@milaboratories/graph-maker 1.1.141 → 1.1.142

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Files changed (41) hide show
  1. package/dist/GraphMaker/components/LassoControls/index.vue.js +1 -1
  2. package/dist/GraphMaker/constantsCommon.d.ts +8 -0
  3. package/dist/GraphMaker/constantsCommon.d.ts.map +1 -1
  4. package/dist/GraphMaker/constantsCommon.js +94 -83
  5. package/dist/GraphMaker/constantsCommon.js.map +1 -1
  6. package/dist/GraphMaker/forms/LayersForm/Layer/discrete/StackedArea.vue.d.ts +3 -0
  7. package/dist/GraphMaker/forms/LayersForm/Layer/discrete/StackedArea.vue.d.ts.map +1 -0
  8. package/dist/GraphMaker/forms/LayersForm/Layer/discrete/StackedArea.vue.js +90 -0
  9. package/dist/GraphMaker/forms/LayersForm/Layer/discrete/StackedArea.vue.js.map +1 -0
  10. package/dist/GraphMaker/forms/LayersForm/Layer/discrete/StackedArea.vue2.js +5 -0
  11. package/dist/GraphMaker/forms/LayersForm/Layer/discrete/StackedArea.vue2.js.map +1 -0
  12. package/dist/GraphMaker/forms/LayersForm/index.vue.d.ts.map +1 -1
  13. package/dist/GraphMaker/forms/LayersForm/index.vue.js +45 -43
  14. package/dist/GraphMaker/forms/LayersForm/index.vue.js.map +1 -1
  15. package/dist/GraphMaker/index.vue.d.ts.map +1 -1
  16. package/dist/GraphMaker/index.vue.js +0 -1
  17. package/dist/GraphMaker/index.vue.js.map +1 -1
  18. package/dist/GraphMaker/types.d.ts +1 -1
  19. package/dist/GraphMaker/types.d.ts.map +1 -1
  20. package/dist/GraphMaker/utils/createChartSettingsForRender/composeDiscreteSettings.d.ts +16 -0
  21. package/dist/GraphMaker/utils/createChartSettingsForRender/composeDiscreteSettings.d.ts.map +1 -1
  22. package/dist/GraphMaker/utils/createChartSettingsForRender/getLayersDataFromForms.d.ts.map +1 -1
  23. package/dist/GraphMaker/utils/createChartSettingsForRender/getLayersDataFromForms.js +84 -70
  24. package/dist/GraphMaker/utils/createChartSettingsForRender/getLayersDataFromForms.js.map +1 -1
  25. package/dist/node_modules/@milaboratories/miplots4/dist/MiPlots.js +1 -1
  26. package/dist/node_modules/@milaboratories/miplots4/dist/discrete/DiscreteSettingsImpl.js +185 -164
  27. package/dist/node_modules/@milaboratories/miplots4/dist/discrete/DiscreteSettingsImpl.js.map +1 -1
  28. package/dist/node_modules/@milaboratories/miplots4/dist/discrete/components/Chart.js +120 -103
  29. package/dist/node_modules/@milaboratories/miplots4/dist/discrete/components/Chart.js.map +1 -1
  30. package/dist/node_modules/@milaboratories/miplots4/dist/discrete/components/ChartsGroup.js +4 -4
  31. package/dist/node_modules/@milaboratories/miplots4/dist/discrete/components/layers/StackedAreaElement.js +105 -0
  32. package/dist/node_modules/@milaboratories/miplots4/dist/discrete/components/layers/StackedAreaElement.js.map +1 -0
  33. package/dist/node_modules/@milaboratories/miplots4/dist/discrete/components/layers/StackedBarElement.js +66 -59
  34. package/dist/node_modules/@milaboratories/miplots4/dist/discrete/components/layers/StackedBarElement.js.map +1 -1
  35. package/dist/node_modules/@milaboratories/miplots4/dist/discrete/index.js +57 -54
  36. package/dist/node_modules/@milaboratories/miplots4/dist/discrete/index.js.map +1 -1
  37. package/dist/node_modules/@milaboratories/miplots4/dist/discrete/layers/stackedArea.js +17 -0
  38. package/dist/node_modules/@milaboratories/miplots4/dist/discrete/layers/stackedArea.js.map +1 -0
  39. package/dist/node_modules/@milaboratories/miplots4/dist/types/discrete.js +24 -9
  40. package/dist/node_modules/@milaboratories/miplots4/dist/types/discrete.js.map +1 -1
  41. package/package.json +2 -2
package/dist/GraphMaker/components/LassoControls/index.vue.js CHANGED
@@ -24,8 +24,8 @@ import "../../../node_modules/@milaboratories/miplots4/dist/node_modules/d3-hier
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  import "../../../node_modules/@milaboratories/miplots4/dist/DataFrame.js";
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  import "../../../node_modules/@milaboratories/miplots4/dist/common/useDataFrame.js";
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  import "../../../node_modules/@milaboratories/miplots4/dist/utils/arrangeLegendParts.js";
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- import "../../../node_modules/@milaboratories/miplots4/dist/common/ErrorBoundary.js";
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  import "../../../node_modules/@milaboratories/miplots4/dist/node_modules/d3-shape/src/curve/linear.js";
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+ import "../../../node_modules/@milaboratories/miplots4/dist/common/ErrorBoundary.js";
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  import "../../../node_modules/@milaboratories/miplots4/dist/node_modules/d3-shape/src/curve/basis.js";
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  import "../../../node_modules/@milaboratories/miplots4/dist/node_modules/@stdlib/stats-anova1/lib/main.js";
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  import "../../../node_modules/@milaboratories/miplots4/dist/node_modules/@stdlib/stats-ttest/lib/main.js";
package/dist/GraphMaker/constantsCommon.d.ts CHANGED
@@ -191,6 +191,14 @@ export type LayersSettings = {
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  opacity: number;
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  normalize: boolean;
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  };
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+ stackedArea: {
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+ fillColor: ColorAes | null;
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+ lineColor: ColorAes;
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+ barsOpacity: number;
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+ areaOpacity: number;
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+ normalize: boolean;
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+ showBars: boolean;
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+ };
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  line: {
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  pointsValues: 'mean' | 'median';
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  lineColor: ColorAes | null;
package/dist/GraphMaker/constantsCommon.d.ts.map CHANGED
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package/dist/GraphMaker/constantsCommon.js CHANGED
@@ -1,28 +1,28 @@
1
- import { DEFAULT_DOT_SHAPE as i, DEFAULT_LINE_TYPE as d, DEFAULT_BLACK as u } from "./constantsAesthetic.js";
2
- import { DEFAULT_LINE_COLOR as s, DEFAULT_DOT_SIZE as K } from "./dataBindAes.js";
3
- import X from "./icons/BarAndErrorIcon.vue.js";
4
- import G from "./icons/BarAndLineIcon.vue.js";
5
- import Y from "./icons/BarIcon.vue.js";
6
- import W from "./icons/BinnedDotsIcon.vue.js";
7
- import J from "./icons/BoxplotAndBinnedIcon.vue.js";
8
- import q from "./icons/BoxplotAndJitterIcon.vue.js";
9
- import Q from "./icons/BoxplotIcon.vue.js";
10
- import N from "./icons/DendroIcon.vue.js";
11
- import k from "./icons/HeatmapIcon.vue.js";
12
- import Z from "./icons/JitteredDotsIcon.vue.js";
13
- import $ from "./icons/LineAndBinnedIcon.vue.js";
14
- import ee from "./icons/LineAndErrorbarIcon.vue.js";
1
+ import { DEFAULT_DOT_SHAPE as s, DEFAULT_LINE_TYPE as d, DEFAULT_BLACK as u } from "./constantsAesthetic.js";
2
+ import { DEFAULT_LINE_COLOR as i, DEFAULT_DOT_SIZE as X } from "./dataBindAes.js";
3
+ import W from "./icons/BarAndErrorIcon.vue.js";
4
+ import F from "./icons/BarAndLineIcon.vue.js";
5
+ import G from "./icons/BarIcon.vue.js";
6
+ import J from "./icons/BinnedDotsIcon.vue.js";
7
+ import q from "./icons/BoxplotAndBinnedIcon.vue.js";
8
+ import Q from "./icons/BoxplotAndJitterIcon.vue.js";
9
+ import Z from "./icons/BoxplotIcon.vue.js";
10
+ import Y from "./icons/DendroIcon.vue.js";
11
+ import N from "./icons/HeatmapIcon.vue.js";
12
+ import $ from "./icons/JitteredDotsIcon.vue.js";
13
+ import ee from "./icons/LineAndBinnedIcon.vue.js";
14
+ import oe from "./icons/LineAndErrorbarIcon.vue.js";
15
15
  import U from "./icons/LineAndJitterIcon.vue.js";
16
16
  import V from "./icons/LineIcon.vue.js";
17
- import oe from "./icons/LogoIcon.vue.js";
18
- import te from "./icons/ScatterplotIcon.vue.js";
19
- import re from "./icons/SinaIcon.vue.js";
20
- import ne from "./icons/StackedBarIcon.vue.js";
21
- import le from "./icons/ViolinAndBinnedIcon.vue.js";
22
- import ae from "./icons/ViolinAndJitterIcon.vue.js";
17
+ import te from "./icons/LogoIcon.vue.js";
18
+ import re from "./icons/ScatterplotIcon.vue.js";
19
+ import ne from "./icons/SinaIcon.vue.js";
20
+ import z from "./icons/StackedBarIcon.vue.js";
21
+ import ae from "./icons/ViolinAndBinnedIcon.vue.js";
22
+ import le from "./icons/ViolinAndJitterIcon.vue.js";
23
23
  import ie from "./icons/ViolinIcon.vue.js";
24
- const we = "pl7.app/graph/thresholds", Re = "pl7.app/graph/axis/lowerLimit", je = "pl7.app/graph/axis/upperLimit", Fe = "pl7.app/graph/axis/symmetricRange", Ge = "pl7.app/graph/palette", Ye = "pl7.app/axisNature", Ne = "pl7.app/isSubset";
25
- function ke(o, t) {
24
+ const we = "pl7.app/graph/thresholds", ke = "pl7.app/graph/axis/lowerLimit", Re = "pl7.app/graph/axis/upperLimit", je = "pl7.app/graph/axis/symmetricRange", Fe = "pl7.app/graph/palette", Ge = "pl7.app/axisNature", Ye = "pl7.app/isSubset";
25
+ function Ne(o, t) {
26
26
  return t === "discrete" ? o && se[o] ? o : "box" : t === "scatterplot" || t === "scatterplot-umap" ? o && de[o] ? o : "dots" : t === "dendro" ? "dendro" : o ?? "heatmap";
27
27
  }
28
28
  const se = {
@@ -38,6 +38,7 @@ const se = {
38
38
  bar_line: ["bar", "line"],
39
39
  bar_errorbar: ["bar", "errorbar"],
40
40
  stackedBar: ["stackedBar"],
41
+ stackedArea: ["stackedArea"],
41
42
  line: ["line"],
42
43
  line_jitteredDots: ["line", "jitteredDots"],
43
44
  line_binnedDots: ["line", "binnedDots"],
@@ -64,6 +65,7 @@ const se = {
64
65
  violin: "Violins",
65
66
  bar: "Bar",
66
67
  stackedBar: "Stacked Bar",
68
+ stackedArea: "Stacked Bar + Stream Area",
67
69
  line: "Line",
68
70
  errorbar: "Error Bar",
69
71
  sina: "Sina",
@@ -77,12 +79,12 @@ const se = {
77
79
  bubble: "Bubble plot"
78
80
  };
79
81
  function Xe(o, t) {
80
- var a, l, n, c, p, m, f, b, _, h, E, T, A, L, g, D, S, I, M, x, v, C, y, B, H, O, P, w, R, j, F;
82
+ var l, a, n, c, p, m, f, b, _, h, A, E, T, L, g, D, S, I, M, x, v, C, y, B, H, O, P, w, k, R, j;
81
83
  if (o === "discrete") {
82
84
  const e = t;
83
85
  return {
84
86
  overall: {
85
- data: { testMethod: ((l = (a = e == null ? void 0 : e.overall) == null ? void 0 : a.data) == null ? void 0 : l.testMethod) ?? null },
87
+ data: { testMethod: ((a = (l = e == null ? void 0 : e.overall) == null ? void 0 : l.data) == null ? void 0 : a.testMethod) ?? null },
86
88
  validity: { testMethod: ((c = (n = e == null ? void 0 : e.overall) == null ? void 0 : n.validity) == null ? void 0 : c.testMethod) ?? !0 }
87
89
  },
88
90
  referenceGroup: {
@@ -90,8 +92,8 @@ function Xe(o, t) {
90
92
  testMethod: ((m = (p = e == null ? void 0 : e.referenceGroup) == null ? void 0 : p.data) == null ? void 0 : m.testMethod) ?? null,
91
93
  referenceGroup: ((b = (f = e == null ? void 0 : e.referenceGroup) == null ? void 0 : f.data) == null ? void 0 : b.referenceGroup) ?? null,
92
94
  correctionMethod: ((h = (_ = e == null ? void 0 : e.referenceGroup) == null ? void 0 : _.data) == null ? void 0 : h.correctionMethod) ?? "Bonferroni",
93
- format: ((T = (E = e == null ? void 0 : e.referenceGroup) == null ? void 0 : E.data) == null ? void 0 : T.format) ?? "significance",
94
- ns: ((L = (A = e == null ? void 0 : e.referenceGroup) == null ? void 0 : A.data) == null ? void 0 : L.ns) ?? !1
95
+ format: ((E = (A = e == null ? void 0 : e.referenceGroup) == null ? void 0 : A.data) == null ? void 0 : E.format) ?? "significance",
96
+ ns: ((L = (T = e == null ? void 0 : e.referenceGroup) == null ? void 0 : T.data) == null ? void 0 : L.ns) ?? !1
95
97
  },
96
98
  validity: {
97
99
  testMethod: ((D = (g = e == null ? void 0 : e.referenceGroup) == null ? void 0 : g.validity) == null ? void 0 : D.testMethod) ?? !0,
@@ -112,9 +114,9 @@ function Xe(o, t) {
112
114
  const r = t;
113
115
  return {
114
116
  trend: {
115
- on: ((R = r == null ? void 0 : r.trend) == null ? void 0 : R.on) ?? !1,
116
- trim: ((j = r == null ? void 0 : r.trend) == null ? void 0 : j.trim) ?? !1,
117
- showLegend: ((F = r == null ? void 0 : r.trend) == null ? void 0 : F.showLegend) ?? !0
117
+ on: ((k = r == null ? void 0 : r.trend) == null ? void 0 : k.on) ?? !1,
118
+ trim: ((R = r == null ? void 0 : r.trend) == null ? void 0 : R.trim) ?? !1,
119
+ showLegend: ((j = r == null ? void 0 : r.trend) == null ? void 0 : j.showLegend) ?? !0
118
120
  }
119
121
  };
120
122
  }
@@ -145,8 +147,8 @@ const ue = () => ({
145
147
  //dendro
146
148
  dendro: {
147
149
  dotFill: u,
148
- dotShape: i,
149
- dotSize: K,
150
+ dotShape: s,
151
+ dotSize: X,
150
152
  lineColor: u,
151
153
  mode: "normal",
152
154
  leavesMode: "normal",
@@ -179,8 +181,8 @@ const ue = () => ({
179
181
  box: {
180
182
  showOutliers: !0,
181
183
  fillColor: null,
182
- lineColor: s,
183
- dotShape: i,
184
+ lineColor: i,
185
+ dotShape: s,
184
186
  lineType: d,
185
187
  gapWidth: 0.2,
186
188
  opacity: 1,
@@ -193,20 +195,20 @@ const ue = () => ({
193
195
  },
194
196
  binnedDots: {
195
197
  fillColor: null,
196
- lineColor: s,
198
+ lineColor: i,
197
199
  opacity: 1,
198
200
  showOutliers: !0
199
201
  },
200
202
  jitteredDots: {
201
203
  dotFill: null,
202
- dotShape: i,
203
- lineColor: s,
204
+ dotShape: s,
205
+ lineColor: i,
204
206
  opacity: 1,
205
207
  showOutliers: !0
206
208
  },
207
209
  violin: {
208
210
  fillColor: null,
209
- lineColor: s,
211
+ lineColor: i,
210
212
  lineType: d,
211
213
  opacity: 1,
212
214
  trim: !1,
@@ -216,20 +218,28 @@ const ue = () => ({
216
218
  },
217
219
  bar: {
218
220
  fillColor: null,
219
- lineColor: s,
221
+ lineColor: i,
220
222
  opacity: 1,
221
223
  height: "max"
222
224
  },
223
225
  stackedBar: {
224
226
  fillColor: null,
225
- lineColor: s,
227
+ lineColor: i,
226
228
  opacity: 1,
227
229
  normalize: !1
228
230
  },
231
+ stackedArea: {
232
+ fillColor: null,
233
+ lineColor: i,
234
+ barsOpacity: 1,
235
+ areaOpacity: 0.7,
236
+ normalize: !1,
237
+ showBars: !0
238
+ },
229
239
  line: {
230
240
  pointsValues: "mean",
231
241
  lineColor: null,
232
- dotShape: i,
242
+ dotShape: s,
233
243
  lineType: d,
234
244
  dotFill: null,
235
245
  opacity: 1
@@ -238,13 +248,13 @@ const ue = () => ({
238
248
  pointsValues: "mean",
239
249
  interval: "sd",
240
250
  lineColor: null,
241
- dotShape: i,
251
+ dotShape: s,
242
252
  dotFill: null,
243
253
  opacity: 1
244
254
  },
245
255
  sina: {
246
256
  dotFill: null,
247
- dotShape: i,
257
+ dotShape: s,
248
258
  opacity: 1,
249
259
  showOutliers: !0
250
260
  },
@@ -255,10 +265,10 @@ const ue = () => ({
255
265
  });
256
266
  function Qe(o) {
257
267
  const t = ue();
258
- return Object.keys(t).reduce((a, l) => (Object.assign(
259
- a[l],
260
- (o == null ? void 0 : o[l]) ?? {}
261
- ), a), t);
268
+ return Object.keys(t).reduce((l, a) => (Object.assign(
269
+ l[a],
270
+ (o == null ? void 0 : o[a]) ?? {}
271
+ ), l), t);
262
272
  }
263
273
  const ce = () => ({
264
274
  title: {
@@ -305,16 +315,16 @@ const ce = () => ({
305
315
  groupingStack: "vertical"
306
316
  }
307
317
  });
308
- function z(o) {
318
+ function K(o) {
309
319
  return o === "full" || o === "none";
310
320
  }
311
321
  function Ze(o, t) {
312
- var l;
322
+ var a;
313
323
  const r = ce();
314
324
  if (!t)
315
325
  return r;
316
- function a(n) {
317
- return !n || o === "heatmap" && !z(n) ? "full" : o !== "heatmap" && z(n) && n === "none" ? "empty" : n;
326
+ function l(n) {
327
+ return !n || o === "heatmap" && !K(n) ? "full" : o !== "heatmap" && K(n) && n === "none" ? "empty" : n;
318
328
  }
319
329
  return {
320
330
  title: {
@@ -336,38 +346,39 @@ function Ze(o, t) {
336
346
  other: {
337
347
  ...r.other,
338
348
  ...t.other,
339
- frame: a((l = t.other) == null ? void 0 : l.frame)
349
+ frame: l((a = t.other) == null ? void 0 : a.frame)
340
350
  }
341
351
  };
342
352
  }
343
353
  const $e = {
344
- box: Q,
345
- box_binnedDots: J,
346
- box_jitteredDots: q,
347
- binnedDots: W,
348
- jitteredDots: Z,
354
+ box: Z,
355
+ box_binnedDots: q,
356
+ box_jitteredDots: Q,
357
+ binnedDots: J,
358
+ jitteredDots: $,
349
359
  violin: ie,
350
- violin_binnedDots: le,
351
- violin_jitteredDots: ae,
352
- bar: Y,
353
- bar_line: G,
354
- bar_errorbar: X,
355
- stackedBar: ne,
360
+ violin_binnedDots: ae,
361
+ violin_jitteredDots: le,
362
+ bar: G,
363
+ bar_line: F,
364
+ bar_errorbar: W,
365
+ stackedBar: z,
366
+ stackedArea: z,
356
367
  line: V,
357
- line_binnedDots: $,
368
+ line_binnedDots: ee,
358
369
  line_jitteredDots: U,
359
- line_errorbar: ee,
360
- errorbar: G,
361
- sina: re,
362
- logo: oe,
363
- dots: te,
370
+ line_errorbar: oe,
371
+ errorbar: F,
372
+ sina: ne,
373
+ logo: te,
374
+ dots: re,
364
375
  curve: V,
365
376
  curve_dots: U,
366
- heatmap: k,
367
- heatmapClustered: N,
368
- dendro: N,
369
- bins: Y,
370
- bubble: k
377
+ heatmap: N,
378
+ heatmapClustered: Y,
379
+ dendro: Y,
380
+ bins: G,
381
+ bubble: N
371
382
  }, eo = [
372
383
  { value: "ttest", text: "TTest" },
373
384
  { value: "anova", text: "ANOVA" },
@@ -384,35 +395,35 @@ const $e = {
384
395
  ], to = [
385
396
  { value: "pValue", text: "p-value" },
386
397
  { value: "significance", text: "significance" }
387
- ], ro = 600, no = 350, lo = 400, ao = 250, io = 100;
398
+ ], ro = 600, no = 350, ao = 400, lo = 250, io = 100;
388
399
  export {
389
- Ye as AXIS_NATURE_KEY,
400
+ Ge as AXIS_NATURE_KEY,
390
401
  no as DEFAULT_HEIGHT,
391
- ao as DEFAULT_HEIGHT_SMALL,
402
+ lo as DEFAULT_HEIGHT_SMALL,
392
403
  ue as DEFAULT_LAYERS_SETTINGS,
393
404
  ro as DEFAULT_WIDTH,
394
- lo as DEFAULT_WIDTH_SMALL,
405
+ ao as DEFAULT_WIDTH_SMALL,
395
406
  se as DISCRETE_TEMPLATES_MAP,
396
407
  to as FORMAT_P_VALUE_OPTIONS,
397
408
  Ve as HEATMAP_TEMPLATES_MAP,
398
409
  ze as HISTOGRAM_TEMPLATES_MAP,
399
410
  $e as LAYER_ICONS,
400
411
  Ke as LAYER_TITLES,
401
- Re as LOWER_LIMIT_KEY,
412
+ ke as LOWER_LIMIT_KEY,
402
413
  io as MAX_SEARCH_OPTIONS_LIST_LENGTH,
403
- Ge as PALETTE_KEY,
414
+ Fe as PALETTE_KEY,
404
415
  de as SCATTERPLOT_TEMPLATES_MAP,
405
416
  Ue as SCATTERPLOT_UMAP_TEMPLATES_MAP,
406
417
  oo as STAT_CORRECTION_METHOD,
407
418
  eo as STAT_TEST_METHOD,
408
- Ne as SUBSET_FILTER_KEY,
409
- Fe as SYMMETRIC_RANGE_KEY,
419
+ Ye as SUBSET_FILTER_KEY,
420
+ je as SYMMETRIC_RANGE_KEY,
410
421
  we as THRESHOLDS_KEY,
411
- je as UPPER_LIMIT_KEY,
422
+ Re as UPPER_LIMIT_KEY,
412
423
  Ze as getInitialAxesSettings,
413
424
  Qe as getInitialLayersSettings,
414
425
  Xe as getInitialStatisticsState,
415
- ke as getInitialTemplate,
426
+ Ne as getInitialTemplate,
416
427
  qe as isContinuousDataMapping,
417
428
  Je as isMappedAes,
418
429
  We as isNumberRange
package/dist/GraphMaker/constantsCommon.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"constantsCommon.js","sources":["../../src/GraphMaker/constantsCommon.ts"],"sourcesContent":["import type { ChartType } from '@milaboratories/pf-plots';\nimport type { Component } from 'vue';\nimport {\n DotShape,\n LineType\n} from './components/AesSettings/types';\nimport {\n DEFAULT_BLACK,\n DEFAULT_DOT_SHAPE,\n DEFAULT_LINE_TYPE\n} from './constantsAesthetic';\nimport { DEFAULT_DOT_SIZE, DEFAULT_LINE_COLOR } from './dataBindAes';\nimport BarAndErrorIcon from './icons/BarAndErrorIcon.vue';\nimport BarAndLineIcon from './icons/BarAndLineIcon.vue';\nimport BarIcon from './icons/BarIcon.vue';\nimport BinnedDotsIcon from './icons/BinnedDotsIcon.vue';\nimport BoxplotAndBinnedIcon from './icons/BoxplotAndBinnedIcon.vue';\nimport BoxplotAndJitterIcon from './icons/BoxplotAndJitterIcon.vue';\nimport BoxplotIcon from './icons/BoxplotIcon.vue';\nimport DendroIcon from './icons/DendroIcon.vue';\nimport HeatmapIcon from './icons/HeatmapIcon.vue';\nimport JitteredDotsIcon from './icons/JitteredDotsIcon.vue';\nimport LineAndBinnedIcon from './icons/LineAndBinnedIcon.vue';\nimport LineAndErrorbarIcon from './icons/LineAndErrorbarIcon.vue';\nimport LineAndJitterIcon from './icons/LineAndJitterIcon.vue';\nimport LineIcon from './icons/LineIcon.vue';\nimport LogoIcon from './icons/LogoIcon.vue';\nimport ScatterplotIcon from './icons/ScatterplotIcon.vue';\nimport SinaIcon from './icons/SinaIcon.vue';\nimport StackedBarIcon from './icons/StackedBarIcon.vue';\nimport ViolinAndBinnedIcon from './icons/ViolinAndBinnedIcon.vue';\nimport ViolinAndJitterIcon from './icons/ViolinAndJitterIcon.vue';\nimport ViolinIcon from './icons/ViolinIcon.vue';\nimport {\n AxisTitleMode,\n DeepPartial,\n DiscreteLayer,\n DiscreteLayersTemplate,\n Frame,\n HeatmapFrame, HeatmapLayer, HeatmapLayerTemplate, HistogramLayer, HistogramLayerTemplate,\n LabelsPosition,\n LabelsRotation,\n Layer,\n LayersTemplate,\n Scale,\n ScatterplotLayer,\n ScatterplotLayersTemplate,\n TitlePosition\n} from './types';\n\nexport const DEFAULT_CHART_TYPE: ChartType = 'discrete';\n\n/** Annotations keys */\nexport const THRESHOLDS_KEY = 'pl7.app/graph/thresholds';\nexport const LOWER_LIMIT_KEY = 'pl7.app/graph/axis/lowerLimit';\nexport const UPPER_LIMIT_KEY = 'pl7.app/graph/axis/upperLimit';\nexport const SYMMETRIC_RANGE_KEY = 'pl7.app/graph/axis/symmetricRange';\nexport const PALETTE_KEY = 'pl7.app/graph/palette';\nexport const AXIS_NATURE_KEY = 'pl7.app/axisNature';\nexport const COLUMN_MIN_KEY = 'pl7.app/min';\nexport const COLUMN_MAX_KEY = 'pl7.app/max';\nexport const SUBSET_FILTER_KEY = 'pl7.app/isSubset';\n\nexport function getInitialTemplate(\n restoredTemplate: LayersTemplate | null,\n chartType: ChartType\n) {\n if (chartType === 'discrete') {\n return restoredTemplate &&\n DISCRETE_TEMPLATES_MAP[restoredTemplate as DiscreteLayersTemplate]\n ? restoredTemplate\n : 'box';\n }\n if (chartType === 'scatterplot' || chartType === 'scatterplot-umap') {\n return restoredTemplate &&\n SCATTERPLOT_TEMPLATES_MAP[restoredTemplate as ScatterplotLayersTemplate]\n ? restoredTemplate\n : 'dots';\n }\n if (chartType === 'dendro') {\n return 'dendro';\n }\n return restoredTemplate ?? 'heatmap';\n}\n\nexport const DISCRETE_TEMPLATES_MAP: Record<\n DiscreteLayersTemplate,\n DiscreteLayer[]\n> = {\n box: ['box'],\n box_binnedDots: ['box', 'binnedDots'],\n box_jitteredDots: ['box', 'jitteredDots'],\n violin: ['violin'],\n violin_binnedDots: ['violin', 'binnedDots'],\n violin_jitteredDots: ['violin', 'jitteredDots'],\n binnedDots: ['binnedDots'],\n jitteredDots: ['jitteredDots'],\n bar: ['bar'],\n bar_line: ['bar', 'line'],\n bar_errorbar: ['bar', 'errorbar'],\n stackedBar: ['stackedBar'],\n line: ['line'],\n line_jitteredDots: ['line', 'jitteredDots'],\n line_binnedDots: ['line', 'binnedDots'],\n line_errorbar: ['line', 'errorbar'],\n errorbar: ['errorbar'],\n sina: ['sina'],\n logo: ['logo']\n};\n\nexport const SCATTERPLOT_TEMPLATES_MAP: Record<\n ScatterplotLayersTemplate,\n ScatterplotLayer[]\n> = {\n dots: ['dots'],\n curve: ['curve'],\n curve_dots: ['curve', 'dots']\n};\n\nexport const SCATTERPLOT_UMAP_TEMPLATES_MAP: Partial<Record<\n ScatterplotLayersTemplate,\n ScatterplotLayer[]\n>> = {\n dots: ['dots'],\n curve_dots: ['curve', 'dots']\n};\n\nexport const HEATMAP_TEMPLATES_MAP: Record<HeatmapLayerTemplate, HeatmapLayer[]> = {\n heatmap: ['heatmap'],\n heatmapClustered: ['heatmapClustered']\n};\nexport const HISTOGRAM_TEMPLATES_MAP: Record<HistogramLayerTemplate, HistogramLayer[]> = {\n bins: ['bins']\n}\nexport const LAYER_TITLES: Record<Layer, string> = {\n box: 'Boxplot',\n binnedDots: 'Binned Dots',\n jitteredDots: 'Jittered Dots',\n violin: 'Violins',\n bar: 'Bar',\n stackedBar: 'Stacked Bar',\n line: 'Line',\n errorbar: 'Error Bar',\n sina: 'Sina',\n logo: 'Logo Plot',\n dots: 'Scatter Plot',\n curve: 'Curve',\n heatmap: 'Heatmap',\n heatmapClustered: 'Heatmap + Dendro',\n dendro: 'Dendrogram',\n bins: 'Histogram',\n bubble: 'Bubble plot'\n};\n\nexport type DiscreteStatisticsState = {\n overall: {\n data: { testMethod: null | string };\n validity: { testMethod: boolean };\n };\n referenceGroup: {\n data: {\n testMethod: null | string;\n referenceGroup: null | string;\n correctionMethod: string;\n format: 'significance' | 'pValue';\n ns: boolean;\n };\n validity: {\n testMethod: boolean;\n referenceGroup: boolean;\n };\n };\n pairwise: {\n data: {\n testMethod: null | string;\n correctionMethod: string;\n format: 'significance' | 'pValue';\n ns: boolean;\n };\n validity: { testMethod: boolean };\n };\n};\n\nexport type ScatterplotStatisticsState = {\n trend: {\n on: boolean,\n trim: boolean,\n showLegend: boolean\n },\n}\n\nexport type StatisticsState = DiscreteStatisticsState | ScatterplotStatisticsState;\n\nexport function getInitialStatisticsState(chartType: ChartType, initialData?: DeepPartial<StatisticsState>): StatisticsState {\n if (chartType === 'discrete') {\n const initial = initialData as DiscreteStatisticsState;\n return {\n overall: {\n data: { testMethod: initial?.overall?.data?.testMethod ?? null },\n validity: { testMethod: initial?.overall?.validity?.testMethod ?? true }\n },\n referenceGroup: {\n data: {\n testMethod: initial?.referenceGroup?.data?.testMethod ?? null,\n referenceGroup: initial?.referenceGroup?.data?.referenceGroup ?? null,\n correctionMethod: initial?.referenceGroup?.data?.correctionMethod ?? 'Bonferroni',\n format: initial?.referenceGroup?.data?.format ?? 'significance',\n ns: initial?.referenceGroup?.data?.ns ?? false\n },\n validity: {\n testMethod: initial?.referenceGroup?.validity?.testMethod ?? true,\n referenceGroup: initial?.referenceGroup?.validity?.referenceGroup ?? true\n }\n },\n pairwise: {\n data: {\n testMethod: initial?.pairwise?.data?.testMethod ?? null,\n correctionMethod: initial?.pairwise?.data?.correctionMethod ?? 'Bonferroni',\n format: initial?.pairwise?.data?.format ?? 'significance',\n ns: initial?.pairwise?.data?.ns ?? false\n },\n validity: { testMethod: initial?.pairwise?.validity?.testMethod ?? true }\n }\n } as DiscreteStatisticsState;\n }\n const initial = initialData as ScatterplotStatisticsState;\n return {\n trend: {\n on: initial?.trend?.on ?? false,\n trim: initial?.trend?.trim ?? false,\n showLegend: initial?.trend?.showLegend ?? true\n }\n };\n}\n\nexport type NumberRange = { min: number, max: number }\nexport type MappingLink = { type: string, value?: string }; // {type: 'primaryGrouping'} for example\nexport type ColorAes = string | MappingLink;\nexport type DotShapeAes = DotShape | MappingLink;\nexport type DotSizeAes = number | NumberRange;\nexport type LineTypeAes = LineType | MappingLink;\nexport type FixedOrMappedAes = ColorAes | DotShapeAes | LineTypeAes;\n\nexport type ContinuousDataMappingSize = {\n column: string,\n range: NumberRange\n}\n\nexport type ContinuousDataMappingForGraph<T extends string | number> = {columnName: ColumnNameSchema, domain: number[], range: T[], type: 'linear' | 'log'}\n\nexport type ColumnNameSchema = {\n type: 'column'\n value: string,\n label?: string\n valueLabels?: string\n}\n\nexport function isNumberRange(v: number | NumberRange | null | undefined): v is NumberRange {\n return typeof v !== 'undefined' && v !== null && typeof v === 'object' && 'min' in v && 'max' in v;\n}\n\nexport function isMappedAes(\n item: FixedOrMappedAes | null | string | number | boolean | unknown\n): item is MappingLink {\n return typeof item === 'object' && item !== null && 'type' in item;\n}\n\nexport function isContinuousDataMapping(v: ContinuousDataMappingSize | MappingLink | number | string | null | undefined): v is ContinuousDataMappingSize {\n return typeof v !== 'undefined' && v !== null && typeof v === 'object' && 'range' in v;\n}\n\nexport type LayersSettings = {\n //bubble\n bubble: {\n NAValueAs: number | null,\n minRadius: number,\n maxRadius: number,\n normalizationDirection: 'row' | 'column' | null,\n normalizationMethod: 'standardScaling' | 'meanNormalization',\n strokeColor: null | string\n },\n // histogram\n bins: {\n fillColor: ColorAes | null,\n opacity: number\n },\n //dendrogram\n dendro: {\n dotFill: ColorAes,\n dotShape: DotShapeAes,\n dotSize: DotSizeAes,\n lineColor: ColorAes,\n mode: 'normal' | 'useAllNodesAsLeaves',\n leavesMode: 'normal' | 'alignLeavesToLine',\n showTable: boolean,\n showLegend: boolean,\n },\n //heatmap\n heatmap: {\n NAValueAs: number | null,\n normalizationDirection: 'row' | 'column' | null,\n normalizationMethod: 'standardScaling' | 'meanNormalization',\n },\n heatmapClustered: {\n NAValueAs: number | null,\n normalizationDirection: 'row' | 'column' | null,\n normalizationMethod: 'standardScaling' | 'meanNormalization',\n dendrogramX: boolean,\n dendrogramY: boolean,\n disableClusteringX: boolean,\n disableClusteringY: boolean,\n },\n //scatterplot\n dots: {\n dotFill: ColorAes | null,\n dotShape: DotShapeAes | null,\n dotSize: ContinuousDataMappingSize | number | null\n },\n curve: {\n smoothing: boolean,\n lineColor: ColorAes\n },\n //discrete\n box: {\n showOutliers: boolean,\n fillColor: ColorAes | null,\n lineColor: ColorAes,\n dotShape: DotShapeAes,\n lineType: LineTypeAes,\n gapWidth: number,\n opacity: number,\n stat: {\n low: number,\n middle: number,\n upper: number,\n k: number,\n },\n },\n binnedDots: {\n fillColor: ColorAes | null,\n lineColor: ColorAes,\n opacity: number,\n showOutliers: boolean,\n },\n jitteredDots: {\n dotFill: ColorAes | null,\n dotShape: DotShapeAes,\n lineColor: ColorAes,\n opacity: number,\n showOutliers: boolean,\n },\n violin: {\n fillColor: ColorAes | null,\n lineColor: ColorAes,\n lineType: LineTypeAes,\n opacity: number,\n trim: boolean,\n showQuartiles: boolean,\n quartilesLineStyle: LineType,\n medianLineStyle: LineType\n },\n bar: {\n fillColor: ColorAes | null,\n lineColor: ColorAes,\n opacity: number,\n height: 'max' | 'mean' | 'median',\n },\n stackedBar: {\n 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middle: 0.5,\n upper: 0.75,\n k: 1.5\n }\n },\n binnedDots: {\n fillColor: null as ColorAes | null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n showOutliers: true\n },\n jitteredDots: {\n dotFill: null as ColorAes | null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n showOutliers: true\n },\n violin: {\n fillColor: null as ColorAes | null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n opacity: 1,\n trim: false,\n showQuartiles: false,\n quartilesLineStyle: 'dashed',\n medianLineStyle: 'solid'\n },\n bar: {\n fillColor: null as ColorAes | null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n height: 'max'\n },\n stackedBar: {\n fillColor: null as ColorAes | null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n normalize: false\n },\n line: {\n pointsValues: 'mean',\n lineColor: null as ColorAes | null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n dotFill: null as ColorAes | null,\n opacity: 1\n },\n errorbar: {\n pointsValues: 'mean',\n interval: 'sd',\n lineColor: null as ColorAes | null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n dotFill: null as ColorAes | null,\n opacity: 1\n },\n sina: {\n dotFill: null as ColorAes | null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n opacity: 1,\n showOutliers: true\n },\n logo: {\n normalize: false,\n opacity: 1\n }\n});\n\nexport function getDefaultLayersSettings() {\n return DEFAULT_LAYERS_SETTINGS();\n}\n\nconst DISCRETE_LAYERS: Layer[] = [\n 'box',\n 'binnedDots',\n 'jitteredDots',\n 'violin',\n 'bar',\n 'stackedBar',\n 'line',\n 'errorbar',\n 'sina',\n 'logo'\n];\nconst SCATTERPLOT_LAYERS: Layer[] = ['dots', 'curve'];\nconst SCATTERPLOT_UMAP_LAYERS: Layer[] = ['dots'];\nconst HEATMAP_LAYERS: Layer[] = ['heatmap', 'heatmapClustered'];\nconst DENDRO_LAYERS: Layer[] = ['dendro'];\nconst HISTOGRAM_LAYERS: Layer[] = ['bins'];\nconst BUBBLE_LAYERS: Layer[] = ['bubble'];\nconst LAYERS_BY_CHART_TYPE: Record<ChartType, Layer[]> = {\n discrete: DISCRETE_LAYERS,\n scatterplot: SCATTERPLOT_LAYERS,\n 'scatterplot-umap': SCATTERPLOT_UMAP_LAYERS,\n heatmap: HEATMAP_LAYERS,\n dendro: DENDRO_LAYERS,\n histogram: HISTOGRAM_LAYERS,\n bubble: BUBBLE_LAYERS\n};\n\nexport function getInitialLayersSettings(\n initialSettings?: DeepPartial<LayersSettings>\n): LayersSettings {\n const defaultSettings = DEFAULT_LAYERS_SETTINGS();\n const layers: Layer[] = Object.keys(defaultSettings) as Layer[];\n return layers.reduce((res, layer) => {\n Object.assign(\n res[layer],\n initialSettings?.[layer] ?? {}\n );\n return res;\n }, defaultSettings);\n}\n\nexport type Sorting = 'asc' | 'desc';\nexport type AxesState = {\n title: { value: string; position: TitlePosition; mode: AxisTitleMode; facetTitleFrame: Frame };\n axisX: {\n labelsPosition: LabelsPosition; // for heatmap - top/bottom/left/right/hidden\n labelsRotation: LabelsRotation | null; // only for discrete X axis - 'center'/'90deg'/'45deg'; null for auto mode before user chose\n axisLabelsAngle: 0 | 45 | 90; // for heatmap\n groupLabelsAngle: 0 | 45 | 90; // for heatmap\n titleMode: AxisTitleMode; // 'auto' - from column or 'custom' - from 'customTitle' field or 'hidden'\n customTitle: string; // user axis title, not default from column\n gridlines: boolean;\n linesBetweenCategories: boolean; // for discrete - position for vertical gridlines\n ticks: boolean;\n scale: Scale; // linear or log\n significantLinesStyle: LineType;\n sorting: Sorting;\n allowNullPrimaryGroups: boolean; // for discrete - allow group with null grouping value\n allowNullSecondaryGroups: boolean;\n };\n axisY: {\n titleMode: AxisTitleMode;\n customTitle: string;\n axisLabelsAngle: 0 | 45 | 90; // for heatmap\n groupLabelsAngle: 0 | 45 | 90; // for heatmap\n gridlines: boolean;\n ticks: boolean;\n scale: Scale;\n significantLinesStyle: LineType;\n sorting: Sorting;\n };\n legend: {};\n other: {\n frame: Frame | HeatmapFrame;\n reverse: boolean;\n facetSharedBy: 'x' | 'y' | 'xy' | 'none';\n facetColumns: number;\n binsCount: number;\n groupingDirection: 'straight' | 'reverse';\n groupingStack: 'vertical' | 'horizontal';\n };\n};\n\nconst DEFAULT_AXES: () => AxesState = () => ({\n title: {\n value: 'Graph 1',\n position: 'center',\n mode: 'auto',\n facetTitleFrame: 'full'\n },\n axisX: {\n labelsPosition: 'bottom',\n labelsRotation: null,\n axisLabelsAngle: 90,\n groupLabelsAngle: 45,\n titleMode: 'auto',\n customTitle: '',\n gridlines: true,\n linesBetweenCategories: true,\n ticks: true,\n scale: 'linear',\n significantLinesStyle: 'dashed',\n sorting: 'asc',\n allowNullPrimaryGroups: false,\n allowNullSecondaryGroups: false\n },\n axisY: {\n titleMode: 'auto',\n customTitle: '',\n axisLabelsAngle: 90,\n groupLabelsAngle: 45,\n gridlines: true,\n ticks: true,\n scale: 'linear',\n significantLinesStyle: 'dashed',\n sorting: 'asc'\n },\n legend: {},\n other: {\n frame: 'full',\n reverse: false,\n facetSharedBy: 'xy',\n facetColumns: 3,\n binsCount: 10,\n groupingDirection: 'straight',\n groupingStack: 'vertical'\n }\n});\n\nfunction isHeatmapFrame(frame: Frame | HeatmapFrame): frame is HeatmapFrame {\n return frame === 'full' || frame === 'none';\n}\n\nexport function getInitialAxesSettings(\n chartType: ChartType,\n initialAxesSettings?: DeepPartial<AxesState>\n): AxesState {\n const defaultAxes = DEFAULT_AXES();\n if (!initialAxesSettings) {\n return defaultAxes;\n }\n\n // TODO: divide into separated settings for chart types\n function getFrame(frame?: Frame | HeatmapFrame): Frame | HeatmapFrame {\n if (!frame) {\n return 'full';\n }\n if (chartType === 'heatmap' && !isHeatmapFrame(frame)) {\n return 'full' as HeatmapFrame;\n }\n if (chartType !== 'heatmap' && isHeatmapFrame(frame)) {\n return frame === 'none' ? 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'heatmap';\n}\n\nexport const DISCRETE_TEMPLATES_MAP: Record<\n DiscreteLayersTemplate,\n DiscreteLayer[]\n> = {\n box: ['box'],\n box_binnedDots: ['box', 'binnedDots'],\n box_jitteredDots: ['box', 'jitteredDots'],\n violin: ['violin'],\n violin_binnedDots: ['violin', 'binnedDots'],\n violin_jitteredDots: ['violin', 'jitteredDots'],\n binnedDots: ['binnedDots'],\n jitteredDots: ['jitteredDots'],\n bar: ['bar'],\n bar_line: ['bar', 'line'],\n bar_errorbar: ['bar', 'errorbar'],\n stackedBar: ['stackedBar'],\n stackedArea: ['stackedArea'],\n line: ['line'],\n line_jitteredDots: ['line', 'jitteredDots'],\n line_binnedDots: ['line', 'binnedDots'],\n line_errorbar: ['line', 'errorbar'],\n errorbar: ['errorbar'],\n sina: ['sina'],\n logo: ['logo']\n};\n\nexport const SCATTERPLOT_TEMPLATES_MAP: Record<\n ScatterplotLayersTemplate,\n ScatterplotLayer[]\n> = {\n dots: ['dots'],\n curve: ['curve'],\n curve_dots: ['curve', 'dots']\n};\n\nexport const SCATTERPLOT_UMAP_TEMPLATES_MAP: Partial<Record<\n ScatterplotLayersTemplate,\n ScatterplotLayer[]\n>> = {\n dots: ['dots'],\n curve_dots: ['curve', 'dots']\n};\n\nexport const HEATMAP_TEMPLATES_MAP: Record<HeatmapLayerTemplate, HeatmapLayer[]> = {\n heatmap: ['heatmap'],\n heatmapClustered: ['heatmapClustered']\n};\nexport const HISTOGRAM_TEMPLATES_MAP: Record<HistogramLayerTemplate, HistogramLayer[]> = {\n bins: ['bins']\n}\nexport const LAYER_TITLES: Record<Layer, string> = {\n box: 'Boxplot',\n binnedDots: 'Binned Dots',\n jitteredDots: 'Jittered Dots',\n violin: 'Violins',\n bar: 'Bar',\n stackedBar: 'Stacked Bar',\n stackedArea: 'Stacked Bar + Stream Area',\n line: 'Line',\n errorbar: 'Error Bar',\n sina: 'Sina',\n logo: 'Logo Plot',\n dots: 'Scatter Plot',\n curve: 'Curve',\n heatmap: 'Heatmap',\n heatmapClustered: 'Heatmap + Dendro',\n dendro: 'Dendrogram',\n bins: 'Histogram',\n bubble: 'Bubble plot'\n};\n\nexport type DiscreteStatisticsState = {\n overall: {\n data: { testMethod: null | string };\n validity: { testMethod: boolean };\n };\n referenceGroup: {\n data: {\n testMethod: null | string;\n referenceGroup: null | string;\n correctionMethod: string;\n format: 'significance' | 'pValue';\n ns: boolean;\n };\n validity: {\n testMethod: boolean;\n referenceGroup: boolean;\n };\n };\n pairwise: {\n data: {\n testMethod: null | string;\n correctionMethod: string;\n format: 'significance' | 'pValue';\n ns: boolean;\n };\n validity: { testMethod: boolean };\n };\n};\n\nexport type ScatterplotStatisticsState = {\n trend: {\n on: boolean,\n trim: boolean,\n showLegend: boolean\n },\n}\n\nexport type StatisticsState = DiscreteStatisticsState | ScatterplotStatisticsState;\n\nexport function getInitialStatisticsState(chartType: ChartType, initialData?: DeepPartial<StatisticsState>): StatisticsState {\n if (chartType === 'discrete') {\n const initial = initialData as DiscreteStatisticsState;\n return {\n overall: {\n data: { testMethod: initial?.overall?.data?.testMethod ?? null },\n validity: { testMethod: initial?.overall?.validity?.testMethod ?? true }\n },\n referenceGroup: {\n data: {\n testMethod: initial?.referenceGroup?.data?.testMethod ?? null,\n referenceGroup: initial?.referenceGroup?.data?.referenceGroup ?? null,\n correctionMethod: initial?.referenceGroup?.data?.correctionMethod ?? 'Bonferroni',\n format: initial?.referenceGroup?.data?.format ?? 'significance',\n ns: initial?.referenceGroup?.data?.ns ?? false\n },\n validity: {\n testMethod: initial?.referenceGroup?.validity?.testMethod ?? true,\n referenceGroup: initial?.referenceGroup?.validity?.referenceGroup ?? true\n }\n },\n pairwise: {\n data: {\n testMethod: initial?.pairwise?.data?.testMethod ?? null,\n correctionMethod: initial?.pairwise?.data?.correctionMethod ?? 'Bonferroni',\n format: initial?.pairwise?.data?.format ?? 'significance',\n ns: initial?.pairwise?.data?.ns ?? false\n },\n validity: { testMethod: initial?.pairwise?.validity?.testMethod ?? true }\n }\n } as DiscreteStatisticsState;\n }\n const initial = initialData as ScatterplotStatisticsState;\n return {\n trend: {\n on: initial?.trend?.on ?? false,\n trim: initial?.trend?.trim ?? false,\n showLegend: initial?.trend?.showLegend ?? true\n }\n };\n}\n\nexport type NumberRange = { min: number, max: number }\nexport type MappingLink = { type: string, value?: string }; // {type: 'primaryGrouping'} for example\nexport type ColorAes = string | MappingLink;\nexport type DotShapeAes = DotShape | MappingLink;\nexport type DotSizeAes = number | NumberRange;\nexport type LineTypeAes = LineType | MappingLink;\nexport type FixedOrMappedAes = ColorAes | DotShapeAes | LineTypeAes;\n\nexport type ContinuousDataMappingSize = {\n column: string,\n range: NumberRange\n}\n\nexport type ContinuousDataMappingForGraph<T extends string | number> = {columnName: ColumnNameSchema, domain: number[], range: T[], type: 'linear' | 'log'}\n\nexport type ColumnNameSchema = {\n type: 'column'\n value: string,\n label?: string\n valueLabels?: string\n}\n\nexport function isNumberRange(v: number | NumberRange | null | undefined): v is NumberRange {\n return typeof v !== 'undefined' && v !== null && typeof v === 'object' && 'min' in v && 'max' in v;\n}\n\nexport function isMappedAes(\n item: FixedOrMappedAes | null | string | number | boolean | unknown\n): item is MappingLink {\n return typeof item === 'object' && item !== null && 'type' in item;\n}\n\nexport function isContinuousDataMapping(v: ContinuousDataMappingSize | MappingLink | number | string | null | undefined): v is ContinuousDataMappingSize {\n return typeof v !== 'undefined' && v !== null && typeof v === 'object' && 'range' in v;\n}\n\nexport type LayersSettings = {\n //bubble\n bubble: {\n NAValueAs: number | null,\n minRadius: number,\n maxRadius: number,\n normalizationDirection: 'row' | 'column' | null,\n normalizationMethod: 'standardScaling' | 'meanNormalization',\n strokeColor: null | string\n },\n // histogram\n bins: {\n fillColor: ColorAes | null,\n opacity: number\n },\n //dendrogram\n dendro: {\n dotFill: ColorAes,\n dotShape: DotShapeAes,\n dotSize: DotSizeAes,\n lineColor: ColorAes,\n mode: 'normal' | 'useAllNodesAsLeaves',\n leavesMode: 'normal' | 'alignLeavesToLine',\n showTable: boolean,\n showLegend: boolean,\n },\n //heatmap\n heatmap: {\n NAValueAs: number | null,\n normalizationDirection: 'row' | 'column' | null,\n normalizationMethod: 'standardScaling' | 'meanNormalization',\n },\n heatmapClustered: {\n NAValueAs: number | null,\n normalizationDirection: 'row' | 'column' | null,\n normalizationMethod: 'standardScaling' | 'meanNormalization',\n dendrogramX: boolean,\n dendrogramY: boolean,\n disableClusteringX: boolean,\n disableClusteringY: boolean,\n },\n //scatterplot\n dots: {\n dotFill: ColorAes | null,\n dotShape: DotShapeAes | null,\n dotSize: ContinuousDataMappingSize | number | null\n },\n curve: {\n smoothing: boolean,\n lineColor: ColorAes\n },\n //discrete\n box: {\n showOutliers: boolean,\n fillColor: ColorAes | null,\n lineColor: ColorAes,\n dotShape: DotShapeAes,\n lineType: LineTypeAes,\n gapWidth: number,\n opacity: number,\n stat: {\n low: number,\n middle: number,\n upper: number,\n k: number,\n },\n },\n binnedDots: {\n fillColor: ColorAes | null,\n lineColor: ColorAes,\n opacity: number,\n showOutliers: boolean,\n },\n jitteredDots: {\n dotFill: ColorAes | null,\n dotShape: DotShapeAes,\n lineColor: ColorAes,\n opacity: number,\n showOutliers: boolean,\n },\n violin: {\n fillColor: ColorAes | null,\n lineColor: ColorAes,\n lineType: LineTypeAes,\n opacity: number,\n trim: boolean,\n showQuartiles: boolean,\n quartilesLineStyle: LineType,\n medianLineStyle: LineType\n },\n bar: {\n fillColor: ColorAes | null,\n lineColor: ColorAes,\n opacity: number,\n height: 'max' | 'mean' | 'median',\n },\n stackedBar: {\n fillColor: ColorAes | null,\n lineColor: ColorAes,\n opacity: number,\n normalize: boolean\n },\n stackedArea: {\n fillColor: ColorAes | null,\n lineColor: ColorAes,\n barsOpacity: number,\n areaOpacity: number,\n normalize: boolean,\n showBars: boolean\n },\n line: {\n pointsValues: 'mean' | 'median',\n lineColor: ColorAes | null,\n dotShape: DotShapeAes,\n lineType: LineTypeAes,\n dotFill: ColorAes | null,\n opacity: number,\n },\n errorbar: {\n pointsValues: 'mean' | 'median',\n interval: 'sd' | 'se' | '',\n lineColor: ColorAes | null,\n dotShape: DotShapeAes,\n dotFill: ColorAes | null,\n opacity: number,\n },\n sina: {\n dotFill: ColorAes | null,\n dotShape: DotShapeAes,\n opacity: number,\n showOutliers: boolean,\n },\n logo: {\n normalize: boolean,\n opacity: number,\n }\n};\nexport const DEFAULT_LAYERS_SETTINGS: () => LayersSettings = () => ({\n //bubble\n bubble: {\n NAValueAs: 0,\n strokeColor: null,\n minRadius: 3,\n maxRadius: 38,\n normalizationDirection: 'row',\n normalizationMethod: 'standardScaling',\n },\n // histogram\n bins: {\n fillColor: null,\n opacity: 1\n },\n //dendro\n dendro: {\n dotFill: DEFAULT_BLACK,\n dotShape: DEFAULT_DOT_SHAPE,\n dotSize: DEFAULT_DOT_SIZE,\n lineColor: DEFAULT_BLACK,\n mode: 'normal',\n leavesMode: 'normal',\n showTable: false,\n showLegend: true\n },\n //heatmap\n heatmap: {\n NAValueAs: 0,\n normalizationDirection: 'row',\n normalizationMethod: 'standardScaling',\n },\n heatmapClustered: {\n NAValueAs: 0,\n normalizationDirection: 'row',\n normalizationMethod: 'standardScaling',\n dendrogramX: true,\n dendrogramY: true,\n disableClusteringX: false,\n disableClusteringY: false\n },\n //scatterplot\n dots: {\n dotFill: null as ColorAes | null,\n dotShape: null as DotShapeAes | null,\n dotSize: null as ContinuousDataMappingSize | number | null\n },\n curve: { lineColor: DEFAULT_BLACK, smoothing: true },\n //discrete\n box: {\n showOutliers: true,\n fillColor: null as ColorAes | null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n gapWidth: 0.2,\n opacity: 1,\n stat: {\n low: 0.25,\n middle: 0.5,\n upper: 0.75,\n k: 1.5\n }\n },\n binnedDots: {\n fillColor: null as ColorAes | null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n showOutliers: true\n },\n jitteredDots: {\n dotFill: null as ColorAes | null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n showOutliers: true\n },\n violin: {\n fillColor: null as ColorAes | null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n opacity: 1,\n trim: false,\n showQuartiles: false,\n quartilesLineStyle: 'dashed',\n medianLineStyle: 'solid'\n },\n bar: {\n fillColor: null as ColorAes | null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n height: 'max'\n },\n stackedBar: {\n fillColor: null as ColorAes | null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n opacity: 1,\n normalize: false\n },\n stackedArea: {\n fillColor: null as ColorAes | null,\n lineColor: DEFAULT_LINE_COLOR as ColorAes,\n barsOpacity: 1,\n areaOpacity: 0.7,\n normalize: false,\n showBars: true\n },\n line: {\n pointsValues: 'mean',\n lineColor: null as ColorAes | null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n lineType: DEFAULT_LINE_TYPE as LineTypeAes,\n dotFill: null as ColorAes | null,\n opacity: 1\n },\n errorbar: {\n pointsValues: 'mean',\n interval: 'sd',\n lineColor: null as ColorAes | null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n dotFill: null as ColorAes | null,\n opacity: 1\n },\n sina: {\n dotFill: null as ColorAes | null,\n dotShape: DEFAULT_DOT_SHAPE as DotShapeAes,\n opacity: 1,\n showOutliers: true\n },\n logo: {\n normalize: false,\n opacity: 1\n }\n});\n\nexport function getDefaultLayersSettings() {\n return DEFAULT_LAYERS_SETTINGS();\n}\n\nconst DISCRETE_LAYERS: Layer[] = [\n 'box',\n 'binnedDots',\n 'jitteredDots',\n 'violin',\n 'bar',\n 'stackedBar',\n 'line',\n 'errorbar',\n 'sina',\n 'logo'\n];\nconst SCATTERPLOT_LAYERS: Layer[] = ['dots', 'curve'];\nconst SCATTERPLOT_UMAP_LAYERS: Layer[] = ['dots'];\nconst HEATMAP_LAYERS: Layer[] = ['heatmap', 'heatmapClustered'];\nconst DENDRO_LAYERS: Layer[] = ['dendro'];\nconst HISTOGRAM_LAYERS: Layer[] = ['bins'];\nconst BUBBLE_LAYERS: Layer[] = ['bubble'];\nconst LAYERS_BY_CHART_TYPE: Record<ChartType, Layer[]> = {\n discrete: DISCRETE_LAYERS,\n scatterplot: SCATTERPLOT_LAYERS,\n 'scatterplot-umap': SCATTERPLOT_UMAP_LAYERS,\n heatmap: HEATMAP_LAYERS,\n dendro: DENDRO_LAYERS,\n histogram: HISTOGRAM_LAYERS,\n bubble: BUBBLE_LAYERS\n};\n\nexport function getInitialLayersSettings(\n initialSettings?: DeepPartial<LayersSettings>\n): LayersSettings {\n const defaultSettings = DEFAULT_LAYERS_SETTINGS();\n const layers: Layer[] = Object.keys(defaultSettings) as Layer[];\n return layers.reduce((res, layer) => {\n Object.assign(\n res[layer],\n initialSettings?.[layer] ?? {}\n );\n return res;\n }, defaultSettings);\n}\n\nexport type Sorting = 'asc' | 'desc';\nexport type AxesState = {\n title: { value: string; position: TitlePosition; mode: AxisTitleMode; facetTitleFrame: Frame };\n axisX: {\n labelsPosition: LabelsPosition; // for heatmap - top/bottom/left/right/hidden\n labelsRotation: LabelsRotation | null; // only for discrete X axis - 'center'/'90deg'/'45deg'; null for auto mode before user chose\n axisLabelsAngle: 0 | 45 | 90; // for heatmap\n groupLabelsAngle: 0 | 45 | 90; // for heatmap\n titleMode: AxisTitleMode; // 'auto' - from column or 'custom' - from 'customTitle' field or 'hidden'\n customTitle: string; // user axis title, not default from column\n gridlines: boolean;\n linesBetweenCategories: boolean; // for discrete - position for vertical gridlines\n ticks: boolean;\n scale: Scale; // linear or log\n significantLinesStyle: LineType;\n sorting: Sorting;\n allowNullPrimaryGroups: boolean; // for discrete - allow group with null grouping value\n allowNullSecondaryGroups: boolean;\n };\n axisY: {\n titleMode: AxisTitleMode;\n customTitle: string;\n axisLabelsAngle: 0 | 45 | 90; // for heatmap\n groupLabelsAngle: 0 | 45 | 90; // for heatmap\n gridlines: boolean;\n ticks: boolean;\n scale: Scale;\n significantLinesStyle: LineType;\n sorting: Sorting;\n };\n legend: {};\n other: {\n frame: Frame | HeatmapFrame;\n reverse: boolean;\n facetSharedBy: 'x' | 'y' | 'xy' | 'none';\n facetColumns: number;\n binsCount: number;\n groupingDirection: 'straight' | 'reverse';\n groupingStack: 'vertical' | 'horizontal';\n };\n};\n\nconst DEFAULT_AXES: () => AxesState = () => ({\n title: {\n value: 'Graph 1',\n position: 'center',\n mode: 'auto',\n facetTitleFrame: 'full'\n },\n axisX: {\n labelsPosition: 'bottom',\n labelsRotation: null,\n axisLabelsAngle: 90,\n groupLabelsAngle: 45,\n titleMode: 'auto',\n customTitle: '',\n gridlines: true,\n linesBetweenCategories: true,\n ticks: true,\n scale: 'linear',\n significantLinesStyle: 'dashed',\n sorting: 'asc',\n allowNullPrimaryGroups: false,\n allowNullSecondaryGroups: false\n },\n axisY: {\n titleMode: 'auto',\n customTitle: '',\n axisLabelsAngle: 90,\n groupLabelsAngle: 45,\n gridlines: true,\n ticks: true,\n scale: 'linear',\n significantLinesStyle: 'dashed',\n sorting: 'asc'\n },\n legend: {},\n other: {\n frame: 'full',\n reverse: false,\n facetSharedBy: 'xy',\n facetColumns: 3,\n binsCount: 10,\n groupingDirection: 'straight',\n groupingStack: 'vertical'\n }\n});\n\nfunction isHeatmapFrame(frame: Frame | HeatmapFrame): frame is HeatmapFrame {\n return frame === 'full' || frame === 'none';\n}\n\nexport function getInitialAxesSettings(\n chartType: ChartType,\n initialAxesSettings?: DeepPartial<AxesState>\n): AxesState {\n const defaultAxes = DEFAULT_AXES();\n if (!initialAxesSettings) {\n return defaultAxes;\n }\n\n // TODO: divide into separated settings for chart types\n function getFrame(frame?: Frame | HeatmapFrame): Frame | HeatmapFrame {\n if (!frame) {\n return 'full';\n }\n if (chartType === 'heatmap' && !isHeatmapFrame(frame)) {\n return 'full' as HeatmapFrame;\n }\n if (chartType !== 'heatmap' && isHeatmapFrame(frame)) {\n return frame === 'none' ? 'empty' : (frame as Frame);\n }\n return frame;\n }\n\n return {\n title: {\n ...defaultAxes.title,\n ...initialAxesSettings.title\n },\n axisX: {\n ...defaultAxes.axisX,\n ...initialAxesSettings.axisX\n },\n axisY: {\n ...defaultAxes.axisY,\n ...initialAxesSettings.axisY\n },\n legend: {\n ...defaultAxes.legend,\n ...initialAxesSettings.legend\n },\n other: {\n ...defaultAxes.other,\n ...initialAxesSettings.other,\n frame: getFrame(initialAxesSettings.other?.frame)\n }\n };\n}\n\nexport const LAYER_ICONS: Record<LayersTemplate, Component> = {\n box: BoxplotIcon,\n box_binnedDots: BoxplotAndBinnedIcon,\n box_jitteredDots: BoxplotAndJitterIcon,\n binnedDots: BinnedDotsIcon,\n jitteredDots: JitteredDotsIcon,\n violin: ViolinIcon,\n violin_binnedDots: ViolinAndBinnedIcon,\n violin_jitteredDots: ViolinAndJitterIcon,\n bar: BarIcon,\n bar_line: BarAndLineIcon,\n bar_errorbar: BarAndErrorIcon,\n stackedBar: StackedBarIcon,\n stackedArea: StackedBarIcon,\n line: LineIcon,\n line_binnedDots: LineAndBinnedIcon,\n line_jitteredDots: LineAndJitterIcon,\n line_errorbar: LineAndErrorbarIcon,\n errorbar: BarAndLineIcon,\n sina: SinaIcon,\n logo: LogoIcon,\n dots: ScatterplotIcon,\n curve: LineIcon,\n curve_dots: LineAndJitterIcon,\n heatmap: HeatmapIcon,\n heatmapClustered: DendroIcon,\n dendro: DendroIcon,\n bins: BarIcon,\n bubble: HeatmapIcon\n};\n\ntype Option = { value: string; text: string };\nexport const STAT_TEST_METHOD: Option[] = [\n { value: 'ttest', text: 'TTest' },\n { value: 'anova', text: 'ANOVA' },\n { value: 'wilcoxon', text: 'Wilcoxon' },\n { value: 'kruskalWallis', text: 'Kruskal-Wallis' }\n];\n\nexport const STAT_CORRECTION_METHOD: Option[] = [\n { value: 'BenjaminiHochberg', text: 'Benjamini-Hochberg' },\n { value: 'BenjaminiYekutieli', text: 'Benjamini-Yekutieli' },\n { value: 'Bonferroni', text: 'Bonferroni' },\n { value: 'Hochberg', text: 'Hochberg' },\n { value: 'Holm', text: 'Holm' },\n { value: 'Hommel', text: 'Hommel' },\n { value: 'none', text: 'None' }\n];\n\nexport const FORMAT_P_VALUE_OPTIONS: Option[] = [\n { value: 'pValue', text: 'p-value' },\n { value: 'significance', text: 'significance' }\n];\n\nexport type AesType = 'fill' | 'stroke' | 'dotShape' | 'lineType' | 'size';\n\nexport const DEFAULT_WIDTH = 600;\nexport const DEFAULT_HEIGHT = 350;\nexport const DEFAULT_WIDTH_SMALL = 400;\nexport const DEFAULT_HEIGHT_SMALL = 250;\n\nexport const MAX_SEARCH_OPTIONS_LIST_LENGTH = 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package/dist/GraphMaker/forms/LayersForm/Layer/discrete/StackedArea.vue.d.ts ADDED
@@ -0,0 +1,3 @@
1
+ declare const _default: import('vue').DefineComponent<{}, {}, {}, {}, {}, import('vue').ComponentOptionsMixin, import('vue').ComponentOptionsMixin, {}, string, import('vue').PublicProps, Readonly<{}> & Readonly<{}>, {}, {}, {}, {}, string, import('vue').ComponentProvideOptions, true, {}, any>;
2
+ export default _default;
3
+ //# sourceMappingURL=StackedArea.vue.d.ts.map
package/dist/GraphMaker/forms/LayersForm/Layer/discrete/StackedArea.vue.d.ts.map ADDED
@@ -0,0 +1 @@
1
+ {"version":3,"file":"StackedArea.vue.d.ts","sourceRoot":"","sources":["../../../../../../src/GraphMaker/forms/LayersForm/Layer/discrete/StackedArea.vue"],"names":[],"mappings":";AAoUA,wBAKG"}