@mhalder/qdrant-mcp-server 1.3.1 → 1.5.0

package/build/code/indexer.js

@@ -0,0 +1,508 @@
+/**
+ * CodeIndexer - Main orchestrator for code vectorization
+ */
+import { createHash } from "node:crypto";
+import { promises as fs } from "node:fs";
+import { extname, join, relative, resolve } from "node:path";
+import { BM25SparseVectorGenerator } from "../embeddings/sparse.js";
+import { TreeSitterChunker } from "./chunker/tree-sitter-chunker.js";
+import { MetadataExtractor } from "./metadata.js";
+import { FileScanner } from "./scanner.js";
+import { FileSynchronizer } from "./sync/synchronizer.js";
+export class CodeIndexer {
+    qdrant;
+    embeddings;
+    config;
+    constructor(qdrant, embeddings, config) {
+        this.qdrant = qdrant;
+        this.embeddings = embeddings;
+        this.config = config;
+    }
+    /**
+     * Validate that a path doesn't attempt directory traversal
+     * @throws Error if path traversal is detected
+     */
+    async validatePath(path) {
+        const absolutePath = resolve(path);
+        try {
+            // Resolve the real path (follows symlinks)
+            const realPath = await fs.realpath(absolutePath);
+            // For now, we just ensure the path exists and is resolved
+            // In a more restrictive environment, you could check against an allowlist
+            return realPath;
+        }
+        catch (error) {
+            // If realpath fails, the path doesn't exist yet or is invalid
+            // For operations like indexing, we still need to accept non-existent paths
+            // so we just return the resolved absolute path
+            return absolutePath;
+        }
+    }
+    /**
+     * Index a codebase from scratch or force re-index
+     */
+    async indexCodebase(path, options, progressCallback) {
+        const startTime = Date.now();
+        const stats = {
+            filesScanned: 0,
+            filesIndexed: 0,
+            chunksCreated: 0,
+            durationMs: 0,
+            status: "completed",
+            errors: [],
+        };
+        try {
+            const absolutePath = await this.validatePath(path);
+            // 1. Scan files
+            progressCallback?.({
+                phase: "scanning",
+                current: 0,
+                total: 100,
+                percentage: 0,
+                message: "Scanning files...",
+            });
+            const scanner = new FileScanner({
+                supportedExtensions: options?.extensions || this.config.supportedExtensions,
+                ignorePatterns: this.config.ignorePatterns,
+                customIgnorePatterns: options?.ignorePatterns || this.config.customIgnorePatterns,
+            });
+            await scanner.loadIgnorePatterns(absolutePath);
+            const files = await scanner.scanDirectory(absolutePath);
+            stats.filesScanned = files.length;
+            if (files.length === 0) {
+                stats.status = "completed";
+                stats.durationMs = Date.now() - startTime;
+                return stats;
+            }
+            // 2. Create or verify collection
+            const collectionName = this.getCollectionName(absolutePath);
+            const collectionExists = await this.qdrant.collectionExists(collectionName);
+            if (options?.forceReindex && collectionExists) {
+                await this.qdrant.deleteCollection(collectionName);
+            }
+            if (!collectionExists || options?.forceReindex) {
+                const vectorSize = this.embeddings.getDimensions();
+                await this.qdrant.createCollection(collectionName, vectorSize, "Cosine", this.config.enableHybridSearch);
+            }
+            // 3. Process files and create chunks
+            const chunker = new TreeSitterChunker({
+                chunkSize: this.config.chunkSize,
+                chunkOverlap: this.config.chunkOverlap,
+                maxChunkSize: this.config.chunkSize * 2,
+            });
+            const metadataExtractor = new MetadataExtractor();
+            const allChunks = [];
+            for (const [index, filePath] of files.entries()) {
+                try {
+                    progressCallback?.({
+                        phase: "chunking",
+                        current: index + 1,
+                        total: files.length,
+                        percentage: Math.round(((index + 1) / files.length) * 40), // 0-40%
+                        message: `Chunking file ${index + 1}/${files.length}`,
+                    });
+                    const code = await fs.readFile(filePath, "utf-8");
+                    // Check for secrets (basic detection)
+                    if (metadataExtractor.containsSecrets(code)) {
+                        stats.errors?.push(`Skipped ${filePath}: potential secrets detected`);
+                        continue;
+                    }
+                    const language = metadataExtractor.extractLanguage(filePath);
+                    const chunks = await chunker.chunk(code, filePath, language);
+                    // Apply chunk limits if configured
+                    const chunksToAdd = this.config.maxChunksPerFile
+                        ? chunks.slice(0, this.config.maxChunksPerFile)
+                        : chunks;
+                    for (const chunk of chunksToAdd) {
+                        const id = metadataExtractor.generateChunkId(chunk);
+                        allChunks.push({ chunk, id });
+                        // Check total chunk limit
+                        if (this.config.maxTotalChunks && allChunks.length >= this.config.maxTotalChunks) {
+                            break;
+                        }
+                    }
+                    stats.filesIndexed++;
+                    // Check total chunk limit
+                    if (this.config.maxTotalChunks && allChunks.length >= this.config.maxTotalChunks) {
+                        break;
+                    }
+                }
+                catch (error) {
+                    const errorMessage = error instanceof Error ? error.message : String(error);
+                    stats.errors?.push(`Failed to process ${filePath}: ${errorMessage}`);
+                }
+            }
+            stats.chunksCreated = allChunks.length;
+            // Save snapshot for incremental updates (even if no chunks were created)
+            try {
+                const synchronizer = new FileSynchronizer(absolutePath, collectionName);
+                await synchronizer.updateSnapshot(files);
+            }
+            catch (error) {
+                // Snapshot failure shouldn't fail the entire indexing
+                const errorMessage = error instanceof Error ? error.message : String(error);
+                console.error("Failed to save snapshot:", errorMessage);
+                stats.errors?.push(`Snapshot save failed: ${errorMessage}`);
+            }
+            if (allChunks.length === 0) {
+                stats.status = "completed";
+                stats.durationMs = Date.now() - startTime;
+                return stats;
+            }
+            // 4. Generate embeddings and store in batches
+            const batchSize = this.config.batchSize;
+            for (let i = 0; i < allChunks.length; i += batchSize) {
+                const batch = allChunks.slice(i, i + batchSize);
+                progressCallback?.({
+                    phase: "embedding",
+                    current: i + batch.length,
+                    total: allChunks.length,
+                    percentage: 40 + Math.round(((i + batch.length) / allChunks.length) * 30), // 40-70%
+                    message: `Generating embeddings ${i + batch.length}/${allChunks.length}`,
+                });
+                try {
+                    const texts = batch.map((b) => b.chunk.content);
+                    const embeddings = await this.embeddings.embedBatch(texts);
+                    // 5. Store to Qdrant
+                    const points = batch.map((b, idx) => ({
+                        id: b.id,
+                        vector: embeddings[idx].embedding,
+                        payload: {
+                            content: b.chunk.content,
+                            relativePath: relative(absolutePath, b.chunk.metadata.filePath),
+                            startLine: b.chunk.startLine,
+                            endLine: b.chunk.endLine,
+                            fileExtension: extname(b.chunk.metadata.filePath),
+                            language: b.chunk.metadata.language,
+                            codebasePath: absolutePath,
+                            chunkIndex: b.chunk.metadata.chunkIndex,
+                            ...(b.chunk.metadata.name && { name: b.chunk.metadata.name }),
+                            ...(b.chunk.metadata.chunkType && { chunkType: b.chunk.metadata.chunkType }),
+                        },
+                    }));
+                    progressCallback?.({
+                        phase: "storing",
+                        current: i + batch.length,
+                        total: allChunks.length,
+                        percentage: 70 + Math.round(((i + batch.length) / allChunks.length) * 30), // 70-100%
+                        message: `Storing chunks ${i + batch.length}/${allChunks.length}`,
+                    });
+                    if (this.config.enableHybridSearch) {
+                        // Generate sparse vectors for hybrid search
+                        const sparseGenerator = new BM25SparseVectorGenerator();
+                        const hybridPoints = batch.map((b, idx) => ({
+                            id: b.id,
+                            vector: embeddings[idx].embedding,
+                            sparseVector: sparseGenerator.generate(b.chunk.content),
+                            payload: {
+                                content: b.chunk.content,
+                                relativePath: relative(absolutePath, b.chunk.metadata.filePath),
+                                startLine: b.chunk.startLine,
+                                endLine: b.chunk.endLine,
+                                fileExtension: extname(b.chunk.metadata.filePath),
+                                language: b.chunk.metadata.language,
+                                codebasePath: absolutePath,
+                                chunkIndex: b.chunk.metadata.chunkIndex,
+                                ...(b.chunk.metadata.name && { name: b.chunk.metadata.name }),
+                                ...(b.chunk.metadata.chunkType && { chunkType: b.chunk.metadata.chunkType }),
+                            },
+                        }));
+                        await this.qdrant.addPointsWithSparse(collectionName, hybridPoints);
+                    }
+                    else {
+                        await this.qdrant.addPoints(collectionName, points);
+                    }
+                }
+                catch (error) {
+                    const errorMessage = error instanceof Error ? error.message : String(error);
+                    stats.errors?.push(`Failed to process batch at index ${i}: ${errorMessage}`);
+                    stats.status = "partial";
+                }
+            }
+            stats.durationMs = Date.now() - startTime;
+            return stats;
+        }
+        catch (error) {
+            const errorMessage = error instanceof Error ? error.message : String(error);
+            stats.status = "failed";
+            stats.errors?.push(`Indexing failed: ${errorMessage}`);
+            stats.durationMs = Date.now() - startTime;
+            return stats;
+        }
+    }
+    /**
+     * Search code semantically
+     */
+    async searchCode(path, query, options) {
+        const absolutePath = await this.validatePath(path);
+        const collectionName = this.getCollectionName(absolutePath);
+        // Check if collection exists
+        const exists = await this.qdrant.collectionExists(collectionName);
+        if (!exists) {
+            throw new Error(`Codebase not indexed: ${path}`);
+        }
+        // Check if collection has hybrid search enabled
+        const collectionInfo = await this.qdrant.getCollectionInfo(collectionName);
+        const useHybrid = (options?.useHybrid ?? this.config.enableHybridSearch) && collectionInfo.hybridEnabled;
+        // Generate query embedding
+        const { embedding } = await this.embeddings.embed(query);
+        // Build filter
+        let filter;
+        if (options?.fileTypes || options?.pathPattern) {
+            filter = { must: [] };
+            if (options.fileTypes && options.fileTypes.length > 0) {
+                filter.must.push({
+                    key: "fileExtension",
+                    match: { any: options.fileTypes },
+                });
+            }
+            if (options.pathPattern) {
+                // Convert glob pattern to regex (simplified)
+                const regex = options.pathPattern
+                    .replace(/\./g, "\\.")
+                    .replace(/\*\*/g, ".*")
+                    .replace(/\*/g, "[^/]*")
+                    .replace(/\?/g, ".");
+                filter.must.push({
+                    key: "relativePath",
+                    match: { text: regex },
+                });
+            }
+        }
+        // Search with hybrid or standard search
+        let results;
+        if (useHybrid) {
+            const sparseGenerator = new BM25SparseVectorGenerator();
+            const sparseVector = sparseGenerator.generate(query);
+            results = await this.qdrant.hybridSearch(collectionName, embedding, sparseVector, options?.limit || this.config.defaultSearchLimit, filter);
+        }
+        else {
+            results = await this.qdrant.search(collectionName, embedding, options?.limit || this.config.defaultSearchLimit, filter);
+        }
+        // Apply score threshold if specified
+        const filteredResults = options?.scoreThreshold
+            ? results.filter((r) => r.score >= (options.scoreThreshold || 0))
+            : results;
+        // Format results
+        return filteredResults.map((r) => ({
+            content: r.payload?.content || "",
+            filePath: r.payload?.relativePath || "",
+            startLine: r.payload?.startLine || 0,
+            endLine: r.payload?.endLine || 0,
+            language: r.payload?.language || "unknown",
+            score: r.score,
+            fileExtension: r.payload?.fileExtension || "",
+        }));
+    }
+    /**
+     * Get indexing status for a codebase
+     */
+    async getIndexStatus(path) {
+        const absolutePath = await this.validatePath(path);
+        const collectionName = this.getCollectionName(absolutePath);
+        const exists = await this.qdrant.collectionExists(collectionName);
+        if (!exists) {
+            return { isIndexed: false };
+        }
+        const info = await this.qdrant.getCollectionInfo(collectionName);
+        return {
+            isIndexed: true,
+            collectionName,
+            chunksCount: info.pointsCount,
+            // TODO: Extract unique languages and file count from collection
+            // This would require scrolling through points or maintaining separate metadata
+        };
+    }
+    /**
+     * Incrementally re-index only changed files
+     */
+    async reindexChanges(path, progressCallback) {
+        const startTime = Date.now();
+        const stats = {
+            filesAdded: 0,
+            filesModified: 0,
+            filesDeleted: 0,
+            chunksAdded: 0,
+            chunksDeleted: 0,
+            durationMs: 0,
+        };
+        try {
+            const absolutePath = await this.validatePath(path);
+            const collectionName = this.getCollectionName(absolutePath);
+            // Check if collection exists
+            const exists = await this.qdrant.collectionExists(collectionName);
+            if (!exists) {
+                throw new Error(`Codebase not indexed: ${path}`);
+            }
+            // Initialize synchronizer
+            const synchronizer = new FileSynchronizer(absolutePath, collectionName);
+            const hasSnapshot = await synchronizer.initialize();
+            if (!hasSnapshot) {
+                throw new Error("No previous snapshot found. Use index_codebase for initial indexing.");
+            }
+            // Scan current files
+            progressCallback?.({
+                phase: "scanning",
+                current: 0,
+                total: 100,
+                percentage: 0,
+                message: "Scanning for changes...",
+            });
+            const scanner = new FileScanner({
+                supportedExtensions: this.config.supportedExtensions,
+                ignorePatterns: this.config.ignorePatterns,
+                customIgnorePatterns: this.config.customIgnorePatterns,
+            });
+            await scanner.loadIgnorePatterns(absolutePath);
+            const currentFiles = await scanner.scanDirectory(absolutePath);
+            // Detect changes
+            const changes = await synchronizer.detectChanges(currentFiles);
+            stats.filesAdded = changes.added.length;
+            stats.filesModified = changes.modified.length;
+            stats.filesDeleted = changes.deleted.length;
+            if (stats.filesAdded === 0 && stats.filesModified === 0 && stats.filesDeleted === 0) {
+                stats.durationMs = Date.now() - startTime;
+                return stats;
+            }
+            const chunker = new TreeSitterChunker({
+                chunkSize: this.config.chunkSize,
+                chunkOverlap: this.config.chunkOverlap,
+                maxChunkSize: this.config.chunkSize * 2,
+            });
+            const metadataExtractor = new MetadataExtractor();
+            // Process deleted and modified files - collect chunk IDs to delete
+            const _chunkIdsToDelete = [];
+            const filesToReprocess = [...changes.modified, ...changes.deleted];
+            for (const _filePath of filesToReprocess) {
+                try {
+                    // Read old file content to generate chunk IDs for deletion
+                    // We need to regenerate the chunks to get their IDs
+                    // For now, we'll use a simpler approach: delete based on file path
+                    // This requires keeping track of chunk IDs per file
+                    // Since we don't have a direct way to query by file path,
+                    // we'll mark these as needing deletion by filename pattern
+                    // For simplicity in Phase 2, we'll re-index everything
+                    // A future enhancement would be to maintain a chunk ID mapping
+                }
+                catch (_error) {
+                    // File might be deleted, skip
+                }
+            }
+            // For Phase 2 MVP: Simply re-process all changed files
+            // TODO Phase 3: Implement proper chunk deletion by maintaining chunk ID mapping
+            const filesToIndex = [...changes.added, ...changes.modified];
+            const allChunks = [];
+            for (const [index, filePath] of filesToIndex.entries()) {
+                try {
+                    progressCallback?.({
+                        phase: "chunking",
+                        current: index + 1,
+                        total: filesToIndex.length,
+                        percentage: Math.round(((index + 1) / filesToIndex.length) * 40),
+                        message: `Processing file ${index + 1}/${filesToIndex.length}`,
+                    });
+                    const absoluteFilePath = join(absolutePath, filePath);
+                    const code = await fs.readFile(absoluteFilePath, "utf-8");
+                    // Check for secrets
+                    if (metadataExtractor.containsSecrets(code)) {
+                        continue;
+                    }
+                    const language = metadataExtractor.extractLanguage(absoluteFilePath);
+                    const chunks = await chunker.chunk(code, absoluteFilePath, language);
+                    for (const chunk of chunks) {
+                        const id = metadataExtractor.generateChunkId(chunk);
+                        allChunks.push({ chunk, id });
+                    }
+                }
+                catch (error) {
+                    console.error(`Failed to process ${filePath}:`, error);
+                }
+            }
+            stats.chunksAdded = allChunks.length;
+            // Generate embeddings and store in batches
+            const batchSize = this.config.batchSize;
+            for (let i = 0; i < allChunks.length; i += batchSize) {
+                const batch = allChunks.slice(i, i + batchSize);
+                progressCallback?.({
+                    phase: "embedding",
+                    current: i + batch.length,
+                    total: allChunks.length,
+                    percentage: 40 + Math.round(((i + batch.length) / allChunks.length) * 30),
+                    message: `Generating embeddings ${i + batch.length}/${allChunks.length}`,
+                });
+                const texts = batch.map((b) => b.chunk.content);
+                const embeddings = await this.embeddings.embedBatch(texts);
+                const points = batch.map((b, idx) => ({
+                    id: b.id,
+                    vector: embeddings[idx].embedding,
+                    payload: {
+                        content: b.chunk.content,
+                        relativePath: relative(absolutePath, b.chunk.metadata.filePath),
+                        startLine: b.chunk.startLine,
+                        endLine: b.chunk.endLine,
+                        fileExtension: extname(b.chunk.metadata.filePath),
+                        language: b.chunk.metadata.language,
+                        codebasePath: absolutePath,
+                        chunkIndex: b.chunk.metadata.chunkIndex,
+                        ...(b.chunk.metadata.name && { name: b.chunk.metadata.name }),
+                        ...(b.chunk.metadata.chunkType && { chunkType: b.chunk.metadata.chunkType }),
+                    },
+                }));
+                progressCallback?.({
+                    phase: "storing",
+                    current: i + batch.length,
+                    total: allChunks.length,
+                    percentage: 70 + Math.round(((i + batch.length) / allChunks.length) * 30),
+                    message: `Storing chunks ${i + batch.length}/${allChunks.length}`,
+                });
+                if (this.config.enableHybridSearch) {
+                    const sparseGenerator = new BM25SparseVectorGenerator();
+                    const hybridPoints = points.map((point, idx) => ({
+                        ...point,
+                        sparseVector: sparseGenerator.generate(allChunks[i + idx].chunk.content),
+                    }));
+                    await this.qdrant.addPointsWithSparse(collectionName, hybridPoints);
+                }
+                else {
+                    await this.qdrant.addPoints(collectionName, points);
+                }
+            }
+            // Update snapshot
+            await synchronizer.updateSnapshot(currentFiles);
+            stats.durationMs = Date.now() - startTime;
+            return stats;
+        }
+        catch (error) {
+            const errorMessage = error instanceof Error ? error.message : String(error);
+            throw new Error(`Incremental re-indexing failed: ${errorMessage}`);
+        }
+    }
+    /**
+     * Clear all indexed data for a codebase
+     */
+    async clearIndex(path) {
+        const absolutePath = await this.validatePath(path);
+        const collectionName = this.getCollectionName(absolutePath);
+        const exists = await this.qdrant.collectionExists(collectionName);
+        if (exists) {
+            await this.qdrant.deleteCollection(collectionName);
+        }
+        // Also delete snapshot
+        try {
+            const synchronizer = new FileSynchronizer(absolutePath, collectionName);
+            await synchronizer.deleteSnapshot();
+        }
+        catch (_error) {
+            // Ignore snapshot deletion errors
+        }
+    }
+    /**
+     * Generate deterministic collection name from codebase path
+     */
+    getCollectionName(path) {
+        const absolutePath = resolve(path);
+        const hash = createHash("md5").update(absolutePath).digest("hex");
+        return `code_${hash.substring(0, 8)}`;
+    }
+}
+//# sourceMappingURL=indexer.js.map

package/build/code/indexer.js.map

@@ -0,0 +1 @@
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package/build/code/metadata.d.ts

@@ -0,0 +1,32 @@
+/**
+ * MetadataExtractor - Extracts metadata from code chunks
+ */
+import type { CodeChunk } from "./types.js";
+export declare class MetadataExtractor {
+    /**
+     * Extract programming language from file path
+     */
+    extractLanguage(filePath: string): string;
+    /**
+     * Generate deterministic chunk ID based on content and location
+     * Format: chunk_{sha256(path:start:end:content)[:16]}
+     */
+    generateChunkId(chunk: CodeChunk): string;
+    /**
+     * Calculate simple code complexity score (optional)
+     * Based on: cyclomatic complexity indicators
+     */
+    calculateComplexity(code: string): number;
+    /**
+     * Detect potential secrets in code (basic pattern matching)
+     */
+    containsSecrets(code: string): boolean;
+    /**
+     * Extract imports/exports from code (basic regex-based)
+     */
+    extractImportsExports(code: string, language: string): {
+        imports: string[];
+        exports: string[];
+    };
+}
+//# sourceMappingURL=metadata.d.ts.map

package/build/code/metadata.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"metadata.d.ts","sourceRoot":"","sources":["../../src/code/metadata.ts"],"names":[],"mappings":"AAAA;;GAEG;AAKH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,YAAY,CAAC;AAE5C,qBAAa,iBAAiB;IAC5B;;OAEG;IACH,eAAe,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM;IAKzC;;;OAGG;IACH,eAAe,CAAC,KAAK,EAAE,SAAS,GAAG,MAAM;IAOzC;;;OAGG;IACH,mBAAmB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM;IAoCzC;;OAEG;IACH,eAAe,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO;IAsBtC;;OAEG;IACH,qBAAqB,CACnB,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,MAAM,GACf;QACD,OAAO,EAAE,MAAM,EAAE,CAAC;QAClB,OAAO,EAAE,MAAM,EAAE,CAAC;KACnB;CAiDF"}