npm - @milaboratories/graph-maker - Versions diffs - 1.1.182 → 1.1.183 - Mend

@milaboratories/graph-maker 1.1.182 → 1.1.183

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (30) hide show

package/dist/utils/createChartSettingsForRender/getLayersDataFromForms.js CHANGED Viewed

@@ -1,6 +1,6 @@
 import { isContinuousDataMapping as w } from "../../constantsCommon.js";
-import { AMINOACID_COLOR_MAPPING as L, NUCLEOTIDE_COLOR_MAPPING as b, PALETTE_MAP as A, DEFAULT_BLACK as M, DEFAULT_CONTINUOUS_PALETTE as F, DEFAULT_DOT_SHAPE as I } from "../../constantsAesthetic.js";
-import { DEFAULT_DOT_SIZE as V, DEFAULT_DOT_RANGE as _, isAestheticMappingContinuous as P, createContinuousMappingFromPalette as N } from "../../dataBindAes.js";
+import { AMINOACID_COLOR_MAPPING as L, NUCLEOTIDE_COLOR_MAPPING as A, PALETTE_MAP as b, DEFAULT_BLACK as v, DEFAULT_CONTINUOUS_PALETTE as F, DEFAULT_DOT_SHAPE as I } from "../../constantsAesthetic.js";
+import { DEFAULT_DOT_SIZE as _, DEFAULT_DOT_RANGE as P, isAestheticMappingContinuous as N, createContinuousMappingFromPalette as V } from "../../dataBindAes.js";
 function x(t) {
   const r = [];
   if (t.overall.data.testMethod && t.overall.validity.testMethod && r.push({
@@ -8,7 +8,7 @@ function x(t) {
     statType: "overall",
     testMethod: t.overall.data.testMethod
   }), t.referenceGroup.data.testMethod && t.referenceGroup.validity.testMethod && t.referenceGroup.validity.referenceGroup) {
-    const c = {
+    const u = {
       type: "stat",
       statType: "referenceGroup",
       testMethod: t.referenceGroup.data.testMethod,
@@ -16,24 +16,24 @@ function x(t) {
       format: t.referenceGroup.data.format,
       ns: t.referenceGroup.data.ns
     };
-    t.referenceGroup.data.correctionMethod !== "none" && (c.correctionMethod = t.referenceGroup.data.correctionMethod), r.push(c);
+    t.referenceGroup.data.correctionMethod !== "none" && (u.correctionMethod = t.referenceGroup.data.correctionMethod), r.push(u);
   }
   if (t.pairwise.data.testMethod && t.pairwise.validity.testMethod) {
-    const c = {
+    const u = {
       type: "stat",
       statType: "pairwise",
       testMethod: t.pairwise.data.testMethod,
       format: t.pairwise.data.format,
       ns: t.pairwise.data.ns
     };
-    t.referenceGroup.data.correctionMethod !== "none" && (c.correctionMethod = t.referenceGroup.data.correctionMethod), r.push(c);
+    t.referenceGroup.data.correctionMethod !== "none" && (u.correctionMethod = t.referenceGroup.data.correctionMethod), r.push(u);
   }
   return r;
 }
-function B(t, r, c, d, f) {
-  const n = [], h = d.components.primaryGrouping.selectorStates.length > 0, p = d.components.secondaryGrouping.selectorStates.length > 0;
+function B(t, r, u, f, d) {
+  const n = [], h = f.components.primaryGrouping.selectorStates.length > 0, s = f.components.secondaryGrouping.selectorStates.length > 0;
   function i(o, l = !1) {
-    return o === null ? p ? { type: "secondaryGrouping" } : h && !l ? { type: "primaryGrouping" } : { type: "secondaryGrouping" } : o;
+    return o === null ? s ? { type: "secondaryGrouping" } : h && !l ? { type: "primaryGrouping" } : { type: "secondaryGrouping" } : o;
   }
   return t.forEach((o) => {
     var l;
@@ -174,88 +174,85 @@ function B(t, r, c, d, f) {
         }
       });
     }
-    if (o === "logo" && p) {
-      const e = r[o], y = ((l = f.getSourceInfo(d.components.secondaryGrouping.selectorStates[0].selectedSource).spec.domain) == null ? void 0 : l["pl7.app/alphabet"]) === "aminoacid";
+    if (o === "logo" && s) {
+      const e = r[o], y = ((l = d.getSourceInfo(f.components.secondaryGrouping.selectorStates[0].selectedSource).spec.domain) == null ? void 0 : l["pl7.app/alphabet"]) === "aminoacid";
       n.push({
         type: "logo",
         normalize: e.normalize,
         aes: {
           opacity: e.opacity,
-          dotFill: y ? L : b
+          dotFill: y ? L : A
         }
       });
     }
-  }), h && !p && n.push(...x(c)), n;
+  }), h && !s && n.push(...x(u)), n;
 }
-function z(t, r, c, d) {
+function z(t, r, u, f) {
   if (t) {
-    const f = w(r) ? r : { column: t.value, range: _ }, n = [1 / 0, -1 / 0];
-    return c.values[t.value].forEach((h) => {
-      const p = Number(h);
-      p < n[0] && (n[0] = p), p > n[1] && (n[1] = p);
-    }), { columnName: t, domain: n, range: [f.range.min, f.range.max] };
+    const d = w(r) ? r : { column: t.value, range: P }, n = [1 / 0, -1 / 0];
+    return u.values[t.value].forEach((h) => {
+      const s = Number(h);
+      s < n[0] && (n[0] = s), s > n[1] && (n[1] = s);
+    }), { columnName: t, domain: n, range: [d.range.min, d.range.max] };
   }
-  return w(r) ? d : r ?? d;
+  return w(r) ? f : r ?? f;
 }
-function D(t, r, c, d) {
-  const f = c.find((n) => n.value === t);
-  if (f) {
-    console.log("column", f), console.log("value", r);
-    const { range: n, palette: h, midPoint: p, log: i } = r;
+function D(t, r, u, f) {
+  const d = u.find((n) => n.value === t);
+  if (d) {
+    const { range: n, palette: h, midPoint: s, log: i } = r;
     let { minValue: o, maxValue: l } = n ?? {}, e = !1;
-    const m = o == null, y = l == null;
-    console.log("minValueMissed", m), console.log("maxValueMissed", y);
-    const u = [1 / 0, -1 / 0];
-    (m || y) && (d.values[f.value].forEach((s) => {
-      const g = Number(s);
-      g < u[0] && (u[0] = g), g > u[1] && (u[1] = g);
-    }), console.log("bounds", u)), m && y ? (o = u[0], l = u[1]) : m ? o = l > u[0] ? u[0] : u[1] : y && (l = o < u[1] ? u[1] : u[0]), console.log("minValue", o, "maxValue", l), o != null && l !== null && l !== void 0 && o > l && (e = !0, [o, l] = [l, o]);
+    const m = o == null, y = l == null, c = [1 / 0, -1 / 0];
+    (m || y) && f.values[d.value].forEach((p) => {
+      const g = Number(p);
+      g < c[0] && (c[0] = g), g > c[1] && (c[1] = g);
+    }), m && y ? (o = c[0], l = c[1]) : m ? o = l > c[0] ? c[0] : c[1] : y && (l = o < c[1] ? c[1] : c[0]), o != null && l !== null && l !== void 0 && o > l && (e = !0, [o, l] = [l, o]);
     const C = [o, l];
-    if (p != null) {
-      const s = Math.max(Math.abs(p - o), Math.abs(p - l));
-      C[0] = p - s, C[1] = p + s;
+    if (s != null) {
+      const p = Math.max(Math.abs(s - o), Math.abs(s - l));
+      C[0] = s - p, C[1] = s + p;
     }
-    const a = [...A[h].colors];
+    const a = [...b[h].colors];
     return e && a.reverse(), {
-      columnName: f,
+      columnName: d,
       domain: C,
       range: a,
       type: i ? "log" : "linear"
     };
   }
-  return M;
+  return v;
 }
-function R(t, r, c, d, f, n, h = [], p = V) {
-  var u, C;
+function R(t, r, u, f, d, n, h = [], s = _) {
+  var c, C;
   const i = [];
-  function o(a, s, g, v = !1) {
+  function o(a, p, g, M = !1) {
     var G;
-    if (s.length) {
-      const O = s.length ? (G = n.getSourceInfo(s[0])) == null ? void 0 : G.type : void 0, E = O === "String" || !v ? { type: "grouping", value: s[0] } : D(s[0], N(F), h, c), T = f[s[0]];
-      return a === null || O === "String" || !v || !P(T) ? E : D(s[0], T, h, c);
+    if (p.length) {
+      const O = p.length ? (G = n.getSourceInfo(p[0])) == null ? void 0 : G.type : void 0, E = O === "String" || !M ? { type: "grouping", value: p[0] } : D(p[0], V(F), h, u), T = d[p[0]];
+      return a === null || O === "String" || !M || !N(T) ? E : D(p[0], T, h, u);
     }
     return typeof a == "object" ? g : a;
   }
-  const l = d.components.grouping.selectorStates.map((a) => a.selectedSource), e = ((u = d.components.shape) == null ? void 0 : u.selectorStates.map((a) => a.selectedSource)) ?? [], m = (C = d.components.size) == null ? void 0 : C.selectorStates.map((a) => a.selectedSource)[0], y = m ? h.find((a) => a.value === m) : void 0;
+  const l = f.components.grouping.selectorStates.map((a) => a.selectedSource), e = ((c = f.components.shape) == null ? void 0 : c.selectorStates.map((a) => a.selectedSource)) ?? [], m = (C = f.components.size) == null ? void 0 : C.selectorStates.map((a) => a.selectedSource)[0], y = m ? h.find((a) => a.value === m) : void 0;
   return t.forEach((a) => {
     if (a === "dots") {
-      const s = r[a];
+      const p = r[a];
       i.push({
         type: "dots",
         aes: {
-          dotFill: o(s.dotFill, l, M, !0),
-          dotShape: o(s.dotShape, e, I),
-          dotSize: z(y, s.dotSize, c, p)
+          dotFill: o(p.dotFill, l, v, !0),
+          dotShape: o(p.dotShape, e, I),
+          dotSize: z(y, p.dotSize, u, s)
         }
       });
     }
     if (a === "curve") {
-      const s = r[a];
+      const p = r[a];
       i.push({
         type: "curve",
-        smoothing: s.smoothing,
+        smoothing: p.smoothing,
         aes: {
-          lineColor: o(s.lineColor, l, M, !0)
+          lineColor: o(p.lineColor, l, v, !0)
         }
       });
     }

package/dist/utils/createChartSettingsForRender/getLayersDataFromForms.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"getLayersDataFromForms.js","sources":["../../../src/utils/createChartSettingsForRender/getLayersDataFromForms.ts"],"sourcesContent":["import type {\n ColorAes,\n getDefaultLayersSettings,\n NumberRange,\n LayersSettings,\n MappingLink,\n DiscreteStatisticsState,\n ColumnNameSchema,\n ContinuousDataMappingSize,\n ContinuousDataMappingForGraph,\n} from '../../constantsCommon';\nimport {\n isContinuousDataMapping,\n} from '../../constantsCommon';\nimport type {\n Layer,\n ReactiveState,\n} from '../../types';\nimport type {\n DiscreteUIState, InputGuide,\n InputState,\n PlotDataAndSettings,\n ScatterplotUIState,\n} from '@milaboratories/pf-plots';\nimport type { DotShape, LineType } from '../../components/AesSettings/types';\nimport {\n AMINOACID_COLOR_MAPPING,\n DEFAULT_BLACK,\n DEFAULT_CONTINUOUS_PALETTE,\n DEFAULT_DOT_SHAPE, NUCLEOTIDE_COLOR_MAPPING,\n PALETTE_MAP,\n} from '../../constantsAesthetic';\nimport type {\n AestheticMappingContinuous } from '../../dataBindAes';\nimport { createContinuousMappingFromPalette,\n DEFAULT_DOT_RANGE,\n DEFAULT_DOT_SIZE,\n} from '../../dataBindAes';\nimport type { ScatterplotSettings } from '@milaboratories/miplots4';\nimport { isAestheticMappingContinuous } from '../../dataBindAes';\n\nexport function getStatLayers(statisticsSettings: DiscreteStatisticsState) {\n const layers: ChartLayerSettings[] = [];\n if (\n statisticsSettings.overall.data.testMethod\n && statisticsSettings.overall.validity.testMethod\n ) {\n layers.push({\n type: 'stat',\n statType: 'overall',\n testMethod: statisticsSettings.overall.data.testMethod,\n });\n }\n if (\n statisticsSettings.referenceGroup.data.testMethod\n && statisticsSettings.referenceGroup.validity.testMethod\n && statisticsSettings.referenceGroup.validity.referenceGroup\n ) {\n const layer: ChartLayerSettings = {\n type: 'stat',\n statType: 'referenceGroup',\n testMethod: statisticsSettings.referenceGroup.data.testMethod,\n referenceGroup: statisticsSettings.referenceGroup.data.referenceGroup,\n format: statisticsSettings.referenceGroup.data.format,\n ns: statisticsSettings.referenceGroup.data.ns,\n };\n if (statisticsSettings.referenceGroup.data.correctionMethod !== 'none') {\n layer.correctionMethod\n = statisticsSettings.referenceGroup.data.correctionMethod;\n }\n layers.push(layer);\n }\n if (\n statisticsSettings.pairwise.data.testMethod\n && statisticsSettings.pairwise.validity.testMethod\n ) {\n const layer: ChartLayerSettings = {\n type: 'stat',\n statType: 'pairwise',\n testMethod: statisticsSettings.pairwise.data.testMethod,\n format: statisticsSettings.pairwise.data.format,\n ns: statisticsSettings.pairwise.data.ns,\n };\n if (statisticsSettings.referenceGroup.data.correctionMethod !== 'none') {\n layer.correctionMethod\n = statisticsSettings.referenceGroup.data.correctionMethod;\n }\n layers.push(layer);\n }\n return layers;\n}\n\nexport function getDiscreteLayersSettings(\n layers: Layer[],\n layerSettings: LayersSettings,\n statisticsSettings: DiscreteStatisticsState,\n optionsState: DiscreteUIState,\n inputGuide: InputGuide<InputState>,\n): ChartLayerSettings[] {\n const result: ChartLayerSettings[] = [];\n const hasPrimaryGrouping\n = optionsState.components.primaryGrouping.selectorStates.length > 0;\n const hasSecondaryGrouping\n = optionsState.components.secondaryGrouping.selectorStates.length > 0;\n // If user didn't touch layers settings, some aes that can be mapped to groupings has 'null' value - we set them to secondary or primary grouping if available\n // for 'line', 'errorbar' layer it isn't possible to set primary grouping as a color aes\n function useDefaultColor(\n value: ColorAes \| null,\n onlySecondaryAvailable = false,\n ) {\n if (value === null) {\n if (hasSecondaryGrouping) {\n return { type: 'secondaryGrouping' };\n }\n if (hasPrimaryGrouping && !onlySecondaryAvailable) {\n return { type: 'primaryGrouping' };\n }\n return { type: 'secondaryGrouping' };\n }\n return value;\n }\n\n layers.forEach((layer) => {\n if (layer === 'box') {\n const settings = layerSettings[layer];\n result.push({\n type: 'box',\n aes: {\n showOutliers: settings.showOutliers,\n dotShape: settings.dotShape,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n lineShape: settings.lineType,\n opacity: settings.opacity,\n },\n });\n }\n if (layer === 'binnedDots') {\n const settings = layerSettings[layer];\n result.push({\n type: 'binnedDots',\n aes: {\n showOutliers: settings.showOutliers,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity,\n },\n });\n }\n if (layer === 'jitteredDots') {\n const settings = layerSettings[layer];\n result.push({\n type: 'dot',\n aes: {\n showOutliers: settings.showOutliers,\n dotFill: useDefaultColor(settings.dotFill),\n dotShape: settings.dotShape,\n lineColor: settings.lineColor,\n opacity: settings.opacity,\n },\n });\n }\n if (layer === 'violin') {\n const settings = layerSettings[layer];\n result.push({\n type: 'violin',\n stat: {\n trim: settings.trim,\n },\n aes: {\n showQuartiles: settings.showQuartiles,\n medianLineStyle: settings.medianLineStyle,\n quartilesLineStyle: settings.quartilesLineStyle,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n lineShape: settings.lineType,\n opacity: settings.opacity,\n },\n });\n }\n if (layer === 'bar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'bar',\n height: settings.height,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity,\n },\n });\n }\n if (layer === 'stackedBar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'stackedBar',\n normalize: settings.normalize,\n height: settings.height,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity,\n },\n });\n }\n if (layer === 'stackedArea') {\n const settings = layerSettings[layer];\n result.push({\n type: 'stackedArea',\n normalize: settings.normalize,\n showBars: settings.showBars,\n height: settings.height,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n barsOpacity: settings.barsOpacity,\n areaOpacity: settings.areaOpacity,\n },\n });\n }\n if (layer === 'line') {\n const settings = layerSettings[layer];\n result.push({\n type: 'line',\n pointsValues: settings.pointsValues,\n emptyGroupValue: settings.emptyGroupValue ?? 0,\n aes: {\n lineColor: useDefaultColor(settings.lineColor, true),\n fillColor: useDefaultColor(settings.dotFill, true),\n lineShape: settings.lineType,\n dotShape: settings.dotShape,\n opacity: settings.opacity,\n },\n });\n }\n if (layer === 'errorbar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'errorbar',\n pointsValues: settings.pointsValues,\n interval: settings.interval,\n aes: {\n lineColor: useDefaultColor(settings.lineColor, true),\n fillColor: useDefaultColor(settings.dotFill, true),\n dotShape: settings.dotShape,\n opacity: settings.opacity,\n },\n });\n }\n if (layer === 'sina') {\n const settings = layerSettings[layer];\n result.push({\n type: 'sina',\n aes: {\n showOutliers: settings.showOutliers,\n dotFill: useDefaultColor(settings.dotFill),\n dotShape: settings.dotShape,\n },\n });\n }\n if (layer === 'logo' && hasSecondaryGrouping) {\n const settings = layerSettings[layer];\n const secondaryGroupingInfo = inputGuide.getSourceInfo(optionsState.components.secondaryGrouping.selectorStates[0].selectedSource);\n const isProtein = secondaryGroupingInfo.spec.domain?.['pl7.app/alphabet'] === 'aminoacid';\n result.push({\n type: 'logo',\n normalize: settings.normalize,\n aes: {\n opacity: settings.opacity,\n dotFill: isProtein ? AMINOACID_COLOR_MAPPING : NUCLEOTIDE_COLOR_MAPPING,\n },\n });\n }\n });\n if (hasPrimaryGrouping && !hasSecondaryGrouping) {\n result.push(...getStatLayers(statisticsSettings));\n }\n return result;\n}\n\nfunction getDotSize(\n column: ColumnNameSchema \| undefined,\n dotSize: ContinuousDataMappingSize \| number \| null,\n dataByColumns: PlotDataAndSettings['data']['byColumns'],\n defaultDotSize: number,\n): number \| { columnName: ColumnNameSchema; domain: number[]; range: number[] } {\n if (column) {\n const mapping = isContinuousDataMapping(dotSize) ? dotSize : { column: column.value, range: DEFAULT_DOT_RANGE };\n const domain = [Infinity, -Infinity];\n dataByColumns.values[column.value].forEach((v) => {\n const value = Number(v);\n if (value < domain[0]) {\n domain[0] = value;\n }\n if (value > domain[1]) {\n domain[1] = value;\n }\n });\n return { columnName: column, domain, range: [mapping.range.min, mapping.range.max] };\n }\n return isContinuousDataMapping(dotSize) ? defaultDotSize : dotSize ?? defaultDotSize;\n}\n\nfunction getContinuousColor<T extends string>(\n columnKey: string,\n value: AestheticMappingContinuous,\n groupingColumns: ColumnNameSchema[],\n dataByColumns: PlotDataAndSettings['data']['byColumns'],\n): T \| ContinuousDataMappingForGraph<T> {\n const column = groupingColumns.find((groupingColumn) => groupingColumn.value === columnKey);\n if (column) {\n console.log('column', column);\n console.log('value', value);\n const { range, palette, midPoint, log } = value;\n let { minValue, maxValue } = range ?? {};\n let inverted = false;\n\n const minValueMissed = minValue === null \|\| minValue === undefined;\n const maxValueMissed = maxValue === null \|\| maxValue === undefined;\n\n console.log('minValueMissed', minValueMissed);\n console.log('maxValueMissed', maxValueMissed);\n const bounds = [Infinity, -Infinity];\n if (minValueMissed \|\| maxValueMissed) {\n dataByColumns.values[column.value].forEach((v) => {\n const value = Number(v);\n if (value < bounds[0]) {\n bounds[0] = value;\n }\n if (value > bounds[1]) {\n bounds[1] = value;\n }\n });\n console.log('bounds', bounds);\n }\n if (minValueMissed && maxValueMissed) {\n minValue = bounds[0];\n maxValue = bounds[1];\n } else if (minValueMissed) {\n minValue = (maxValue as number) > bounds[0] ? bounds[0] : bounds[1];\n } else if (maxValueMissed) {\n maxValue = (minValue as number) < bounds[1] ? bounds[1] : bounds[0];\n }\n console.log('minValue', minValue, 'maxValue', maxValue);\n if (minValue !== null && minValue !== undefined && maxValue !== null && maxValue !== undefined && minValue > maxValue) {\n inverted = true;\n [minValue, maxValue] = [maxValue, minValue];\n }\n const domain = [minValue as number, maxValue as number];\n if (midPoint !== null && midPoint !== undefined) {\n const maxDistance = Math.max(Math.abs(midPoint - (minValue as number)), Math.abs(midPoint - (maxValue as number)));\n domain[0] = midPoint - maxDistance;\n domain[1] = midPoint + maxDistance;\n }\n\n const colors = [...PALETTE_MAP[palette].colors];\n if (inverted) {\n colors.reverse();\n }\n return {\n columnName: column,\n domain,\n range: colors,\n type: log ? 'log' : 'linear',\n } as ContinuousDataMappingForGraph<T>;\n }\n return DEFAULT_BLACK as T;\n}\n\nexport function getScatterplotLayersSettings(\n layers: Layer[],\n layerSettings: ReturnType<typeof getDefaultLayersSettings>,\n dataByColumns: PlotDataAndSettings['data']['byColumns'],\n optionsState: ScatterplotUIState,\n dataBindAes: ReactiveState['dataBindAes'],\n inputGuide: InputGuide<InputState>,\n groupingSchema: ColumnNameSchema[] = [],\n defaultDotSize = DEFAULT_DOT_SIZE,\n): ScatterplotSettings['layers'] {\n const result: ScatterplotSettings['layers'] = [];\n\n function useDefault<T extends string>(value: T \| MappingLink \| null, columns: string[], defaultValue: T, continousAvailable = false): T \| {\n type: 'grouping';\n value: string;\n } \| ContinuousDataMappingForGraph<T> {\n if (columns.length) {\n const valueType = columns.length ? inputGuide.getSourceInfo(columns[0])?.type : undefined;\n const defaultByColumn = (valueType === 'String' \|\| !continousAvailable)\n ? { type: 'grouping', value: columns[0] } as { type: 'grouping'; value: string }\n : getContinuousColor<T>(columns[0], createContinuousMappingFromPalette(DEFAULT_CONTINUOUS_PALETTE), groupingSchema, dataByColumns);\n\n const savedMapping = dataBindAes[columns[0]];\n\n if (value === null \|\| (valueType === 'String' \|\| !continousAvailable) \|\| !isAestheticMappingContinuous(savedMapping)) {\n return defaultByColumn;\n }\n return getContinuousColor<T>(columns[0], savedMapping as AestheticMappingContinuous, groupingSchema, dataByColumns);\n }\n\n return typeof value === 'object' ? defaultValue : value as T;\n }\n\n const grouping = optionsState.components.grouping.selectorStates.map((s) => s.selectedSource);\n const shape = optionsState.components.shape?.selectorStates.map((s) => s.selectedSource) ?? [];\n const sizeKey = optionsState.components.size?.selectorStates.map((s) => s.selectedSource)[0];\n const sizeColumn = sizeKey ? groupingSchema.find((column) => column.value === sizeKey) : undefined;\n\n layers.forEach((layer) => {\n if (layer === 'dots') {\n const settings = layerSettings[layer];\n result.push({\n type: 'dots',\n aes: {\n dotFill: useDefault<string>(settings.dotFill, grouping, DEFAULT_BLACK, true) as string \| {\n type: 'grouping';\n value: string;\n } \| ContinuousDataMappingForGraph<string>,\n dotShape: useDefault<DotShape>(settings.dotShape, shape, DEFAULT_DOT_SHAPE) as {\n type: 'grouping';\n value: string;\n } \| DotShape,\n dotSize: getDotSize(sizeColumn, settings.dotSize, dataByColumns, defaultDotSize),\n },\n });\n }\n if (layer === 'curve') {\n const settings = layerSettings[layer];\n result.push({\n type: 'curve',\n smoothing: settings.smoothing,\n aes: {\n lineColor: useDefault<string>(settings.lineColor, grouping, DEFAULT_BLACK, true) as {\n type: 'grouping';\n value: string;\n } \| string,\n },\n });\n }\n });\n return result;\n}\n\nexport type ChartLayerSettings = {\n [key: string]: string \| number \| boolean \| null \| Record<string, string \| DotShape \| NumberRange \| {\n domain: number[];\n range: number[];\n } \| LineType \| boolean \| number \| MappingLink \| Record<string, string>> \| undefined;\n type: string;\n aes?: Record<string, string \| DotShape \| NumberRange \| {\n domain: number[];\n range: number[];\n } \| LineType \| boolean \| number \| MappingLink \| Record<string, 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1	+ {"version":3,"file":"getLayersDataFromForms.js","sources":["../../../src/utils/createChartSettingsForRender/getLayersDataFromForms.ts"],"sourcesContent":["import type {\n ColorAes,\n getDefaultLayersSettings,\n NumberRange,\n LayersSettings,\n MappingLink,\n DiscreteStatisticsState,\n ColumnNameSchema,\n ContinuousDataMappingSize,\n ContinuousDataMappingForGraph,\n} from '../../constantsCommon';\nimport {\n isContinuousDataMapping,\n} from '../../constantsCommon';\nimport type {\n Layer,\n ReactiveState,\n} from '../../types';\nimport type {\n DiscreteUIState, InputGuide,\n InputState,\n PlotDataAndSettings,\n ScatterplotUIState,\n} from '@milaboratories/pf-plots';\nimport type { DotShape, LineType } from '../../components/AesSettings/types';\nimport {\n AMINOACID_COLOR_MAPPING,\n DEFAULT_BLACK,\n DEFAULT_CONTINUOUS_PALETTE,\n DEFAULT_DOT_SHAPE, NUCLEOTIDE_COLOR_MAPPING,\n PALETTE_MAP,\n} from '../../constantsAesthetic';\nimport type {\n AestheticMappingContinuous } from '../../dataBindAes';\nimport { createContinuousMappingFromPalette,\n DEFAULT_DOT_RANGE,\n DEFAULT_DOT_SIZE,\n} from '../../dataBindAes';\nimport type { ScatterplotSettings } from '@milaboratories/miplots4';\nimport { isAestheticMappingContinuous } from '../../dataBindAes';\n\nexport function getStatLayers(statisticsSettings: DiscreteStatisticsState) {\n const layers: ChartLayerSettings[] = [];\n if (\n statisticsSettings.overall.data.testMethod\n && statisticsSettings.overall.validity.testMethod\n ) {\n layers.push({\n type: 'stat',\n statType: 'overall',\n testMethod: statisticsSettings.overall.data.testMethod,\n });\n }\n if (\n statisticsSettings.referenceGroup.data.testMethod\n && statisticsSettings.referenceGroup.validity.testMethod\n && statisticsSettings.referenceGroup.validity.referenceGroup\n ) {\n const layer: ChartLayerSettings = {\n type: 'stat',\n statType: 'referenceGroup',\n testMethod: statisticsSettings.referenceGroup.data.testMethod,\n referenceGroup: statisticsSettings.referenceGroup.data.referenceGroup,\n format: statisticsSettings.referenceGroup.data.format,\n ns: statisticsSettings.referenceGroup.data.ns,\n };\n if (statisticsSettings.referenceGroup.data.correctionMethod !== 'none') {\n layer.correctionMethod\n = statisticsSettings.referenceGroup.data.correctionMethod;\n }\n layers.push(layer);\n }\n if (\n statisticsSettings.pairwise.data.testMethod\n && statisticsSettings.pairwise.validity.testMethod\n ) {\n const layer: ChartLayerSettings = {\n type: 'stat',\n statType: 'pairwise',\n testMethod: statisticsSettings.pairwise.data.testMethod,\n format: statisticsSettings.pairwise.data.format,\n ns: statisticsSettings.pairwise.data.ns,\n };\n if (statisticsSettings.referenceGroup.data.correctionMethod !== 'none') {\n layer.correctionMethod\n = statisticsSettings.referenceGroup.data.correctionMethod;\n }\n layers.push(layer);\n }\n return layers;\n}\n\nexport function getDiscreteLayersSettings(\n layers: Layer[],\n layerSettings: LayersSettings,\n statisticsSettings: DiscreteStatisticsState,\n optionsState: DiscreteUIState,\n inputGuide: InputGuide<InputState>,\n): ChartLayerSettings[] {\n const result: ChartLayerSettings[] = [];\n const hasPrimaryGrouping\n = optionsState.components.primaryGrouping.selectorStates.length > 0;\n const hasSecondaryGrouping\n = optionsState.components.secondaryGrouping.selectorStates.length > 0;\n // If user didn't touch layers settings, some aes that can be mapped to groupings has 'null' value - we set them to secondary or primary grouping if available\n // for 'line', 'errorbar' layer it isn't possible to set primary grouping as a color aes\n function useDefaultColor(\n value: ColorAes \| null,\n onlySecondaryAvailable = false,\n ) {\n if (value === null) {\n if (hasSecondaryGrouping) {\n return { type: 'secondaryGrouping' };\n }\n if (hasPrimaryGrouping && !onlySecondaryAvailable) {\n return { type: 'primaryGrouping' };\n }\n return { type: 'secondaryGrouping' };\n }\n return value;\n }\n\n layers.forEach((layer) => {\n if (layer === 'box') {\n const settings = layerSettings[layer];\n result.push({\n type: 'box',\n aes: {\n showOutliers: settings.showOutliers,\n dotShape: settings.dotShape,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n lineShape: settings.lineType,\n opacity: settings.opacity,\n },\n });\n }\n if (layer === 'binnedDots') {\n const settings = layerSettings[layer];\n result.push({\n type: 'binnedDots',\n aes: {\n showOutliers: settings.showOutliers,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity,\n },\n });\n }\n if (layer === 'jitteredDots') {\n const settings = layerSettings[layer];\n result.push({\n type: 'dot',\n aes: {\n showOutliers: settings.showOutliers,\n dotFill: useDefaultColor(settings.dotFill),\n dotShape: settings.dotShape,\n lineColor: settings.lineColor,\n opacity: settings.opacity,\n },\n });\n }\n if (layer === 'violin') {\n const settings = layerSettings[layer];\n result.push({\n type: 'violin',\n stat: {\n trim: settings.trim,\n },\n aes: {\n showQuartiles: settings.showQuartiles,\n medianLineStyle: settings.medianLineStyle,\n quartilesLineStyle: settings.quartilesLineStyle,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n lineShape: settings.lineType,\n opacity: settings.opacity,\n },\n });\n }\n if (layer === 'bar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'bar',\n height: settings.height,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity,\n },\n });\n }\n if (layer === 'stackedBar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'stackedBar',\n normalize: settings.normalize,\n height: settings.height,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity,\n },\n });\n }\n if (layer === 'stackedArea') {\n const settings = layerSettings[layer];\n result.push({\n type: 'stackedArea',\n normalize: settings.normalize,\n showBars: settings.showBars,\n height: settings.height,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n barsOpacity: settings.barsOpacity,\n areaOpacity: settings.areaOpacity,\n },\n });\n }\n if (layer === 'line') {\n const settings = layerSettings[layer];\n result.push({\n type: 'line',\n pointsValues: settings.pointsValues,\n emptyGroupValue: settings.emptyGroupValue ?? 0,\n aes: {\n lineColor: useDefaultColor(settings.lineColor, true),\n fillColor: useDefaultColor(settings.dotFill, true),\n lineShape: settings.lineType,\n dotShape: settings.dotShape,\n opacity: settings.opacity,\n },\n });\n }\n if (layer === 'errorbar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'errorbar',\n pointsValues: settings.pointsValues,\n interval: settings.interval,\n aes: {\n lineColor: useDefaultColor(settings.lineColor, true),\n fillColor: useDefaultColor(settings.dotFill, true),\n dotShape: settings.dotShape,\n opacity: settings.opacity,\n },\n });\n }\n if (layer === 'sina') {\n const settings = layerSettings[layer];\n result.push({\n type: 'sina',\n aes: {\n showOutliers: settings.showOutliers,\n dotFill: useDefaultColor(settings.dotFill),\n dotShape: settings.dotShape,\n },\n });\n }\n if (layer === 'logo' && hasSecondaryGrouping) {\n const settings = layerSettings[layer];\n const secondaryGroupingInfo = inputGuide.getSourceInfo(optionsState.components.secondaryGrouping.selectorStates[0].selectedSource);\n const isProtein = secondaryGroupingInfo.spec.domain?.['pl7.app/alphabet'] === 'aminoacid';\n result.push({\n type: 'logo',\n normalize: settings.normalize,\n aes: {\n opacity: settings.opacity,\n dotFill: isProtein ? AMINOACID_COLOR_MAPPING : NUCLEOTIDE_COLOR_MAPPING,\n },\n });\n }\n });\n if (hasPrimaryGrouping && !hasSecondaryGrouping) {\n result.push(...getStatLayers(statisticsSettings));\n }\n return result;\n}\n\nfunction getDotSize(\n column: ColumnNameSchema \| undefined,\n dotSize: ContinuousDataMappingSize \| number \| null,\n dataByColumns: PlotDataAndSettings['data']['byColumns'],\n defaultDotSize: number,\n): number \| { columnName: ColumnNameSchema; domain: number[]; range: number[] } {\n if (column) {\n const mapping = isContinuousDataMapping(dotSize) ? dotSize : { column: column.value, range: DEFAULT_DOT_RANGE };\n const domain = [Infinity, -Infinity];\n dataByColumns.values[column.value].forEach((v) => {\n const value = Number(v);\n if (value < domain[0]) {\n domain[0] = value;\n }\n if (value > domain[1]) {\n domain[1] = value;\n }\n });\n return { columnName: column, domain, range: [mapping.range.min, mapping.range.max] };\n }\n return isContinuousDataMapping(dotSize) ? defaultDotSize : dotSize ?? defaultDotSize;\n}\n\nfunction getContinuousColor<T extends string>(\n columnKey: string,\n value: AestheticMappingContinuous,\n groupingColumns: ColumnNameSchema[],\n dataByColumns: PlotDataAndSettings['data']['byColumns'],\n): T \| ContinuousDataMappingForGraph<T> {\n const column = groupingColumns.find((groupingColumn) => groupingColumn.value === columnKey);\n if (column) {\n const { range, palette, midPoint, log } = value;\n let { minValue, maxValue } = range ?? {};\n let inverted = false;\n\n const minValueMissed = minValue === null \|\| minValue === undefined;\n const maxValueMissed = maxValue === null \|\| maxValue === undefined;\n\n const bounds = [Infinity, -Infinity];\n if (minValueMissed \|\| maxValueMissed) {\n dataByColumns.values[column.value].forEach((v) => {\n const value = Number(v);\n if (value < bounds[0]) {\n bounds[0] = value;\n }\n if (value > bounds[1]) {\n bounds[1] = value;\n }\n });\n }\n if (minValueMissed && maxValueMissed) {\n minValue = bounds[0];\n maxValue = bounds[1];\n } else if (minValueMissed) {\n minValue = (maxValue as number) > bounds[0] ? bounds[0] : bounds[1];\n } else if (maxValueMissed) {\n maxValue = (minValue as number) < bounds[1] ? bounds[1] : bounds[0];\n }\n if (minValue !== null && minValue !== undefined && maxValue !== null && maxValue !== undefined && minValue > maxValue) {\n inverted = true;\n [minValue, maxValue] = [maxValue, minValue];\n }\n const domain = [minValue as number, maxValue as number];\n if (midPoint !== null && midPoint !== undefined) {\n const maxDistance = Math.max(Math.abs(midPoint - (minValue as number)), Math.abs(midPoint - (maxValue as number)));\n domain[0] = midPoint - maxDistance;\n domain[1] = midPoint + maxDistance;\n }\n\n const colors = [...PALETTE_MAP[palette].colors];\n if (inverted) {\n colors.reverse();\n }\n return {\n columnName: column,\n domain,\n range: colors,\n type: log ? 'log' : 'linear',\n } as ContinuousDataMappingForGraph<T>;\n }\n return DEFAULT_BLACK as T;\n}\n\nexport function getScatterplotLayersSettings(\n layers: Layer[],\n layerSettings: ReturnType<typeof getDefaultLayersSettings>,\n dataByColumns: PlotDataAndSettings['data']['byColumns'],\n optionsState: ScatterplotUIState,\n dataBindAes: ReactiveState['dataBindAes'],\n inputGuide: InputGuide<InputState>,\n groupingSchema: ColumnNameSchema[] = [],\n defaultDotSize = DEFAULT_DOT_SIZE,\n): ScatterplotSettings['layers'] {\n const result: ScatterplotSettings['layers'] = [];\n\n function useDefault<T extends string>(value: T \| MappingLink \| null, columns: string[], defaultValue: T, continousAvailable = false): T \| {\n type: 'grouping';\n value: string;\n } \| ContinuousDataMappingForGraph<T> {\n if (columns.length) {\n const valueType = columns.length ? inputGuide.getSourceInfo(columns[0])?.type : undefined;\n const defaultByColumn = (valueType === 'String' \|\| !continousAvailable)\n ? { type: 'grouping', value: columns[0] } as { type: 'grouping'; value: string }\n : getContinuousColor<T>(columns[0], createContinuousMappingFromPalette(DEFAULT_CONTINUOUS_PALETTE), groupingSchema, dataByColumns);\n\n const savedMapping = dataBindAes[columns[0]];\n\n if (value === null \|\| (valueType === 'String' \|\| !continousAvailable) \|\| !isAestheticMappingContinuous(savedMapping)) {\n return defaultByColumn;\n }\n return getContinuousColor<T>(columns[0], savedMapping as AestheticMappingContinuous, groupingSchema, dataByColumns);\n }\n\n return typeof value === 'object' ? defaultValue : value as T;\n }\n\n const grouping = optionsState.components.grouping.selectorStates.map((s) => s.selectedSource);\n const shape = optionsState.components.shape?.selectorStates.map((s) => s.selectedSource) ?? 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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@milaboratories/graph-maker",
-  "version": "1.1.182",
+  "version": "1.1.183",
   "type": "module",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",

package/dist/icons/Reorder.vue.d.ts DELETED Viewed

	@@ -1,2 +0,0 @@
1	- declare const _default: import('vue').DefineComponent<{}, {}, {}, {}, {}, import('vue').ComponentOptionsMixin, import('vue').ComponentOptionsMixin, {}, string, import('vue').PublicProps, Readonly<{}> & Readonly<{}>, {}, {}, {}, {}, string, import('vue').ComponentProvideOptions, true, {}, SVGSVGElement>;
2	- export default _default;

package/dist/icons/Reorder.vue.js DELETED Viewed

@@ -1,19 +0,0 @@
-import { createElementBlock as e, openBlock as l, createStaticVNode as o } from "vue";
-import p from "../_virtual/_plugin-vue_export-helper.js";
-const a = {}, r = {
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-  height: "12",
-  viewBox: "0 0 8 12",
-  fill: "none"
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-function h(i, t) {
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-  ])]);
-}
-const d = /* @__PURE__ */ p(a, [["render", h]]);
-export {
-  d as default
-};
-//# sourceMappingURL=Reorder.vue.js.map

package/dist/icons/Reorder.vue.js.map DELETED Viewed

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