@milaboratories/graph-maker 1.1.155 → 1.1.156
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/GraphMaker/constantsCommon.d.ts +2 -0
- package/dist/GraphMaker/constantsCommon.d.ts.map +1 -1
- package/dist/GraphMaker/constantsCommon.js +29 -27
- package/dist/GraphMaker/constantsCommon.js.map +1 -1
- package/dist/GraphMaker/forms/AxesSettingsForm/HeatmapAxesSettingsForm.vue.d.ts.map +1 -1
- package/dist/GraphMaker/forms/AxesSettingsForm/HeatmapAxesSettingsForm.vue.js +215 -148
- package/dist/GraphMaker/forms/AxesSettingsForm/HeatmapAxesSettingsForm.vue.js.map +1 -1
- package/dist/GraphMaker/utils/createChartSettingsForRender/composeDendroSettings.d.ts +5 -0
- package/dist/GraphMaker/utils/createChartSettingsForRender/composeDendroSettings.d.ts.map +1 -1
- package/dist/GraphMaker/utils/createChartSettingsForRender/composeDiscreteSettings.d.ts +1 -0
- package/dist/GraphMaker/utils/createChartSettingsForRender/composeDiscreteSettings.d.ts.map +1 -1
- package/dist/GraphMaker/utils/createChartSettingsForRender/composeHeatmapSettings.d.ts +5 -0
- package/dist/GraphMaker/utils/createChartSettingsForRender/composeHeatmapSettings.d.ts.map +1 -1
- package/dist/GraphMaker/utils/createChartSettingsForRender/composeHeatmapSettings.js +24 -24
- package/dist/GraphMaker/utils/createChartSettingsForRender/composeHeatmapSettings.js.map +1 -1
- package/dist/GraphMaker/utils/createChartSettingsForRender/composeScatterplotSettings.d.ts +2 -0
- package/dist/GraphMaker/utils/createChartSettingsForRender/composeScatterplotSettings.d.ts.map +1 -1
- package/dist/GraphMaker/utils/createChartSettingsForRender/composeScatterplotUmapSettings.d.ts +2 -0
- package/dist/GraphMaker/utils/createChartSettingsForRender/composeScatterplotUmapSettings.d.ts.map +1 -1
- package/dist/node_modules/@milaboratories/miplots4/dist/MiPlots.js +22 -22
- package/dist/node_modules/@milaboratories/miplots4/dist/dendro/ChartRenderer.js +160 -156
- package/dist/node_modules/@milaboratories/miplots4/dist/dendro/ChartRenderer.js.map +1 -1
- package/dist/node_modules/@milaboratories/miplots4/dist/dendro/DendroSettingsImpl.js +31 -27
- package/dist/node_modules/@milaboratories/miplots4/dist/dendro/DendroSettingsImpl.js.map +1 -1
- package/dist/node_modules/@milaboratories/miplots4/dist/dendro/components/Chart.js +53 -53
- package/dist/node_modules/@milaboratories/miplots4/dist/dendro/components/Chart.js.map +1 -1
- package/dist/node_modules/@milaboratories/miplots4/dist/dendro/getHierarchyData.js +30 -24
- package/dist/node_modules/@milaboratories/miplots4/dist/dendro/getHierarchyData.js.map +1 -1
- package/dist/node_modules/@milaboratories/miplots4/dist/dendro/index.js +78 -77
- package/dist/node_modules/@milaboratories/miplots4/dist/dendro/index.js.map +1 -1
- package/dist/node_modules/@milaboratories/miplots4/dist/heatmap/ChartRenderer.js +267 -258
- package/dist/node_modules/@milaboratories/miplots4/dist/heatmap/ChartRenderer.js.map +1 -1
- package/dist/node_modules/@milaboratories/miplots4/dist/heatmap/HeatmapSettingsImpl.js +59 -54
- package/dist/node_modules/@milaboratories/miplots4/dist/heatmap/HeatmapSettingsImpl.js.map +1 -1
- package/dist/node_modules/@milaboratories/miplots4/dist/heatmap/components/Chart.js +91 -89
- package/dist/node_modules/@milaboratories/miplots4/dist/heatmap/components/Chart.js.map +1 -1
- package/dist/node_modules/@milaboratories/miplots4/dist/heatmap/components/ChartsGroup.js +17 -17
- package/dist/node_modules/@milaboratories/miplots4/dist/heatmap/getCells.js +98 -87
- package/dist/node_modules/@milaboratories/miplots4/dist/heatmap/getCells.js.map +1 -1
- package/dist/node_modules/@milaboratories/miplots4/dist/heatmap/index.js +98 -76
- package/dist/node_modules/@milaboratories/miplots4/dist/heatmap/index.js.map +1 -1
- package/dist/node_modules/@milaboratories/miplots4/dist/heatmap/utils/calculateCaptionTails.js +57 -57
- package/dist/node_modules/@milaboratories/miplots4/dist/heatmap/utils/calculateCaptionTails.js.map +1 -1
- package/dist/node_modules/@milaboratories/miplots4/dist/types/common.js +52 -51
- package/dist/node_modules/@milaboratories/miplots4/dist/types/common.js.map +1 -1
- package/dist/node_modules/@milaboratories/miplots4/dist/types/dendro.js +13 -8
- package/dist/node_modules/@milaboratories/miplots4/dist/types/dendro.js.map +1 -1
- package/dist/node_modules/@milaboratories/miplots4/dist/types/discrete.js +5 -5
- package/dist/node_modules/@milaboratories/miplots4/dist/types/heatmap.js +19 -11
- package/dist/node_modules/@milaboratories/miplots4/dist/types/heatmap.js.map +1 -1
- package/package.json +2 -2
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import v from "../node_modules/lodash/lodash.js";
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import X from "../node_modules/d3-array/src/deviation.js";
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import N from "../node_modules/d3-array/src/mean.js";
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const o = X(l), r = N(l);
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const m = [];
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m.push(...o.map((B) => [...B, c]));
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);
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function ne(l, o, r, m, c, B, G, $, O, T, d, F, K, H, J) {
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const j = l.columnNames.length ? l.getColumn(l.columnNames[0]).length : 0;
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j > ee && console.error(`Too many cells for graph rendering (${j})`);
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const P = c.length ? c.map((e) => K[e.value] ?? l.getColumnCategories(e.value)) : [["null"]], Q = B.length ? B.map((e) => K[e.value] ?? l.getColumnCategories(e.value)) : [["null"]], U = G.length ? G.map((e) => K[e.value] ?? l.getColumnCategories(e.value)) : [["null"]], D = L(P), w = L(Q), M = L(U), S = D.map((e) => e.join("_")), b = w.map((e) => e.join("_")), V = M.map((e) => e.join("_")), a = {
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meta: {
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facetKeys: S,
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xGroupKeys: b,
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yGroupKeys: V,
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xLabels: {},
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yGroupLabels: {},
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xDataByKeys: {},
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yDataByKeys: {},
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facetKeyValues:
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xGroupKeyValues:
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yGroupKeyValues:
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facetKeyValues: S.reduce((e, t, s) => (e[t] = D[s], e), {}),
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xGroupKeyValues: b.reduce((e, t, s) => (e[t] = w[s], e), {}),
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yGroupKeyValues: V.reduce((e, t, s) => (e[t] = M[s], e), {}),
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}, _ = o.valueLabels ?? o.value, q = r.valueLabels ?? r.value, W = $.filter((e) => e.axis === "x").map((e) => e.valueColumn.value), Z = $.filter((e) => e.axis === "y").map((e) => e.valueColumn.value), k = Object.values(O ?? {}).map((e) => e.value), A = Object.values(T ?? {}).map((e) => e.value), I = v.uniq([...W, ...k, _]), R = v.uniq([...Z, ...A, q]);
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const t = c.length ? c.map((u) => l.getColumnValue(u.value, e)).join("_") : "null", s = B.length ? B.map((u) => l.getColumnValue(u.value, e)).join("_") : "null", i = G.length ? G.map((u) => l.getColumnValue(u.value, e)).join("_") : "null", h = B.length ? B.map((u) => l.getColumnValue(u.valueLabels ?? u.value, e)).join(", ") : "", E = G.length ? G.map((u) => l.getColumnValue(u.valueLabels ?? u.value, e)).join(", ") : "";
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a.meta.xGroupLabels[s] = h, a.meta.yGroupLabels[i] = E;
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const n = String(l.getColumnValue(o.value, e)), y = String(l.getColumnValue(r.value, e)), p = l.getColumnValue(m.value, e) ?? F;
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}), a.facets[t].xKeysByGroups[s] || (a.facets[t].xKeysByGroups[s] = []), a.facets[t].yKeysByGroups[i] || (a.facets[t].yKeysByGroups[i] = []), a.facets[t].xKeys.push(n), a.facets[t].yKeys.push(y), a.facets[t].xKeysByGroups[s].push(n), a.facets[t].yKeysByGroups[i].push(y), a.facets[t].cells[n] || (a.facets[t].cells[n] = {}), a.meta.valueExtent[0] = Math.min(p, a.meta.valueExtent[0]), a.meta.valueExtent[1] = Math.max(p, a.meta.valueExtent[1]), a.facets[t].cells[n][y] && a.facets[t].cells[n][y].value !== p)
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throw Error(`More than 1 y-label value for y=${y}`);
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a.meta.xLabels[n] = String(x), a.meta.yLabels[y] = String(g), I.forEach((u) => {
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throw Error(`More than 1 value for x = ${n} and column = ${u}`);
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C || (a.meta.xDataByKeys[u][n] = l.getColumnValue(u, e));
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}), a.facets[t].cells[n][y] = {
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id: `${n}_${y}`,
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t.xKeys = K[o.value] ? v.intersection(K[o.value], s) : s, t.yKeys = K[r.value] ? v.intersection(K[r.value], i) : i, b.forEach((h) => {
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{"version":3,"file":"getCells.js","sources":["../../../../../../node_modules/@milaboratories/miplots4/src/heatmap/getCells.ts"],"sourcesContent":["import { deviation, extent, mean } from 'd3-array';\nimport lodash from 'lodash';\nimport type { DataFrame } from '../DataFrame';\nimport type { ColumnName, DataValue, NormalizationMethod } from '../types';\nimport type { HeatmapSettingsImpl } from './HeatmapSettingsImpl';\n\nconst MAX_RENDERED_CELLS_COUNT = 500000;\nfunction normalizeByStd(values:number[]) {\n const stdValue = deviation(values);\n const meanValue = mean(values);\n\n if (stdValue === undefined || meanValue === undefined || stdValue === 0) {\n return (v:number) => v;\n }\n return (v:number) => (v - meanValue) / stdValue;\n}\nfunction normalizeByMinMax(values:number[]) {\n const meanValue = mean(values);\n const [min, max] = extent(values);\n if (meanValue === undefined || min === undefined || max === undefined || max === min) {\n return (v:number) => v;\n }\n return (v:number) => (v - meanValue) / (max - min);\n}\n\nfunction getNormalizationFn(method:NormalizationMethod, values:number[]) {\n if (method === 'standardScaling') {\n return normalizeByStd(values);\n }\n if (method === 'meanNormalization') {\n return normalizeByMinMax(values);\n }\n return (v:number) => v;\n}\n\nexport type Cell = {\n isCell: true;\n idx: number;\n id: string;\n value: DataValue;\n normalizedValue: DataValue;\n x: DataValue;\n y: DataValue;\n};\n\nexport type GroupedCellsData = {\n meta: {\n facetKeys: string[];\n xGroupKeys: string[];\n yGroupKeys: string[];\n xKeysByGroups: Record<string, string[]>;\n yKeysByGroups: Record<string, string[]>;\n // for titles, if facet by more 1 columns title has several values separated by commas\n facetKeyValues: Record<string, string[]>;\n xGroupKeyValues: Record<string, string[]>;\n yGroupKeyValues: Record<string, string[]>;\n xLabels: Record<string, string>;\n yLabels: Record<string, string>;\n xGroupLabels: Record<string, string>;\n yGroupLabels: Record<string, string>;\n valueExtent: [number, number]; // for color scales\n // data for labels, annotations and dendrograms\n xDataByKeys: Record<string, Record<string, DataValue>>;\n yDataByKeys: Record<string, Record<string, DataValue>>;\n };\n //facet groups\n facets: Record<\n string,\n {\n // axis keys\n xKeys: string[];\n yKeys: string[];\n // axis keys grouped by group keys from meta\n xKeysByGroups: Record<string, string[]>;\n yKeysByGroups: Record<string, string[]>;\n // cells grouped by X, then by Y\n cells: Record<string, Record<string, Cell>>;\n }\n >;\n};\n\n// all combinations with 1 key from each list\nfunction getKeysCombinations(keysLists: string[][]) {\n if (!keysLists.length) {\n return [];\n }\n let result: string[][] = [[]];\n keysLists.forEach(keys => {\n const nextResult: string[][] = [];\n keys.forEach(key => {\n nextResult.push(...result.map(resultItem => [...resultItem, key]));\n });\n result = nextResult;\n });\n return result;\n}\n\nexport function getCells(\n data: DataFrame,\n xColumn: ColumnName,\n yColumn: ColumnName,\n valueColumn: ColumnName,\n facetBy: ColumnName[],\n xGroupBy: ColumnName[],\n yGroupBy: ColumnName[],\n annotations: HeatmapSettingsImpl['annotations'],\n dendrogramX: HeatmapSettingsImpl['dendrogramX'],\n dendrogramY: HeatmapSettingsImpl['dendrogramY'],\n normalization: HeatmapSettingsImpl['normalization'],\n NAValueAs: HeatmapSettingsImpl['NAValueAs'],\n): GroupedCellsData {\n const dataSize = data.columnNames.length ? data.getColumn(data.columnNames[0]).length : 0;\n if (dataSize > MAX_RENDERED_CELLS_COUNT) {\n console.error(`Too many cells for graph rendering (${dataSize})`);\n }\n const facetKeysLists = facetBy.length\n ? facetBy.map(column => data.getColumnCategories(column.value))\n : [['null']];\n const xGroupKeysLists = xGroupBy.length\n ? xGroupBy.map(column => data.getColumnCategories(column.value))\n : [['null']];\n const yGroupKeysLists = yGroupBy.length\n ? yGroupBy.map(column => data.getColumnCategories(column.value))\n : [['null']];\n const facetKeysCombinations = getKeysCombinations(facetKeysLists);\n const xGroupKeysCombinations = getKeysCombinations(xGroupKeysLists);\n const yGroupKeysCombinations = getKeysCombinations(yGroupKeysLists);\n\n const facetKeys = facetKeysCombinations.map(keys => keys.join('_'));\n const xGroupKeys = xGroupKeysCombinations.map(keys => keys.join('_'));\n const yGroupKeys = yGroupKeysCombinations.map(keys => keys.join('_'));\n\n const result: GroupedCellsData = {\n meta: {\n facetKeys,\n xGroupKeys,\n yGroupKeys,\n xKeysByGroups: {},\n yKeysByGroups: {},\n xLabels: {},\n yLabels: {},\n xGroupLabels: {},\n yGroupLabels: {},\n xDataByKeys: {},\n yDataByKeys: {},\n facetKeyValues: facetKeys.reduce((res: Record<string, string[]>, key, index) => {\n res[key] = facetKeysCombinations[index];\n return res;\n }, {}),\n xGroupKeyValues: xGroupKeys.reduce((res: Record<string, string[]>, key, index) => {\n res[key] = xGroupKeysCombinations[index];\n return res;\n }, {}),\n yGroupKeyValues: yGroupKeys.reduce((res: Record<string, string[]>, key, index) => {\n res[key] = yGroupKeysCombinations[index];\n return res;\n }, {}),\n valueExtent: [Infinity, -Infinity],\n },\n facets: {},\n };\n\n const xLabelsSource = xColumn.valueLabels ?? xColumn.value;\n const yLabelsSource = yColumn.valueLabels ?? yColumn.value;\n const annotationColumnsX = annotations.filter(item => item.axis === 'x').map(item => item.valueColumn.value);\n const annotationColumnsY = annotations.filter(item => item.axis === 'y').map(item => item.valueColumn.value);\n const dendrogramXColumns = Object.values(dendrogramX ?? {}).map(column => column.value);\n const dendrogramYColumns = Object.values(dendrogramY ?? {}).map(column => column.value);\n const additionalDataColumnsX = lodash.uniq([...annotationColumnsX, ...dendrogramXColumns, xLabelsSource]);\n const additionalDataColumnsY = lodash.uniq([...annotationColumnsY, ...dendrogramYColumns, yLabelsSource]);\n\n for (let i = 0; i < data.rowsCount; i++) {\n const facetKey = facetBy.length ? facetBy.map(column => data.getColumnValue(column.value, i)).join('_') : 'null';\n const xGroupKey = xGroupBy.length ? xGroupBy.map(column => data.getColumnValue(column.value, i)).join('_') : 'null';\n const yGroupKey = yGroupBy.length ? yGroupBy.map(column => data.getColumnValue(column.value, i)).join('_') : 'null';\n const xGroupLabel = xGroupBy.length ? xGroupBy.map(column => data.getColumnValue(column.valueLabels ?? column.value, i)).join(', ') : '';\n const yGroupLabel = yGroupBy.length ? yGroupBy.map(column => data.getColumnValue(column.valueLabels ?? column.value, i)).join(', ') : '';\n result.meta.xGroupLabels[xGroupKey] = xGroupLabel;\n result.meta.yGroupLabels[yGroupKey] = yGroupLabel;\n const x = String(data.getColumnValue(xColumn.value, i));\n const y = String(data.getColumnValue(yColumn.value, i));\n const value = (data.getColumnValue(valueColumn.value, i) ?? NAValueAs) as number | null;\n \n if (x === 'null' || y === 'null' || value === null) {\n continue;\n }\n\n if (!result.facets[facetKey]) {\n result.facets[facetKey] = {\n xKeys: [],\n yKeys: [],\n xKeysByGroups: {},\n yKeysByGroups: {},\n cells: {},\n };\n }\n if (!result.facets[facetKey].xKeysByGroups[xGroupKey]) {\n result.facets[facetKey].xKeysByGroups[xGroupKey] = [];\n }\n if (!result.facets[facetKey].yKeysByGroups[yGroupKey]) {\n result.facets[facetKey].yKeysByGroups[yGroupKey] = [];\n }\n result.facets[facetKey].xKeys.push(x);\n result.facets[facetKey].yKeys.push(y);\n result.facets[facetKey].xKeysByGroups[xGroupKey].push(x);\n result.facets[facetKey].yKeysByGroups[yGroupKey].push(y);\n\n if (!result.facets[facetKey].cells[x]) {\n result.facets[facetKey].cells[x] = {};\n }\n result.meta.valueExtent[0] = Math.min(value, result.meta.valueExtent[0]);\n result.meta.valueExtent[1] = Math.max(value, result.meta.valueExtent[1]);\n if (result.facets[facetKey].cells[x][y] && result.facets[facetKey].cells[x][y].value !== value) {\n throw Error(`More than 1 value for x=${x}, y=${y}`);\n }\n const xLabelsSourceValue = data.getColumnValue(xLabelsSource, i);\n if (result.meta.xLabels[x] && String(xLabelsSourceValue) !== result.meta.xLabels[x]) {\n throw Error(`More than 1 x-label value for x=${x}`);\n }\n const yLabelsSourceValue = data.getColumnValue(yLabelsSource, i);\n if (result.meta.yLabels[y] && String(yLabelsSourceValue) !== result.meta.yLabels[y]) {\n throw Error(`More than 1 y-label value for y=${y}`);\n }\n result.meta.xLabels[x] = String(xLabelsSourceValue);\n result.meta.yLabels[y] = String(yLabelsSourceValue);\n // data for labels, annotations and dendrograms by X\n additionalDataColumnsX.forEach(columnKey => {\n const isAddedColumn = typeof result.meta.xDataByKeys[columnKey] !== 'undefined';\n const isAddedValue = isAddedColumn && typeof result.meta.xDataByKeys[columnKey][x] !== 'undefined';\n if (!isAddedColumn) {\n result.meta.xDataByKeys[columnKey] = {};\n }\n if (isAddedValue && result.meta.xDataByKeys[columnKey][x] !== data.getColumnValue(columnKey, i)) {\n throw Error(`More than 1 value for x = ${x} and column = ${columnKey}`);\n }\n if (!isAddedValue) {\n result.meta.xDataByKeys[columnKey][x] = data.getColumnValue(columnKey, i);\n }\n });\n // data for labels, annotations and dendrograms by Y\n additionalDataColumnsY.forEach(columnKey => {\n const isAddedColumn = typeof result.meta.yDataByKeys[columnKey] !== 'undefined';\n const isAddedValue = isAddedColumn && typeof result.meta.yDataByKeys[columnKey][y] !== 'undefined';\n if (!isAddedColumn) {\n result.meta.yDataByKeys[columnKey] = {};\n }\n if (isAddedValue && result.meta.yDataByKeys[columnKey][y] !== data.getColumnValue(columnKey, i)) {\n throw Error(`More than 1 value for y = ${y} and column = ${columnKey}`);\n }\n if (!isAddedValue) {\n result.meta.yDataByKeys[columnKey][y] = data.getColumnValue(columnKey, i);\n }\n });\n result.facets[facetKey].cells[x][y] = {\n isCell: true,\n idx: i,\n id: `${x}_${y}`,\n x,\n y,\n value,\n normalizedValue: value,\n };\n }\n\n result.meta.facetKeys = result.meta.facetKeys.filter((key) => result.facets[key]); // filter only used;\n\n // make uniq x, y, x-group and y-group keys\n result.meta.facetKeys.forEach(facetKey => {\n const facet = result.facets[facetKey];\n facet.xKeys = lodash.uniq(facet.xKeys);\n facet.yKeys = lodash.uniq(facet.yKeys);\n xGroupKeys.forEach(xGroupKey => {\n result.facets[facetKey].xKeysByGroups[xGroupKey] = lodash.uniq(\n result.facets[facetKey].xKeysByGroups[xGroupKey]\n );\n });\n yGroupKeys.forEach(yGroupKey => {\n result.facets[facetKey].yKeysByGroups[yGroupKey] = lodash.uniq(\n result.facets[facetKey].yKeysByGroups[yGroupKey]\n );\n });\n });\n\n if (normalization) {\n const valueExtent = [Infinity, -Infinity] as [number, number];\n result.meta.facetKeys.forEach(facetKey => {\n const {xKeys, yKeys, cells} = result.facets[facetKey];\n const cellKeys = normalization.direction === 'row' ? xKeys : yKeys;\n const groupKeys = normalization.direction === 'row' ? yKeys : xKeys;\n const cellGetter = normalization.direction === 'row'\n ? 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{"version":3,"file":"getCells.js","sources":["../../../../../../node_modules/@milaboratories/miplots4/src/heatmap/getCells.ts"],"sourcesContent":["import { deviation, extent, mean } from 'd3-array';\nimport lodash from 'lodash';\nimport type { DataFrame } from '../DataFrame';\nimport type { ColumnName, DataValue, NormalizationMethod } from '../types';\nimport type { HeatmapSettingsImpl } from './HeatmapSettingsImpl';\n\nconst MAX_RENDERED_CELLS_COUNT = 500000;\nfunction normalizeByStd(values:number[]) {\n const stdValue = deviation(values);\n const meanValue = mean(values);\n\n if (stdValue === undefined || meanValue === undefined || stdValue === 0) {\n return (v:number) => v;\n }\n return (v:number) => (v - meanValue) / stdValue;\n}\nfunction normalizeByMinMax(values:number[]) {\n const meanValue = mean(values);\n const [min, max] = extent(values);\n if (meanValue === undefined || min === undefined || max === undefined || max === min) {\n return (v:number) => v;\n }\n return (v:number) => (v - meanValue) / (max - min);\n}\n\nfunction getNormalizationFn(method:NormalizationMethod, values:number[]) {\n if (method === 'standardScaling') {\n return normalizeByStd(values);\n }\n if (method === 'meanNormalization') {\n return normalizeByMinMax(values);\n }\n return (v:number) => v;\n}\n\nexport type Cell = {\n isCell: true;\n idx: number;\n id: string;\n value: DataValue;\n normalizedValue: DataValue;\n x: DataValue;\n y: DataValue;\n};\n\nexport type GroupedCellsData = {\n meta: {\n facetKeys: string[];\n xGroupKeys: string[];\n yGroupKeys: string[];\n xKeysByGroups: Record<string, string[]>;\n yKeysByGroups: Record<string, string[]>;\n // for titles, if facet by more 1 columns title has several values separated by commas\n facetKeyValues: Record<string, string[]>;\n xGroupKeyValues: Record<string, string[]>;\n yGroupKeyValues: Record<string, string[]>;\n xLabels: Record<string, string>;\n yLabels: Record<string, string>;\n xGroupLabels: Record<string, string>;\n yGroupLabels: Record<string, string>;\n valueExtent: [number, number]; // for color scales\n // data for labels, annotations and dendrograms\n xDataByKeys: Record<string, Record<string, DataValue>>;\n yDataByKeys: Record<string, Record<string, DataValue>>;\n };\n //facet groups\n facets: Record<\n string,\n {\n // axis keys\n xKeys: string[];\n yKeys: string[];\n // axis keys grouped by group keys from meta\n xKeysByGroups: Record<string, string[]>;\n yKeysByGroups: Record<string, string[]>;\n // cells grouped by X, then by Y\n cells: Record<string, Record<string, Cell>>;\n }\n >;\n};\n\n// all combinations with 1 key from each list\nfunction getKeysCombinations(keysLists: string[][]) {\n if (!keysLists.length) {\n return [];\n }\n let result: string[][] = [[]];\n keysLists.forEach(keys => {\n const nextResult: string[][] = [];\n keys.forEach(key => {\n nextResult.push(...result.map(resultItem => [...resultItem, key]));\n });\n result = nextResult;\n });\n return result;\n}\nconst sortByLabels = (arr: string[], direction: 'asc' | 'desc', labels: Record<string, string> = {}) => {\n return arr.sort((a, b) => direction === 'asc'\n ? (labels[a] ?? a).localeCompare((labels[b] ?? b), 'en', { numeric: true })\n : (labels[b] ?? b).localeCompare((labels[a] ?? a), 'en', { numeric: true })\n );\n};\n\nexport function getCells(\n data: DataFrame,\n xColumn: ColumnName,\n yColumn: ColumnName,\n valueColumn: ColumnName,\n facetBy: ColumnName[],\n xGroupBy: ColumnName[],\n yGroupBy: ColumnName[],\n annotations: HeatmapSettingsImpl['annotations'],\n dendrogramX: HeatmapSettingsImpl['dendrogramX'],\n dendrogramY: HeatmapSettingsImpl['dendrogramY'],\n normalization: HeatmapSettingsImpl['normalization'],\n NAValueAs: HeatmapSettingsImpl['NAValueAs'],\n keysOrder: HeatmapSettingsImpl['keysOrder'],\n xAxis: HeatmapSettingsImpl['chartSettings']['xAxis'],\n yAxis: HeatmapSettingsImpl['chartSettings']['yAxis'],\n): GroupedCellsData {\n const dataSize = data.columnNames.length ? data.getColumn(data.columnNames[0]).length : 0;\n if (dataSize > MAX_RENDERED_CELLS_COUNT) {\n console.error(`Too many cells for graph rendering (${dataSize})`);\n }\n const facetKeysLists = facetBy.length\n ? facetBy.map(column => keysOrder[column.value] ?? data.getColumnCategories(column.value))\n : [['null']];\n const xGroupKeysLists = xGroupBy.length\n ? xGroupBy.map(column => keysOrder[column.value] ?? data.getColumnCategories(column.value))\n : [['null']];\n const yGroupKeysLists = yGroupBy.length\n ? yGroupBy.map(column => keysOrder[column.value] ?? data.getColumnCategories(column.value))\n : [['null']];\n const facetKeysCombinations = getKeysCombinations(facetKeysLists);\n const xGroupKeysCombinations = getKeysCombinations(xGroupKeysLists);\n const yGroupKeysCombinations = getKeysCombinations(yGroupKeysLists);\n\n const facetKeys = facetKeysCombinations.map(keys => keys.join('_'));\n const xGroupKeys = xGroupKeysCombinations.map(keys => keys.join('_'));\n const yGroupKeys = yGroupKeysCombinations.map(keys => keys.join('_'));\n\n const result: GroupedCellsData = {\n meta: {\n facetKeys,\n xGroupKeys,\n yGroupKeys,\n xKeysByGroups: {},\n yKeysByGroups: {},\n xLabels: {},\n yLabels: {},\n xGroupLabels: {},\n yGroupLabels: {},\n xDataByKeys: {},\n yDataByKeys: {},\n facetKeyValues: facetKeys.reduce((res: Record<string, string[]>, key, index) => {\n res[key] = facetKeysCombinations[index];\n return res;\n }, {}),\n xGroupKeyValues: xGroupKeys.reduce((res: Record<string, string[]>, key, index) => {\n res[key] = xGroupKeysCombinations[index];\n return res;\n }, {}),\n yGroupKeyValues: yGroupKeys.reduce((res: Record<string, string[]>, key, index) => {\n res[key] = yGroupKeysCombinations[index];\n return res;\n }, {}),\n valueExtent: [Infinity, -Infinity],\n },\n facets: {},\n };\n\n const xLabelsSource = xColumn.valueLabels ?? xColumn.value;\n const yLabelsSource = yColumn.valueLabels ?? yColumn.value;\n const annotationColumnsX = annotations.filter(item => item.axis === 'x').map(item => item.valueColumn.value);\n const annotationColumnsY = annotations.filter(item => item.axis === 'y').map(item => item.valueColumn.value);\n const dendrogramXColumns = Object.values(dendrogramX ?? {}).map(column => column.value);\n const dendrogramYColumns = Object.values(dendrogramY ?? {}).map(column => column.value);\n const additionalDataColumnsX = lodash.uniq([...annotationColumnsX, ...dendrogramXColumns, xLabelsSource]);\n const additionalDataColumnsY = lodash.uniq([...annotationColumnsY, ...dendrogramYColumns, yLabelsSource]);\n\n for (let i = 0; i < data.rowsCount; i++) {\n const facetKey = facetBy.length ? facetBy.map(column => data.getColumnValue(column.value, i)).join('_') : 'null';\n const xGroupKey = xGroupBy.length ? xGroupBy.map(column => data.getColumnValue(column.value, i)).join('_') : 'null';\n const yGroupKey = yGroupBy.length ? yGroupBy.map(column => data.getColumnValue(column.value, i)).join('_') : 'null';\n const xGroupLabel = xGroupBy.length ? xGroupBy.map(column => data.getColumnValue(column.valueLabels ?? column.value, i)).join(', ') : '';\n const yGroupLabel = yGroupBy.length ? yGroupBy.map(column => data.getColumnValue(column.valueLabels ?? column.value, i)).join(', ') : '';\n result.meta.xGroupLabels[xGroupKey] = xGroupLabel;\n result.meta.yGroupLabels[yGroupKey] = yGroupLabel;\n const x = String(data.getColumnValue(xColumn.value, i));\n const y = String(data.getColumnValue(yColumn.value, i));\n const value = (data.getColumnValue(valueColumn.value, i) ?? NAValueAs) as number | null;\n \n if (x === 'null' || y === 'null' || value === null) {\n continue;\n }\n\n if (!result.facets[facetKey]) {\n result.facets[facetKey] = {\n xKeys: [],\n yKeys: [],\n xKeysByGroups: {},\n yKeysByGroups: {},\n cells: {},\n };\n }\n if (!result.facets[facetKey].xKeysByGroups[xGroupKey]) {\n result.facets[facetKey].xKeysByGroups[xGroupKey] = [];\n }\n if (!result.facets[facetKey].yKeysByGroups[yGroupKey]) {\n result.facets[facetKey].yKeysByGroups[yGroupKey] = [];\n }\n result.facets[facetKey].xKeys.push(x);\n result.facets[facetKey].yKeys.push(y);\n result.facets[facetKey].xKeysByGroups[xGroupKey].push(x);\n result.facets[facetKey].yKeysByGroups[yGroupKey].push(y);\n\n if (!result.facets[facetKey].cells[x]) {\n result.facets[facetKey].cells[x] = {};\n }\n result.meta.valueExtent[0] = Math.min(value, result.meta.valueExtent[0]);\n result.meta.valueExtent[1] = Math.max(value, result.meta.valueExtent[1]);\n if (result.facets[facetKey].cells[x][y] && result.facets[facetKey].cells[x][y].value !== value) {\n throw Error(`More than 1 value for x=${x}, y=${y}`);\n }\n const xLabelsSourceValue = data.getColumnValue(xLabelsSource, i);\n if (result.meta.xLabels[x] && String(xLabelsSourceValue) !== result.meta.xLabels[x]) {\n throw Error(`More than 1 x-label value for x=${x}`);\n }\n const yLabelsSourceValue = data.getColumnValue(yLabelsSource, i);\n if (result.meta.yLabels[y] && String(yLabelsSourceValue) !== result.meta.yLabels[y]) {\n throw Error(`More than 1 y-label value for y=${y}`);\n }\n result.meta.xLabels[x] = String(xLabelsSourceValue);\n result.meta.yLabels[y] = String(yLabelsSourceValue);\n // data for labels, annotations and dendrograms by X\n additionalDataColumnsX.forEach(columnKey => {\n const isAddedColumn = typeof result.meta.xDataByKeys[columnKey] !== 'undefined';\n const isAddedValue = isAddedColumn && typeof result.meta.xDataByKeys[columnKey][x] !== 'undefined';\n if (!isAddedColumn) {\n result.meta.xDataByKeys[columnKey] = {};\n }\n if (isAddedValue && result.meta.xDataByKeys[columnKey][x] !== data.getColumnValue(columnKey, i)) {\n throw Error(`More than 1 value for x = ${x} and column = ${columnKey}`);\n }\n if (!isAddedValue) {\n result.meta.xDataByKeys[columnKey][x] = data.getColumnValue(columnKey, i);\n }\n });\n // data for labels, annotations and dendrograms by Y\n additionalDataColumnsY.forEach(columnKey => {\n const isAddedColumn = typeof result.meta.yDataByKeys[columnKey] !== 'undefined';\n const isAddedValue = isAddedColumn && typeof result.meta.yDataByKeys[columnKey][y] !== 'undefined';\n if (!isAddedColumn) {\n result.meta.yDataByKeys[columnKey] = {};\n }\n if (isAddedValue && result.meta.yDataByKeys[columnKey][y] !== data.getColumnValue(columnKey, i)) {\n throw Error(`More than 1 value for y = ${y} and column = ${columnKey}`);\n }\n if (!isAddedValue) {\n result.meta.yDataByKeys[columnKey][y] = data.getColumnValue(columnKey, i);\n }\n });\n result.facets[facetKey].cells[x][y] = {\n isCell: true,\n idx: i,\n id: `${x}_${y}`,\n x,\n y,\n value,\n normalizedValue: value,\n };\n }\n\n result.meta.facetKeys = result.meta.facetKeys.filter((key) => result.facets[key]); // filter only used;\n\n // make uniq x, y, x-group and y-group keys\n result.meta.facetKeys.forEach(facetKey => {\n const facet = result.facets[facetKey];\n const uniqueXKeys = lodash.uniq(facet.xKeys);\n const uniqueYKeys = lodash.uniq(facet.yKeys);\n facet.xKeys = keysOrder[xColumn.value] ? lodash.intersection(keysOrder[xColumn.value], uniqueXKeys) : uniqueXKeys;\n facet.yKeys = keysOrder[yColumn.value] ? lodash.intersection(keysOrder[yColumn.value], uniqueYKeys) : uniqueYKeys;\n xGroupKeys.forEach(xGroupKey => {\n result.facets[facetKey].xKeysByGroups[xGroupKey] = lodash.intersection(\n facet.xKeys,\n result.facets[facetKey].xKeysByGroups[xGroupKey]\n );\n });\n yGroupKeys.forEach(yGroupKey => {\n result.facets[facetKey].yKeysByGroups[yGroupKey] = lodash.intersection(\n facet.yKeys,\n result.facets[facetKey].yKeysByGroups[yGroupKey]\n );\n });\n });\n\n if (normalization) {\n const valueExtent = [Infinity, -Infinity] as [number, number];\n result.meta.facetKeys.forEach(facetKey => {\n const {xKeys, yKeys, cells} = result.facets[facetKey];\n const cellKeys = normalization.direction === 'row' ? xKeys : yKeys;\n const groupKeys = normalization.direction === 'row' ? yKeys : xKeys;\n const cellGetter = normalization.direction === 'row'\n ? (cellKey:string, groupKey:string) => cells[cellKey]?.[groupKey]\n : (cellKey:string, groupKey:string) => cells[groupKey]?.[cellKey];\n groupKeys.forEach((groupKey) => {\n const values:number[] = [];\n cellKeys.forEach((cellKey) => {\n const v = cellGetter(cellKey, groupKey)?.value;\n if (v !== undefined) {\n values.push(v as number);\n }\n });\n const normalize = getNormalizationFn(normalization.method, values);\n cellKeys.forEach((cellKey) => {\n const cell = cellGetter(cellKey, groupKey);\n if (cell !== undefined) {\n cell.normalizedValue = normalize(cell.value as number);\n valueExtent[0] = Math.min(cell.normalizedValue, valueExtent[0]);\n valueExtent[1] = Math.max(cell.normalizedValue, valueExtent[1]);\n }\n });\n });\n });\n result.meta.valueExtent = valueExtent;\n }\n\n // every facet may contain not all of available keys, but for shared axes it is necessary to have all of them\n result.meta.xKeysByGroups = xGroupKeys.reduce((res: Record<string, string[]>, xGroupKey) => {\n const 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@@ -1,15 +1,15 @@
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1
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import { renderToString as
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2
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-
import { AbstractChart as
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import { isColumnName as
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-
import
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1
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+
import { renderToString as V } from "../node_modules/react-dom/server.browser.js";
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2
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+
import { AbstractChart as N } from "../AbstractChart.js";
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3
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+
import { isColumnName as B } from "../utils/index.js";
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4
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import q from "./ChartRenderer.js";
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5
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import { getCells as I } from "./getCells.js";
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6
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import { getDendrograms as P } from "./getDendrograms.js";
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-
import { HeatmapSettingsImpl as
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8
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var $ = Object.defineProperty, F = (
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class tt extends
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7
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+
import { HeatmapSettingsImpl as w } from "./HeatmapSettingsImpl.js";
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var $ = Object.defineProperty, F = (h, t, e) => t in h ? $(h, t, { enumerable: !0, configurable: !0, writable: !0, value: e }) : h[t] = e, A = (h, t, e) => F(h, typeof t != "symbol" ? t + "" : t, e);
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class tt extends N {
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10
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constructor(t, e, a) {
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super(t, e),
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}),
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super(t, e), A(this, "settings"), A(this, "chartRenderer", new q()), A(this, "onTooltipHintSwitch", () => {
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}), A(this, "calculatedData", null), this.settings = new w(e), a && (this.onTooltipHintSwitch = a[0]);
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}
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mount(t) {
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try {
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@@ -24,7 +24,7 @@ class tt extends q {
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updateSettingsAndData(t, e) {
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try {
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const a = this.settings, r = this.data;
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this.settings = new
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this.settings = new w(e), this.data = t, this._needUpdateCalculatedDataBySettings(a, this.settings) || this._needUpdateCalculatedDataByData(r, this.data) ? this._updateData() : this._updateAesInData(), this._updateChart();
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} catch (a) {
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a instanceof Error && (this.chartRenderer.renderError(a.message), console.error(a));
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}
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@@ -33,42 +33,42 @@ class tt extends q {
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console.warn("no chart state for heatmap");
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}
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export() {
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return this._updateChart(),
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return this._updateChart(), V(this.chartRenderer.component);
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}
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38
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_needUpdateCalculatedDataBySettings(t, e) {
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39
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var a, r, n, i,
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39
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var a, r, n, o, i, c, m, s, d, g, l, v;
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40
40
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const {
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41
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-
xColumn:
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42
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-
yColumn:
|
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43
|
-
valueColumn:
|
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44
|
-
xGroupBy:
|
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41
|
+
xColumn: p,
|
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42
|
+
yColumn: f,
|
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43
|
+
valueColumn: D,
|
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44
|
+
xGroupBy: _,
|
|
45
45
|
yGroupBy: x,
|
|
46
|
-
facetBy:
|
|
47
|
-
annotations:
|
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48
|
-
chartSettings:
|
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49
|
-
facetSettings:
|
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50
|
-
dendrogramX:
|
|
51
|
-
dendrogramY:
|
|
52
|
-
normalization:
|
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53
|
-
NAValueAs:
|
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54
|
-
} = e,
|
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55
|
-
|
|
56
|
-
),
|
|
57
|
-
|
|
58
|
-
),
|
|
59
|
-
function
|
|
60
|
-
return
|
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46
|
+
facetBy: u,
|
|
47
|
+
annotations: O,
|
|
48
|
+
chartSettings: k,
|
|
49
|
+
facetSettings: b,
|
|
50
|
+
dendrogramX: Y,
|
|
51
|
+
dendrogramY: X,
|
|
52
|
+
normalization: S,
|
|
53
|
+
NAValueAs: R
|
|
54
|
+
} = e, j = Object.values(((a = t.dendrogramX) == null ? void 0 : a.aes) || {}).filter(
|
|
55
|
+
B
|
|
56
|
+
), T = Object.values((Y == null ? void 0 : Y.aes) || {}).filter(B), E = Object.values(((r = t.dendrogramY) == null ? void 0 : r.aes) || {}).filter(
|
|
57
|
+
B
|
|
58
|
+
), U = Object.values((X == null ? void 0 : X.aes) || {}).filter(B);
|
|
59
|
+
function y(C, G) {
|
|
60
|
+
return C.length !== G.length || C.some((z, H) => z.value !== G[H].value);
|
|
61
61
|
}
|
|
62
|
-
return t.xColumn.value !==
|
|
63
|
-
t.annotations.map((
|
|
64
|
-
|
|
65
|
-
) ||
|
|
62
|
+
return t.xColumn.value !== p.value || t.yColumn.value !== f.value || t.valueColumn.value !== D.value || y(t.xGroupBy, _) || y(t.yGroupBy, x) || y(t.facetBy, u) || y(
|
|
63
|
+
t.annotations.map((C) => C.valueColumn),
|
|
64
|
+
O.map((C) => C.valueColumn)
|
|
65
|
+
) || y(j, T) || y(E, U) || (e.dendrogramX || t.dendrogramX) && (((n = t.dendrogramX) == null ? void 0 : n.distance) !== ((o = e.dendrogramX) == null ? void 0 : o.distance) || ((i = t.dendrogramX) == null ? void 0 : i.linkage) !== ((c = e.dendrogramX) == null ? void 0 : c.linkage)) || (e.dendrogramY || t.dendrogramY) && (((m = t.dendrogramY) == null ? void 0 : m.distance) !== ((s = e.dendrogramY) == null ? void 0 : s.distance) || ((d = t.dendrogramY) == null ? void 0 : d.linkage) !== ((g = e.dendrogramY) == null ? void 0 : g.linkage)) || t.chartSettings.valueType !== k.valueType || t.facetSettings.sharedX !== b.sharedX || t.facetSettings.sharedY !== b.sharedY || ((l = t.normalization) == null ? void 0 : l.method) !== (S == null ? void 0 : S.method) || ((v = t.normalization) == null ? void 0 : v.direction) !== (S == null ? void 0 : S.direction) || t.NAValueAs !== R;
|
|
66
66
|
}
|
|
67
67
|
_needUpdateCalculatedDataByData(t, e) {
|
|
68
68
|
const a = Object.keys(t.data), r = Object.keys(e.data);
|
|
69
69
|
return t.id !== e.id || a.length !== r.length || a.some((n) => {
|
|
70
|
-
var
|
|
71
|
-
return t.data[n].length !== ((
|
|
70
|
+
var o;
|
|
71
|
+
return t.data[n].length !== ((o = e.data[n]) == null ? void 0 : o.length);
|
|
72
72
|
});
|
|
73
73
|
}
|
|
74
74
|
_updateData() {
|
|
@@ -78,67 +78,89 @@ class tt extends q {
|
|
|
78
78
|
valueColumn: a,
|
|
79
79
|
xGroupBy: r,
|
|
80
80
|
yGroupBy: n,
|
|
81
|
-
facetBy:
|
|
82
|
-
chartSettings:
|
|
83
|
-
facetSettings:
|
|
84
|
-
annotations:
|
|
85
|
-
dendrogramX:
|
|
86
|
-
dendrogramY:
|
|
87
|
-
normalization:
|
|
88
|
-
NAValueAs:
|
|
89
|
-
|
|
81
|
+
facetBy: o,
|
|
82
|
+
chartSettings: i,
|
|
83
|
+
facetSettings: c,
|
|
84
|
+
annotations: m,
|
|
85
|
+
dendrogramX: s,
|
|
86
|
+
dendrogramY: d,
|
|
87
|
+
normalization: g,
|
|
88
|
+
NAValueAs: l,
|
|
89
|
+
keysOrder: v
|
|
90
|
+
} = this.settings, p = I(
|
|
90
91
|
this.data,
|
|
91
92
|
t,
|
|
92
93
|
e,
|
|
93
94
|
a,
|
|
94
|
-
|
|
95
|
+
o,
|
|
95
96
|
r,
|
|
96
97
|
n,
|
|
97
|
-
|
|
98
|
-
|
|
99
|
-
|
|
100
|
-
|
|
101
|
-
|
|
102
|
-
|
|
98
|
+
m,
|
|
99
|
+
s,
|
|
100
|
+
d,
|
|
101
|
+
g,
|
|
102
|
+
l,
|
|
103
|
+
v,
|
|
104
|
+
i.xAxis,
|
|
105
|
+
i.yAxis
|
|
106
|
+
), f = P(p, s, d, c), D = i.valueType === "discrete" ? this.data.getColumnCategories(a.value) : [];
|
|
103
107
|
this.calculatedData = {
|
|
104
|
-
groupedCellsData:
|
|
105
|
-
dendrogramsData:
|
|
106
|
-
cellUniqValues:
|
|
108
|
+
groupedCellsData: p,
|
|
109
|
+
dendrogramsData: f,
|
|
110
|
+
cellUniqValues: D
|
|
107
111
|
};
|
|
108
112
|
}
|
|
109
113
|
_updateAesInData() {
|
|
110
114
|
}
|
|
111
115
|
_updateChart() {
|
|
116
|
+
var t, e;
|
|
112
117
|
if (!this.calculatedData)
|
|
113
118
|
return;
|
|
114
119
|
const {
|
|
115
|
-
id:
|
|
116
|
-
valueColumn:
|
|
117
|
-
chartSettings:
|
|
118
|
-
facetSettings:
|
|
119
|
-
aes:
|
|
120
|
-
annotations:
|
|
121
|
-
dendrogramX:
|
|
122
|
-
dendrogramY:
|
|
123
|
-
inheritedDendrogramAes:
|
|
124
|
-
normalization:
|
|
125
|
-
|
|
120
|
+
id: a,
|
|
121
|
+
valueColumn: r,
|
|
122
|
+
chartSettings: n,
|
|
123
|
+
facetSettings: o,
|
|
124
|
+
aes: i,
|
|
125
|
+
annotations: c,
|
|
126
|
+
dendrogramX: m,
|
|
127
|
+
dendrogramY: s,
|
|
128
|
+
inheritedDendrogramAes: d,
|
|
129
|
+
normalization: g,
|
|
130
|
+
keysOrder: l,
|
|
131
|
+
xColumn: v,
|
|
132
|
+
yColumn: p,
|
|
133
|
+
xGroupBy: f,
|
|
134
|
+
yGroupBy: D
|
|
135
|
+
} = this.settings, _ = {
|
|
136
|
+
x: ((t = l[v.value]) == null ? void 0 : t.length) > 0,
|
|
137
|
+
y: ((e = l[p.value]) == null ? void 0 : e.length) > 0,
|
|
138
|
+
xGroup: f.some((x) => {
|
|
139
|
+
var u;
|
|
140
|
+
return ((u = l[x.value]) == null ? void 0 : u.length) > 0;
|
|
141
|
+
}),
|
|
142
|
+
yGroup: D.some((x) => {
|
|
143
|
+
var u;
|
|
144
|
+
return ((u = l[x.value]) == null ? void 0 : u.length) > 0;
|
|
145
|
+
})
|
|
146
|
+
};
|
|
126
147
|
this.chartRenderer.render(
|
|
127
148
|
this.data,
|
|
128
|
-
t,
|
|
129
149
|
a,
|
|
130
|
-
r,
|
|
131
150
|
n,
|
|
132
|
-
|
|
151
|
+
o,
|
|
133
152
|
i,
|
|
134
|
-
|
|
135
|
-
|
|
136
|
-
|
|
153
|
+
this.calculatedData.groupedCellsData,
|
|
154
|
+
c,
|
|
155
|
+
r,
|
|
156
|
+
m,
|
|
157
|
+
s,
|
|
137
158
|
this.calculatedData.dendrogramsData,
|
|
138
|
-
|
|
159
|
+
d,
|
|
139
160
|
this.calculatedData.cellUniqValues,
|
|
140
|
-
|
|
141
|
-
this.onTooltipHintSwitch
|
|
161
|
+
g,
|
|
162
|
+
this.onTooltipHintSwitch,
|
|
163
|
+
_
|
|
142
164
|
);
|
|
143
165
|
}
|
|
144
166
|
}
|