npm - @milaboratories/graph-maker - Versions diffs - 1.1.167 → 1.1.169 - Mend

@milaboratories/graph-maker 1.1.167 → 1.1.169

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (90) hide show

package/dist/GraphMaker/utils/createChartSettingsForRender/getLayersDataFromForms.js CHANGED Viewed

@@ -1,4 +1,4 @@
-import { isContinuousDataMapping as g } from "../../constantsCommon.js";
+import { isContinuousDataMapping as T } from "../../constantsCommon.js";
 import { AMINOACID_COLOR_MAPPING as L, NUCLEOTIDE_COLOR_MAPPING as A, PALETTE_MAP as b, DEFAULT_BLACK as y, DEFAULT_CONTINUOUS_PALETTE as F, DEFAULT_DOT_SHAPE as I } from "../../constantsAesthetic.js";
 import { DEFAULT_DOT_SIZE as V, DEFAULT_DOT_RANGE as _, isAestheticMappingContinuous as P, createContinuousMappingFromPalette as N } from "../../dataBindAes.js";
 function x(r) {
@@ -111,6 +111,7 @@ function B(r, l, p, u, d) {
       o.push({
         type: "stackedBar",
         normalize: e.normalize,
+        height: e.height,
         aes: {
           fillColor: i(e.fillColor),
           lineColor: i(e.lineColor),
@@ -124,6 +125,7 @@ function B(r, l, p, u, d) {
         type: "stackedArea",
         normalize: e.normalize,
         showBars: e.showBars,
+        height: e.height,
         aes: {
           fillColor: i(e.fillColor),
           lineColor: i(e.lineColor),
@@ -187,13 +189,13 @@ function B(r, l, p, u, d) {
 }
 function z(r, l, p, u) {
   if (r) {
-    const d = g(l) ? l : { column: r.value, range: _ }, o = [1 / 0, -1 / 0];
+    const d = T(l) ? l : { column: r.value, range: _ }, o = [1 / 0, -1 / 0];
     return p.values[r.value].forEach((n) => {
       const c = Number(n);
       c < o[0] && (o[0] = c), c > o[1] && (o[1] = c);
     }), { columnName: r, domain: o, range: [d.range.min, d.range.max] };
   }
-  return g(l) ? u : l ?? u;
+  return T(l) ? u : l ?? u;
 }
 function w(r, l, p, u) {
   const d = p.find((n) => n.value === r);
@@ -222,8 +224,8 @@ function R(r, l, p, u, d, o, n = [], c = V) {
   function t(a, s, D, G = !1) {
     var v;
     if (s.length) {
-      const O = s.length ? (v = o.getSourceInfo(s[0])) == null ? void 0 : v.type : void 0, E = O === "String" || !G ? { type: "grouping", value: s[0] } : w(s[0], N(F), n, p), T = d[s[0]];
-      return a === null || O === "String" || !G || !P(T) ? E : w(s[0], T, n, p);
+      const O = s.length ? (v = o.getSourceInfo(s[0])) == null ? void 0 : v.type : void 0, E = O === "String" || !G ? { type: "grouping", value: s[0] } : w(s[0], N(F), n, p), g = d[s[0]];
+      return a === null || O === "String" || !G || !P(g) ? E : w(s[0], g, n, p);
     }
     return typeof a == "object" ? D : a;
   }

package/dist/GraphMaker/utils/createChartSettingsForRender/getLayersDataFromForms.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"getLayersDataFromForms.js","sources":["../../../../src/GraphMaker/utils/createChartSettingsForRender/getLayersDataFromForms.ts"],"sourcesContent":["import {\n ColorAes,\n getDefaultLayersSettings,\n NumberRange,\n LayersSettings,\n MappingLink,\n DiscreteStatisticsState,\n ColumnNameSchema,\n ContinuousDataMappingSize,\n isContinuousDataMapping,\n ContinuousDataMappingForGraph\n} from '../../constantsCommon';\nimport {\n Layer,\n ReactiveState\n} from '../../types';\nimport {\n DiscreteUIState, InputGuide,\n InputState,\n PlotDataAndSettings,\n ScatterplotUIState\n} from '@milaboratories/pf-plots';\nimport { DotShape, LineType } from '../../components/AesSettings/types';\nimport {\n AMINOACID_COLOR_MAPPING,\n DEFAULT_BLACK,\n DEFAULT_CONTINUOUS_PALETTE,\n DEFAULT_DOT_SHAPE, NUCLEOTIDE_COLOR_MAPPING,\n PALETTE_MAP\n} from '../../constantsAesthetic';\nimport {\n AestheticMappingContinuous, createContinuousMappingFromPalette,\n DEFAULT_DOT_RANGE,\n DEFAULT_DOT_SIZE\n} from '../../dataBindAes';\nimport { ScatterplotSettings } from '@milaboratories/miplots4';\nimport { isAestheticMappingContinuous } from '../../dataBindAes';\n\nexport function getStatLayers(statisticsSettings: DiscreteStatisticsState) {\n const layers: ChartLayerSettings[] = [];\n if (\n statisticsSettings.overall.data.testMethod &&\n statisticsSettings.overall.validity.testMethod\n ) {\n layers.push({\n type: 'stat',\n statType: 'overall',\n testMethod: statisticsSettings.overall.data.testMethod\n });\n }\n if (\n statisticsSettings.referenceGroup.data.testMethod &&\n statisticsSettings.referenceGroup.validity.testMethod &&\n statisticsSettings.referenceGroup.validity.referenceGroup\n ) {\n const layer: ChartLayerSettings = {\n type: 'stat',\n statType: 'referenceGroup',\n testMethod: statisticsSettings.referenceGroup.data.testMethod,\n referenceGroup: statisticsSettings.referenceGroup.data.referenceGroup,\n format: statisticsSettings.referenceGroup.data.format,\n ns: statisticsSettings.referenceGroup.data.ns\n };\n if (statisticsSettings.referenceGroup.data.correctionMethod !== 'none') {\n layer.correctionMethod =\n statisticsSettings.referenceGroup.data.correctionMethod;\n }\n layers.push(layer);\n }\n if (\n statisticsSettings.pairwise.data.testMethod &&\n statisticsSettings.pairwise.validity.testMethod\n ) {\n const layer: ChartLayerSettings = {\n type: 'stat',\n statType: 'pairwise',\n testMethod: statisticsSettings.pairwise.data.testMethod,\n format: statisticsSettings.pairwise.data.format,\n ns: statisticsSettings.pairwise.data.ns\n };\n if (statisticsSettings.referenceGroup.data.correctionMethod !== 'none') {\n layer.correctionMethod =\n statisticsSettings.referenceGroup.data.correctionMethod;\n }\n layers.push(layer);\n }\n return layers;\n}\n\nexport function getDiscreteLayersSettings(\n layers: Layer[],\n layerSettings: LayersSettings,\n statisticsSettings: DiscreteStatisticsState,\n optionsState: DiscreteUIState,\n inputGuide: InputGuide<InputState>\n): ChartLayerSettings[] {\n const result: ChartLayerSettings[] = [];\n const hasPrimaryGrouping =\n optionsState.components.primaryGrouping.selectorStates.length > 0;\n const hasSecondaryGrouping =\n optionsState.components.secondaryGrouping.selectorStates.length > 0;\n // If user didn't touch layers settings, some aes that can be mapped to groupings has 'null' value - we set them to secondary or primary grouping if available\n // for 'line', 'errorbar' layer it isn't possible to set primary grouping as a color aes\n function useDefaultColor(\n value: ColorAes \| null,\n onlySecondaryAvailable = false\n ) {\n if (value === null) {\n if (hasSecondaryGrouping) {\n return { type: 'secondaryGrouping' };\n }\n if (hasPrimaryGrouping && !onlySecondaryAvailable) {\n return { type: 'primaryGrouping' };\n }\n return { type: 'secondaryGrouping' };\n }\n return value;\n }\n\n layers.forEach((layer) => {\n if (layer === 'box') {\n const settings = layerSettings[layer];\n result.push({\n type: 'box',\n aes: {\n showOutliers: settings.showOutliers,\n dotShape: settings.dotShape,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n lineShape: settings.lineType,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'binnedDots') {\n const settings = layerSettings[layer];\n result.push({\n type: 'binnedDots',\n aes: {\n showOutliers: settings.showOutliers,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'jitteredDots') {\n const settings = layerSettings[layer];\n result.push({\n type: 'dot',\n aes: {\n showOutliers: settings.showOutliers,\n dotFill: useDefaultColor(settings.dotFill),\n dotShape: settings.dotShape,\n lineColor: settings.lineColor,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'violin') {\n const settings = layerSettings[layer];\n result.push({\n type: 'violin',\n stat: {\n trim: settings.trim\n },\n aes: {\n showQuartiles: settings.showQuartiles,\n medianLineStyle: settings.medianLineStyle,\n quartilesLineStyle: settings.quartilesLineStyle,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n lineShape: settings.lineType,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'bar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'bar',\n height: settings.height,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'stackedBar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'stackedBar',\n normalize: settings.normalize,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'stackedArea') {\n const settings = layerSettings[layer];\n result.push({\n type: 'stackedArea',\n normalize: settings.normalize,\n showBars: settings.showBars,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n barsOpacity: settings.barsOpacity,\n areaOpacity: settings.areaOpacity,\n }\n });\n }\n if (layer === 'line') {\n const settings = layerSettings[layer];\n result.push({\n type: 'line',\n pointsValues: settings.pointsValues,\n emptyGroupValue: settings.emptyGroupValue ?? 0,\n aes: {\n lineColor: useDefaultColor(settings.lineColor, true),\n fillColor: useDefaultColor(settings.dotFill, true),\n lineShape: settings.lineType,\n dotShape: settings.dotShape,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'errorbar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'errorbar',\n pointsValues: settings.pointsValues,\n interval: settings.interval,\n aes: {\n lineColor: useDefaultColor(settings.lineColor, true),\n fillColor: useDefaultColor(settings.dotFill, true),\n dotShape: settings.dotShape,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'sina') {\n const settings = layerSettings[layer];\n result.push({\n type: 'sina',\n aes: {\n showOutliers: settings.showOutliers,\n dotFill: useDefaultColor(settings.dotFill),\n dotShape: settings.dotShape\n }\n });\n }\n if (layer === 'logo' && hasSecondaryGrouping) {\n const settings = layerSettings[layer];\n const secondaryGroupingInfo = inputGuide.getSourceInfo(optionsState.components.secondaryGrouping.selectorStates[0].selectedSource);\n const isProtein = secondaryGroupingInfo.spec.domain?.['pl7.app/alphabet'] === 'aminoacid';\n result.push({\n type: 'logo',\n normalize: settings.normalize,\n aes: {\n opacity: settings.opacity,\n dotFill: isProtein ? AMINOACID_COLOR_MAPPING : NUCLEOTIDE_COLOR_MAPPING\n }\n });\n }\n });\n if (hasPrimaryGrouping && !hasSecondaryGrouping) {\n result.push(...getStatLayers(statisticsSettings));\n }\n return result;\n}\n\nfunction getDotSize(\n column: ColumnNameSchema \| undefined,\n dotSize: ContinuousDataMappingSize \| number \| null,\n dataByColumns: PlotDataAndSettings['data']['byColumns'],\n defaultDotSize: number\n): number \| { columnName: ColumnNameSchema, domain: number[], range: number[] } {\n if (column) {\n const mapping = isContinuousDataMapping(dotSize) ? dotSize : { column: column.value, range: DEFAULT_DOT_RANGE };\n const domain = [Infinity, -Infinity];\n dataByColumns.values[column.value].forEach((v) => {\n const value = Number(v);\n if (value < domain[0]) {\n domain[0] = value;\n }\n if (value > domain[1]) {\n domain[1] = value;\n }\n });\n return { columnName: column, domain, range: [mapping.range.min, mapping.range.max] };\n }\n return isContinuousDataMapping(dotSize) ? defaultDotSize : dotSize ?? defaultDotSize;\n}\n\nfunction getContinuousColor<T extends string>(\n columnKey: string,\n value: AestheticMappingContinuous,\n groupingColumns: ColumnNameSchema[],\n dataByColumns: PlotDataAndSettings['data']['byColumns']\n): T \| ContinuousDataMappingForGraph<T> {\n const column = groupingColumns.find(groupingColumn => groupingColumn.value === columnKey);\n let domain = [Infinity, -Infinity];\n if (column) {\n const { range, palette, midPoint, log } = value;\n const minValueMissed = range?.minValue === null \|\| range?.minValue === undefined;\n const maxValueMissed = range?.maxValue === null \|\| range?.maxValue === undefined;\n if (minValueMissed \|\| maxValueMissed) {\n dataByColumns.values[column.value].forEach((v) => {\n const value = Number(v);\n if (minValueMissed && value < domain[0]) {\n domain[0] = value;\n }\n if (maxValueMissed && value > domain[1]) {\n domain[1] = value;\n }\n });\n }\n if (!minValueMissed) {\n domain[0] = range?.minValue as number;\n }\n if (!maxValueMissed) {\n domain[1] = range?.maxValue as number;\n }\n if (midPoint !== null && midPoint !== undefined) {\n const maxDistance = Math.max(Math.abs(midPoint - domain[0]), Math.abs(midPoint - domain[1]));\n domain[0] = midPoint - maxDistance;\n domain[1] = midPoint + maxDistance;\n }\n\n return {\n columnName: column,\n domain,\n range: PALETTE_MAP[palette].colors,\n type: log ? 'log' : 'linear'\n } as ContinuousDataMappingForGraph<T>;\n }\n return DEFAULT_BLACK as T;\n}\n\nexport function getScatterplotLayersSettings(\n layers: Layer[],\n layerSettings: ReturnType<typeof getDefaultLayersSettings>,\n dataByColumns: PlotDataAndSettings['data']['byColumns'],\n optionsState: ScatterplotUIState,\n dataBindAes: ReactiveState['dataBindAes'],\n inputGuide: InputGuide<InputState>,\n groupingSchema: ColumnNameSchema[] = [],\n defaultDotSize = DEFAULT_DOT_SIZE\n): ScatterplotSettings['layers'] {\n const result: ScatterplotSettings['layers'] = [];\n\n function useDefault<T extends string>(value: T \| MappingLink \| null, columns: string[], defaultValue: T, continousAvailable = false): T \| {\n type: 'grouping',\n value: string\n } \| ContinuousDataMappingForGraph<T> {\n if (columns.length) {\n const valueType = columns.length ? inputGuide.getSourceInfo(columns[0])?.type : undefined;\n const defaultByColumn = (valueType === 'String' \|\| !continousAvailable)\n ? { type: 'grouping', value: columns[0] } as { type: 'grouping', value: string }\n : getContinuousColor<T>(columns[0], createContinuousMappingFromPalette(DEFAULT_CONTINUOUS_PALETTE), groupingSchema, dataByColumns);\n\n const savedMapping = dataBindAes[columns[0]];\n\n if (value === null \|\| (valueType === 'String' \|\| !continousAvailable) \|\| !isAestheticMappingContinuous(savedMapping)) {\n return defaultByColumn;\n }\n return getContinuousColor<T>(columns[0], savedMapping as AestheticMappingContinuous, groupingSchema, dataByColumns);\n }\n\n return typeof value === 'object' ? defaultValue : value as T;\n }\n\n const grouping = optionsState.components.grouping.selectorStates.map((s) => s.selectedSource);\n const shape = optionsState.components.shape?.selectorStates.map((s) => s.selectedSource) ?? 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1	+ {"version":3,"file":"getLayersDataFromForms.js","sources":["../../../../src/GraphMaker/utils/createChartSettingsForRender/getLayersDataFromForms.ts"],"sourcesContent":["import {\n ColorAes,\n getDefaultLayersSettings,\n NumberRange,\n LayersSettings,\n MappingLink,\n DiscreteStatisticsState,\n ColumnNameSchema,\n ContinuousDataMappingSize,\n isContinuousDataMapping,\n ContinuousDataMappingForGraph\n} from '../../constantsCommon';\nimport {\n Layer,\n ReactiveState\n} from '../../types';\nimport {\n DiscreteUIState, InputGuide,\n InputState,\n PlotDataAndSettings,\n ScatterplotUIState\n} from '@milaboratories/pf-plots';\nimport { DotShape, LineType } from '../../components/AesSettings/types';\nimport {\n AMINOACID_COLOR_MAPPING,\n DEFAULT_BLACK,\n DEFAULT_CONTINUOUS_PALETTE,\n DEFAULT_DOT_SHAPE, NUCLEOTIDE_COLOR_MAPPING,\n PALETTE_MAP\n} from '../../constantsAesthetic';\nimport {\n AestheticMappingContinuous, createContinuousMappingFromPalette,\n DEFAULT_DOT_RANGE,\n DEFAULT_DOT_SIZE\n} from '../../dataBindAes';\nimport { ScatterplotSettings } from '@milaboratories/miplots4';\nimport { isAestheticMappingContinuous } from '../../dataBindAes';\n\nexport function getStatLayers(statisticsSettings: DiscreteStatisticsState) {\n const layers: ChartLayerSettings[] = [];\n if (\n statisticsSettings.overall.data.testMethod &&\n statisticsSettings.overall.validity.testMethod\n ) {\n layers.push({\n type: 'stat',\n statType: 'overall',\n testMethod: statisticsSettings.overall.data.testMethod\n });\n }\n if (\n statisticsSettings.referenceGroup.data.testMethod &&\n statisticsSettings.referenceGroup.validity.testMethod &&\n statisticsSettings.referenceGroup.validity.referenceGroup\n ) {\n const layer: ChartLayerSettings = {\n type: 'stat',\n statType: 'referenceGroup',\n testMethod: statisticsSettings.referenceGroup.data.testMethod,\n referenceGroup: statisticsSettings.referenceGroup.data.referenceGroup,\n format: statisticsSettings.referenceGroup.data.format,\n ns: statisticsSettings.referenceGroup.data.ns\n };\n if (statisticsSettings.referenceGroup.data.correctionMethod !== 'none') {\n layer.correctionMethod =\n statisticsSettings.referenceGroup.data.correctionMethod;\n }\n layers.push(layer);\n }\n if (\n statisticsSettings.pairwise.data.testMethod &&\n statisticsSettings.pairwise.validity.testMethod\n ) {\n const layer: ChartLayerSettings = {\n type: 'stat',\n statType: 'pairwise',\n testMethod: statisticsSettings.pairwise.data.testMethod,\n format: statisticsSettings.pairwise.data.format,\n ns: statisticsSettings.pairwise.data.ns\n };\n if (statisticsSettings.referenceGroup.data.correctionMethod !== 'none') {\n layer.correctionMethod =\n statisticsSettings.referenceGroup.data.correctionMethod;\n }\n layers.push(layer);\n }\n return layers;\n}\n\nexport function getDiscreteLayersSettings(\n layers: Layer[],\n layerSettings: LayersSettings,\n statisticsSettings: DiscreteStatisticsState,\n optionsState: DiscreteUIState,\n inputGuide: InputGuide<InputState>\n): ChartLayerSettings[] {\n const result: ChartLayerSettings[] = [];\n const hasPrimaryGrouping =\n optionsState.components.primaryGrouping.selectorStates.length > 0;\n const hasSecondaryGrouping =\n optionsState.components.secondaryGrouping.selectorStates.length > 0;\n // If user didn't touch layers settings, some aes that can be mapped to groupings has 'null' value - we set them to secondary or primary grouping if available\n // for 'line', 'errorbar' layer it isn't possible to set primary grouping as a color aes\n function useDefaultColor(\n value: ColorAes \| null,\n onlySecondaryAvailable = false\n ) {\n if (value === null) {\n if (hasSecondaryGrouping) {\n return { type: 'secondaryGrouping' };\n }\n if (hasPrimaryGrouping && !onlySecondaryAvailable) {\n return { type: 'primaryGrouping' };\n }\n return { type: 'secondaryGrouping' };\n }\n return value;\n }\n\n layers.forEach((layer) => {\n if (layer === 'box') {\n const settings = layerSettings[layer];\n result.push({\n type: 'box',\n aes: {\n showOutliers: settings.showOutliers,\n dotShape: settings.dotShape,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n lineShape: settings.lineType,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'binnedDots') {\n const settings = layerSettings[layer];\n result.push({\n type: 'binnedDots',\n aes: {\n showOutliers: settings.showOutliers,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'jitteredDots') {\n const settings = layerSettings[layer];\n result.push({\n type: 'dot',\n aes: {\n showOutliers: settings.showOutliers,\n dotFill: useDefaultColor(settings.dotFill),\n dotShape: settings.dotShape,\n lineColor: settings.lineColor,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'violin') {\n const settings = layerSettings[layer];\n result.push({\n type: 'violin',\n stat: {\n trim: settings.trim\n },\n aes: {\n showQuartiles: settings.showQuartiles,\n medianLineStyle: settings.medianLineStyle,\n quartilesLineStyle: settings.quartilesLineStyle,\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n lineShape: settings.lineType,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'bar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'bar',\n height: settings.height,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'stackedBar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'stackedBar',\n normalize: settings.normalize,\n height: settings.height,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'stackedArea') {\n const settings = layerSettings[layer];\n result.push({\n type: 'stackedArea',\n normalize: settings.normalize,\n showBars: settings.showBars,\n height: settings.height,\n aes: {\n fillColor: useDefaultColor(settings.fillColor),\n lineColor: useDefaultColor(settings.lineColor),\n barsOpacity: settings.barsOpacity,\n areaOpacity: settings.areaOpacity,\n }\n });\n }\n if (layer === 'line') {\n const settings = layerSettings[layer];\n result.push({\n type: 'line',\n pointsValues: settings.pointsValues,\n emptyGroupValue: settings.emptyGroupValue ?? 0,\n aes: {\n lineColor: useDefaultColor(settings.lineColor, true),\n fillColor: useDefaultColor(settings.dotFill, true),\n lineShape: settings.lineType,\n dotShape: settings.dotShape,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'errorbar') {\n const settings = layerSettings[layer];\n result.push({\n type: 'errorbar',\n pointsValues: settings.pointsValues,\n interval: settings.interval,\n aes: {\n lineColor: useDefaultColor(settings.lineColor, true),\n fillColor: useDefaultColor(settings.dotFill, true),\n dotShape: settings.dotShape,\n opacity: settings.opacity\n }\n });\n }\n if (layer === 'sina') {\n const settings = layerSettings[layer];\n result.push({\n type: 'sina',\n aes: {\n showOutliers: settings.showOutliers,\n dotFill: useDefaultColor(settings.dotFill),\n dotShape: settings.dotShape\n }\n });\n }\n if (layer === 'logo' && hasSecondaryGrouping) {\n const settings = layerSettings[layer];\n const secondaryGroupingInfo = inputGuide.getSourceInfo(optionsState.components.secondaryGrouping.selectorStates[0].selectedSource);\n const isProtein = secondaryGroupingInfo.spec.domain?.['pl7.app/alphabet'] === 'aminoacid';\n result.push({\n type: 'logo',\n normalize: settings.normalize,\n aes: {\n opacity: settings.opacity,\n dotFill: isProtein ? AMINOACID_COLOR_MAPPING : NUCLEOTIDE_COLOR_MAPPING\n }\n });\n }\n });\n if (hasPrimaryGrouping && !hasSecondaryGrouping) {\n result.push(...getStatLayers(statisticsSettings));\n }\n return result;\n}\n\nfunction getDotSize(\n column: ColumnNameSchema \| undefined,\n dotSize: ContinuousDataMappingSize \| number \| null,\n dataByColumns: PlotDataAndSettings['data']['byColumns'],\n defaultDotSize: number\n): number \| { columnName: ColumnNameSchema, domain: number[], range: number[] } {\n if (column) {\n const mapping = isContinuousDataMapping(dotSize) ? dotSize : { column: column.value, range: DEFAULT_DOT_RANGE };\n const domain = [Infinity, -Infinity];\n dataByColumns.values[column.value].forEach((v) => {\n const value = Number(v);\n if (value < domain[0]) {\n domain[0] = value;\n }\n if (value > domain[1]) {\n domain[1] = value;\n }\n });\n return { columnName: column, domain, range: [mapping.range.min, mapping.range.max] };\n }\n return isContinuousDataMapping(dotSize) ? defaultDotSize : dotSize ?? defaultDotSize;\n}\n\nfunction getContinuousColor<T extends string>(\n columnKey: string,\n value: AestheticMappingContinuous,\n groupingColumns: ColumnNameSchema[],\n dataByColumns: PlotDataAndSettings['data']['byColumns']\n): T \| ContinuousDataMappingForGraph<T> {\n const column = groupingColumns.find(groupingColumn => groupingColumn.value === columnKey);\n let domain = [Infinity, -Infinity];\n if (column) {\n const { range, palette, midPoint, log } = value;\n const minValueMissed = range?.minValue === null \|\| range?.minValue === undefined;\n const maxValueMissed = range?.maxValue === null \|\| range?.maxValue === undefined;\n if (minValueMissed \|\| maxValueMissed) {\n dataByColumns.values[column.value].forEach((v) => {\n const value = Number(v);\n if (minValueMissed && value < domain[0]) {\n domain[0] = value;\n }\n if (maxValueMissed && value > domain[1]) {\n domain[1] = value;\n }\n });\n }\n if (!minValueMissed) {\n domain[0] = range?.minValue as number;\n }\n if (!maxValueMissed) {\n domain[1] = range?.maxValue as number;\n }\n if (midPoint !== null && midPoint !== undefined) {\n const maxDistance = Math.max(Math.abs(midPoint - domain[0]), Math.abs(midPoint - domain[1]));\n domain[0] = midPoint - maxDistance;\n domain[1] = midPoint + maxDistance;\n }\n\n return {\n columnName: column,\n domain,\n range: PALETTE_MAP[palette].colors,\n type: log ? 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package/dist/node_modules/@milaboratories/miplots4/dist/bubble/BubbleSettingsImpl.js CHANGED Viewed

@@ -1,4 +1,4 @@
-import { DEFAULT_WIDTH_SMALL as v, DEFAULT_WIDTH as A, DEFAULT_HEIGHT_SMALL as y, DEFAULT_HEIGHT as b, BLACK as g } from "../constants.js";
+import { DEFAULT_WIDTH_SMALL as g, DEFAULT_WIDTH as C, DEFAULT_HEIGHT_SMALL as v, DEFAULT_HEIGHT as x, BLACK as A } from "../constants.js";
 import "../types/common.js";
 import "../types/discrete.js";
 import "../types/scatterplot.js";
@@ -6,21 +6,21 @@ import "../types/heatmap.js";
 import "../types/dendro.js";
 import "../types/histogram.js";
 import { BubblesSettingsSchema as f } from "../types/bubble.js";
-import x from "../node_modules/lodash/lodash.js";
+import b from "../node_modules/lodash/lodash.js";
 var S = Object.defineProperty, L = (s, t, e) => t in s ? S(s, t, { enumerable: !0, configurable: !0, writable: !0, value: e }) : s[t] = e, i = (s, t, e) => L(s, typeof t != "symbol" ? t + "" : t, e);
-class k {
+class D {
   constructor(t) {
-    i(this, "id"), i(this, "type", "bubble"), i(this, "facetSettings"), i(this, "valueColumnSize"), i(this, "valueColumnColor"), i(this, "xColumn"), i(this, "yColumn"), i(this, "facetBy"), i(this, "normalization"), i(this, "NAValueAs"), i(this, "chartSettings"), i(this, "aes");
-    var e, l, a, n, u, r, h, m, c, p;
-    f.parse(t), this.id = x.uniqueId("settings"), this.facetSettings = { titlePosition: "left", ...t.facetSettings }, this.facetBy = t.facetBy ?? [], this.valueColumnSize = t.valueSize, this.valueColumnColor = t.valueColor, this.xColumn = t.xColumn, this.yColumn = t.yColumn, this.NAValueAs = t.NAValueAs ?? null, this.normalization = t.normalization ?? null;
-    const o = ((e = t.size) == null ? void 0 : e.cellSize) ?? null, C = o ? null : ((l = t == null ? void 0 : t.size) == null ? void 0 : l.width) ?? (this.facetBy.length ? v : A), d = o ? null : ((a = t == null ? void 0 : t.size) == null ? void 0 : a.height) ?? (this.facetBy.length ? y : b);
+    i(this, "id"), i(this, "type", "bubble"), i(this, "facetSettings"), i(this, "valueColumnSize"), i(this, "valueColumnColor"), i(this, "xColumn"), i(this, "xGroupBy"), i(this, "yColumn"), i(this, "yGroupBy"), i(this, "facetBy"), i(this, "normalization"), i(this, "aggregation"), i(this, "NAValueAs"), i(this, "keysOrder"), i(this, "chartSettings"), i(this, "aes");
+    var e, l, a, r, n, u, h, m, p, y;
+    f.parse(t), this.id = b.uniqueId("settings"), this.facetSettings = { titlePosition: "left", ...t.facetSettings }, this.facetBy = t.facetBy ?? [], this.valueColumnSize = t.valueSize, this.valueColumnColor = t.valueColor, this.xColumn = t.xColumn, this.xGroupBy = t.xGroupBy ?? [], this.yColumn = t.yColumn, this.yGroupBy = t.yGroupBy ?? [], this.NAValueAs = t.NAValueAs ?? null, this.keysOrder = t.keysOrder ?? {}, this.normalization = t.normalization ?? null;
+    const o = ((e = t.size) == null ? void 0 : e.cellSize) ?? null, c = o ? null : ((l = t == null ? void 0 : t.size) == null ? void 0 : l.width) ?? (this.facetBy.length ? g : C), d = o ? null : ((a = t == null ? void 0 : t.size) == null ? void 0 : a.height) ?? (this.facetBy.length ? v : x);
     this.chartSettings = {
-      size: { width: C, height: d, cellSize: o },
+      size: { width: c, height: d, cellSize: o },
       title: {
         position: "center",
         show: !0,
         ...t.title,
-        name: ((n = t.title) == null ? void 0 : n.name) ?? "Chart"
+        name: ((r = t.title) == null ? void 0 : r.name) ?? "Chart"
       },
       yAxis: {
         title: t.yColumn.label ?? t.yColumn.value,
@@ -42,7 +42,7 @@ class k {
         sorting: "asc",
         ...t.xAxis
       },
-      frame: { type: ((u = t.frame) == null ? void 0 : u.type) ?? "full" },
+      frame: { type: ((n = t.frame) == null ? void 0 : n.type) ?? "full" },
       legend: {
         show: !0,
         position: "right",
@@ -52,16 +52,21 @@ class k {
         show: !0,
         ...t.tooltips
       }
+    }, this.aggregation = {
+      x: !1,
+      y: !1,
+      method: "min",
+      ...t.aggregation
     }, this.aes = {
-      minRadius: ((r = t.aes) == null ? void 0 : r.minRadius) ?? 3,
+      minRadius: ((u = t.aes) == null ? void 0 : u.minRadius) ?? 3,
       maxRadius: ((h = t.aes) == null ? void 0 : h.maxRadius) ?? 20,
       colorsList: ((m = t.aes) == null ? void 0 : m.colorsList) ?? ["black", "white", "red"],
-      cellStrokeColor: ((c = t.aes) == null ? void 0 : c.cellStrokeColor) ?? g,
-      emptyCellColor: ((p = t.aes) == null ? void 0 : p.emptyCellColor) ?? "white"
+      cellStrokeColor: ((p = t.aes) == null ? void 0 : p.cellStrokeColor) ?? A,
+      emptyCellColor: ((y = t.aes) == null ? void 0 : y.emptyCellColor) ?? "white"
     };
   }
 }
 export {
-  k as BubbleSettingsImpl
+  D as BubbleSettingsImpl
 };
 //# sourceMappingURL=BubbleSettingsImpl.js.map

package/dist/node_modules/@milaboratories/miplots4/dist/bubble/BubbleSettingsImpl.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"BubbleSettingsImpl.js","sources":["../../../../../../node_modules/@milaboratories/miplots4/src/bubble/BubbleSettingsImpl.ts"],"sourcesContent":["import {BLACK, DEFAULT_HEIGHT, DEFAULT_HEIGHT_SMALL, DEFAULT_WIDTH, DEFAULT_WIDTH_SMALL} from '../constants';\nimport {BubblesSettingsSchema} from '../types';\nimport type {\n BubbleSettings,\n ColumnName,\n FrameType,\n LegendPosition,\n NormalizationDirection,\n NormalizationMethod,\n SettingsInterface,\n TitlePosition,\n} from '../types';\nimport lodash from 'lodash';\n\nexport class BubbleSettingsImpl implements SettingsInterface {\n readonly id: string;\n readonly type = 'bubble';\n readonly facetSettings: {\n nRows?: number;\n nCols?: number;\n titlePosition: 'left' \| 'center' \| 'right';\n };\n readonly valueColumnSize: ColumnName;\n readonly valueColumnColor: ColumnName;\n readonly xColumn: ColumnName;\n readonly yColumn: ColumnName;\n readonly facetBy: ColumnName[];\n readonly normalization: {\n direction: NormalizationDirection;\n method: NormalizationMethod;\n colorRange?: number[];\n sizeRange?: number[];\n } \| null;\n readonly NAValueAs: number \| null;\n readonly chartSettings: {\n readonly size: {width: number \| null; height: number \| null, cellSize: number \| null};\n readonly title: {name: string; show: boolean; position: TitlePosition};\n readonly yAxis: {\n title: string;\n showTicks: boolean;\n showTitle: boolean;\n showAxisLabels: boolean;\n position: 'left' \| 'right';\n axisLabelsAngle: 0 \| 45 \| 90;\n sorting: 'asc' \| 'desc';\n };\n readonly xAxis: {\n title: string;\n showTicks: boolean;\n showTitle: boolean;\n showAxisLabels: boolean;\n position: 'bottom' \| 'top';\n axisLabelsAngle: 0 \| 45 \| 90;\n sorting: 'asc' \| 'desc';\n };\n readonly frame: {type: FrameType};\n readonly legend: {show: boolean; position: LegendPosition};\n readonly tooltips: {show: boolean; content?: ColumnName[]};\n };\n readonly aes: {\n minRadius: number;\n maxRadius: number;\n colorsList: string[];\n cellStrokeColor: string;\n emptyCellColor: string;\n };\n\n constructor(settings: BubbleSettings) {\n BubblesSettingsSchema.parse(settings);\n this.id = lodash.uniqueId('settings');\n this.facetSettings = {titlePosition: 'left', ...settings.facetSettings};\n this.facetBy = settings.facetBy ?? [];\n this.valueColumnSize = settings.valueSize;\n this.valueColumnColor = settings.valueColor;\n this.xColumn = settings.xColumn;\n this.yColumn = settings.yColumn;\n this.NAValueAs = settings.NAValueAs ?? null;\n this.normalization = settings.normalization ?? null;\n\n const cellSize = settings.size?.cellSize ?? null;\n const width = cellSize ? null : settings?.size?.width ?? (this.facetBy.length ? DEFAULT_WIDTH_SMALL : DEFAULT_WIDTH);\n const height = cellSize ? null : settings?.size?.height ?? (this.facetBy.length ? DEFAULT_HEIGHT_SMALL : DEFAULT_HEIGHT);\n this.chartSettings = {\n size: {width, height, cellSize},\n title: {\n position: 'center',\n show: true,\n ...settings.title,\n name: settings.title?.name ?? 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1	+ {"version":3,"file":"BubbleSettingsImpl.js","sources":["../../../../../../node_modules/@milaboratories/miplots4/src/bubble/BubbleSettingsImpl.ts"],"sourcesContent":["import { BLACK, DEFAULT_HEIGHT, DEFAULT_HEIGHT_SMALL, DEFAULT_WIDTH, DEFAULT_WIDTH_SMALL } from '../constants';\nimport { BubblesSettingsSchema } from '../types';\nimport type {\n AggregationMethod,\n BubbleSettings,\n ColumnName,\n FrameType,\n LegendPosition,\n NormalizationDirection,\n NormalizationMethod,\n SettingsInterface,\n TitlePosition,\n} from '../types';\nimport lodash from 'lodash';\n\nexport class BubbleSettingsImpl implements SettingsInterface {\n readonly id: string;\n readonly type = 'bubble';\n readonly facetSettings: {\n nRows?: number;\n nCols?: number;\n titlePosition: 'left' \| 'center' \| 'right';\n };\n readonly valueColumnSize: ColumnName;\n readonly valueColumnColor: ColumnName;\n readonly xColumn: ColumnName;\n readonly xGroupBy: ColumnName[];\n readonly yColumn: ColumnName;\n readonly yGroupBy: ColumnName[];\n readonly facetBy: ColumnName[];\n readonly normalization: {\n direction: NormalizationDirection;\n method: NormalizationMethod;\n colorRange?: number[];\n sizeRange?: number[];\n } \| null;\n readonly aggregation: {\n x: boolean;\n y: boolean;\n method: AggregationMethod;\n };\n readonly NAValueAs: number \| null;\n readonly keysOrder: Record<string, string[]>;\n readonly chartSettings: {\n readonly size: { width: number \| null; height: number \| null, cellSize: number \| null };\n readonly title: { name: string; show: boolean; position: TitlePosition };\n readonly yAxis: {\n title: string;\n showTicks: boolean;\n showTitle: boolean;\n showAxisLabels: boolean;\n position: 'left' \| 'right';\n axisLabelsAngle: 0 \| 45 \| 90;\n sorting: 'asc' \| 'desc';\n };\n readonly xAxis: {\n title: string;\n showTicks: boolean;\n showTitle: boolean;\n showAxisLabels: boolean;\n position: 'bottom' \| 'top';\n axisLabelsAngle: 0 \| 45 \| 90;\n sorting: 'asc' \| 'desc';\n };\n readonly frame: { type: FrameType };\n readonly legend: { show: boolean; position: LegendPosition };\n readonly tooltips: { show: boolean; content?: ColumnName[] };\n };\n readonly aes: {\n minRadius: number;\n maxRadius: number;\n colorsList: string[];\n cellStrokeColor: string;\n emptyCellColor: string;\n };\n\n constructor(settings: BubbleSettings) {\n BubblesSettingsSchema.parse(settings);\n this.id = lodash.uniqueId('settings');\n this.facetSettings = { titlePosition: 'left', ...settings.facetSettings };\n this.facetBy = settings.facetBy ?? 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