@milaboratories/graph-maker 1.1.175 → 1.1.177

package/dist/constantsCommon.d.ts

@@ -0,0 +1,313 @@
+import { ChartType } from '@milaboratories/pf-plots';
+import { Component } from 'vue';
+import { DotShape, LineType } from './components/AesSettings/types';
+import { AxisTitleMode, DeepPartial, DiscreteLayer, DiscreteLayersTemplate, Frame, HeatmapFrame, HeatmapLayer, HeatmapLayerTemplate, HistogramLayer, HistogramLayerTemplate, LabelsPosition, LabelsRotation, Layer, LayersTemplate, Scale, ScatterplotLayer, ScatterplotLayersTemplate, TitlePosition } from './types';
+export declare const DEFAULT_CHART_TYPE: ChartType;
+export declare function getInitialTemplate(restoredTemplate: LayersTemplate | null, chartType: ChartType): LayersTemplate;
+export declare const DISCRETE_TEMPLATES_MAP: Record<DiscreteLayersTemplate, DiscreteLayer[]>;
+export declare const SCATTERPLOT_TEMPLATES_MAP: Record<ScatterplotLayersTemplate, ScatterplotLayer[]>;
+export declare const SCATTERPLOT_UMAP_TEMPLATES_MAP: Partial<Record<ScatterplotLayersTemplate, ScatterplotLayer[]>>;
+export declare const HEATMAP_TEMPLATES_MAP: Record<HeatmapLayerTemplate, HeatmapLayer[]>;
+export declare const HISTOGRAM_TEMPLATES_MAP: Record<HistogramLayerTemplate, HistogramLayer[]>;
+export declare const LAYER_TITLES: Record<Layer, string>;
+export type DiscreteStatisticsState = {
+    overall: {
+        data: {
+            testMethod: null | string;
+        };
+        validity: {
+            testMethod: boolean;
+        };
+    };
+    referenceGroup: {
+        data: {
+            testMethod: null | string;
+            referenceGroup: null | string;
+            correctionMethod: string;
+            format: 'significance' | 'pValue';
+            ns: boolean;
+        };
+        validity: {
+            testMethod: boolean;
+            referenceGroup: boolean;
+        };
+    };
+    pairwise: {
+        data: {
+            testMethod: null | string;
+            correctionMethod: string;
+            format: 'significance' | 'pValue';
+            ns: boolean;
+        };
+        validity: {
+            testMethod: boolean;
+        };
+    };
+};
+export type ScatterplotStatisticsState = {
+    trend: {
+        on: boolean;
+        trim: boolean;
+        showLegend: boolean;
+    };
+};
+export type StatisticsState = DiscreteStatisticsState | ScatterplotStatisticsState;
+export declare function getInitialStatisticsState(chartType: ChartType, initialData?: DeepPartial<StatisticsState>): StatisticsState;
+export type NumberRange = {
+    min: number;
+    max: number;
+};
+export type MappingLink = {
+    type: string;
+    value?: string;
+};
+export type ColorAes = string | MappingLink;
+export type DotShapeAes = DotShape | MappingLink;
+export type DotSizeAes = number | NumberRange;
+export type LineTypeAes = LineType | MappingLink;
+export type FixedOrMappedAes = ColorAes | DotShapeAes | LineTypeAes;
+export type ContinuousDataMappingSize = {
+    column: string;
+    range: NumberRange;
+};
+export type ContinuousDataMappingForGraph<T extends string | number> = {
+    columnName: ColumnNameSchema;
+    domain: number[];
+    range: T[];
+    type: 'linear' | 'log';
+};
+export type ColumnNameSchema = {
+    type: 'column';
+    value: string;
+    label?: string;
+    valueLabels?: string;
+};
+export declare function isNumberRange(v: number | NumberRange | null | undefined): v is NumberRange;
+export declare function isMappedAes(item: FixedOrMappedAes | null | string | number | boolean | unknown): item is MappingLink;
+export declare function isContinuousDataMapping(v: ContinuousDataMappingSize | MappingLink | number | string | null | undefined): v is ContinuousDataMappingSize;
+export type LayersSettings = {
+    bubble: {
+        NAValueAs: number | null;
+        minRadius: number;
+        maxRadius: number;
+        normalizationDirection: 'row' | 'column' | null;
+        normalizationMethod: 'standardScaling' | 'meanNormalization';
+        aggregateByX: boolean;
+        aggregateByY: boolean;
+        aggregationMethod: 'mean' | 'median' | 'min' | 'max';
+        strokeColor: null | string;
+    };
+    bins: {
+        fillColor: ColorAes | null;
+        opacity: number;
+    };
+    dendro: {
+        dotFill: ColorAes;
+        dotShape: DotShapeAes;
+        dotSize: DotSizeAes;
+        lineColor: ColorAes;
+        mode: 'normal' | 'useAllNodesAsLeaves';
+        leavesMode: 'normal' | 'alignLeavesToLine';
+        showTable: boolean;
+        showLegend: boolean;
+    };
+    heatmap: {
+        NAValueAs: number | null;
+        normalizationDirection: 'row' | 'column' | null;
+        normalizationMethod: 'standardScaling' | 'meanNormalization';
+        aggregateByX: boolean;
+        aggregateByY: boolean;
+        aggregationMethod: 'mean' | 'median' | 'min' | 'max';
+    };
+    heatmapClustered: {
+        NAValueAs: number | null;
+        normalizationDirection: 'row' | 'column' | null;
+        normalizationMethod: 'standardScaling' | 'meanNormalization';
+        dendrogramX: boolean;
+        dendrogramY: boolean;
+        disableClusteringX: boolean;
+        disableClusteringY: boolean;
+        aggregateByX: boolean;
+        aggregateByY: boolean;
+        aggregationMethod: 'mean' | 'median' | 'min' | 'max';
+    };
+    dots: {
+        dotFill: ColorAes | null;
+        dotShape: DotShapeAes | null;
+        dotSize: ContinuousDataMappingSize | number | null;
+    };
+    curve: {
+        smoothing: boolean;
+        lineColor: ColorAes;
+    };
+    box: {
+        showOutliers: boolean;
+        fillColor: ColorAes | null;
+        lineColor: ColorAes;
+        dotShape: DotShapeAes;
+        lineType: LineTypeAes;
+        gapWidth: number;
+        opacity: number;
+        stat: {
+            low: number;
+            middle: number;
+            upper: number;
+            k: number;
+        };
+    };
+    binnedDots: {
+        fillColor: ColorAes | null;
+        lineColor: ColorAes;
+        opacity: number;
+        showOutliers: boolean;
+    };
+    jitteredDots: {
+        dotFill: ColorAes | null;
+        dotShape: DotShapeAes;
+        lineColor: ColorAes;
+        opacity: number;
+        showOutliers: boolean;
+    };
+    violin: {
+        fillColor: ColorAes | null;
+        lineColor: ColorAes;
+        lineType: LineTypeAes;
+        opacity: number;
+        trim: boolean;
+        showQuartiles: boolean;
+        quartilesLineStyle: LineType;
+        medianLineStyle: LineType;
+    };
+    bar: {
+        fillColor: ColorAes | null;
+        lineColor: ColorAes;
+        opacity: number;
+        height: 'max' | 'mean' | 'median';
+    };
+    stackedBar: {
+        fillColor: ColorAes | null;
+        lineColor: ColorAes;
+        opacity: number;
+        normalize: boolean;
+        height: 'sum' | 'max' | 'mean' | 'median';
+    };
+    stackedArea: {
+        fillColor: ColorAes | null;
+        lineColor: ColorAes;
+        barsOpacity: number;
+        areaOpacity: number;
+        normalize: boolean;
+        height: 'sum' | 'max' | 'mean' | 'median';
+        showBars: boolean;
+    };
+    line: {
+        pointsValues: 'mean' | 'median';
+        emptyGroupValue: number;
+        lineColor: ColorAes | null;
+        dotShape: DotShapeAes;
+        lineType: LineTypeAes;
+        dotFill: ColorAes | null;
+        opacity: number;
+    };
+    errorbar: {
+        pointsValues: 'mean' | 'median';
+        interval: 'sd' | 'se' | '';
+        lineColor: ColorAes | null;
+        dotShape: DotShapeAes;
+        dotFill: ColorAes | null;
+        opacity: number;
+    };
+    sina: {
+        dotFill: ColorAes | null;
+        dotShape: DotShapeAes;
+        opacity: number;
+        showOutliers: boolean;
+    };
+    logo: {
+        normalize: boolean;
+        opacity: number;
+    };
+};
+export declare const DEFAULT_LAYERS_SETTINGS: () => LayersSettings;
+export declare function getDefaultLayersSettings(): LayersSettings;
+export declare function getInitialLayersSettings(initialSettings?: DeepPartial<LayersSettings>): LayersSettings;
+export type Sorting = 'asc' | 'desc';
+export type AxesState = {
+    title: {
+        value: string;
+        position: TitlePosition;
+        mode: AxisTitleMode;
+        facetTitleFrame: Frame;
+    };
+    axisX: {
+        labelsPosition: LabelsPosition;
+        labelsRotation: LabelsRotation | null;
+        axisLabelsAngle: 0 | 45 | 90;
+        groupLabelsAngle: 0 | 45 | 90;
+        titleMode: AxisTitleMode;
+        customTitle: string;
+        gridlines: boolean;
+        linesBetweenCategories: boolean;
+        ticks: boolean;
+        scale: Scale;
+        significantLinesStyle: LineType;
+        sorting: Sorting;
+        allowNullPrimaryGroups: boolean;
+        allowNullSecondaryGroups: boolean;
+        order: {
+            source: string;
+            options: {
+                value: string;
+                label: string;
+            }[];
+        } | null;
+        cellSize: number | null;
+    };
+    axisY: {
+        labelsRotation: LabelsRotation | null;
+        titleMode: AxisTitleMode;
+        customTitle: string;
+        axisLabelsAngle: 0 | 45 | 90;
+        groupLabelsAngle: 0 | 45 | 90;
+        gridlines: boolean;
+        ticks: boolean;
+        scale: Scale;
+        significantLinesStyle: LineType;
+        sorting: Sorting;
+        order: {
+            source: string;
+            options: {
+                value: string;
+                label: string;
+            }[];
+        } | null;
+        cellSize: number | null;
+    };
+    legend: {};
+    other: {
+        frame: Frame | HeatmapFrame;
+        reverse: boolean;
+        facetSharedBy: 'x' | 'y' | 'xy' | 'none';
+        facetColumns: number;
+        binsCount: number;
+        groupingDirection: 'straight' | 'reverse';
+        groupingStack: 'vertical' | 'horizontal';
+        canvasRenderMode: boolean;
+    };
+};
+export declare function getInitialAxesSettings(chartType: ChartType, initialAxesSettings?: DeepPartial<AxesState>): AxesState;
+export declare const LAYER_ICONS: Record<LayersTemplate, Component>;
+type Option = {
+    value: string;
+    text: string;
+};
+export declare const STAT_TEST_METHOD: Option[];
+export declare const STAT_CORRECTION_METHOD: Option[];
+export declare const FORMAT_P_VALUE_OPTIONS: Option[];
+export type AesType = 'fill' | 'stroke' | 'dotShape' | 'lineType' | 'size';
+export declare const DEFAULT_WIDTH = 600;
+export declare const DEFAULT_HEIGHT = 350;
+export declare const DEFAULT_WIDTH_SMALL = 400;
+export declare const DEFAULT_HEIGHT_SMALL = 250;
+export declare const MAX_SEARCH_OPTIONS_LIST_LENGTH = 100;
+export {};

package/dist/constantsCommon.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"constantsCommon.js","sources":["../src/constantsCommon.ts"],"sourcesContent":["import type { ChartType } from '@milaboratories/pf-plots';\nimport type { Component } from 'vue';\nimport {\n  DotShape,\n  LineType\n} from './components/AesSettings/types';\nimport {\n  DEFAULT_BLACK,\n  DEFAULT_DOT_SHAPE,\n  DEFAULT_LINE_TYPE\n} from './constantsAesthetic';\nimport { DEFAULT_DOT_SIZE, DEFAULT_LINE_COLOR } from './dataBindAes';\nimport BarAndErrorIcon from './icons/BarAndErrorIcon.vue';\nimport BarAndLineIcon from './icons/BarAndLineIcon.vue';\nimport BarIcon from './icons/BarIcon.vue';\nimport BinnedDotsIcon from './icons/BinnedDotsIcon.vue';\nimport BoxplotAndBinnedIcon from './icons/BoxplotAndBinnedIcon.vue';\nimport BoxplotAndJitterIcon from './icons/BoxplotAndJitterIcon.vue';\nimport BoxplotIcon from './icons/BoxplotIcon.vue';\nimport DendroIcon from './icons/DendroIcon.vue';\nimport HeatmapIcon from './icons/HeatmapIcon.vue';\nimport JitteredDotsIcon from './icons/JitteredDotsIcon.vue';\nimport LineAndBinnedIcon from './icons/LineAndBinnedIcon.vue';\nimport LineAndErrorbarIcon from './icons/LineAndErrorbarIcon.vue';\nimport LineAndJitterIcon from './icons/LineAndJitterIcon.vue';\nimport LineIcon from './icons/LineIcon.vue';\nimport LogoIcon from './icons/LogoIcon.vue';\nimport ScatterplotIcon from './icons/ScatterplotIcon.vue';\nimport SinaIcon from './icons/SinaIcon.vue';\nimport StackedBarIcon from './icons/StackedBarIcon.vue';\nimport StackedAreaIcon from './icons/StackedAreaIcon.vue';\nimport ViolinAndBinnedIcon from './icons/ViolinAndBinnedIcon.vue';\nimport ViolinAndJitterIcon from './icons/ViolinAndJitterIcon.vue';\nimport ViolinIcon from './icons/ViolinIcon.vue';\nimport {\n  AxisTitleMode,\n  DeepPartial,\n  DiscreteLayer,\n  DiscreteLayersTemplate,\n  Frame,\n  HeatmapFrame, HeatmapLayer, HeatmapLayerTemplate, HistogramLayer, HistogramLayerTemplate,\n  LabelsPosition,\n  LabelsRotation,\n  Layer,\n  LayersTemplate,\n  Scale,\n  ScatterplotLayer,\n  ScatterplotLayersTemplate,\n  TitlePosition\n} from './types';\n\nexport const DEFAULT_CHART_TYPE: ChartType = 'discrete';\n\nexport function getInitialTemplate(\n  restoredTemplate: LayersTemplate | null,\n  chartType: ChartType\n) {\n  if (chartType === 'discrete') {\n    return restoredTemplate &&\n    DISCRETE_TEMPLATES_MAP[restoredTemplate as DiscreteLayersTemplate]\n      ? restoredTemplate\n      : 'box';\n  }\n  if (chartType === 'scatterplot' || chartType === 'scatterplot-umap') {\n    return restoredTemplate &&\n    SCATTERPLOT_TEMPLATES_MAP[restoredTemplate as ScatterplotLayersTemplate]\n      ? restoredTemplate\n      : 'dots';\n  }\n  if (chartType === 'dendro') {\n    return 'dendro';\n  }\n  return restoredTemplate ?? 'heatmap';\n}\n\nexport const DISCRETE_TEMPLATES_MAP: Record<\n  DiscreteLayersTemplate,\n  DiscreteLayer[]\n> = {\n  box: ['box'],\n  box_binnedDots: ['box', 'binnedDots'],\n  box_jitteredDots: ['box', 'jitteredDots'],\n  violin: ['violin'],\n  violin_binnedDots: ['violin', 'binnedDots'],\n  violin_jitteredDots: ['violin', 'jitteredDots'],\n  binnedDots: ['binnedDots'],\n  jitteredDots: ['jitteredDots'],\n  bar: ['bar'],\n  bar_line: ['bar', 'line'],\n  bar_errorbar: ['bar', 'errorbar'],\n  stackedBar: ['stackedBar'],\n  stackedArea: ['stackedArea'],\n  line: ['line'],\n  line_jitteredDots: ['line', 'jitteredDots'],\n  line_binnedDots: ['line', 'binnedDots'],\n  line_errorbar: ['line', 'errorbar'],\n  errorbar: ['errorbar'],\n  sina: ['sina'],\n  logo: ['logo']\n};\n\nexport const SCATTERPLOT_TEMPLATES_MAP: Record<\n  ScatterplotLayersTemplate,\n  ScatterplotLayer[]\n> = {\n  dots: ['dots'],\n  curve: ['curve'],\n  curve_dots: ['curve', 'dots']\n};\n\nexport const SCATTERPLOT_UMAP_TEMPLATES_MAP: Partial<Record<\n  ScatterplotLayersTemplate,\n  ScatterplotLayer[]\n>> = {\n  dots: ['dots'],\n  curve_dots: ['curve', 'dots']\n};\n\nexport const HEATMAP_TEMPLATES_MAP: Record<HeatmapLayerTemplate, HeatmapLayer[]> = {\n  heatmap: ['heatmap'],\n  heatmapClustered: ['heatmapClustered']\n};\nexport const HISTOGRAM_TEMPLATES_MAP: Record<HistogramLayerTemplate, HistogramLayer[]> = {\n  bins: ['bins']\n}\nexport const LAYER_TITLES: Record<Layer, string> = {\n  box: 'Boxplot',\n  binnedDots: 'Binned Dots',\n  jitteredDots: 'Jittered Dots',\n  violin: 'Violins',\n  bar: 'Bar',\n  stackedBar: 'Stacked Bar',\n  stackedArea: 'Stacked Bar + Stream Area',\n  line: 'Line',\n  errorbar: 'Error Bar',\n  sina: 'Sina',\n  logo: 'Logo Plot',\n  dots: 'Scatter Plot',\n  curve: 'Curve',\n  heatmap: 'Heatmap',\n  heatmapClustered: 'Heatmap + Dendro',\n  dendro: 'Dendrogram',\n  bins: 'Histogram',\n  bubble: 'Bubble plot'\n};\n\nexport type DiscreteStatisticsState = {\n  overall: {\n    data: { testMethod: null | string };\n    validity: { testMethod: boolean };\n  };\n  referenceGroup: {\n    data: {\n      testMethod: null | string;\n      referenceGroup: null | string;\n      correctionMethod: string;\n      format: 'significance' | 'pValue';\n      ns: boolean;\n    };\n    validity: {\n      testMethod: boolean;\n      referenceGroup: boolean;\n    };\n  };\n  pairwise: {\n    data: {\n      testMethod: null | string;\n      correctionMethod: string;\n      format: 'significance' | 'pValue';\n      ns: boolean;\n    };\n    validity: { testMethod: boolean };\n  };\n};\n\nexport type ScatterplotStatisticsState = {\n  trend: {\n    on: boolean,\n    trim: boolean,\n    showLegend: boolean\n  },\n}\n\nexport type StatisticsState = DiscreteStatisticsState | ScatterplotStatisticsState;\n\nexport function getInitialStatisticsState(chartType: ChartType, initialData?: DeepPartial<StatisticsState>): StatisticsState {\n  if (chartType === 'discrete') {\n    const initial = initialData as DiscreteStatisticsState;\n    return {\n      overall: {\n        data: { testMethod: initial?.overall?.data?.testMethod ?? null },\n        validity: { testMethod: initial?.overall?.validity?.testMethod ?? true }\n      },\n      referenceGroup: {\n        data: {\n          testMethod: initial?.referenceGroup?.data?.testMethod ?? null,\n          referenceGroup: initial?.referenceGroup?.data?.referenceGroup ?? null,\n          correctionMethod: initial?.referenceGroup?.data?.correctionMethod ?? 'Bonferroni',\n          format: initial?.referenceGroup?.data?.format ?? 'significance',\n          ns: initial?.referenceGroup?.data?.ns ?? false\n        },\n        validity: {\n          testMethod: initial?.referenceGroup?.validity?.testMethod ?? true,\n          referenceGroup: initial?.referenceGroup?.validity?.referenceGroup ?? true\n        }\n      },\n      pairwise: {\n        data: {\n          testMethod: initial?.pairwise?.data?.testMethod ?? null,\n          correctionMethod: initial?.pairwise?.data?.correctionMethod ?? 'Bonferroni',\n          format: initial?.pairwise?.data?.format ?? 'significance',\n          ns: initial?.pairwise?.data?.ns ?? false\n        },\n        validity: { testMethod: initial?.pairwise?.validity?.testMethod ?? true }\n      }\n    } as DiscreteStatisticsState;\n  }\n  const initial = initialData as ScatterplotStatisticsState;\n  return {\n    trend: {\n      on: initial?.trend?.on ?? false,\n      trim: initial?.trend?.trim ?? false,\n      showLegend: initial?.trend?.showLegend ?? true\n    }\n  };\n}\n\nexport type NumberRange = { min: number, max: number }\nexport type MappingLink = { type: string, value?: string }; // {type: 'primaryGrouping'} for example\nexport type ColorAes = string | MappingLink;\nexport type DotShapeAes = DotShape | MappingLink;\nexport type DotSizeAes = number | NumberRange;\nexport type LineTypeAes = LineType | MappingLink;\nexport type FixedOrMappedAes = ColorAes | DotShapeAes | LineTypeAes;\n\nexport type ContinuousDataMappingSize = {\n  column: string,\n  range: NumberRange\n}\n\nexport type ContinuousDataMappingForGraph<T extends string | number> = {columnName: ColumnNameSchema, domain: number[], range: T[], type: 'linear' | 'log'}\n\nexport type ColumnNameSchema = {\n  type: 'column'\n  value: string,\n  label?: string\n  valueLabels?: string\n}\n\nexport function isNumberRange(v: number | NumberRange | null | undefined): v is NumberRange {\n  return typeof v !== 'undefined' && v !== null && typeof v === 'object' && 'min' in v && 'max' in v;\n}\n\nexport function isMappedAes(\n  item: FixedOrMappedAes | null | string | number | boolean | unknown\n): item is MappingLink {\n  return typeof item === 'object' && item !== null && 'type' in item;\n}\n\nexport function isContinuousDataMapping(v: ContinuousDataMappingSize | MappingLink | number | string | null | undefined): v is ContinuousDataMappingSize {\n  return typeof v !== 'undefined' && v !== null && typeof v === 'object' && 'range' in v;\n}\n\nexport type LayersSettings = {\n  //bubble\n  bubble: {\n    NAValueAs: number | null,\n    minRadius: number,\n    maxRadius: number,\n    normalizationDirection: 'row' | 'column' | null,\n    normalizationMethod: 'standardScaling' | 'meanNormalization',\n    aggregateByX: boolean;\n    aggregateByY: boolean;\n    aggregationMethod: 'mean' | 'median' | 'min' | 'max';\n    strokeColor: null | string\n  },\n  // histogram\n  bins: {\n    fillColor: ColorAes | null,\n    opacity: number\n  },\n  //dendrogram\n  dendro: {\n    dotFill: ColorAes,\n    dotShape: DotShapeAes,\n    dotSize: DotSizeAes,\n    lineColor: ColorAes,\n    mode: 'normal' | 'useAllNodesAsLeaves',\n    leavesMode: 'normal' | 'alignLeavesToLine',\n    showTable: boolean,\n    showLegend: boolean,\n  },\n  //heatmap\n  heatmap: {\n    NAValueAs: number | null,\n    normalizationDirection: 'row' | 'column' | null,\n    normalizationMethod: 'standardScaling' | 'meanNormalization',\n    aggregateByX: boolean;\n    aggregateByY: boolean;\n    aggregationMethod: 'mean' | 'median' | 'min' | 'max'\n  },\n  heatmapClustered: {\n    NAValueAs: number | null,\n    normalizationDirection: 'row' | 'column' | null,\n    normalizationMethod: 'standardScaling' | 'meanNormalization',\n    dendrogramX: boolean,\n    dendrogramY: boolean,\n    disableClusteringX: boolean,\n    disableClusteringY: boolean,\n    aggregateByX: boolean;\n    aggregateByY: boolean;\n    aggregationMethod: 'mean' | 'median' | 'min' | 'max'\n  },\n  //scatterplot\n  dots: {\n    dotFill: ColorAes | null,\n    dotShape: DotShapeAes | null,\n    dotSize: ContinuousDataMappingSize | number | null\n  },\n  curve: {\n    smoothing: boolean,\n    lineColor: ColorAes\n  },\n  //discrete\n  box: {\n    showOutliers: boolean,\n    fillColor: ColorAes | null,\n    lineColor: ColorAes,\n    dotShape: DotShapeAes,\n    lineType: LineTypeAes,\n    gapWidth: number,\n    opacity: number,\n    stat: {\n      low: number,\n      middle: number,\n      upper: number,\n      k: number,\n    },\n  },\n  binnedDots: {\n    fillColor: ColorAes | null,\n    lineColor: ColorAes,\n    opacity: number,\n    showOutliers: boolean,\n  },\n  jitteredDots: {\n    dotFill: ColorAes | null,\n    dotShape: DotShapeAes,\n    lineColor: ColorAes,\n    opacity: number,\n    showOutliers: boolean,\n  },\n  violin: {\n    fillColor: ColorAes | null,\n    lineColor: ColorAes,\n    lineType: LineTypeAes,\n    opacity: number,\n    trim: boolean,\n    showQuartiles: boolean,\n    quartilesLineStyle: LineType,\n    medianLineStyle: LineType\n  },\n  bar: {\n    fillColor: ColorAes | null,\n    lineColor: ColorAes,\n    opacity: number,\n    height: 'max' | 'mean' | 'median',\n  },\n  stackedBar: {\n    fillColor: ColorAes | null,\n    lineColor: ColorAes,\n    opacity: number,\n    normalize: boolean,\n    height: 'sum' | 'max' | 'mean' | 'median',\n  },\n  stackedArea: {\n    fillColor: ColorAes | null,\n    lineColor: ColorAes,\n    barsOpacity: number,\n    areaOpacity: number,\n    normalize: boolean,\n    height: 'sum' | 'max' | 'mean' | 'median',\n    showBars: boolean\n  },\n  line: {\n    pointsValues: 'mean' | 'median',\n    emptyGroupValue: number,\n    lineColor: ColorAes | null,\n    dotShape: DotShapeAes,\n    lineType: LineTypeAes,\n    dotFill: ColorAes | null,\n    opacity: number,\n  },\n  errorbar: {\n    pointsValues: 'mean' | 'median',\n    interval: 'sd' | 'se' | '',\n    lineColor: ColorAes | null,\n    dotShape: DotShapeAes,\n    dotFill: ColorAes | null,\n    opacity: number,\n  },\n  sina: {\n    dotFill: ColorAes | null,\n    dotShape: DotShapeAes,\n    opacity: number,\n    showOutliers: boolean,\n  },\n  logo: {\n    normalize: boolean,\n    opacity: number,\n  }\n};\nexport const DEFAULT_LAYERS_SETTINGS: () => LayersSettings = () => ({\n  //bubble\n  bubble: {\n    NAValueAs: 0,\n    strokeColor: null,\n    minRadius: 3,\n    maxRadius: 38,\n    normalizationDirection: 'row',\n    normalizationMethod: 'standardScaling',\n    aggregateByX: false,\n    aggregateByY: false,\n    aggregationMethod: 'mean'\n  },\n  // histogram\n  bins: {\n    fillColor: null,\n    opacity: 1\n  },\n  //dendro\n  dendro: {\n    dotFill: DEFAULT_BLACK,\n    dotShape: DEFAULT_DOT_SHAPE,\n    dotSize: DEFAULT_DOT_SIZE,\n    lineColor: DEFAULT_BLACK,\n    mode: 'normal',\n    leavesMode: 'normal',\n    showTable: false,\n    showLegend: true\n  },\n  //heatmap\n  heatmap: {\n    NAValueAs: 0,\n    normalizationDirection: 'row',\n    normalizationMethod: 'standardScaling',\n    aggregateByX: false,\n    aggregateByY: false,\n    aggregationMethod: 'mean'\n  },\n  heatmapClustered: {\n    NAValueAs: 0,\n    normalizationDirection: 'row',\n    normalizationMethod: 'standardScaling',\n    dendrogramX: true,\n    dendrogramY: true,\n    disableClusteringX: false,\n    disableClusteringY: false,\n    aggregateByX: false,\n    aggregateByY: false,\n    aggregationMethod: 'mean'\n  },\n  //scatterplot\n  dots: {\n    dotFill: null as ColorAes | null,\n    dotShape: null as DotShapeAes | null,\n    dotSize: null as ContinuousDataMappingSize | number | null\n  },\n  curve: { lineColor: DEFAULT_BLACK, smoothing: true },\n  //discrete\n  box: {\n    showOutliers: true,\n    fillColor: null as ColorAes | null,\n    lineColor: DEFAULT_LINE_COLOR as ColorAes,\n    dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n    lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n    gapWidth: 0.2,\n    opacity: 1,\n    stat: {\n      low: 0.25,\n      middle: 0.5,\n      upper: 0.75,\n      k: 1.5\n    }\n  },\n  binnedDots: {\n    fillColor: null as ColorAes | null,\n    lineColor: DEFAULT_LINE_COLOR as ColorAes,\n    opacity: 1,\n    showOutliers: true\n  },\n  jitteredDots: {\n    dotFill: null as ColorAes | null,\n    dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n    lineColor: DEFAULT_LINE_COLOR as ColorAes,\n    opacity: 1,\n    showOutliers: true\n  },\n  violin: {\n    fillColor: null as ColorAes | null,\n    lineColor: DEFAULT_LINE_COLOR as ColorAes,\n    lineType: DEFAULT_LINE_TYPE as 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'sd',\n    lineColor: null as ColorAes | null,\n    dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n    dotFill: null as ColorAes | null,\n    opacity: 1\n  },\n  sina: {\n    dotFill: null as ColorAes | null,\n    dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n    opacity: 1,\n    showOutliers: true\n  },\n  logo: {\n    normalize: false,\n    opacity: 1\n  }\n});\n\nexport function getDefaultLayersSettings() {\n  return DEFAULT_LAYERS_SETTINGS();\n}\n\nconst DISCRETE_LAYERS: Layer[] = [\n  'box',\n  'binnedDots',\n  'jitteredDots',\n  'violin',\n  'bar',\n  'stackedBar',\n  'line',\n  'errorbar',\n  'sina',\n  'logo'\n];\nconst SCATTERPLOT_LAYERS: Layer[] = ['dots', 'curve'];\nconst SCATTERPLOT_UMAP_LAYERS: Layer[] = ['dots'];\nconst HEATMAP_LAYERS: Layer[] = ['heatmap', 'heatmapClustered'];\nconst DENDRO_LAYERS: Layer[] = ['dendro'];\nconst HISTOGRAM_LAYERS: Layer[] = ['bins'];\nconst BUBBLE_LAYERS: Layer[] = ['bubble'];\nconst LAYERS_BY_CHART_TYPE: Record<ChartType, Layer[]> = {\n  discrete: DISCRETE_LAYERS,\n  scatterplot: SCATTERPLOT_LAYERS,\n  'scatterplot-umap': SCATTERPLOT_UMAP_LAYERS,\n  heatmap: HEATMAP_LAYERS,\n  dendro: DENDRO_LAYERS,\n  histogram: HISTOGRAM_LAYERS,\n  bubble: BUBBLE_LAYERS\n};\n\nexport function getInitialLayersSettings(\n  initialSettings?: DeepPartial<LayersSettings>\n): LayersSettings {\n  const defaultSettings = DEFAULT_LAYERS_SETTINGS();\n  const layers: Layer[] = Object.keys(defaultSettings) as Layer[];\n  return layers.reduce((res, layer) => {\n    Object.assign(\n      res[layer],\n      initialSettings?.[layer] ?? {}\n    );\n    return res;\n  }, defaultSettings);\n}\n\nexport type Sorting = 'asc' | 'desc';\nexport type AxesState = {\n  title: { value: string; position: TitlePosition; mode: AxisTitleMode; facetTitleFrame: Frame };\n  axisX: {\n    labelsPosition: LabelsPosition; // for heatmap - top/bottom/left/right/hidden\n    labelsRotation: LabelsRotation | null; // only for discrete X axis - 'center'/'90deg'/'45deg'; null for auto mode before user chose\n    axisLabelsAngle: 0 | 45 | 90; // for heatmap\n    groupLabelsAngle: 0 | 45 | 90; // for heatmap\n    titleMode: AxisTitleMode; // 'auto' - from column or 'custom' - from 'customTitle' field or 'hidden'\n    customTitle: string; // user axis title, not default from column\n    gridlines: boolean;\n    linesBetweenCategories: boolean; // for discrete - position for vertical gridlines\n    ticks: boolean;\n    scale: Scale; // linear or log\n    significantLinesStyle: LineType;\n    sorting: Sorting;\n    allowNullPrimaryGroups: boolean; // for discrete - allow group with null grouping value\n    allowNullSecondaryGroups: boolean;\n    order: {\n      source: string,\n      options: {value: string, label: string}[]\n    } | null;\n    cellSize: number | null;\n  };\n  axisY: {\n    labelsRotation: LabelsRotation | null; // only for discrete X axis - 'center'/'90deg'/'45deg'; null for auto mode before user chose\n    titleMode: AxisTitleMode;\n    customTitle: string;\n    axisLabelsAngle: 0 | 45 | 90; // for heatmap\n    groupLabelsAngle: 0 | 45 | 90; // for heatmap\n    gridlines: boolean;\n    ticks: boolean;\n    scale: Scale;\n    significantLinesStyle: LineType;\n    sorting: Sorting;\n    order: {\n      source: string,\n      options: {value: string, label: string}[]\n    } | null;\n    cellSize: number | null;\n  };\n  legend: {};\n  other: {\n    frame: Frame | HeatmapFrame;\n    reverse: boolean;\n    facetSharedBy: 'x' | 'y' | 'xy' | 'none';\n    facetColumns: number;\n    binsCount: number;\n    groupingDirection: 'straight' | 'reverse';\n    groupingStack: 'vertical' | 'horizontal';\n    canvasRenderMode: boolean;\n  };\n};\n\nconst DEFAULT_AXES: () => AxesState = () => ({\n  title: {\n    value: 'Graph 1',\n    position: 'center',\n    mode: 'auto',\n    facetTitleFrame: 'full'\n  },\n  axisX: {\n    labelsPosition: 'bottom',\n    labelsRotation: null,\n    axisLabelsAngle: 90,\n    groupLabelsAngle: 45,\n    titleMode: 'auto',\n    customTitle: '',\n    gridlines: true,\n    linesBetweenCategories: true,\n    ticks: true,\n    scale: 'linear',\n    significantLinesStyle: 'dashed',\n    sorting: 'asc',\n    allowNullPrimaryGroups: false,\n    allowNullSecondaryGroups: false,\n    order: null,\n    cellSize: null,\n  },\n  axisY: {\n    labelsRotation: null,\n    titleMode: 'auto',\n    customTitle: '',\n    axisLabelsAngle: 90,\n    groupLabelsAngle: 45,\n    gridlines: true,\n    ticks: true,\n    scale: 'linear',\n    significantLinesStyle: 'dashed',\n    sorting: 'asc',\n    order: null,\n    cellSize: null,\n  },\n  legend: {},\n  other: {\n    frame: 'full',\n    reverse: false,\n    canvasRenderMode: false,\n    facetSharedBy: 'xy',\n    facetColumns: 3,\n    binsCount: 10,\n    groupingDirection: 'straight',\n    groupingStack: 'vertical'\n  }\n});\n\nfunction isHeatmapFrame(frame: Frame | HeatmapFrame): frame is HeatmapFrame {\n  return frame === 'full' || frame === 'none';\n}\n\nexport function getInitialAxesSettings(\n  chartType: ChartType,\n  initialAxesSettings?: DeepPartial<AxesState>\n): AxesState {\n  const defaultAxes = DEFAULT_AXES();\n  if (!initialAxesSettings) {\n    return defaultAxes;\n  }\n\n  // TODO: divide into separated settings for chart types\n  function getFrame(frame?: Frame | HeatmapFrame): Frame | HeatmapFrame {\n    if (!frame) {\n      return 'full';\n    }\n    if (chartType === 'heatmap' && !isHeatmapFrame(frame)) {\n      return 'full' as HeatmapFrame;\n    }\n    if (chartType !== 'heatmap' && isHeatmapFrame(frame)) {\n      return frame === 'none' ? 'empty' : (frame as Frame);\n    }\n    return frame;\n  }\n\n  return {\n    title: {\n      ...defaultAxes.title,\n      ...initialAxesSettings.title\n    },\n    axisX: {\n      ...defaultAxes.axisX,\n      ...initialAxesSettings.axisX\n    },\n    axisY: {\n      ...defaultAxes.axisY,\n      ...initialAxesSettings.axisY\n    },\n    legend: {\n      ...defaultAxes.legend,\n      ...initialAxesSettings.legend\n    },\n    other: {\n      ...defaultAxes.other,\n      ...initialAxesSettings.other,\n      frame: getFrame(initialAxesSettings.other?.frame)\n    }\n  };\n}\n\nexport const LAYER_ICONS: Record<LayersTemplate, Component> = {\n  box: BoxplotIcon,\n  box_binnedDots: BoxplotAndBinnedIcon,\n  box_jitteredDots: BoxplotAndJitterIcon,\n  binnedDots: BinnedDotsIcon,\n  jitteredDots: JitteredDotsIcon,\n  violin: ViolinIcon,\n  violin_binnedDots: ViolinAndBinnedIcon,\n  violin_jitteredDots: ViolinAndJitterIcon,\n  bar: BarIcon,\n  bar_line: BarAndLineIcon,\n  bar_errorbar: 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package/dist/dataBindAes.d.ts

@@ -0,0 +1,79 @@
+import { InputState } from '@milaboratories/pf-plots';
+import { ContinuousPalette, DotShape, LineType, Palette } from './components/AesSettings/types';
+import { AesType, ContinuousDataMappingSize, NumberRange } from './constantsCommon';
+import { UniqueValuesBySourceMap } from './types';
+export type AestheticMappingState = Record<string, AestheticMapping>;
+export type AestheticMapping = AestheticMappingContinuous | AestheticMappingCategorical;
+interface MappingRange {
+    maxValue: number | null;
+    minValue: number | null;
+}
+/** Mapping for continuous axes (numerical axes) */
+export interface AestheticMappingContinuous {
+    type: 'continuous';
+    palette: ContinuousPalette;
+    range: MappingRange | null;
+    midPoint: number | null;
+    log: boolean;
+    naAes: AestheticValues;
+}
+export declare function isAestheticMappingContinuous(v: unknown | AestheticMappingContinuous): v is AestheticMappingContinuous;
+/** Mapping for categorical axes (string axes) */
+export interface AestheticMappingCategorical {
+    type: 'categorical';
+    palette: Palette;
+    naAes: AestheticValues;
+    order: string[];
+    hidden?: Record<string, boolean>;
+    mapping: AestheticMappingRecord;
+}
+export declare function isAestheticMappingCategorical(v: unknown | AestheticMappingCategorical): v is AestheticMappingCategorical;
+export declare function isAestheticMapping(v: unknown | AestheticMappingContinuous | AestheticMappingCategorical): v is AestheticMapping;
+type AestheticMappingRecord = Record<string | number, {
+    aes: Partial<AestheticValues>;
+    colorIdx: number;
+}>;
+interface AestheticValues {
+    /** Number to retrieve the color from pallet, string to represent specific color as hex */
+    color: string;
+    lineShape: LineType;
+    dotShape: DotShape;
+}
+export declare const DEFAULT_LINE_COLOR = "#110529";
+export declare const DEFAULT_LINE_SHAPE: LineType;
+export declare const DEFAULT_LINE_WIDTH = 1;
+export declare const DEFAULT_DOT_SHAPE: DotShape;
+export declare const DEFAULT_DOT_SIZE = 3;
+export declare const DEFAULT_DOT_SIZE_CANVAS = 2;
+export declare const DEFAULT_DOT_RANGE: NumberRange;
+export declare const DEFAULT_NA_AES: {
+    color: string;
+    lineShape: LineType;
+    dotShape: DotShape;
+};
+export declare function createCategoricalMappingFromPalette(palette: Palette, values: string[]): AestheticMappingCategorical;
+export declare function updateDataBindAes(optionsState: InputState, dataBindAes: Record<string, AestheticMapping>, uniqueValuesMap: UniqueValuesBySourceMap): void;
+export declare function updateCategoricalMapping(newUniqueValues: string[], currentMapping: AestheticMappingCategorical): AestheticMappingCategorical;
+export declare function createContinuousMappingFromPalette(palette: ContinuousPalette): AestheticMappingContinuous;
+export declare function createDefaultMapping(values: string[]): AestheticMappingCategorical;
+export declare function createDefaultContinuousMapping(columnId: string): ContinuousDataMappingSize;
+export declare function getChartSettingsInheritedAes(uniqueValuesData: UniqueValuesBySourceMap, savedMapping: AestheticMapping | undefined, sourceId: string | null, usedAesInMapping: Record<AesType, boolean>): {
+    inheritedAes: {};
+    order?: undefined;
+} | {
+    order: string[];
+    inheritedAes: Record<string, any>;
+};
+export declare function getScatterplotAes(selectedSource: string, uniqueValuesData: UniqueValuesBySourceMap, dataBindAes: AestheticMappingState): {
+    order: string[];
+    inheritedAes: Record<string, any>;
+};
+export declare function getHistogramAes(selectedSource: string, uniqueValuesData: UniqueValuesBySourceMap, dataBindAes: AestheticMappingState): {
+    order?: undefined;
+    inheritedAes?: undefined;
+} | {
+    order: string[];
+    inheritedAes: Record<string, any>;
+};
+export declare function getDendroAes(selectedSource: string, uniqueValuesData: UniqueValuesBySourceMap, dataBindAes: AestheticMappingState, field: keyof AestheticValues): Record<string, AestheticValues[keyof AestheticValues]>;
+export {};

package/dist/dataBindAes.js

@@ -0,0 +1,190 @@
+import { scaleLinear as F } from "d3-scale";
+import { PALETTE_MAP as _, FIXES_DOT_SHAPES as u, FIXED_LINE_TYPES as g, isCategorical as P, DEFAULT_BLACK as E } from "./constantsAesthetic.js";
+function y(t) {
+  return t !== null && typeof t == "object" && "palette" in t && "type" in t && t.type === "continuous";
+}
+function f(t) {
+  return t !== null && typeof t == "object" && "palette" in t && "type" in t && t.type === "categorical";
+}
+function W(t) {
+  return f(t) || y(t);
+}
+const M = "#110529", I = "solid", m = 1, T = "21", D = 3, b = 2, j = { min: 3, max: 10 }, C = {
+  color: "#ccc",
+  lineShape: I,
+  dotShape: T
+}, N = "light";
+function U(t) {
+  const c = 1 / (t.length - 1);
+  return F().domain(t.map((a, e) => e * c)).range(t);
+}
+function O(t, c) {
+  const a = _[t].colors, e = c.length > 1 ? 1 / (c.length - 1) : 0, s = U(a), r = P(t), l = c.reduce((o, n, i) => (o[n] = {
+    colorIdx: r ? i : i * e,
+    aes: {
+      color: r ? a[i % a.length] : s(i * e),
+      lineShape: g[i % g.length],
+      dotShape: u[i % u.length]
+    }
+  }, o), {});
+  return {
+    type: "categorical",
+    palette: t,
+    naAes: C,
+    order: c,
+    hidden: {},
+    mapping: l
+  };
+}
+const V = [
+  "primaryGrouping",
+  "secondaryGrouping",
+  // discrete charts
+  "grouping",
+  "shape",
+  // scatterplot
+  "nodeColor",
+  "nodeShape",
+  "lineColor",
+  "heatmapAnnotation"
+  // dendro
+];
+function w(t, c, a) {
+  V.forEach((e) => {
+    var r;
+    const s = (r = t.components[e]) == null ? void 0 : r.selectorStates;
+    s == null || s.forEach(({ selectedSource: l }) => {
+      var i;
+      const o = c[l], n = (i = a[l]) == null ? void 0 : i.list;
+      o && n && f(o) && (c[l] = H(n, o));
+    });
+  });
+}
+function H(t, c) {
+  const { palette: a, order: e, mapping: s } = c, r = new Set(t), l = new Set(e), o = t.filter((p) => !l.has(p)), n = e.filter((p) => !r.has(p));
+  if (!o.length && !n.length)
+    return c;
+  let i = [...t];
+  const h = { ...s }, S = _[a].colors;
+  return o.forEach((p, L) => {
+    const d = L + (e.length ? s[e[e.length - 1]].colorIdx + 1 : 0);
+    h[p] = {
+      colorIdx: d,
+      aes: {
+        color: S[d % S.length],
+        lineShape: g[d % g.length],
+        dotShape: u[d % u.length]
+      }
+    };
+  }), n.forEach((p) => {
+    h[p] && delete h[p];
+  }), { ...c, order: i, mapping: h };
+}
+function z(t) {
+  return {
+    type: "continuous",
+    palette: t,
+    naAes: C,
+    range: null,
+    midPoint: null,
+    log: !1
+  };
+}
+function A(t) {
+  return O(N, t);
+}
+function R(t, c, a, e) {
+  var l;
+  if ((c == null ? void 0 : c.type) === "continuous")
+    return { inheritedAes: {} };
+  const s = a ? ((l = t[a]) == null ? void 0 : l.list) ?? [] : [], r = c ?? A(s);
+  return r.order.length ? {
+    order: r.order.filter((o) => {
+      var n;
+      return !((n = r.hidden) != null && n[o]);
+    }),
+    inheritedAes: r.order.reduce((o, n) => {
+      const i = r.mapping[n].aes;
+      return o[n] = {}, e.fill && (o[n].fillColor = i.color, o[n].dotFill = i.color), e.stroke && (o[n].lineColor = i.color), e.dotShape && (o[n].dotShape = i.dotShape), e.lineType && (o[n].lineShape = i.lineShape), o;
+    }, {})
+  } : { inheritedAes: {} };
+}
+function X(t, c, a) {
+  var l;
+  const e = a[t];
+  if (e && !f(e))
+    return { order: [], inheritedAes: {} };
+  const s = ((l = c[t]) == null ? void 0 : l.list) ?? [], r = e ?? A(s);
+  return {
+    order: r.order,
+    inheritedAes: r.order.reduce((o, n) => {
+      const i = r.mapping[n].aes;
+      return o[n] = {
+        fillColor: i.color,
+        lineColor: i.color,
+        dotFill: i.color,
+        dotShape: i.dotShape,
+        dotSize: D,
+        lineWidth: m
+      }, o;
+    }, {})
+  };
+}
+function Z(t, c, a) {
+  var l;
+  const e = a[t];
+  if (e && !f(e))
+    return {};
+  const s = ((l = c[t]) == null ? void 0 : l.list) ?? [], r = e ?? A(s);
+  return r.order.length ? {
+    order: r.order.filter((o) => {
+      var n;
+      return !((n = r.hidden) != null && n[o]);
+    }),
+    inheritedAes: r.order.reduce((o, n) => {
+      const i = r.mapping[n].aes;
+      return o[n] = {
+        fillColor: i.color,
+        lineColor: E,
+        dotFill: E,
+        dotShape: T,
+        dotSize: D,
+        lineWidth: m
+      }, o;
+    }, {})
+  } : { order: [], inheritedAes: {} };
+}
+function k(t, c, a, e) {
+  var l;
+  const s = ((l = c[t]) == null ? void 0 : l.list) ?? [], r = a[t] ?? A(s);
+  return r.order.reduce(
+    (o, n) => {
+      const i = r.mapping[n].aes;
+      return o[n] = i[e], o;
+    },
+    {}
+  );
+}
+export {
+  j as DEFAULT_DOT_RANGE,
+  T as DEFAULT_DOT_SHAPE,
+  D as DEFAULT_DOT_SIZE,
+  b as DEFAULT_DOT_SIZE_CANVAS,
+  M as DEFAULT_LINE_COLOR,
+  I as DEFAULT_LINE_SHAPE,
+  m as DEFAULT_LINE_WIDTH,
+  C as DEFAULT_NA_AES,
+  O as createCategoricalMappingFromPalette,
+  z as createContinuousMappingFromPalette,
+  A as createDefaultMapping,
+  R as getChartSettingsInheritedAes,
+  k as getDendroAes,
+  Z as getHistogramAes,
+  X as getScatterplotAes,
+  W as isAestheticMapping,
+  f as isAestheticMappingCategorical,
+  y as isAestheticMappingContinuous,
+  H as updateCategoricalMapping,
+  w as updateDataBindAes
+};
+//# sourceMappingURL=dataBindAes.js.map