npm - @milaboratories/graph-maker - Versions diffs - 1.1.150 → 1.1.151 - Mend

@milaboratories/graph-maker 1.1.150 → 1.1.151

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

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package/dist/GraphMaker/constantsCommon.d.ts.map CHANGED Viewed

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1	+ 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package/dist/GraphMaker/constantsCommon.js CHANGED Viewed

@@ -21,8 +21,8 @@ import z from "./icons/StackedBarIcon.vue.js";
 import ae from "./icons/ViolinAndBinnedIcon.vue.js";
 import le from "./icons/ViolinAndJitterIcon.vue.js";
 import ie from "./icons/ViolinIcon.vue.js";
-const we = "pl7.app/graph/thresholds", Re = "pl7.app/graph/axis/lowerLimit", ke = "pl7.app/graph/axis/upperLimit", je = "pl7.app/graph/axis/symmetricRange", Fe = "pl7.app/graph/palette", Ge = "pl7.app/axisNature", Ye = "pl7.app/isSubset";
-function Ne(o, t) {
+const we = "pl7.app/graph/thresholds", ke = "pl7.app/graph/axis/lowerLimit", Re = "pl7.app/graph/axis/upperLimit", je = "pl7.app/graph/axis/symmetricRange", Fe = "pl7.app/graph/palette", Ge = "pl7.app/isSubset";
+function Ye(o, t) {
   return t === "discrete" ? o && se[o] ? o : "box" : t === "scatterplot" || t === "scatterplot-umap" ? o && de[o] ? o : "dots" : t === "dendro" ? "dendro" : o ?? "heatmap";
 }
 const se = {
@@ -50,15 +50,15 @@ const se = {
   dots: ["dots"],
   curve: ["curve"],
   curve_dots: ["curve", "dots"]
-}, Ue = {
+}, Ne = {
   dots: ["dots"],
   curve_dots: ["curve", "dots"]
-}, Ve = {
+}, Ue = {
   heatmap: ["heatmap"],
   heatmapClustered: ["heatmapClustered"]
-}, ze = {
+}, Ve = {
   bins: ["bins"]
-}, Ke = {
+}, ze = {
   box: "Boxplot",
   binnedDots: "Binned Dots",
   jitteredDots: "Jittered Dots",
@@ -78,8 +78,8 @@ const se = {
   bins: "Histogram",
   bubble: "Bubble plot"
 };
-function Xe(o, t) {
-  var l, a, n, c, p, m, f, b, _, h, A, E, T, L, g, D, S, I, M, x, v, C, y, B, H, O, P, w, R, k, j;
+function Ke(o, t) {
+  var l, a, n, c, p, m, f, b, _, h, A, E, T, L, g, D, S, I, M, v, x, C, y, B, H, O, P, w, k, R, j;
   if (o === "discrete") {
     const e = t;
     return {
@@ -102,8 +102,8 @@ function Xe(o, t) {
       },
       pairwise: {
         data: {
-          testMethod: ((x = (M = e == null ? void 0 : e.pairwise) == null ? void 0 : M.data) == null ? void 0 : x.testMethod) ?? null,
-          correctionMethod: ((C = (v = e == null ? void 0 : e.pairwise) == null ? void 0 : v.data) == null ? void 0 : C.correctionMethod) ?? "Bonferroni",
+          testMethod: ((v = (M = e == null ? void 0 : e.pairwise) == null ? void 0 : M.data) == null ? void 0 : v.testMethod) ?? null,
+          correctionMethod: ((C = (x = e == null ? void 0 : e.pairwise) == null ? void 0 : x.data) == null ? void 0 : C.correctionMethod) ?? "Bonferroni",
           format: ((B = (y = e == null ? void 0 : e.pairwise) == null ? void 0 : y.data) == null ? void 0 : B.format) ?? "significance",
           ns: ((O = (H = e == null ? void 0 : e.pairwise) == null ? void 0 : H.data) == null ? void 0 : O.ns) ?? !1
         },
@@ -114,19 +114,19 @@ function Xe(o, t) {
   const r = t;
   return {
     trend: {
-      on: ((R = r == null ? void 0 : r.trend) == null ? void 0 : R.on) ?? !1,
-      trim: ((k = r == null ? void 0 : r.trend) == null ? void 0 : k.trim) ?? !1,
+      on: ((k = r == null ? void 0 : r.trend) == null ? void 0 : k.on) ?? !1,
+      trim: ((R = r == null ? void 0 : r.trend) == null ? void 0 : R.trim) ?? !1,
       showLegend: ((j = r == null ? void 0 : r.trend) == null ? void 0 : j.showLegend) ?? !0
     }
   };
 }
-function We(o) {
+function Xe(o) {
   return typeof o < "u" && o !== null && typeof o == "object" && "min" in o && "max" in o;
 }
-function Je(o) {
+function We(o) {
   return typeof o == "object" && o !== null && "type" in o;
 }
-function qe(o) {
+function Je(o) {
   return typeof o < "u" && o !== null && typeof o == "object" && "range" in o;
 }
 const ue = () => ({
@@ -263,7 +263,7 @@ const ue = () => ({
     opacity: 1
   }
 });
-function Qe(o) {
+function qe(o) {
   const t = ue();
   return Object.keys(t).reduce((l, a) => (Object.assign(
     l[a],
@@ -321,7 +321,7 @@ const ce = () => ({
 function K(o) {
   return o === "full" || o === "none";
 }
-function Ze(o, t) {
+function Qe(o, t) {
   var a;
   const r = ce();
   if (!t)
@@ -353,7 +353,7 @@ function Ze(o, t) {
     }
   };
 }
-const $e = {
+const Ze = {
   box: Z,
   box_binnedDots: q,
   box_jitteredDots: Q,
@@ -382,12 +382,12 @@ const $e = {
   dendro: Y,
   bins: G,
   bubble: N
-}, eo = [
+}, $e = [
   { value: "ttest", text: "TTest" },
   { value: "anova", text: "ANOVA" },
   { value: "wilcoxon", text: "Wilcoxon" },
   { value: "kruskalWallis", text: "Kruskal-Wallis" }
-], oo = [
+], eo = [
   { value: "BenjaminiHochberg", text: "Benjamini-Hochberg" },
   { value: "BenjaminiYekutieli", text: "Benjamini-Yekutieli" },
   { value: "Bonferroni", text: "Bonferroni" },
@@ -395,40 +395,39 @@ const $e = {
   { value: "Holm", text: "Holm" },
   { value: "Hommel", text: "Hommel" },
   { value: "none", text: "None" }
-], to = [
+], oo = [
   { value: "pValue", text: "p-value" },
   { value: "significance", text: "significance" }
-], ro = 600, no = 350, ao = 400, lo = 250, io = 100;
+], to = 600, ro = 350, no = 400, ao = 250, lo = 100;
 export {
-  Ge as AXIS_NATURE_KEY,
-  no as DEFAULT_HEIGHT,
-  lo as DEFAULT_HEIGHT_SMALL,
+  ro as DEFAULT_HEIGHT,
+  ao as DEFAULT_HEIGHT_SMALL,
   ue as DEFAULT_LAYERS_SETTINGS,
-  ro as DEFAULT_WIDTH,
-  ao as DEFAULT_WIDTH_SMALL,
+  to as DEFAULT_WIDTH,
+  no as DEFAULT_WIDTH_SMALL,
   se as DISCRETE_TEMPLATES_MAP,
-  to as FORMAT_P_VALUE_OPTIONS,
-  Ve as HEATMAP_TEMPLATES_MAP,
-  ze as HISTOGRAM_TEMPLATES_MAP,
-  $e as LAYER_ICONS,
-  Ke as LAYER_TITLES,
-  Re as LOWER_LIMIT_KEY,
-  io as MAX_SEARCH_OPTIONS_LIST_LENGTH,
+  oo as FORMAT_P_VALUE_OPTIONS,
+  Ue as HEATMAP_TEMPLATES_MAP,
+  Ve as HISTOGRAM_TEMPLATES_MAP,
+  Ze as LAYER_ICONS,
+  ze as LAYER_TITLES,
+  ke as LOWER_LIMIT_KEY,
+  lo as MAX_SEARCH_OPTIONS_LIST_LENGTH,
   Fe as PALETTE_KEY,
   de as SCATTERPLOT_TEMPLATES_MAP,
-  Ue as SCATTERPLOT_UMAP_TEMPLATES_MAP,
-  oo as STAT_CORRECTION_METHOD,
-  eo as STAT_TEST_METHOD,
-  Ye as SUBSET_FILTER_KEY,
+  Ne as SCATTERPLOT_UMAP_TEMPLATES_MAP,
+  eo as STAT_CORRECTION_METHOD,
+  $e as STAT_TEST_METHOD,
+  Ge as SUBSET_FILTER_KEY,
   je as SYMMETRIC_RANGE_KEY,
   we as THRESHOLDS_KEY,
-  ke as UPPER_LIMIT_KEY,
-  Ze as getInitialAxesSettings,
-  Qe as getInitialLayersSettings,
-  Xe as getInitialStatisticsState,
-  Ne as getInitialTemplate,
-  qe as isContinuousDataMapping,
-  Je as isMappedAes,
-  We as isNumberRange
+  Re as UPPER_LIMIT_KEY,
+  Qe as getInitialAxesSettings,
+  qe as getInitialLayersSettings,
+  Ke as getInitialStatisticsState,
+  Ye as getInitialTemplate,
+  Je as isContinuousDataMapping,
+  We as isMappedAes,
+  Xe as isNumberRange
 };
 //# sourceMappingURL=constantsCommon.js.map

package/dist/GraphMaker/constantsCommon.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"constantsCommon.js","sources":["../../src/GraphMaker/constantsCommon.ts"],"sourcesContent":["import type { ChartType } from '@milaboratories/pf-plots';\nimport type { Component } from 'vue';\nimport {\n DotShape,\n LineType\n} from './components/AesSettings/types';\nimport {\n DEFAULT_BLACK,\n DEFAULT_DOT_SHAPE,\n DEFAULT_LINE_TYPE\n} from './constantsAesthetic';\nimport { DEFAULT_DOT_SIZE, DEFAULT_LINE_COLOR } from './dataBindAes';\nimport BarAndErrorIcon from './icons/BarAndErrorIcon.vue';\nimport BarAndLineIcon from './icons/BarAndLineIcon.vue';\nimport BarIcon from './icons/BarIcon.vue';\nimport BinnedDotsIcon from './icons/BinnedDotsIcon.vue';\nimport BoxplotAndBinnedIcon from './icons/BoxplotAndBinnedIcon.vue';\nimport BoxplotAndJitterIcon from './icons/BoxplotAndJitterIcon.vue';\nimport BoxplotIcon from './icons/BoxplotIcon.vue';\nimport DendroIcon from './icons/DendroIcon.vue';\nimport HeatmapIcon from './icons/HeatmapIcon.vue';\nimport JitteredDotsIcon from './icons/JitteredDotsIcon.vue';\nimport LineAndBinnedIcon from './icons/LineAndBinnedIcon.vue';\nimport LineAndErrorbarIcon from './icons/LineAndErrorbarIcon.vue';\nimport LineAndJitterIcon from './icons/LineAndJitterIcon.vue';\nimport LineIcon from './icons/LineIcon.vue';\nimport LogoIcon from './icons/LogoIcon.vue';\nimport ScatterplotIcon from './icons/ScatterplotIcon.vue';\nimport SinaIcon from './icons/SinaIcon.vue';\nimport StackedBarIcon from './icons/StackedBarIcon.vue';\nimport ViolinAndBinnedIcon from './icons/ViolinAndBinnedIcon.vue';\nimport ViolinAndJitterIcon from './icons/ViolinAndJitterIcon.vue';\nimport ViolinIcon from './icons/ViolinIcon.vue';\nimport {\n AxisTitleMode,\n DeepPartial,\n DiscreteLayer,\n DiscreteLayersTemplate,\n Frame,\n HeatmapFrame, HeatmapLayer, HeatmapLayerTemplate, HistogramLayer, HistogramLayerTemplate,\n LabelsPosition,\n LabelsRotation,\n Layer,\n LayersTemplate,\n Scale,\n ScatterplotLayer,\n ScatterplotLayersTemplate,\n TitlePosition\n} from './types';\n\nexport const DEFAULT_CHART_TYPE: ChartType = 'discrete';\n\n/** Annotations keys */\nexport const THRESHOLDS_KEY = 'pl7.app/graph/thresholds';\nexport const LOWER_LIMIT_KEY = 'pl7.app/graph/axis/lowerLimit';\nexport const UPPER_LIMIT_KEY = 'pl7.app/graph/axis/upperLimit';\nexport const SYMMETRIC_RANGE_KEY = 'pl7.app/graph/axis/symmetricRange';\nexport const PALETTE_KEY = 'pl7.app/graph/palette';\nexport const AXIS_NATURE_KEY = 'pl7.app/axisNature';\nexport const COLUMN_MIN_KEY = 'pl7.app/min';\nexport const COLUMN_MAX_KEY = 'pl7.app/max';\nexport const SUBSET_FILTER_KEY = 'pl7.app/isSubset';\n\nexport function getInitialTemplate(\n restoredTemplate: LayersTemplate \| null,\n chartType: ChartType\n) {\n if (chartType === 'discrete') {\n return restoredTemplate &&\n DISCRETE_TEMPLATES_MAP[restoredTemplate as DiscreteLayersTemplate]\n ? restoredTemplate\n : 'box';\n }\n if (chartType === 'scatterplot' \|\| chartType === 'scatterplot-umap') {\n return restoredTemplate &&\n SCATTERPLOT_TEMPLATES_MAP[restoredTemplate as ScatterplotLayersTemplate]\n ? restoredTemplate\n : 'dots';\n }\n if (chartType === 'dendro') {\n return 'dendro';\n }\n return restoredTemplate ?? 'heatmap';\n}\n\nexport const DISCRETE_TEMPLATES_MAP: Record<\n DiscreteLayersTemplate,\n DiscreteLayer[]\n> = {\n box: ['box'],\n box_binnedDots: ['box', 'binnedDots'],\n box_jitteredDots: ['box', 'jitteredDots'],\n violin: ['violin'],\n violin_binnedDots: ['violin', 'binnedDots'],\n violin_jitteredDots: ['violin', 'jitteredDots'],\n binnedDots: ['binnedDots'],\n jitteredDots: ['jitteredDots'],\n bar: ['bar'],\n bar_line: ['bar', 'line'],\n bar_errorbar: ['bar', 'errorbar'],\n stackedBar: ['stackedBar'],\n stackedArea: ['stackedArea'],\n line: ['line'],\n line_jitteredDots: ['line', 'jitteredDots'],\n line_binnedDots: ['line', 'binnedDots'],\n line_errorbar: ['line', 'errorbar'],\n errorbar: ['errorbar'],\n sina: ['sina'],\n logo: ['logo']\n};\n\nexport const SCATTERPLOT_TEMPLATES_MAP: Record<\n ScatterplotLayersTemplate,\n ScatterplotLayer[]\n> = {\n dots: ['dots'],\n curve: ['curve'],\n curve_dots: ['curve', 'dots']\n};\n\nexport const SCATTERPLOT_UMAP_TEMPLATES_MAP: Partial<Record<\n ScatterplotLayersTemplate,\n ScatterplotLayer[]\n>> = {\n dots: ['dots'],\n curve_dots: ['curve', 'dots']\n};\n\nexport const HEATMAP_TEMPLATES_MAP: Record<HeatmapLayerTemplate, HeatmapLayer[]> = {\n heatmap: ['heatmap'],\n heatmapClustered: ['heatmapClustered']\n};\nexport const HISTOGRAM_TEMPLATES_MAP: Record<HistogramLayerTemplate, HistogramLayer[]> = {\n bins: ['bins']\n}\nexport const LAYER_TITLES: Record<Layer, string> = {\n box: 'Boxplot',\n binnedDots: 'Binned Dots',\n jitteredDots: 'Jittered Dots',\n violin: 'Violins',\n bar: 'Bar',\n stackedBar: 'Stacked Bar',\n stackedArea: 'Stacked Bar + Stream Area',\n line: 'Line',\n errorbar: 'Error Bar',\n sina: 'Sina',\n logo: 'Logo Plot',\n dots: 'Scatter Plot',\n curve: 'Curve',\n heatmap: 'Heatmap',\n heatmapClustered: 'Heatmap + Dendro',\n dendro: 'Dendrogram',\n bins: 'Histogram',\n bubble: 'Bubble plot'\n};\n\nexport type DiscreteStatisticsState = {\n overall: {\n data: { testMethod: null \| string };\n validity: { testMethod: boolean };\n };\n referenceGroup: {\n data: {\n testMethod: null \| string;\n referenceGroup: null \| string;\n correctionMethod: string;\n format: 'significance' \| 'pValue';\n ns: boolean;\n };\n validity: {\n testMethod: boolean;\n referenceGroup: boolean;\n };\n };\n pairwise: {\n data: {\n testMethod: null \| string;\n correctionMethod: string;\n format: 'significance' \| 'pValue';\n ns: boolean;\n };\n validity: { testMethod: boolean };\n };\n};\n\nexport type ScatterplotStatisticsState = {\n trend: {\n on: boolean,\n trim: boolean,\n showLegend: boolean\n },\n}\n\nexport type StatisticsState = DiscreteStatisticsState \| ScatterplotStatisticsState;\n\nexport function getInitialStatisticsState(chartType: ChartType, initialData?: DeepPartial<StatisticsState>): StatisticsState {\n if (chartType === 'discrete') {\n const initial = initialData as DiscreteStatisticsState;\n return {\n overall: {\n data: { testMethod: initial?.overall?.data?.testMethod ?? null },\n validity: { testMethod: initial?.overall?.validity?.testMethod ?? true }\n },\n referenceGroup: {\n data: {\n testMethod: initial?.referenceGroup?.data?.testMethod ?? null,\n referenceGroup: initial?.referenceGroup?.data?.referenceGroup ?? null,\n correctionMethod: initial?.referenceGroup?.data?.correctionMethod ?? 'Bonferroni',\n format: initial?.referenceGroup?.data?.format ?? 'significance',\n ns: initial?.referenceGroup?.data?.ns ?? false\n },\n validity: {\n testMethod: initial?.referenceGroup?.validity?.testMethod ?? true,\n referenceGroup: initial?.referenceGroup?.validity?.referenceGroup ?? true\n }\n },\n pairwise: {\n data: {\n testMethod: initial?.pairwise?.data?.testMethod ?? null,\n correctionMethod: initial?.pairwise?.data?.correctionMethod ?? 'Bonferroni',\n format: initial?.pairwise?.data?.format ?? 'significance',\n ns: initial?.pairwise?.data?.ns ?? false\n },\n validity: { testMethod: initial?.pairwise?.validity?.testMethod ?? true }\n }\n } as DiscreteStatisticsState;\n }\n const initial = initialData as ScatterplotStatisticsState;\n return {\n trend: {\n on: initial?.trend?.on ?? false,\n trim: initial?.trend?.trim ?? false,\n showLegend: initial?.trend?.showLegend ?? true\n }\n };\n}\n\nexport type NumberRange = { min: number, max: number }\nexport type MappingLink = { type: string, value?: string }; // {type: 'primaryGrouping'} for example\nexport type ColorAes = string \| MappingLink;\nexport type DotShapeAes = DotShape \| MappingLink;\nexport type DotSizeAes = number \| NumberRange;\nexport type LineTypeAes = LineType \| MappingLink;\nexport type FixedOrMappedAes = ColorAes \| DotShapeAes \| LineTypeAes;\n\nexport type ContinuousDataMappingSize = {\n column: string,\n range: NumberRange\n}\n\nexport type ContinuousDataMappingForGraph<T extends string \| number> = {columnName: ColumnNameSchema, domain: number[], range: T[], type: 'linear' \| 'log'}\n\nexport type ColumnNameSchema = {\n type: 'column'\n value: string,\n label?: string\n valueLabels?: string\n}\n\nexport function isNumberRange(v: number \| NumberRange \| null \| undefined): v is NumberRange {\n return typeof v !== 'undefined' && v !== null && typeof v === 'object' && 'min' in v && 'max' in v;\n}\n\nexport function isMappedAes(\n item: FixedOrMappedAes \| null \| string \| number \| boolean \| unknown\n): item is MappingLink {\n return typeof item === 'object' && item !== null && 'type' in item;\n}\n\nexport function isContinuousDataMapping(v: ContinuousDataMappingSize \| MappingLink \| number \| string \| null \| undefined): v is ContinuousDataMappingSize {\n return typeof v !== 'undefined' && v !== null && typeof v === 'object' && 'range' in v;\n}\n\nexport type LayersSettings = {\n //bubble\n bubble: {\n NAValueAs: number \| null,\n minRadius: number,\n maxRadius: number,\n normalizationDirection: 'row' \| 'column' \| null,\n normalizationMethod: 'standardScaling' \| 'meanNormalization',\n strokeColor: null \| string\n },\n // histogram\n bins: {\n fillColor: ColorAes \| null,\n opacity: number\n },\n //dendrogram\n dendro: {\n dotFill: ColorAes,\n dotShape: DotShapeAes,\n dotSize: DotSizeAes,\n lineColor: ColorAes,\n mode: 'normal' \| 'useAllNodesAsLeaves',\n leavesMode: 'normal' \| 'alignLeavesToLine',\n showTable: boolean,\n showLegend: boolean,\n },\n //heatmap\n heatmap: {\n NAValueAs: number \| null,\n normalizationDirection: 'row' \| 'column' \| null,\n normalizationMethod: 'standardScaling' \| 'meanNormalization',\n },\n heatmapClustered: {\n NAValueAs: number \| null,\n normalizationDirection: 'row' \| 'column' \| null,\n normalizationMethod: 'standardScaling' \| 'meanNormalization',\n dendrogramX: boolean,\n dendrogramY: boolean,\n disableClusteringX: boolean,\n disableClusteringY: boolean,\n },\n //scatterplot\n dots: {\n dotFill: ColorAes \| null,\n dotShape: DotShapeAes \| null,\n dotSize: ContinuousDataMappingSize \| number \| null\n },\n curve: {\n smoothing: boolean,\n lineColor: ColorAes\n },\n //discrete\n box: {\n showOutliers: boolean,\n fillColor: ColorAes \| null,\n lineColor: ColorAes,\n dotShape: DotShapeAes,\n lineType: LineTypeAes,\n gapWidth: number,\n opacity: number,\n stat: {\n low: number,\n middle: number,\n upper: number,\n k: number,\n },\n },\n binnedDots: {\n fillColor: ColorAes \| null,\n lineColor: ColorAes,\n opacity: number,\n showOutliers: boolean,\n },\n jitteredDots: {\n dotFill: ColorAes \| null,\n dotShape: DotShapeAes,\n lineColor: ColorAes,\n opacity: number,\n showOutliers: boolean,\n },\n violin: {\n fillColor: ColorAes \| null,\n lineColor: ColorAes,\n lineType: LineTypeAes,\n opacity: number,\n trim: boolean,\n showQuartiles: boolean,\n quartilesLineStyle: LineType,\n medianLineStyle: LineType\n },\n bar: {\n fillColor: ColorAes \| null,\n lineColor: ColorAes,\n opacity: number,\n height: 'max' \| 'mean' \| 'median',\n },\n stackedBar: {\n fillColor: ColorAes \| null,\n lineColor: ColorAes,\n opacity: number,\n normalize: boolean\n },\n stackedArea: {\n fillColor: ColorAes \| null,\n lineColor: ColorAes,\n barsOpacity: number,\n areaOpacity: number,\n normalize: boolean,\n showBars: boolean\n },\n line: {\n pointsValues: 'mean' \| 'median',\n lineColor: ColorAes \| null,\n dotShape: DotShapeAes,\n lineType: LineTypeAes,\n dotFill: ColorAes \| null,\n opacity: number,\n },\n errorbar: {\n pointsValues: 'mean' \| 'median',\n interval: 'sd' \| 'se' \| '',\n lineColor: ColorAes \| null,\n dotShape: DotShapeAes,\n dotFill: ColorAes \| null,\n opacity: number,\n },\n sina: {\n dotFill: ColorAes \| null,\n dotShape: DotShapeAes,\n opacity: number,\n showOutliers: boolean,\n },\n logo: {\n normalize: boolean,\n opacity: number,\n }\n};\nexport const DEFAULT_LAYERS_SETTINGS: () => LayersSettings = () => ({\n //bubble\n bubble: {\n NAValueAs: 0,\n strokeColor: null,\n minRadius: 3,\n maxRadius: 38,\n normalizationDirection: 'row',\n normalizationMethod: 'standardScaling',\n },\n // histogram\n bins: {\n fillColor: null,\n opacity: 1\n },\n //dendro\n dendro: {\n dotFill: DEFAULT_BLACK,\n dotShape: DEFAULT_DOT_SHAPE,\n dotSize: DEFAULT_DOT_SIZE,\n lineColor: DEFAULT_BLACK,\n mode: 'normal',\n leavesMode: 'normal',\n showTable: false,\n showLegend: true\n },\n //heatmap\n heatmap: {\n NAValueAs: 0,\n normalizationDirection: 'row',\n normalizationMethod: 'standardScaling',\n },\n heatmapClustered: {\n NAValueAs: 0,\n normalizationDirection: 'row',\n normalizationMethod: 'standardScaling',\n dendrogramX: true,\n dendrogramY: true,\n disableClusteringX: false,\n disableClusteringY: false\n },\n //scatterplot\n dots: {\n dotFill: null as ColorAes \| null,\n dotShape: null as DotShapeAes \| null,\n dotSize: null as ContinuousDataMappingSize \| number \| null\n },\n curve: { lineColor: DEFAULT_BLACK, smoothing: true },\n //discrete\n box: {\n showOutliers: true,\n fillColor: null as ColorAes \| null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n gapWidth: 0.2,\n opacity: 1,\n stat: {\n low: 0.25,\n middle: 0.5,\n upper: 0.75,\n k: 1.5\n }\n },\n binnedDots: {\n fillColor: null as ColorAes \| null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n showOutliers: true\n },\n jitteredDots: {\n dotFill: null as ColorAes \| null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n showOutliers: true\n },\n violin: {\n fillColor: null as ColorAes \| null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n opacity: 1,\n trim: false,\n showQuartiles: false,\n quartilesLineStyle: 'dashed',\n medianLineStyle: 'solid'\n },\n bar: {\n fillColor: null as ColorAes \| null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n height: 'max'\n },\n stackedBar: {\n fillColor: null as ColorAes \| null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n normalize: false\n },\n stackedArea: {\n fillColor: null as ColorAes \| null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n barsOpacity: 1,\n areaOpacity: 0.7,\n normalize: false,\n showBars: true\n },\n line: {\n pointsValues: 'mean',\n lineColor: null as ColorAes \| null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n dotFill: null as ColorAes \| null,\n opacity: 1\n },\n errorbar: {\n pointsValues: 'mean',\n interval: 'sd',\n lineColor: null as ColorAes \| null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n dotFill: null as ColorAes \| null,\n opacity: 1\n },\n sina: {\n dotFill: null as ColorAes \| null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n opacity: 1,\n showOutliers: true\n },\n logo: {\n normalize: false,\n opacity: 1\n }\n});\n\nexport function getDefaultLayersSettings() {\n return DEFAULT_LAYERS_SETTINGS();\n}\n\nconst DISCRETE_LAYERS: Layer[] = [\n 'box',\n 'binnedDots',\n 'jitteredDots',\n 'violin',\n 'bar',\n 'stackedBar',\n 'line',\n 'errorbar',\n 'sina',\n 'logo'\n];\nconst SCATTERPLOT_LAYERS: Layer[] = ['dots', 'curve'];\nconst SCATTERPLOT_UMAP_LAYERS: Layer[] = ['dots'];\nconst HEATMAP_LAYERS: Layer[] = ['heatmap', 'heatmapClustered'];\nconst DENDRO_LAYERS: Layer[] = ['dendro'];\nconst HISTOGRAM_LAYERS: Layer[] = ['bins'];\nconst BUBBLE_LAYERS: Layer[] = ['bubble'];\nconst LAYERS_BY_CHART_TYPE: Record<ChartType, Layer[]> = {\n discrete: DISCRETE_LAYERS,\n scatterplot: SCATTERPLOT_LAYERS,\n 'scatterplot-umap': SCATTERPLOT_UMAP_LAYERS,\n heatmap: HEATMAP_LAYERS,\n dendro: DENDRO_LAYERS,\n histogram: HISTOGRAM_LAYERS,\n bubble: BUBBLE_LAYERS\n};\n\nexport function getInitialLayersSettings(\n initialSettings?: DeepPartial<LayersSettings>\n): LayersSettings {\n const defaultSettings = DEFAULT_LAYERS_SETTINGS();\n const layers: Layer[] = Object.keys(defaultSettings) as Layer[];\n return layers.reduce((res, layer) => {\n Object.assign(\n res[layer],\n initialSettings?.[layer] ?? {}\n );\n return res;\n }, defaultSettings);\n}\n\nexport type Sorting = 'asc' \| 'desc';\nexport type AxesState = {\n title: { value: string; position: TitlePosition; mode: AxisTitleMode; facetTitleFrame: Frame };\n axisX: {\n labelsPosition: LabelsPosition; // for heatmap - top/bottom/left/right/hidden\n labelsRotation: LabelsRotation \| null; // only for discrete X axis - 'center'/'90deg'/'45deg'; null for auto mode before user chose\n axisLabelsAngle: 0 \| 45 \| 90; // for heatmap\n groupLabelsAngle: 0 \| 45 \| 90; // for heatmap\n titleMode: AxisTitleMode; // 'auto' - from column or 'custom' - from 'customTitle' field or 'hidden'\n customTitle: string; // user axis title, not default from column\n gridlines: boolean;\n linesBetweenCategories: boolean; // for discrete - position for vertical gridlines\n ticks: boolean;\n scale: Scale; // linear or log\n significantLinesStyle: LineType;\n sorting: Sorting;\n allowNullPrimaryGroups: boolean; // for discrete - allow group with null grouping value\n allowNullSecondaryGroups: boolean;\n order: {\n source: string,\n options: {value: string, label: string}[]\n } \| null;\n };\n axisY: {\n labelsRotation: LabelsRotation \| null; // only for discrete X axis - 'center'/'90deg'/'45deg'; null for auto mode before user chose\n titleMode: AxisTitleMode;\n customTitle: string;\n axisLabelsAngle: 0 \| 45 \| 90; // for heatmap\n groupLabelsAngle: 0 \| 45 \| 90; // for heatmap\n gridlines: boolean;\n ticks: boolean;\n scale: Scale;\n significantLinesStyle: LineType;\n sorting: Sorting;\n order: {\n source: string,\n options: {value: string, label: string}[]\n } \| null;\n };\n legend: {};\n other: {\n frame: Frame \| HeatmapFrame;\n reverse: boolean;\n facetSharedBy: 'x' \| 'y' \| 'xy' \| 'none';\n facetColumns: number;\n binsCount: number;\n groupingDirection: 'straight' \| 'reverse';\n groupingStack: 'vertical' \| 'horizontal';\n };\n};\n\nconst DEFAULT_AXES: () => AxesState = () => ({\n title: {\n value: 'Graph 1',\n position: 'center',\n mode: 'auto',\n facetTitleFrame: 'full'\n },\n axisX: {\n labelsPosition: 'bottom',\n labelsRotation: null,\n axisLabelsAngle: 90,\n groupLabelsAngle: 45,\n titleMode: 'auto',\n customTitle: '',\n gridlines: true,\n linesBetweenCategories: true,\n ticks: true,\n scale: 'linear',\n significantLinesStyle: 'dashed',\n sorting: 'asc',\n allowNullPrimaryGroups: false,\n allowNullSecondaryGroups: false,\n order: null\n },\n axisY: {\n labelsRotation: null,\n titleMode: 'auto',\n customTitle: '',\n axisLabelsAngle: 90,\n groupLabelsAngle: 45,\n gridlines: true,\n ticks: true,\n scale: 'linear',\n significantLinesStyle: 'dashed',\n sorting: 'asc',\n order: null\n },\n legend: {},\n other: {\n frame: 'full',\n reverse: false,\n facetSharedBy: 'xy',\n facetColumns: 3,\n binsCount: 10,\n groupingDirection: 'straight',\n groupingStack: 'vertical'\n }\n});\n\nfunction isHeatmapFrame(frame: Frame \| HeatmapFrame): frame is HeatmapFrame {\n return frame === 'full' \|\| frame === 'none';\n}\n\nexport function getInitialAxesSettings(\n chartType: ChartType,\n initialAxesSettings?: DeepPartial<AxesState>\n): AxesState {\n const defaultAxes = DEFAULT_AXES();\n if (!initialAxesSettings) {\n return defaultAxes;\n }\n\n // TODO: divide into separated settings for chart types\n function getFrame(frame?: Frame \| HeatmapFrame): Frame \| HeatmapFrame {\n if (!frame) {\n return 'full';\n }\n if (chartType === 'heatmap' && !isHeatmapFrame(frame)) {\n return 'full' as HeatmapFrame;\n }\n if (chartType !== 'heatmap' && isHeatmapFrame(frame)) {\n return frame === 'none' ? 'empty' : (frame as Frame);\n }\n return frame;\n }\n\n return {\n title: {\n ...defaultAxes.title,\n ...initialAxesSettings.title\n },\n axisX: {\n ...defaultAxes.axisX,\n ...initialAxesSettings.axisX\n },\n axisY: {\n ...defaultAxes.axisY,\n ...initialAxesSettings.axisY\n },\n legend: {\n ...defaultAxes.legend,\n ...initialAxesSettings.legend\n },\n other: {\n ...defaultAxes.other,\n ...initialAxesSettings.other,\n frame: getFrame(initialAxesSettings.other?.frame)\n }\n };\n}\n\nexport const LAYER_ICONS: Record<LayersTemplate, Component> = {\n box: BoxplotIcon,\n box_binnedDots: BoxplotAndBinnedIcon,\n box_jitteredDots: BoxplotAndJitterIcon,\n binnedDots: BinnedDotsIcon,\n jitteredDots: JitteredDotsIcon,\n violin: ViolinIcon,\n violin_binnedDots: ViolinAndBinnedIcon,\n violin_jitteredDots: ViolinAndJitterIcon,\n bar: BarIcon,\n bar_line: BarAndLineIcon,\n bar_errorbar: BarAndErrorIcon,\n stackedBar: StackedBarIcon,\n stackedArea: StackedBarIcon,\n line: LineIcon,\n line_binnedDots: 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1	+ {"version":3,"file":"constantsCommon.js","sources":["../../src/GraphMaker/constantsCommon.ts"],"sourcesContent":["import type { ChartType } from '@milaboratories/pf-plots';\nimport type { Component } from 'vue';\nimport {\n DotShape,\n LineType\n} from './components/AesSettings/types';\nimport {\n DEFAULT_BLACK,\n DEFAULT_DOT_SHAPE,\n DEFAULT_LINE_TYPE\n} from './constantsAesthetic';\nimport { DEFAULT_DOT_SIZE, DEFAULT_LINE_COLOR } from './dataBindAes';\nimport BarAndErrorIcon from './icons/BarAndErrorIcon.vue';\nimport BarAndLineIcon from './icons/BarAndLineIcon.vue';\nimport BarIcon from './icons/BarIcon.vue';\nimport BinnedDotsIcon from './icons/BinnedDotsIcon.vue';\nimport BoxplotAndBinnedIcon from './icons/BoxplotAndBinnedIcon.vue';\nimport BoxplotAndJitterIcon from './icons/BoxplotAndJitterIcon.vue';\nimport BoxplotIcon from './icons/BoxplotIcon.vue';\nimport DendroIcon from './icons/DendroIcon.vue';\nimport HeatmapIcon from './icons/HeatmapIcon.vue';\nimport JitteredDotsIcon from './icons/JitteredDotsIcon.vue';\nimport LineAndBinnedIcon from './icons/LineAndBinnedIcon.vue';\nimport LineAndErrorbarIcon from './icons/LineAndErrorbarIcon.vue';\nimport LineAndJitterIcon from './icons/LineAndJitterIcon.vue';\nimport LineIcon from './icons/LineIcon.vue';\nimport LogoIcon from './icons/LogoIcon.vue';\nimport ScatterplotIcon from './icons/ScatterplotIcon.vue';\nimport SinaIcon from './icons/SinaIcon.vue';\nimport StackedBarIcon from './icons/StackedBarIcon.vue';\nimport ViolinAndBinnedIcon from './icons/ViolinAndBinnedIcon.vue';\nimport ViolinAndJitterIcon from './icons/ViolinAndJitterIcon.vue';\nimport ViolinIcon from './icons/ViolinIcon.vue';\nimport {\n AxisTitleMode,\n DeepPartial,\n DiscreteLayer,\n DiscreteLayersTemplate,\n Frame,\n HeatmapFrame, HeatmapLayer, HeatmapLayerTemplate, HistogramLayer, HistogramLayerTemplate,\n LabelsPosition,\n LabelsRotation,\n Layer,\n LayersTemplate,\n Scale,\n ScatterplotLayer,\n ScatterplotLayersTemplate,\n TitlePosition\n} from './types';\n\nexport const DEFAULT_CHART_TYPE: ChartType = 'discrete';\n\n/** Annotations keys */\nexport const THRESHOLDS_KEY = 'pl7.app/graph/thresholds';\nexport const LOWER_LIMIT_KEY = 'pl7.app/graph/axis/lowerLimit';\nexport const UPPER_LIMIT_KEY = 'pl7.app/graph/axis/upperLimit';\nexport const SYMMETRIC_RANGE_KEY = 'pl7.app/graph/axis/symmetricRange';\nexport const PALETTE_KEY = 'pl7.app/graph/palette';\nexport const COLUMN_MIN_KEY = 'pl7.app/min';\nexport const COLUMN_MAX_KEY = 'pl7.app/max';\nexport const SUBSET_FILTER_KEY = 'pl7.app/isSubset';\n\nexport function getInitialTemplate(\n restoredTemplate: LayersTemplate \| null,\n chartType: ChartType\n) {\n if (chartType === 'discrete') {\n return restoredTemplate &&\n DISCRETE_TEMPLATES_MAP[restoredTemplate as DiscreteLayersTemplate]\n ? restoredTemplate\n : 'box';\n }\n if (chartType === 'scatterplot' \|\| chartType === 'scatterplot-umap') {\n return restoredTemplate &&\n SCATTERPLOT_TEMPLATES_MAP[restoredTemplate as ScatterplotLayersTemplate]\n ? restoredTemplate\n : 'dots';\n }\n if (chartType === 'dendro') {\n return 'dendro';\n }\n return restoredTemplate ?? 'heatmap';\n}\n\nexport const DISCRETE_TEMPLATES_MAP: Record<\n DiscreteLayersTemplate,\n DiscreteLayer[]\n> = {\n box: ['box'],\n box_binnedDots: ['box', 'binnedDots'],\n box_jitteredDots: ['box', 'jitteredDots'],\n violin: ['violin'],\n violin_binnedDots: ['violin', 'binnedDots'],\n violin_jitteredDots: ['violin', 'jitteredDots'],\n binnedDots: ['binnedDots'],\n jitteredDots: ['jitteredDots'],\n bar: ['bar'],\n bar_line: ['bar', 'line'],\n bar_errorbar: ['bar', 'errorbar'],\n stackedBar: ['stackedBar'],\n stackedArea: ['stackedArea'],\n line: ['line'],\n line_jitteredDots: ['line', 'jitteredDots'],\n line_binnedDots: ['line', 'binnedDots'],\n line_errorbar: ['line', 'errorbar'],\n errorbar: ['errorbar'],\n sina: ['sina'],\n logo: ['logo']\n};\n\nexport const SCATTERPLOT_TEMPLATES_MAP: Record<\n ScatterplotLayersTemplate,\n ScatterplotLayer[]\n> = {\n dots: ['dots'],\n curve: ['curve'],\n curve_dots: ['curve', 'dots']\n};\n\nexport const SCATTERPLOT_UMAP_TEMPLATES_MAP: Partial<Record<\n ScatterplotLayersTemplate,\n ScatterplotLayer[]\n>> = {\n dots: ['dots'],\n curve_dots: ['curve', 'dots']\n};\n\nexport const HEATMAP_TEMPLATES_MAP: Record<HeatmapLayerTemplate, HeatmapLayer[]> = {\n heatmap: ['heatmap'],\n heatmapClustered: ['heatmapClustered']\n};\nexport const HISTOGRAM_TEMPLATES_MAP: Record<HistogramLayerTemplate, HistogramLayer[]> = {\n bins: ['bins']\n}\nexport const LAYER_TITLES: Record<Layer, string> = {\n box: 'Boxplot',\n binnedDots: 'Binned Dots',\n jitteredDots: 'Jittered Dots',\n violin: 'Violins',\n bar: 'Bar',\n stackedBar: 'Stacked Bar',\n stackedArea: 'Stacked Bar + Stream Area',\n line: 'Line',\n errorbar: 'Error Bar',\n sina: 'Sina',\n logo: 'Logo Plot',\n dots: 'Scatter Plot',\n curve: 'Curve',\n heatmap: 'Heatmap',\n heatmapClustered: 'Heatmap + Dendro',\n dendro: 'Dendrogram',\n bins: 'Histogram',\n bubble: 'Bubble plot'\n};\n\nexport type DiscreteStatisticsState = {\n overall: {\n data: { testMethod: null \| string };\n validity: { testMethod: boolean };\n };\n referenceGroup: {\n data: {\n testMethod: null \| string;\n referenceGroup: null \| string;\n correctionMethod: string;\n format: 'significance' \| 'pValue';\n ns: boolean;\n };\n validity: {\n testMethod: boolean;\n referenceGroup: boolean;\n };\n };\n pairwise: {\n data: {\n testMethod: null \| string;\n correctionMethod: string;\n format: 'significance' \| 'pValue';\n ns: boolean;\n };\n validity: { testMethod: boolean };\n };\n};\n\nexport type ScatterplotStatisticsState = {\n trend: {\n on: boolean,\n trim: boolean,\n showLegend: boolean\n },\n}\n\nexport type StatisticsState = DiscreteStatisticsState \| ScatterplotStatisticsState;\n\nexport function getInitialStatisticsState(chartType: ChartType, initialData?: DeepPartial<StatisticsState>): StatisticsState {\n if (chartType === 'discrete') {\n const initial = initialData as DiscreteStatisticsState;\n return {\n overall: {\n data: { testMethod: initial?.overall?.data?.testMethod ?? null },\n validity: { testMethod: initial?.overall?.validity?.testMethod ?? true }\n },\n referenceGroup: {\n data: {\n testMethod: initial?.referenceGroup?.data?.testMethod ?? null,\n referenceGroup: initial?.referenceGroup?.data?.referenceGroup ?? null,\n correctionMethod: initial?.referenceGroup?.data?.correctionMethod ?? 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linear or log\n significantLinesStyle: LineType;\n sorting: Sorting;\n allowNullPrimaryGroups: boolean; // for discrete - allow group with null grouping value\n allowNullSecondaryGroups: boolean;\n order: {\n source: string,\n options: {value: string, label: string}[]\n } \| null;\n };\n axisY: {\n labelsRotation: LabelsRotation \| null; // only for discrete X axis - 'center'/'90deg'/'45deg'; null for auto mode before user chose\n titleMode: AxisTitleMode;\n customTitle: string;\n axisLabelsAngle: 0 \| 45 \| 90; // for heatmap\n groupLabelsAngle: 0 \| 45 \| 90; // for heatmap\n gridlines: boolean;\n ticks: boolean;\n scale: Scale;\n significantLinesStyle: LineType;\n sorting: Sorting;\n order: {\n source: string,\n options: {value: string, label: string}[]\n } \| null;\n };\n legend: {};\n other: {\n frame: Frame \| HeatmapFrame;\n reverse: boolean;\n facetSharedBy: 'x' \| 'y' \| 'xy' \| 'none';\n facetColumns: number;\n binsCount: number;\n groupingDirection: 'straight' \| 'reverse';\n groupingStack: 'vertical' \| 'horizontal';\n };\n};\n\nconst DEFAULT_AXES: () => AxesState = () => ({\n title: {\n value: 'Graph 1',\n position: 'center',\n mode: 'auto',\n facetTitleFrame: 'full'\n },\n axisX: {\n labelsPosition: 'bottom',\n labelsRotation: null,\n axisLabelsAngle: 90,\n groupLabelsAngle: 45,\n titleMode: 'auto',\n customTitle: '',\n gridlines: true,\n linesBetweenCategories: true,\n ticks: true,\n scale: 'linear',\n significantLinesStyle: 'dashed',\n sorting: 'asc',\n allowNullPrimaryGroups: false,\n allowNullSecondaryGroups: false,\n order: null\n },\n axisY: {\n labelsRotation: null,\n titleMode: 'auto',\n customTitle: '',\n axisLabelsAngle: 90,\n groupLabelsAngle: 45,\n gridlines: true,\n ticks: true,\n scale: 'linear',\n significantLinesStyle: 'dashed',\n sorting: 'asc',\n order: null\n },\n legend: {},\n other: {\n frame: 'full',\n reverse: false,\n facetSharedBy: 'xy',\n facetColumns: 3,\n binsCount: 10,\n groupingDirection: 'straight',\n groupingStack: 'vertical'\n }\n});\n\nfunction isHeatmapFrame(frame: Frame \| HeatmapFrame): frame is HeatmapFrame {\n return frame === 'full' \|\| frame === 'none';\n}\n\nexport function getInitialAxesSettings(\n chartType: ChartType,\n initialAxesSettings?: DeepPartial<AxesState>\n): AxesState {\n const defaultAxes = DEFAULT_AXES();\n if (!initialAxesSettings) {\n return defaultAxes;\n }\n\n // TODO: divide into separated settings for chart types\n function getFrame(frame?: Frame \| HeatmapFrame): Frame \| HeatmapFrame {\n if (!frame) {\n return 'full';\n }\n if (chartType === 'heatmap' && !isHeatmapFrame(frame)) {\n return 'full' as HeatmapFrame;\n }\n if (chartType !== 'heatmap' && isHeatmapFrame(frame)) {\n return frame === 'none' ? 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package/dist/GraphMaker/forms/DataMappingForm/DendroForm.vue.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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