@mhalder/qdrant-mcp-server 3.2.1 → 3.3.0

package/build/tools/schemas.d.ts

@@ -9,7 +9,11 @@
 import { z } from "zod";
 export declare const CreateCollectionSchema: {
     name: z.ZodString;
-    distance: z.ZodOptional<z.ZodEnum<["Cosine", "Euclid", "Dot"]>>;
+    distance: z.ZodOptional<z.ZodEnum<{
+        Cosine: "Cosine";
+        Euclid: "Euclid";
+        Dot: "Dot";
+    }>>;
     enableHybrid: z.ZodOptional<z.ZodBoolean>;
 };
 export declare const DeleteCollectionSchema: {
@@ -21,22 +25,14 @@ export declare const GetCollectionInfoSchema: {
 export declare const AddDocumentsSchema: {
     collection: z.ZodString;
     documents: z.ZodArray<z.ZodObject<{
-        id: z.ZodUnion<[z.ZodString, z.ZodNumber]>;
+        id: z.ZodUnion<readonly [z.ZodString, z.ZodNumber]>;
         text: z.ZodString;
         metadata: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodAny>>;
-    }, "strip", z.ZodTypeAny, {
-        id: string | number;
-        text: string;
-        metadata?: Record<string, any> | undefined;
-    }, {
-        id: string | number;
-        text: string;
-        metadata?: Record<string, any> | undefined;
-    }>, "many">;
+    }, z.core.$strip>>;
 };
 export declare const DeleteDocumentsSchema: {
     collection: z.ZodString;
-    ids: z.ZodArray<z.ZodUnion<[z.ZodString, z.ZodNumber]>, "many">;
+    ids: z.ZodArray<z.ZodUnion<readonly [z.ZodString, z.ZodNumber]>>;
 };
 export declare const SemanticSearchSchema: {
     collection: z.ZodString;
@@ -53,14 +49,14 @@ export declare const HybridSearchSchema: {
 export declare const IndexCodebaseSchema: {
     path: z.ZodString;
     forceReindex: z.ZodOptional<z.ZodBoolean>;
-    extensions: z.ZodOptional<z.ZodArray<z.ZodString, "many">>;
-    ignorePatterns: z.ZodOptional<z.ZodArray<z.ZodString, "many">>;
+    extensions: z.ZodOptional<z.ZodArray<z.ZodString>>;
+    ignorePatterns: z.ZodOptional<z.ZodArray<z.ZodString>>;
 };
 export declare const SearchCodeSchema: {
     path: z.ZodString;
     query: z.ZodString;
     limit: z.ZodOptional<z.ZodNumber>;
-    fileTypes: z.ZodOptional<z.ZodArray<z.ZodString, "many">>;
+    fileTypes: z.ZodOptional<z.ZodArray<z.ZodString>>;
     pathPattern: z.ZodOptional<z.ZodString>;
 };
 export declare const ReindexChangesSchema: {
@@ -82,8 +78,21 @@ export declare const SearchGitHistorySchema: {
     path: z.ZodString;
     query: z.ZodString;
     limit: z.ZodOptional<z.ZodNumber>;
-    commitTypes: z.ZodOptional<z.ZodArray<z.ZodEnum<["feat", "fix", "refactor", "docs", "test", "chore", "style", "perf", "build", "ci", "revert", "other"]>, "many">>;
-    authors: z.ZodOptional<z.ZodArray<z.ZodString, "many">>;
+    commitTypes: z.ZodOptional<z.ZodArray<z.ZodEnum<{
+        test: "test";
+        feat: "feat";
+        fix: "fix";
+        refactor: "refactor";
+        docs: "docs";
+        chore: "chore";
+        style: "style";
+        perf: "perf";
+        build: "build";
+        ci: "ci";
+        revert: "revert";
+        other: "other";
+    }>>>;
+    authors: z.ZodOptional<z.ZodArray<z.ZodString>>;
     dateFrom: z.ZodOptional<z.ZodString>;
     dateTo: z.ZodOptional<z.ZodString>;
 };
@@ -104,9 +113,13 @@ export declare const ContextualSearchSchema: {
     correlate: z.ZodOptional<z.ZodBoolean>;
 };
 export declare const FederatedSearchSchema: {
-    paths: z.ZodArray<z.ZodString, "many">;
+    paths: z.ZodArray<z.ZodString>;
     query: z.ZodString;
-    searchType: z.ZodOptional<z.ZodEnum<["code", "git", "both"]>>;
+    searchType: z.ZodOptional<z.ZodEnum<{
+        git: "git";
+        code: "code";
+        both: "both";
+    }>>;
     limit: z.ZodOptional<z.ZodNumber>;
 };
 //# sourceMappingURL=schemas.d.ts.map

package/build/tools/schemas.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"schemas.d.ts","sourceRoot":"","sources":["../../src/tools/schemas.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAGxB,eAAO,MAAM,sBAAsB;;;;CAUlC,CAAC;AAEF,eAAO,MAAM,sBAAsB;;CAElC,CAAC;AAEF,eAAO,MAAM,uBAAuB;;CAEnC,CAAC;AAGF,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;CAgB9B,CAAC;AAEF,eAAO,MAAM,qBAAqB;;;CAKjC,CAAC;AAGF,eAAO,MAAM,oBAAoB;;;;;CAQhC,CAAC;AAEF,eAAO,MAAM,kBAAkB;;;;;CAQ9B,CAAC;AAGF,eAAO,MAAM,mBAAmB;;;;;CAkB/B,CAAC;AAEF,eAAO,MAAM,gBAAgB;;;;;;CAiB5B,CAAC;AAEF,eAAO,MAAM,oBAAoB;;CAEhC,CAAC;AAEF,eAAO,MAAM,oBAAoB;;CAEhC,CAAC;AAEF,eAAO,MAAM,gBAAgB;;CAE5B,CAAC;AAGF,eAAO,MAAM,qBAAqB;;;;;CAgBjC,CAAC;AAEF,eAAO,MAAM,sBAAsB;;;;;;;;CA0ClC,CAAC;AAEF,eAAO,MAAM,qBAAqB;;CAEjC,CAAC;AAEF,eAAO,MAAM,uBAAuB;;CAEnC,CAAC;AAEF,eAAO,MAAM,mBAAmB;;CAE/B,CAAC;AAGF,eAAO,MAAM,sBAAsB;;;;;;CAmBlC,CAAC;AAGF,eAAO,MAAM,qBAAqB;;;;;CAcjC,CAAC"}
+{"version":3,"file":"schemas.d.ts","sourceRoot":"","sources":["../../src/tools/schemas.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAGxB,eAAO,MAAM,sBAAsB;;;;;;;;CAUlC,CAAC;AAEF,eAAO,MAAM,sBAAsB;;CAElC,CAAC;AAEF,eAAO,MAAM,uBAAuB;;CAEnC,CAAC;AAGF,eAAO,MAAM,kBAAkB;;;;;;;CAgB9B,CAAC;AAEF,eAAO,MAAM,qBAAqB;;;CAKjC,CAAC;AAGF,eAAO,MAAM,oBAAoB;;;;;CAWhC,CAAC;AAEF,eAAO,MAAM,kBAAkB;;;;;CAW9B,CAAC;AAGF,eAAO,MAAM,mBAAmB;;;;;CAkB/B,CAAC;AAEF,eAAO,MAAM,gBAAgB;;;;;;CAiB5B,CAAC;AAEF,eAAO,MAAM,oBAAoB;;CAEhC,CAAC;AAEF,eAAO,MAAM,oBAAoB;;CAEhC,CAAC;AAEF,eAAO,MAAM,gBAAgB;;CAE5B,CAAC;AAGF,eAAO,MAAM,qBAAqB;;;;;CAgBjC,CAAC;AAEF,eAAO,MAAM,sBAAsB;;;;;;;;;;;;;;;;;;;;;CA0ClC,CAAC;AAEF,eAAO,MAAM,qBAAqB;;CAEjC,CAAC;AAEF,eAAO,MAAM,uBAAuB;;CAEnC,CAAC;AAEF,eAAO,MAAM,mBAAmB;;CAE/B,CAAC;AAGF,eAAO,MAAM,sBAAsB;;;;;;CAmBlC,CAAC;AAGF,eAAO,MAAM,qBAAqB;;;;;;;;;CAcjC,CAAC"}

package/build/tools/schemas.js

@@ -35,7 +35,7 @@ export const AddDocumentsSchema = {
             .describe("Unique identifier for the document"),
         text: z.string().describe("Text content to embed and store"),
         metadata: z
-            .record(z.any())
+            .record(z.string(), z.any())
             .optional()
             .describe("Optional metadata to store with the document"),
     }))
@@ -55,7 +55,10 @@ export const SemanticSearchSchema = {
         .number()
         .optional()
         .describe("Maximum number of results (default: 5)"),
-    filter: z.record(z.any()).optional().describe("Optional metadata filter"),
+    filter: z
+        .record(z.string(), z.any())
+        .optional()
+        .describe("Optional metadata filter"),
 };
 export const HybridSearchSchema = {
     collection: z.string().describe("Name of the collection to search"),
@@ -64,7 +67,10 @@ export const HybridSearchSchema = {
         .number()
         .optional()
         .describe("Maximum number of results (default: 5)"),
-    filter: z.record(z.any()).optional().describe("Optional metadata filter"),
+    filter: z
+        .record(z.string(), z.any())
+        .optional()
+        .describe("Optional metadata filter"),
 };
 // Code indexing schemas
 export const IndexCodebaseSchema = {

package/build/tools/schemas.js.map

@@ -1 +1 @@
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package/build/tools/search.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"search.d.ts","sourceRoot":"","sources":["../../src/tools/search.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AAEzE,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,uBAAuB,CAAC;AAE/D,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AAMzD,MAAM,WAAW,sBAAsB;IACrC,MAAM,EAAE,aAAa,CAAC;IACtB,UAAU,EAAE,iBAAiB,CAAC;CAC/B;AAED,wBAAgB,mBAAmB,CACjC,MAAM,EAAE,SAAS,EACjB,IAAI,EAAE,sBAAsB,GAC3B,IAAI,CAyHN"}

package/build/tools/search.js

@@ -1,8 +1,11 @@
 /**
  * Search tools registration
  */
+import logger from "../logger.js";
 import { BM25SparseVectorGenerator } from "../embeddings/sparse.js";
+import { withToolLogging } from "./logging.js";
 import * as schemas from "./schemas.js";
+const log = logger.child({ component: "tools" });
 export function registerSearchTools(server, deps) {
     const { qdrant, embeddings } = deps;
     // semantic_search
@@ -10,7 +13,12 @@ export function registerSearchTools(server, deps) {
         title: "Semantic Search",
         description: "Search for documents using natural language queries. Returns the most semantically similar documents.",
         inputSchema: schemas.SemanticSearchSchema,
-    }, async ({ collection, query, limit, filter }) => {
+    }, withToolLogging("semantic_search", async ({ collection, query, limit, filter }) => {
+        log.info({
+            tool: "semantic_search",
+            collection,
+            query: query.substring(0, 80),
+        }, "Tool called");
         // Check if collection exists
         const exists = await qdrant.collectionExists(collection);
         if (!exists) {
@@ -31,13 +39,14 @@ export function registerSearchTools(server, deps) {
         return {
             content: [{ type: "text", text: JSON.stringify(results, null, 2) }],
         };
-    });
+    }));
     // hybrid_search
     server.registerTool("hybrid_search", {
         title: "Hybrid Search",
         description: "Perform hybrid search combining semantic vector search with keyword search using BM25. This provides better results by combining the strengths of both approaches. The collection must be created with enableHybrid set to true.",
         inputSchema: schemas.HybridSearchSchema,
-    }, async ({ collection, query, limit, filter }) => {
+    }, withToolLogging("hybrid_search", async ({ collection, query, limit, filter }) => {
+        log.info({ tool: "hybrid_search", collection, query: query.substring(0, 80) }, "Tool called");
         // Check if collection exists
         const exists = await qdrant.collectionExists(collection);
         if (!exists) {
@@ -74,6 +83,6 @@ export function registerSearchTools(server, deps) {
         return {
             content: [{ type: "text", text: JSON.stringify(results, null, 2) }],
         };
-    });
+    }));
 }
 //# sourceMappingURL=search.js.map

package/build/tools/search.js.map

@@ -1 +1 @@
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+{"version":3,"file":"search.js","sourceRoot":"","sources":["../../src/tools/search.ts"],"names":[],"mappings":"AAAA;;GAEG;AAGH,OAAO,MAAM,MAAM,cAAc,CAAC;AAElC,OAAO,EAAE,yBAAyB,EAAE,MAAM,yBAAyB,CAAC;AAEpE,OAAO,EAAE,eAAe,EAAE,MAAM,cAAc,CAAC;AAC/C,OAAO,KAAK,OAAO,MAAM,cAAc,CAAC;AAExC,MAAM,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,EAAE,SAAS,EAAE,OAAO,EAAE,CAAC,CAAC;AAOjD,MAAM,UAAU,mBAAmB,CACjC,MAAiB,EACjB,IAA4B;IAE5B,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,GAAG,IAAI,CAAC;IAEpC,kBAAkB;IAClB,MAAM,CAAC,YAAY,CACjB,iBAAiB,EACjB;QACE,KAAK,EAAE,iBAAiB;QACxB,WAAW,EACT,uGAAuG;QACzG,WAAW,EAAE,OAAO,CAAC,oBAAoB;KAC1C,EACD,eAAe,CACb,iBAAiB,EACjB,KAAK,EAAE,EAAE,UAAU,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,EAAE,EAAE;QAC7C,GAAG,CAAC,IAAI,CACN;YACE,IAAI,EAAE,iBAAiB;YACvB,UAAU;YACV,KAAK,EAAE,KAAK,CAAC,SAAS,CAAC,CAAC,EAAE,EAAE,CAAC;SAC9B,EACD,aAAa,CACd,CAAC;QACF,6BAA6B;QAC7B,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,gBAAgB,CAAC,UAAU,CAAC,CAAC;QACzD,IAAI,CAAC,MAAM,EAAE,CAAC;YACZ,OAAO;gBACL,OAAO,EAAE;oBACP;wBACE,IAAI,EAAE,MAAM;wBACZ,IAAI,EAAE,sBAAsB,UAAU,mBAAmB;qBAC1D;iBACF;gBACD,OAAO,EAAE,IAAI;aACd,CAAC;QACJ,CAAC;QAED,+BAA+B;QAC/B,MAAM,EAAE,SAAS,EAAE,GAAG,MAAM,UAAU,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;QAEpD,SAAS;QACT,MAAM,OAAO,GAAG,MAAM,MAAM,CAAC,MAAM,CACjC,UAAU,EACV,SAAS,EACT,KAAK,IAAI,CAAC,EACV,MAAM,CACP,CAAC;QAEF,OAAO;YACL,OAAO,EAAE,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,IAAI,EAAE,CAAC,CAAC,EAAE,CAAC;SACpE,CAAC;IACJ,CAAC,CACF,CACF,CAAC;IAEF,gBAAgB;IAChB,MAAM,CAAC,YAAY,CACjB,eAAe,EACf;QACE,KAAK,EAAE,eAAe;QACtB,WAAW,EACT,kOAAkO;QACpO,WAAW,EAAE,OAAO,CAAC,kBAAkB;KACxC,EACD,eAAe,CACb,eAAe,EACf,KAAK,EAAE,EAAE,UAAU,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,EAAE,EAAE;QAC7C,GAAG,CAAC,IAAI,CACN,EAAE,IAAI,EAAE,eAAe,EAAE,UAAU,EAAE,KAAK,EAAE,KAAK,CAAC,SAAS,CAAC,CAAC,EAAE,EAAE,CAAC,EAAE,EACpE,aAAa,CACd,CAAC;QACF,6BAA6B;QAC7B,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,gBAAgB,CAAC,UAAU,CAAC,CAAC;QACzD,IAAI,CAAC,MAAM,EAAE,CAAC;YACZ,OAAO;gBACL,OAAO,EAAE;oBACP;wBACE,IAAI,EAAE,MAAM;wBACZ,IAAI,EAAE,sBAAsB,UAAU,mBAAmB;qBAC1D;iBACF;gBACD,OAAO,EAAE,IAAI;aACd,CAAC;QACJ,CAAC;QAED,gDAAgD;QAChD,MAAM,cAAc,GAAG,MAAM,MAAM,CAAC,iBAAiB,CAAC,UAAU,CAAC,CAAC;QAClE,IAAI,CAAC,cAAc,CAAC,aAAa,EAAE,CAAC;YAClC,OAAO;gBACL,OAAO,EAAE;oBACP;wBACE,IAAI,EAAE,MAAM;wBACZ,IAAI,EAAE,sBAAsB,UAAU,+FAA+F;qBACtI;iBACF;gBACD,OAAO,EAAE,IAAI;aACd,CAAC;QACJ,CAAC;QAED,qCAAqC;QACrC,MAAM,EAAE,SAAS,EAAE,GAAG,MAAM,UAAU,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;QAEpD,mCAAmC;QACnC,MAAM,eAAe,GAAG,IAAI,yBAAyB,EAAE,CAAC;QACxD,MAAM,YAAY,GAAG,eAAe,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC;QAErD,wBAAwB;QACxB,MAAM,OAAO,GAAG,MAAM,MAAM,CAAC,YAAY,CACvC,UAAU,EACV,SAAS,EACT,YAAY,EACZ,KAAK,IAAI,CAAC,EACV,MAAM,CACP,CAAC;QAEF,OAAO;YACL,OAAO,EAAE,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,IAAI,EAAE,CAAC,CAAC,EAAE,CAAC;SACpE,CAAC;IACJ,CAAC,CACF,CACF,CAAC;AACJ,CAAC"}

package/mise.toml

@@ -0,0 +1,2 @@
+[tools]
+node = "22"

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mhalder/qdrant-mcp-server",
-  "version": "3.2.1",
+  "version": "3.3.0",
   "description": "MCP server for semantic search using local Qdrant and Ollama (default) with support for OpenAI, Cohere, and Voyage AI",
   "type": "module",
   "bin": {
@@ -40,14 +40,15 @@
     "tree-sitter": "^0.25.0"
   },
   "dependencies": {
-    "@modelcontextprotocol/sdk": "^1.25.2",
+    "@modelcontextprotocol/sdk": "^1.26.0",
     "@qdrant/js-client-rest": "^1.16.2",
     "bottleneck": "^2.19.5",
     "cohere-ai": "^7.20.0",
     "express": "^5.2.1",
     "ignore": "^7.0.5",
-    "openai": "^4.104.0",
+    "openai": "^6.18.0",
     "picomatch": "^4.0.3",
+    "pino": "^10.3.0",
     "tree-sitter": "^0.25.0",
     "tree-sitter-bash": "^0.25.1",
     "tree-sitter-go": "^0.25.0",
@@ -56,24 +57,24 @@
     "tree-sitter-python": "^0.25.0",
     "tree-sitter-rust": "^0.24.0",
     "tree-sitter-typescript": "^0.23.2",
-    "zod": "^3.25.76"
+    "zod": "^4.3.6"
   },
   "devDependencies": {
-    "@commitlint/cli": "^20.3.1",
-    "@commitlint/config-conventional": "^20.3.1",
+    "@commitlint/cli": "^20.4.1",
+    "@commitlint/config-conventional": "^20.4.1",
     "@semantic-release/changelog": "^6.0.3",
     "@semantic-release/git": "^10.0.1",
-    "@semantic-release/github": "^12.0.2",
-    "@semantic-release/npm": "^13.1.3",
+    "@semantic-release/github": "^12.0.5",
+    "@semantic-release/npm": "^13.1.4",
     "@types/express": "^5.0.6",
     "@types/node": "^22.19.7",
     "@types/picomatch": "^4.0.2",
-    "@vitest/coverage-v8": "^4.0.17",
-    "@vitest/ui": "^4.0.17",
+    "@vitest/coverage-v8": "^4.0.18",
+    "@vitest/ui": "^4.0.18",
     "husky": "^9.1.7",
-    "semantic-release": "^25.0.2",
+    "semantic-release": "^25.0.3",
     "tsx": "^4.21.0",
-    "typescript": "^5.7.2",
-    "vitest": "^4.0.17"
+    "typescript": "^5.9.3",
+    "vitest": "^4.0.18"
   }
 }

package/src/code/chunker/tree-sitter-chunker.ts

@@ -13,10 +13,13 @@ import Python from "tree-sitter-python";
 import Rust from "tree-sitter-rust";
 import TypeScript from "tree-sitter-typescript";
 
+import logger from "../../logger.js";
 import type { ChunkerConfig, CodeChunk } from "../types.js";
 import type { CodeChunker } from "./base.js";
 import { CharacterChunker } from "./character-chunker.js";
 
+const log = logger.child({ component: "tree-sitter-chunker" });
+
 interface LanguageConfig {
   parser: Parser;
   chunkableTypes: string[];
@@ -65,7 +68,11 @@ export class TreeSitterChunker implements CodeChunker {
     pyParser.setLanguage(Python as any);
     this.languages.set("python", {
       parser: pyParser,
-      chunkableTypes: ["function_definition", "class_definition", "decorated_definition"],
+      chunkableTypes: [
+        "function_definition",
+        "class_definition",
+        "decorated_definition",
+      ],
     });
 
     // Go
@@ -86,7 +93,13 @@ export class TreeSitterChunker implements CodeChunker {
     rustParser.setLanguage(Rust as any);
     this.languages.set("rust", {
       parser: rustParser,
-      chunkableTypes: ["function_item", "impl_item", "trait_item", "struct_item", "enum_item"],
+      chunkableTypes: [
+        "function_item",
+        "impl_item",
+        "trait_item",
+        "struct_item",
+        "enum_item",
+      ],
     });
 
     // Java
@@ -111,7 +124,11 @@ export class TreeSitterChunker implements CodeChunker {
     });
   }
 
-  async chunk(code: string, filePath: string, language: string): Promise<CodeChunk[]> {
+  async chunk(
+    code: string,
+    filePath: string,
+    language: string,
+  ): Promise<CodeChunk[]> {
     const langConfig = this.languages.get(language);
 
     if (!langConfig) {
@@ -124,7 +141,10 @@ export class TreeSitterChunker implements CodeChunker {
       const chunks: CodeChunk[] = [];
 
       // Find all chunkable nodes
-      const nodes = this.findChunkableNodes(tree.rootNode, langConfig.chunkableTypes);
+      const nodes = this.findChunkableNodes(
+        tree.rootNode,
+        langConfig.chunkableTypes,
+      );
 
       for (const [index, node] of nodes.entries()) {
         const content = code.substring(node.startIndex, node.endIndex);
@@ -136,7 +156,11 @@ export class TreeSitterChunker implements CodeChunker {
 
         // If chunk is too large, fall back to character chunking for this node
         if (content.length > this.config.maxChunkSize * 2) {
-          const subChunks = await this.fallbackChunker.chunk(content, filePath, language);
+          const subChunks = await this.fallbackChunker.chunk(
+            content,
+            filePath,
+            language,
+          );
           // Adjust line numbers for sub-chunks
           for (const subChunk of subChunks) {
             chunks.push({
@@ -174,7 +198,10 @@ export class TreeSitterChunker implements CodeChunker {
       return chunks;
     } catch (error) {
       // On parsing error, fallback to character-based chunking
-      console.error(`Tree-sitter parsing failed for ${filePath}:`, error);
+      log.warn(
+        { filePath, err: error },
+        "Tree-sitter parsing failed, falling back to character chunker",
+      );
       return this.fallbackChunker.chunk(code, filePath, language);
     }
   }
@@ -192,7 +219,7 @@ export class TreeSitterChunker implements CodeChunker {
    */
   private findChunkableNodes(
     node: Parser.SyntaxNode,
-    chunkableTypes: string[]
+    chunkableTypes: string[],
   ): Parser.SyntaxNode[] {
     const nodes: Parser.SyntaxNode[] = [];
 
@@ -215,7 +242,10 @@ export class TreeSitterChunker implements CodeChunker {
   /**
    * Extract function/class name from AST node
    */
-  private extractName(node: Parser.SyntaxNode, code: string): string | undefined {
+  private extractName(
+    node: Parser.SyntaxNode,
+    code: string,
+  ): string | undefined {
     // Try to find name node
     const nameNode = node.childForFieldName("name");
     if (nameNode) {
@@ -235,7 +265,9 @@ export class TreeSitterChunker implements CodeChunker {
   /**
    * Map AST node type to chunk type
    */
-  private getChunkType(nodeType: string): "function" | "class" | "interface" | "block" {
+  private getChunkType(
+    nodeType: string,
+  ): "function" | "class" | "interface" | "block" {
     if (nodeType.includes("function") || nodeType.includes("method")) {
       return "function";
     }

package/src/code/indexer.ts

@@ -8,6 +8,7 @@ import { promises as fs } from "node:fs";
 import { extname, join, relative, resolve } from "node:path";
 import { promisify } from "node:util";
 import picomatch from "picomatch";
+import logger from "../logger.js";
 import type { EmbeddingProvider } from "../embeddings/base.js";
 import { BM25SparseVectorGenerator } from "../embeddings/sparse.js";
 import { normalizeRemoteUrl } from "../git/extractor.js";
@@ -34,6 +35,8 @@ const execFileAsync = promisify(execFile);
 const INDEXING_METADATA_ID = "__indexing_metadata__";
 
 export class CodeIndexer {
+  private log = logger.child({ component: "code-indexer" });
+
   constructor(
     private qdrant: QdrantManager,
     private embeddings: EmbeddingProvider,
@@ -83,6 +86,8 @@ export class CodeIndexer {
     const absolutePath = await this.validatePath(path);
     const collectionName = await this.getCollectionName(absolutePath);
 
+    this.log.info({ path: absolutePath, collectionName }, "Indexing started");
+
     try {
       // 1. Scan files
       progressCallback?.({
@@ -105,6 +110,7 @@ export class CodeIndexer {
       const files = await scanner.scanDirectory(absolutePath);
 
       stats.filesScanned = files.length;
+      this.log.info({ filesFound: files.length }, "File scan complete");
 
       if (files.length === 0) {
         stats.status = "completed";
@@ -128,6 +134,7 @@ export class CodeIndexer {
           "Cosine",
           this.config.enableHybridSearch,
         );
+        this.log.debug({ collectionName, vectorSize }, "Collection created");
       }
 
       // Store "indexing in progress" marker immediately after collection is ready
@@ -209,7 +216,7 @@ export class CodeIndexer {
         // Snapshot failure shouldn't fail the entire indexing
         const errorMessage =
           error instanceof Error ? error.message : String(error);
-        console.error("Failed to save snapshot:", errorMessage);
+        this.log.error({ err: error }, "Failed to save snapshot");
         stats.errors?.push(`Snapshot save failed: ${errorMessage}`);
       }
 
@@ -223,6 +230,10 @@ export class CodeIndexer {
 
       // 4. Generate embeddings and store in batches
       const batchSize = this.config.batchSize;
+      this.log.debug(
+        { totalChunks: allChunks.length, batchSize },
+        "Starting embedding generation",
+      );
       for (let i = 0; i < allChunks.length; i += batchSize) {
         const batch = allChunks.slice(i, i + batchSize);
 
@@ -309,6 +320,14 @@ export class CodeIndexer {
       await this.storeIndexingMarker(collectionName, true);
 
       stats.durationMs = Date.now() - startTime;
+      this.log.info(
+        {
+          filesIndexed: stats.filesIndexed,
+          chunksCreated: stats.chunksCreated,
+          durationMs: stats.durationMs,
+        },
+        "Indexing complete",
+      );
       return stats;
     } catch (error) {
       const errorMessage =
@@ -365,7 +384,7 @@ export class CodeIndexer {
       }
     } catch (error) {
       // Non-fatal: log but don't fail the indexing
-      console.error("Failed to store indexing marker:", error);
+      this.log.error({ err: error }, "Failed to store indexing marker");
     }
   }
 
@@ -564,6 +583,8 @@ export class CodeIndexer {
       const absolutePath = await this.validatePath(path);
       const collectionName = await this.getCollectionName(absolutePath);
 
+      this.log.info({ path: absolutePath }, "Reindex started");
+
       // Check if collection exists
       const exists = await this.qdrant.collectionExists(collectionName);
       if (!exists) {
@@ -640,9 +661,9 @@ export class CodeIndexer {
             await this.qdrant.deletePointsByFilter(collectionName, filter);
           } catch (error) {
             // Log but don't fail - file might not have any chunks
-            console.error(
-              `Failed to delete chunks for ${relativePath}:`,
-              error,
+            this.log.error(
+              { relativePath, err: error },
+              "Failed to delete chunks during reindex",
             );
           }
         }
@@ -677,7 +698,10 @@ export class CodeIndexer {
             allChunks.push({ chunk, id });
           }
         } catch (error) {
-          console.error(`Failed to process ${filePath}:`, error);
+          this.log.error(
+            { filePath, err: error },
+            "Failed to process file during reindex",
+          );
         }
       }
 
@@ -746,6 +770,16 @@ export class CodeIndexer {
       await synchronizer.updateSnapshot(currentFiles);
 
       stats.durationMs = Date.now() - startTime;
+      this.log.info(
+        {
+          filesAdded: stats.filesAdded,
+          filesModified: stats.filesModified,
+          filesDeleted: stats.filesDeleted,
+          chunksAdded: stats.chunksAdded,
+          durationMs: stats.durationMs,
+        },
+        "Reindex complete",
+      );
       return stats;
     } catch (error) {
       const errorMessage =
@@ -758,6 +792,7 @@ export class CodeIndexer {
    * Clear all indexed data for a codebase
    */
   async clearIndex(path: string): Promise<void> {
+    this.log.info({ path }, "Clearing index");
     const absolutePath = await this.validatePath(path);
     const collectionName = await this.getCollectionName(absolutePath);
     const exists = await this.qdrant.collectionExists(collectionName);

package/src/embeddings/cohere.test.ts

@@ -12,6 +12,18 @@ vi.mock("cohere-ai", () => ({
   }),
 }));
 
+vi.mock("../logger.js", () => ({
+  default: {
+    info: vi.fn(),
+    warn: vi.fn(),
+    error: vi.fn(),
+    debug: vi.fn(),
+    fatal: vi.fn(),
+    trace: vi.fn(),
+    child: vi.fn().mockReturnThis(),
+  },
+}));
+
 describe("CohereEmbeddings", () => {
   let embeddings: CohereEmbeddings;
 

package/src/embeddings/cohere.ts

@@ -1,5 +1,6 @@
 import { CohereClient } from "cohere-ai";
 import Bottleneck from "bottleneck";
+import logger from "../logger.js";
 import { EmbeddingProvider, EmbeddingResult, RateLimitConfig } from "./base.js";
 
 interface CohereError {
@@ -9,6 +10,7 @@ interface CohereError {
 }
 
 export class CohereEmbeddings implements EmbeddingProvider {
+  private log = logger.child({ component: "embeddings", provider: "cohere" });
   private client: CohereClient;
   private model: string;
   private dimensions: number;
@@ -76,8 +78,13 @@ export class CohereEmbeddings implements EmbeddingProvider {
       if (isRateLimitError && attempt < this.retryAttempts) {
         const delayMs = this.retryDelayMs * Math.pow(2, attempt);
         const waitTimeSeconds = (delayMs / 1000).toFixed(1);
-        console.error(
-          `Rate limit reached. Retrying in ${waitTimeSeconds}s (attempt ${attempt + 1}/${this.retryAttempts})...`,
+        this.log.warn(
+          {
+            waitTimeSeconds,
+            attempt: attempt + 1,
+            maxAttempts: this.retryAttempts,
+          },
+          "Rate limit reached, retrying",
         );
 
         await new Promise((resolve) => setTimeout(resolve, delayMs));
@@ -119,6 +126,7 @@ export class CohereEmbeddings implements EmbeddingProvider {
   }
 
   async embedBatch(texts: string[]): Promise<EmbeddingResult[]> {
+    this.log.debug({ batchSize: texts.length }, "embedBatch");
     return this.limiter.schedule(() =>
       this.retryWithBackoff(async () => {
         const response = await this.client.embed({

package/src/embeddings/factory.test.ts

@@ -1,10 +1,22 @@
-import { describe, it, expect, beforeEach, afterEach } from "vitest";
+import { describe, it, expect, beforeEach, afterEach, vi } from "vitest";
 import { EmbeddingProviderFactory, type FactoryConfig } from "./factory.js";
 import { OpenAIEmbeddings } from "./openai.js";
 import { CohereEmbeddings } from "./cohere.js";
 import { VoyageEmbeddings } from "./voyage.js";
 import { OllamaEmbeddings } from "./ollama.js";
 
+vi.mock("../logger.js", () => ({
+  default: {
+    info: vi.fn(),
+    warn: vi.fn(),
+    error: vi.fn(),
+    debug: vi.fn(),
+    fatal: vi.fn(),
+    trace: vi.fn(),
+    child: vi.fn().mockReturnThis(),
+  },
+}));
+
 describe("EmbeddingProviderFactory", () => {
   let originalEnv: NodeJS.ProcessEnv;
 

package/src/embeddings/factory.ts

@@ -1,3 +1,4 @@
+import logger from "../logger.js";
 import { EmbeddingProvider, ProviderConfig } from "./base.js";
 import { OpenAIEmbeddings } from "./openai.js";
 import { CohereEmbeddings } from "./cohere.js";
@@ -15,6 +16,8 @@ export class EmbeddingProviderFactory {
     const { provider, model, dimensions, rateLimitConfig, apiKey, baseUrl } =
       config;
 
+    logger.info({ provider, model }, "Creating embedding provider");
+
     switch (provider) {
       case "openai":
         if (!apiKey) {