],"sourcesContent":["import type { ChartType } from '@milaboratories/pf-plots';\nimport type { Component } from 'vue';\nimport type {\n DotShape,\n LineType,\n} from './components/AesSettings/types';\nimport {\n DEFAULT_BLACK,\n DEFAULT_DOT_SHAPE,\n DEFAULT_LINE_TYPE,\n} from './constantsAesthetic';\nimport { DEFAULT_DOT_SIZE, DEFAULT_LINE_COLOR } from './dataBindAes';\nimport BarAndErrorIcon from './icons/BarAndErrorIcon.vue';\nimport BarAndLineIcon from './icons/BarAndLineIcon.vue';\nimport BarIcon from './icons/BarIcon.vue';\nimport BinnedDotsIcon from './icons/BinnedDotsIcon.vue';\nimport BoxplotAndBinnedIcon from './icons/BoxplotAndBinnedIcon.vue';\nimport BoxplotAndJitterIcon from './icons/BoxplotAndJitterIcon.vue';\nimport BoxplotIcon from './icons/BoxplotIcon.vue';\nimport DendroIcon from './icons/DendroIcon.vue';\nimport HeatmapIcon from './icons/HeatmapIcon.vue';\nimport JitteredDotsIcon from './icons/JitteredDotsIcon.vue';\nimport LineAndBinnedIcon from './icons/LineAndBinnedIcon.vue';\nimport LineAndErrorbarIcon from './icons/LineAndErrorbarIcon.vue';\nimport LineAndJitterIcon from './icons/LineAndJitterIcon.vue';\nimport LineIcon from './icons/LineIcon.vue';\nimport LogoIcon from './icons/LogoIcon.vue';\nimport ScatterplotIcon from './icons/ScatterplotIcon.vue';\nimport SinaIcon from './icons/SinaIcon.vue';\nimport StackedBarIcon from './icons/StackedBarIcon.vue';\nimport StackedAreaIcon from './icons/StackedAreaIcon.vue';\nimport ViolinAndBinnedIcon from './icons/ViolinAndBinnedIcon.vue';\nimport ViolinAndJitterIcon from './icons/ViolinAndJitterIcon.vue';\nimport ViolinIcon from './icons/ViolinIcon.vue';\nimport type {\n AxisTitleMode,\n DeepPartial,\n DiscreteLayer,\n DiscreteLayersTemplate,\n Frame,\n HeatmapFrame, HeatmapLayer, HeatmapLayerTemplate, HistogramLayer, HistogramLayerTemplate,\n LabelsPosition,\n LabelsRotation,\n Layer,\n LayersTemplate,\n Scale,\n ScatterplotLayer,\n ScatterplotLayersTemplate,\n TitlePosition,\n} from './types';\n\nexport const DEFAULT_CHART_TYPE: ChartType = 'discrete';\n\nexport function getInitialTemplate(\n restoredTemplate: LayersTemplate \| null,\n chartType: ChartType,\n) {\n if (chartType === 'discrete') {\n return restoredTemplate\n && DISCRETE_TEMPLATES_MAP[restoredTemplate as DiscreteLayersTemplate]\n ? restoredTemplate\n : 'box';\n }\n if (chartType === 'scatterplot' \|\| chartType === 'scatterplot-umap') {\n return restoredTemplate\n && SCATTERPLOT_TEMPLATES_MAP[restoredTemplate as ScatterplotLayersTemplate]\n ? restoredTemplate\n : 'dots';\n }\n if (chartType === 'dendro') {\n return 'dendro';\n }\n return restoredTemplate ?? 'heatmap';\n}\n\nexport const DISCRETE_TEMPLATES_MAP: Record<\n DiscreteLayersTemplate,\n DiscreteLayer[]\n> = {\n box: ['box'],\n box_binnedDots: ['box', 'binnedDots'],\n box_jitteredDots: ['box', 'jitteredDots'],\n violin: ['violin'],\n violin_binnedDots: ['violin', 'binnedDots'],\n violin_jitteredDots: ['violin', 'jitteredDots'],\n binnedDots: ['binnedDots'],\n jitteredDots: ['jitteredDots'],\n bar: ['bar'],\n bar_line: ['bar', 'line'],\n bar_errorbar: ['bar', 'errorbar'],\n stackedBar: ['stackedBar'],\n stackedArea: ['stackedArea'],\n line: ['line'],\n line_jitteredDots: ['line', 'jitteredDots'],\n line_binnedDots: ['line', 'binnedDots'],\n line_errorbar: ['line', 'errorbar'],\n errorbar: ['errorbar'],\n sina: ['sina'],\n logo: ['logo'],\n};\n\nexport const SCATTERPLOT_TEMPLATES_MAP: Record<\n ScatterplotLayersTemplate,\n ScatterplotLayer[]\n> = {\n dots: ['dots'],\n curve: ['curve'],\n curve_dots: ['curve', 'dots'],\n};\n\nexport const SCATTERPLOT_UMAP_TEMPLATES_MAP: Partial<Record<\n ScatterplotLayersTemplate,\n ScatterplotLayer[]\n>> = {\n dots: ['dots'],\n curve_dots: ['curve', 'dots'],\n};\n\nexport const HEATMAP_TEMPLATES_MAP: Record<HeatmapLayerTemplate, HeatmapLayer[]> = {\n heatmap: ['heatmap'],\n heatmapClustered: ['heatmapClustered'],\n};\nexport const HISTOGRAM_TEMPLATES_MAP: Record<HistogramLayerTemplate, HistogramLayer[]> = {\n bins: ['bins'],\n};\nexport const LAYER_TITLES: Record<Layer, string> = {\n box: 'Boxplot',\n binnedDots: 'Binned Dots',\n jitteredDots: 'Jittered Dots',\n violin: 'Violins',\n bar: 'Bar',\n stackedBar: 'Stacked Bar',\n stackedArea: 'Stacked Bar + Stream Area',\n line: 'Line',\n errorbar: 'Error Bar',\n sina: 'Sina',\n logo: 'Logo Plot',\n dots: 'Scatter Plot',\n curve: 'Curve',\n heatmap: 'Heatmap',\n heatmapClustered: 'Heatmap + Dendro',\n dendro: 'Dendrogram',\n bins: 'Histogram',\n bubble: 'Bubble plot',\n};\n\nexport type DiscreteStatisticsState = {\n overall: {\n data: { testMethod: null \| string };\n validity: { testMethod: boolean };\n };\n referenceGroup: {\n data: {\n testMethod: null \| string;\n referenceGroup: null \| string;\n correctionMethod: string;\n format: 'significance' \| 'pValue';\n ns: boolean;\n };\n validity: {\n testMethod: boolean;\n referenceGroup: boolean;\n };\n };\n pairwise: {\n data: {\n testMethod: null \| string;\n correctionMethod: string;\n format: 'significance' \| 'pValue';\n ns: boolean;\n };\n validity: { testMethod: boolean };\n };\n};\n\nexport type ScatterplotStatisticsState = {\n trend: {\n on: boolean;\n trim: boolean;\n showLegend: boolean;\n };\n};\n\nexport type StatisticsState = DiscreteStatisticsState \| ScatterplotStatisticsState;\n\nexport function getInitialStatisticsState(chartType: ChartType, initialData?: DeepPartial<StatisticsState>): StatisticsState {\n if (chartType === 'discrete') {\n const initial = initialData as DiscreteStatisticsState;\n return {\n overall: {\n data: { testMethod: initial?.overall?.data?.testMethod ?? null },\n validity: { testMethod: initial?.overall?.validity?.testMethod ?? true },\n },\n referenceGroup: {\n data: {\n testMethod: initial?.referenceGroup?.data?.testMethod ?? null,\n referenceGroup: initial?.referenceGroup?.data?.referenceGroup ?? null,\n correctionMethod: initial?.referenceGroup?.data?.correctionMethod ?? 'Bonferroni',\n format: initial?.referenceGroup?.data?.format ?? 'significance',\n ns: initial?.referenceGroup?.data?.ns ?? false,\n },\n validity: {\n testMethod: initial?.referenceGroup?.validity?.testMethod ?? true,\n referenceGroup: initial?.referenceGroup?.validity?.referenceGroup ?? true,\n },\n },\n pairwise: {\n data: {\n testMethod: initial?.pairwise?.data?.testMethod ?? null,\n correctionMethod: initial?.pairwise?.data?.correctionMethod ?? 'Bonferroni',\n format: initial?.pairwise?.data?.format ?? 'significance',\n ns: initial?.pairwise?.data?.ns ?? false,\n },\n validity: { testMethod: initial?.pairwise?.validity?.testMethod ?? true },\n },\n } as DiscreteStatisticsState;\n }\n const initial = initialData as ScatterplotStatisticsState;\n return {\n trend: {\n on: initial?.trend?.on ?? false,\n trim: initial?.trend?.trim ?? false,\n showLegend: initial?.trend?.showLegend ?? true,\n },\n };\n}\n\nexport type NumberRange = { min: number; max: number };\nexport type MappingLink = { type: string; value?: string }; // {type: 'primaryGrouping'} for example\nexport type ColorAes = string \| MappingLink;\nexport type DotShapeAes = DotShape \| MappingLink;\nexport type DotSizeAes = number \| NumberRange;\nexport type LineTypeAes = LineType \| MappingLink;\nexport type FixedOrMappedAes = ColorAes \| DotShapeAes \| LineTypeAes;\n\nexport type ContinuousDataMappingSize = {\n column: string;\n range: NumberRange;\n};\n\nexport type ContinuousDataMappingForGraph<T extends string \| number> = { columnName: ColumnNameSchema; domain: number[]; range: T[]; type: 'linear' \| 'log' };\n\nexport type ColumnNameSchema = {\n type: 'column';\n value: string;\n label?: string;\n valueLabels?: string;\n};\n\nexport function isNumberRange(v: number \| NumberRange \| null \| undefined): v is NumberRange {\n return typeof v !== 'undefined' && v !== null && typeof v === 'object' && 'min' in v && 'max' in v;\n}\n\nexport function isMappedAes(\n item: FixedOrMappedAes \| null \| string \| number \| boolean \| unknown,\n): item is MappingLink {\n return typeof item === 'object' && item !== null && 'type' in item;\n}\n\nexport function isContinuousDataMapping(v: ContinuousDataMappingSize \| MappingLink \| number \| string \| null \| undefined): v is ContinuousDataMappingSize {\n return typeof v !== 'undefined' && v !== null && typeof v === 'object' && 'range' in v;\n}\n\nexport type LayersSettings = {\n // bubble\n bubble: {\n NAValueAs: number \| null;\n minRadius: number;\n maxRadius: number;\n normalizationDirection: 'row' \| 'column' \| null;\n normalizationMethod: 'standardScaling' \| 'meanNormalization';\n aggregateByX: boolean;\n aggregateByY: boolean;\n aggregationMethod: 'mean' \| 'median' \| 'min' \| 'max';\n strokeColor: null \| string;\n };\n // histogram\n bins: {\n fillColor: ColorAes \| null;\n opacity: number;\n };\n // dendrogram\n dendro: {\n dotFill: ColorAes;\n dotShape: DotShapeAes;\n dotSize: DotSizeAes;\n lineColor: ColorAes;\n mode: 'normal' \| 'useAllNodesAsLeaves';\n leavesMode: 'normal' \| 'alignLeavesToLine';\n showTable: boolean;\n showLegend: boolean;\n };\n // heatmap\n heatmap: {\n NAValueAs: number \| null;\n normalizationDirection: 'row' \| 'column' \| null;\n normalizationMethod: 'standardScaling' \| 'meanNormalization';\n aggregateByX: boolean;\n aggregateByY: boolean;\n aggregationMethod: 'mean' \| 'median' \| 'min' \| 'max';\n };\n heatmapClustered: {\n NAValueAs: number \| null;\n normalizationDirection: 'row' \| 'column' \| null;\n normalizationMethod: 'standardScaling' \| 'meanNormalization';\n dendrogramX: boolean;\n dendrogramY: boolean;\n disableClusteringX: boolean;\n disableClusteringY: boolean;\n aggregateByX: boolean;\n aggregateByY: boolean;\n aggregationMethod: 'mean' \| 'median' \| 'min' \| 'max';\n };\n // scatterplot\n dots: {\n dotFill: ColorAes \| null;\n dotShape: DotShapeAes \| null;\n dotSize: ContinuousDataMappingSize \| number \| null;\n };\n curve: {\n smoothing: boolean;\n lineColor: ColorAes;\n };\n // discrete\n box: {\n showOutliers: boolean;\n fillColor: ColorAes \| null;\n lineColor: ColorAes;\n dotShape: DotShapeAes;\n lineType: LineTypeAes;\n gapWidth: number;\n opacity: number;\n stat: {\n low: number;\n middle: number;\n upper: number;\n k: number;\n };\n };\n binnedDots: {\n fillColor: ColorAes \| null;\n lineColor: ColorAes;\n opacity: number;\n showOutliers: boolean;\n };\n jitteredDots: {\n dotFill: ColorAes \| null;\n dotShape: DotShapeAes;\n lineColor: ColorAes;\n opacity: number;\n showOutliers: boolean;\n };\n violin: {\n fillColor: ColorAes \| null;\n lineColor: ColorAes;\n lineType: LineTypeAes;\n opacity: number;\n trim: boolean;\n showQuartiles: boolean;\n quartilesLineStyle: LineType;\n medianLineStyle: LineType;\n };\n bar: {\n fillColor: ColorAes \| null;\n lineColor: ColorAes;\n opacity: number;\n height: 'max' \| 'mean' \| 'median';\n };\n stackedBar: {\n fillColor: ColorAes \| null;\n lineColor: ColorAes;\n opacity: number;\n normalize: boolean;\n height: 'sum' \| 'max' \| 'mean' \| 'median';\n };\n stackedArea: {\n fillColor: ColorAes \| null;\n lineColor: ColorAes;\n barsOpacity: number;\n areaOpacity: number;\n normalize: boolean;\n height: 'sum' \| 'max' \| 'mean' \| 'median';\n showBars: boolean;\n };\n line: {\n pointsValues: 'mean' \| 'median';\n emptyGroupValue: number;\n lineColor: ColorAes \| null;\n dotShape: DotShapeAes;\n lineType: LineTypeAes;\n dotFill: ColorAes \| null;\n opacity: number;\n };\n errorbar: {\n pointsValues: 'mean' \| 'median';\n interval: 'sd' \| 'se' \| '';\n lineColor: ColorAes \| null;\n dotShape: DotShapeAes;\n dotFill: ColorAes \| null;\n opacity: number;\n };\n sina: {\n dotFill: ColorAes \| null;\n dotShape: DotShapeAes;\n opacity: number;\n showOutliers: boolean;\n };\n logo: {\n normalize: boolean;\n opacity: number;\n };\n};\nexport const DEFAULT_LAYERS_SETTINGS: () => LayersSettings = () => ({\n // bubble\n bubble: {\n NAValueAs: 0,\n strokeColor: null,\n minRadius: 3,\n maxRadius: 38,\n normalizationDirection: 'row',\n normalizationMethod: 'standardScaling',\n aggregateByX: false,\n aggregateByY: false,\n aggregationMethod: 'mean',\n },\n // histogram\n bins: {\n fillColor: null,\n opacity: 1,\n },\n // dendro\n dendro: {\n dotFill: DEFAULT_BLACK,\n dotShape: DEFAULT_DOT_SHAPE,\n dotSize: DEFAULT_DOT_SIZE,\n lineColor: DEFAULT_BLACK,\n mode: 'normal',\n leavesMode: 'normal',\n showTable: false,\n showLegend: true,\n },\n // heatmap\n heatmap: {\n NAValueAs: 0,\n normalizationDirection: 'row',\n normalizationMethod: 'standardScaling',\n aggregateByX: false,\n aggregateByY: false,\n aggregationMethod: 'mean',\n },\n heatmapClustered: {\n NAValueAs: 0,\n normalizationDirection: 'row',\n normalizationMethod: 'standardScaling',\n dendrogramX: true,\n dendrogramY: true,\n disableClusteringX: false,\n disableClusteringY: false,\n aggregateByX: false,\n aggregateByY: false,\n aggregationMethod: 'mean',\n },\n // scatterplot\n dots: {\n dotFill: null as ColorAes \| null,\n dotShape: null as DotShapeAes \| null,\n dotSize: null as ContinuousDataMappingSize \| number \| null,\n },\n curve: { lineColor: DEFAULT_BLACK, smoothing: true },\n // discrete\n box: {\n showOutliers: true,\n fillColor: null as ColorAes \| null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n gapWidth: 0.2,\n opacity: 1,\n stat: {\n low: 0.25,\n middle: 0.5,\n upper: 0.75,\n k: 1.5,\n },\n },\n binnedDots: {\n fillColor: null as ColorAes \| null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n showOutliers: true,\n },\n jitteredDots: {\n dotFill: null as ColorAes \| null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n showOutliers: true,\n },\n violin: {\n fillColor: null as ColorAes \| null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n opacity: 1,\n trim: false,\n showQuartiles: false,\n quartilesLineStyle: 'dashed',\n medianLineStyle: 'solid',\n },\n bar: {\n fillColor: null as ColorAes \| null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n height: 'max',\n },\n stackedBar: {\n fillColor: null as ColorAes \| null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n normalize: false,\n height: 'sum',\n },\n stackedArea: {\n fillColor: null as ColorAes \| null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n barsOpacity: 1,\n areaOpacity: 0.7,\n normalize: false,\n showBars: true,\n height: 'sum',\n },\n line: {\n pointsValues: 'mean',\n emptyGroupValue: 0,\n lineColor: null as ColorAes \| null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n dotFill: null as ColorAes \| null,\n opacity: 1,\n },\n errorbar: {\n pointsValues: 'mean',\n interval: 'sd',\n lineColor: null as ColorAes \| null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n dotFill: null as ColorAes \| null,\n opacity: 1,\n },\n sina: {\n dotFill: null as ColorAes \| null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n opacity: 1,\n showOutliers: true,\n },\n logo: {\n normalize: false,\n opacity: 1,\n },\n});\n\nexport function getDefaultLayersSettings() {\n return DEFAULT_LAYERS_SETTINGS();\n}\n\nconst DISCRETE_LAYERS: Layer[] = [\n 'box',\n 'binnedDots',\n 'jitteredDots',\n 'violin',\n 'bar',\n 'stackedBar',\n 'line',\n 'errorbar',\n 'sina',\n 'logo',\n];\nconst SCATTERPLOT_LAYERS: Layer[] = ['dots', 'curve'];\nconst SCATTERPLOT_UMAP_LAYERS: Layer[] = ['dots'];\nconst HEATMAP_LAYERS: Layer[] = ['heatmap', 'heatmapClustered'];\nconst DENDRO_LAYERS: Layer[] = ['dendro'];\nconst HISTOGRAM_LAYERS: Layer[] = ['bins'];\nconst BUBBLE_LAYERS: Layer[] = ['bubble'];\nconst _LAYERS_BY_CHART_TYPE: Record<ChartType, Layer[]> = {\n 'discrete': DISCRETE_LAYERS,\n 'scatterplot': SCATTERPLOT_LAYERS,\n 'scatterplot-umap': SCATTERPLOT_UMAP_LAYERS,\n 'heatmap': HEATMAP_LAYERS,\n 'dendro': DENDRO_LAYERS,\n 'histogram': HISTOGRAM_LAYERS,\n 'bubble': BUBBLE_LAYERS,\n};\n\nexport function getInitialLayersSettings(\n initialSettings?: DeepPartial<LayersSettings>,\n): LayersSettings {\n const defaultSettings = DEFAULT_LAYERS_SETTINGS();\n const layers: Layer[] = Object.keys(defaultSettings) as Layer[];\n return layers.reduce((res, layer) => {\n Object.assign(\n res[layer],\n initialSettings?.[layer] ?? {},\n );\n return res;\n }, defaultSettings);\n}\n\nexport type Sorting = 'asc' \| 'desc';\nexport type AxesState = {\n title: { value: string; position: TitlePosition; mode: AxisTitleMode; facetTitleFrame: Frame };\n axisX: {\n labelsPosition: LabelsPosition; // for heatmap - top/bottom/left/right/hidden\n labelsRotation: LabelsRotation \| null; // only for discrete X axis - 'center'/'90deg'/'45deg'; null for auto mode before user chose\n axisLabelsAngle: 0 \| 45 \| 90; // for heatmap\n groupLabelsAngle: 0 \| 45 \| 90; // for heatmap\n titleMode: AxisTitleMode; // 'auto' - from column or 'custom' - from 'customTitle' field or 'hidden'\n customTitle: string; // user axis title, not default from column\n gridlines: boolean;\n linesBetweenCategories: boolean; // for discrete - position for vertical gridlines\n ticks: boolean;\n scale: Scale; // linear or log\n significantLinesStyle: LineType;\n sorting: Sorting;\n allowNullPrimaryGroups: boolean; // for discrete - allow group with null grouping value\n allowNullSecondaryGroups: boolean;\n order: {\n source: string;\n options: { value: string; label: string }[];\n } \| null;\n cellSize: number \| null;\n annotationTitlePosition: 'left' \| 'right' \| 'hidden';\n hideAxisLabels: boolean;\n hideAxisGroupLabels: boolean;\n };\n axisY: {\n labelsRotation: LabelsRotation \| null; // only for discrete X axis - 'center'/'90deg'/'45deg'; null for auto mode before user chose\n titleMode: AxisTitleMode;\n customTitle: string;\n axisLabelsAngle: 0 \| 45 \| 90; // for heatmap\n groupLabelsAngle: 0 \| 45 \| 90; // for heatmap\n gridlines: boolean;\n ticks: boolean;\n scale: Scale;\n significantLinesStyle: LineType;\n sorting: Sorting;\n order: {\n source: string;\n options: { value: string; label: string }[];\n } \| null;\n cellSize: number \| null;\n annotationTitlePosition: 'top' \| 'bottom' \| 'hidden';\n hideAxisLabels: boolean;\n hideAxisGroupLabels: boolean;\n };\n legend: { show?: boolean };\n other: {\n frame: Frame \| HeatmapFrame;\n reverse: boolean;\n facetSharedBy: 'x' \| 'y' \| 'xy' \| 'none';\n facetColumns: number;\n binsCount: number;\n groupingDirection: 'straight' \| 'reverse';\n groupingStack: 'vertical' \| 'horizontal';\n canvasRenderMode: boolean;\n showLegend: boolean;\n };\n};\n\nconst DEFAULT_AXES: () => AxesState = () => ({\n title: {\n value: 'Graph 1',\n position: 'center',\n mode: 'auto',\n facetTitleFrame: 'full',\n },\n axisX: {\n labelsPosition: 'bottom',\n labelsRotation: null,\n axisLabelsAngle: 90,\n groupLabelsAngle: 45,\n titleMode: 'auto',\n customTitle: '',\n gridlines: true,\n linesBetweenCategories: true,\n ticks: true,\n scale: 'linear',\n significantLinesStyle: 'dashed',\n sorting: 'asc',\n allowNullPrimaryGroups: false,\n allowNullSecondaryGroups: false,\n order: null,\n cellSize: null,\n annotationTitlePosition: 'right',\n hideAxisLabels: false,\n hideAxisGroupLabels: false,\n },\n axisY: {\n labelsRotation: null,\n titleMode: 'auto',\n customTitle: '',\n axisLabelsAngle: 90,\n groupLabelsAngle: 45,\n gridlines: true,\n ticks: true,\n scale: 'linear',\n significantLinesStyle: 'dashed',\n sorting: 'asc',\n order: null,\n cellSize: null,\n annotationTitlePosition: 'top',\n hideAxisLabels: false,\n hideAxisGroupLabels: false,\n },\n legend: {},\n other: {\n frame: 'full',\n reverse: false,\n canvasRenderMode: false,\n facetSharedBy: 'xy',\n facetColumns: 3,\n binsCount: 10,\n groupingDirection: 'straight',\n groupingStack: 'vertical',\n showLegend: true,\n },\n});\n\nfunction isHeatmapFrame(frame: Frame \| HeatmapFrame): frame is HeatmapFrame {\n return frame === 'full' \|\| frame === 'none';\n}\n\nexport function getInitialAxesSettings(\n chartType: ChartType,\n initialAxesSettings?: DeepPartial<AxesState>,\n): AxesState {\n const defaultAxes = DEFAULT_AXES();\n if (!initialAxesSettings) {\n return defaultAxes;\n }\n\n // TODO: divide into separated settings for chart types\n function getFrame(frame?: Frame \| HeatmapFrame): Frame \| HeatmapFrame {\n if (!frame) {\n return 'full';\n }\n if (chartType === 'heatmap' && !isHeatmapFrame(frame)) {\n return 'full' as HeatmapFrame;\n }\n if (chartType !== 'heatmap' && isHeatmapFrame(frame)) {\n return frame === 'none' ? 'empty' : (frame as Frame);\n }\n return frame;\n }\n\n return {\n title: {\n ...defaultAxes.title,\n ...initialAxesSettings.title,\n },\n axisX: {\n ...defaultAxes.axisX,\n ...initialAxesSettings.axisX,\n },\n axisY: {\n ...defaultAxes.axisY,\n ...initialAxesSettings.axisY,\n },\n legend: {\n ...defaultAxes.legend,\n ...initialAxesSettings.legend,\n },\n other: {\n ...defaultAxes.other,\n ...initialAxesSettings.other,\n frame: getFrame(initialAxesSettings.other?.frame),\n },\n };\n}\n\nexport const LAYER_ICONS: Record<LayersTemplate, Component> = {\n box: BoxplotIcon,\n box_binnedDots: BoxplotAndBinnedIcon,\n box_jitteredDots: BoxplotAndJitterIcon,\n binnedDots: BinnedDotsIcon,\n jitteredDots: JitteredDotsIcon,\n violin: ViolinIcon,\n violin_binnedDots: ViolinAndBinnedIcon,\n violin_jitteredDots: ViolinAndJitterIcon,\n bar: BarIcon,\n bar_line: BarAndLineIcon,\n bar_errorbar: BarAndErrorIcon,\n stackedBar: StackedBarIcon,\n stackedArea: StackedAreaIcon,\n line: LineIcon,\n line_binnedDots: LineAndBinnedIcon,\n line_jitteredDots: LineAndJitterIcon,\n line_errorbar: LineAndErrorbarIcon,\n errorbar: BarAndLineIcon,\n sina: SinaIcon,\n logo: LogoIcon,\n dots: ScatterplotIcon,\n curve: LineIcon,\n curve_dots: LineAndJitterIcon,\n heatmap: HeatmapIcon,\n heatmapClustered: DendroIcon,\n dendro: DendroIcon,\n bins: BarIcon,\n bubble: HeatmapIcon,\n};\n\ntype Option = { value: string; text: string };\nexport const STAT_TEST_METHOD: Option[] = [\n { value: 'ttest', text: 'TTest' },\n { value: 'anova', text: 'ANOVA' },\n { value: 'wilcoxon', text: 'Wilcoxon' },\n { value: 'kruskalWallis', text: 'Kruskal-Wallis' },\n];\n\nexport const STAT_CORRECTION_METHOD: Option[] = [\n { value: 'BenjaminiHochberg', text: 'Benjamini-Hochberg' },\n { value: 'BenjaminiYekutieli', text: 'Benjamini-Yekutieli' },\n { value: 'Bonferroni', text: 'Bonferroni' },\n { value: 'Hochberg', text: 'Hochberg' },\n { value: 'Holm', text: 'Holm' },\n { value: 'Hommel', text: 'Hommel' },\n { value: 'none', text: 'None' },\n];\n\nexport const FORMAT_P_VALUE_OPTIONS: Option[] = [\n { value: 'pValue', text: 'p-value' },\n { value: 'significance', text: 'significance' },\n];\n\nexport type AesType = 'fill' \| 'stroke' \| 'dotShape' \| 'lineType' \| 'size';\n\nexport const DEFAULT_WIDTH = 600;\nexport const DEFAULT_HEIGHT = 350;\nexport const DEFAULT_WIDTH_SMALL = 400;\nexport const DEFAULT_HEIGHT_SMALL = 250;\n\nexport const MAX_SEARCH_OPTIONS_LIST_LENGTH = 100;\n\nexport const AGGREGATION_METHOD_OPTIONS: Option[] = [\n { value: 'sum', text: 'Sum' },\n { value: 'mean', text: 'Mean' },\n { value: 'median', text: 'Median' },\n { value: 'min', text: 'Min' },\n { value: 'max', text: 'Max' 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