@metriport/fhir-sdk 2.0.0 → 2.0.1

package/dist/internal/indexing.js

@@ -1,6 +1,8 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.buildDateRangeIndex = exports.buildReverseReferenceIndex = exports.buildResourceIndexes = void 0;
+exports.buildResourceIndexes = buildResourceIndexes;
+exports.buildReverseReferenceIndex = buildReverseReferenceIndex;
+exports.buildDateRangeIndex = buildDateRangeIndex;
 const reference_utils_1 = require("./reference-utils");
 const date_extraction_1 = require("./date-extraction");
 /**
@@ -38,7 +40,6 @@ function buildResourceIndexes(bundle, resourcesById, resourcesByFullUrl, resourc
     // Clear resolution stack after index building
     resolutionStack.clear();
 }
-exports.buildResourceIndexes = buildResourceIndexes;
 /**
  * Build reverse reference index for O(1) reverse lookup
  */
@@ -95,7 +96,6 @@ function buildReverseReferenceIndex(bundle, reverseReferencesById, resourcesByFu
         }
     }
 }
-exports.buildReverseReferenceIndex = buildReverseReferenceIndex;
 /**
  * Build date range index for O(log n + k) date range searches
  */
@@ -125,5 +125,4 @@ function buildDateRangeIndex(bundle, dateRangeIndex) {
         }
     }
 }
-exports.buildDateRangeIndex = buildDateRangeIndex;
 //# sourceMappingURL=indexing.js.map

package/dist/internal/indexing.js.map

@@ -1 +1 @@
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+{"version":3,"file":"indexing.js","sourceRoot":"","sources":["../../src/internal/indexing.ts"],"names":[],"mappings":";;;;;AAIA,uDAI2B;AAC3B,uDAAqE;AAErE;;GAEG;AACH,8BACE,MAAc,EACd,aAAoC,EACpC,kBAAyC,EACzC,eAAwC,EACxC,qBAAsD,EACtD,cAAqD,EACrD,eAA4B;IAE5B,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC;QAClB,OAAO;IACT,CAAC;IAED,KAAK,MAAM,KAAK,IAAI,MAAM,CAAC,KAAK,EAAE,CAAC;QACjC,IAAI,CAAC,KAAK,CAAC,QAAQ,EAAE,CAAC;YACpB,SAAS;QACX,CAAC;QAED,MAAM,QAAQ,GAAG,KAAK,CAAC,QAAQ,CAAC;QAEhC,oCAAoC;QACpC,IAAI,QAAQ,CAAC,EAAE,EAAE,CAAC;YAChB,aAAa,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,EAAE,QAAQ,CAAC,CAAC;QAC3C,CAAC;QAED,gCAAgC;QAChC,IAAI,KAAK,CAAC,OAAO,EAAE,CAAC;YAClB,kBAAkB,CAAC,GAAG,CAAC,KAAK,CAAC,OAAO,EAAE,QAAQ,CAAC,CAAC;QAClD,CAAC;QAED,mDAAmD;QACnD,MAAM,YAAY,GAAG,QAAQ,CAAC,YAAY,CAAC;QAC3C,IAAI,CAAC,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,EAAE,CAAC;YACvC,eAAe,CAAC,GAAG,CAAC,YAAY,EAAE,EAAE,CAAC,CAAC;QACxC,CAAC;QACD,oEAAoE;QACpE,eAAe,CAAC,GAAG,CAAC,YAAY,CAAE,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;IACpD,CAAC;IAED,gCAAgC;IAChC,0BAA0B,CAAC,MAAM,EAAE,qBAAqB,EAAE,kBAAkB,CAAC,CAAC;IAE9E,yBAAyB;IACzB,mBAAmB,CAAC,MAAM,EAAE,cAAc,CAAC,CAAC;IAE5C,8CAA8C;IAC9C,eAAe,CAAC,KAAK,EAAE,CAAC;AAC1B,CAAC;AAED;;GAEG;AACH,oCACE,MAAc,EACd,qBAAsD,EACtD,kBAAyC;IAEzC,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC;QAClB,OAAO;IACT,CAAC;IAED,KAAK,MAAM,KAAK,IAAI,MAAM,CAAC,KAAK,EAAE,CAAC;QACjC,IAAI,CAAC,KAAK,CAAC,QAAQ,EAAE,CAAC;YACpB,SAAS;QACX,CAAC;QAED,MAAM,QAAQ,GAAG,KAAK,CAAC,QAAQ,CAAC;QAChC,MAAM,gBAAgB,GAAG,QAAQ,CAAC,EAAE,IAAI,KAAK,CAAC,OAAO,IAAI,SAAS,CAAC;QACnE,MAAM,UAAU,GAAG,IAAA,mCAAiB,EAAC,QAAQ,CAAC,CAAC;QAE/C,KAAK,MAAM,EAAE,KAAK,EAAE,SAAS,EAAE,IAAI,UAAU,EAAE,CAAC;YAC9C,mCAAmC;YACnC,MAAM,QAAQ,GAAG,IAAA,8CAA4B,EAAC,SAAS,CAAC,CAAC;YACzD,IAAI,CAAC,QAAQ,EAAE,CAAC;gBACd,SAAS;YACX,CAAC;YAED,wEAAwE;YACxE,MAAM,UAAU,GAAqB;gBACnC,gBAAgB;gBAChB,kBAAkB,EAAE,QAAQ,CAAC,YAAY;gBACzC,cAAc,EAAE,IAAA,yCAAuB,EAAC,KAAK,CAAC;aAC/C,CAAC;YAEF,kFAAkF;YAClF,IAAI,CAAC,qBAAqB,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,CAAC;gBACzC,qBAAqB,CAAC,GAAG,CAAC,QAAQ,EAAE,EAAE,CAAC,CAAC;YAC1C,CAAC;YACD,qBAAqB,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,IAAI,CAAC,UAAU,CAAC,CAAC;YAEtD,gFAAgF;YAChF,IAAI,QAAQ,KAAK,SAAS,EAAE,CAAC;gBAC3B,IAAI,CAAC,qBAAqB,CAAC,GAAG,CAAC,SAAS,CAAC,EAAE,CAAC;oBAC1C,qBAAqB,CAAC,GAAG,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC;gBAC3C,CAAC;gBACD,qBAAqB,CAAC,GAAG,CAAC,SAAS,CAAC,EAAE,IAAI,CAAC,UAAU,CAAC,CAAC;YACzD,CAAC;YAED,4EAA4E;YAC5E,4EAA4E;YAC5E,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC;gBAC7B,4DAA4D;gBAC5D,gDAAgD;gBAChD,MAAM,cAAc,GAAG,kBAAkB,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;gBACzD,IACE,cAAc,EAAE,EAAE;oBAClB,cAAc,CAAC,EAAE,KAAK,QAAQ;oBAC9B,cAAc,CAAC,EAAE,KAAK,SAAS,EAC/B,CAAC;oBACD,IAAI,CAAC,qBAAqB,CAAC,GAAG,CAAC,cAAc,CAAC,EAAE,CAAC,EAAE,CAAC;wBAClD,qBAAqB,CAAC,GAAG,CAAC,cAAc,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC;oBACnD,CAAC;oBACD,qBAAqB,CAAC,GAAG,CAAC,cAAc,CAAC,EAAE,CAAC,EAAE,IAAI,CAAC,UAAU,CAAC,CAAC;gBACjE,CAAC;YACH,CAAC;QACH,CAAC;IACH,CAAC;AACH,CAAC;AAED;;GAEG;AACH,6BACE,MAAc,EACd,cAAqD;IAErD,IAAI,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC;QAClB,OAAO;IACT,CAAC;IAED,KAAK,MAAM,KAAK,IAAI,MAAM,CAAC,KAAK,EAAE,CAAC;QACjC,IAAI,CAAC,KAAK,CAAC,QAAQ,IAAI,CAAC,KAAK,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;YAC1C,SAAS;QACX,CAAC;QAED,MAAM,QAAQ,GAAG,KAAK,CAAC,QAAQ,CAAC;QAChC,MAAM,aAAa,GAAG,IAAA,kDAAgC,EAAC,QAAQ,CAAC,CAAC;QAEjE,KAAK,MAAM,QAAQ,IAAI,aAAa,EAAE,CAAC;YACrC,IAAI,CAAC;gBACH,cAAc,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC;YAClC,CAAC;YAAC,OAAO,KAAK,EAAE,CAAC;gBACf,wCAAwC;gBACxC,OAAO,CAAC,IAAI,CACV,kCAAkC,QAAQ,CAAC,GAAG,KAAK,QAAQ,CAAC,IAAI,gCAAgC,CACjG,CAAC;gBACF,cAAc,CAAC,MAAM,CAAC;oBACpB,GAAG,QAAQ;oBACX,GAAG,EAAE,QAAQ,CAAC,IAAI;oBAClB,IAAI,EAAE,QAAQ,CAAC,GAAG;iBACnB,CAAC,CAAC;YACL,CAAC;QACH,CAAC;IACH,CAAC;AACH,CAAC"}

package/dist/internal/llm-context.d.ts

@@ -8,6 +8,11 @@ import { LLMContextOptions, WalkResult } from "../types/sdk-types";
  * Returns an immutable copy without mutating the original.
  */
 export declare function stripNonClinicalData<T extends Resource>(resource: T): T;
+/**
+ * Format a Smart resource and its referenced resources as inline-nested YAML.
+ * Referenced resources are expanded directly within the parent resource up to maxDepth.
+ */
+export declare function formatAsYaml<T extends Resource>(startResource: Smart<T>, maxDepth: number): string;
 /**
  * Group resources by their resource type
  */

package/dist/internal/llm-context.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"llm-context.d.ts","sourceRoot":"","sources":["../../src/internal/llm-context.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAC9C,OAAO,EAAE,KAAK,EAA4B,MAAM,0BAA0B,CAAC;AAC3E,OAAO,EAAE,iBAAiB,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAC;AAuBnE;;;;;GAKG;AACH,wBAAgB,oBAAoB,CAAC,CAAC,SAAS,QAAQ,EAAE,QAAQ,EAAE,CAAC,GAAG,CAAC,CAkCvE;AAED;;GAEG;AACH,wBAAgB,oBAAoB,CAAC,SAAS,EAAE,QAAQ,EAAE,GAAG,MAAM,CAAC,MAAM,EAAE,QAAQ,EAAE,CAAC,CAetF;AAED;;GAEG;AACH,wBAAgB,oBAAoB,CAAC,QAAQ,EAAE,QAAQ,GAAG,MAAM,CA0C/D;AAED;;GAEG;AACH,wBAAgB,sBAAsB,CAAC,gBAAgB,EAAE,GAAG,CAAC,MAAM,EAAE,QAAQ,EAAE,CAAC,GAAG,MAAM,CAqCxF;AAED;;GAEG;AACH,wBAAgB,YAAY,CAAC,gBAAgB,EAAE,GAAG,CAAC,MAAM,EAAE,QAAQ,EAAE,CAAC,GAAG,MAAM,CAc9E;AAED;;;;;;;;GAQG;AACH,wBAAgB,kBAAkB,CAAC,CAAC,SAAS,QAAQ,EACnD,aAAa,EAAE,KAAK,CAAC,CAAC,CAAC,EACvB,OAAO,EAAE,iBAAiB,GAAG,SAAS,EACtC,gBAAgB,EAAE,CAChB,aAAa,EAAE,KAAK,CAAC,CAAC,CAAC,EACvB,OAAO,EAAE;IAAE,QAAQ,EAAE,MAAM,CAAC;IAAC,oBAAoB,EAAE,OAAO,CAAA;CAAE,KACzD,UAAU,CAAC,CAAC,CAAC,GACjB,MAAM,CAqCR"}
+{"version":3,"file":"llm-context.d.ts","sourceRoot":"","sources":["../../src/internal/llm-context.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAC9C,OAAO,EAAE,KAAK,EAA4B,MAAM,0BAA0B,CAAC;AAC3E,OAAO,EAAE,iBAAiB,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAC;AAwBnE;;;;;GAKG;AACH,wBAAgB,oBAAoB,CAAC,CAAC,SAAS,QAAQ,EAAE,QAAQ,EAAE,CAAC,GAAG,CAAC,CAkCvE;AAsED;;;GAGG;AACH,wBAAgB,YAAY,CAAC,CAAC,SAAS,QAAQ,EAC7C,aAAa,EAAE,KAAK,CAAC,CAAC,CAAC,EACvB,QAAQ,EAAE,MAAM,GACf,MAAM,CAGR;AAED;;GAEG;AACH,wBAAgB,oBAAoB,CAAC,SAAS,EAAE,QAAQ,EAAE,GAAG,MAAM,CAAC,MAAM,EAAE,QAAQ,EAAE,CAAC,CAetF;AAED;;GAEG;AACH,wBAAgB,oBAAoB,CAAC,QAAQ,EAAE,QAAQ,GAAG,MAAM,CA0C/D;AAED;;GAEG;AACH,wBAAgB,sBAAsB,CAAC,gBAAgB,EAAE,GAAG,CAAC,MAAM,EAAE,QAAQ,EAAE,CAAC,GAAG,MAAM,CAmCxF;AAED;;GAEG;AACH,wBAAgB,YAAY,CAAC,gBAAgB,EAAE,GAAG,CAAC,MAAM,EAAE,QAAQ,EAAE,CAAC,GAAG,MAAM,CAc9E;AAED;;;;;;;;GAQG;AACH,wBAAgB,kBAAkB,CAAC,CAAC,SAAS,QAAQ,EACnD,aAAa,EAAE,KAAK,CAAC,CAAC,CAAC,EACvB,OAAO,EAAE,iBAAiB,GAAG,SAAS,EACtC,gBAAgB,EAAE,CAChB,aAAa,EAAE,KAAK,CAAC,CAAC,CAAC,EACvB,OAAO,EAAE;IAAE,QAAQ,EAAE,MAAM,CAAC;IAAC,oBAAoB,EAAE,OAAO,CAAA;CAAE,KACzD,UAAU,CAAC,CAAC,CAAC,GACjB,MAAM,CAyCR"}

package/dist/internal/llm-context.js

@@ -1,7 +1,14 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.generateLLMContext = exports.formatAsJSON = exports.formatAsStructuredText = exports.formatResourceAsText = exports.groupResourcesByType = exports.stripNonClinicalData = void 0;
+exports.stripNonClinicalData = stripNonClinicalData;
+exports.formatAsYaml = formatAsYaml;
+exports.groupResourcesByType = groupResourcesByType;
+exports.formatResourceAsText = formatResourceAsText;
+exports.formatAsStructuredText = formatAsStructuredText;
+exports.formatAsJSON = formatAsJSON;
+exports.generateLLMContext = generateLLMContext;
 const smart_resources_1 = require("../types/smart-resources");
+const serialize_to_yaml_1 = require("./serialize-to-yaml");
 /**
  * Build a set of all reference field names from REFERENCE_METHOD_MAPPING.
  * Extracts base field names, handling nested paths (e.g., "participant.individual" -> "participant")
@@ -56,7 +63,66 @@ function stripNonClinicalData(resource) {
     }
     return deepCloneAndStrip(resource, resource.resourceType);
 }
-exports.stripNonClinicalData = stripNonClinicalData;
+const NOISE_FIELDS = new Set(["meta", "extension", "modifierExtension", "text", "identifier"]);
+/**
+ * Recursively build a nested plain object from a Smart resource, replacing top-level
+ * reference fields with the resolved resource data up to maxDepth.
+ * Nested reference paths (e.g. "participant.individual") are kept as raw Reference values.
+ * Cycle detection prevents infinite loops via a path-scoped visited set.
+ */
+function buildNestedResource(smartResource, depth, maxDepth, visited) {
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any
+    const plain = smartResource.toJSON();
+    const id = plain.id;
+    if (id && visited.has(id)) {
+        return { resourceType: plain.resourceType, id };
+    }
+    const nextVisited = new Set(visited);
+    if (id)
+        nextVisited.add(id);
+    const referenceMethods = smart_resources_1.REFERENCE_METHOD_MAPPING[plain.resourceType] ?? {};
+    const directRefFields = {};
+    for (const [methodName, fieldPath] of Object.entries(referenceMethods)) {
+        if (!fieldPath.includes(".")) {
+            directRefFields[fieldPath] = methodName;
+        }
+    }
+    const result = {};
+    for (const [key, value] of Object.entries(plain)) {
+        if (NOISE_FIELDS.has(key))
+            continue;
+        const methodName = directRefFields[key];
+        if (methodName !== undefined && depth < maxDepth) {
+            // eslint-disable-next-line @typescript-eslint/no-explicit-any
+            const resolved = smartResource[methodName]();
+            if (resolved !== undefined && resolved !== null) {
+                if (Array.isArray(resolved)) {
+                    const inlined = resolved
+                        .filter((r) => r !== undefined && r !== null)
+                        .map(r => buildNestedResource(r, depth + 1, maxDepth, nextVisited));
+                    if (inlined.length > 0) {
+                        result[key] = inlined;
+                        continue;
+                    }
+                }
+                else {
+                    result[key] = buildNestedResource(resolved, depth + 1, maxDepth, nextVisited);
+                    continue;
+                }
+            }
+        }
+        result[key] = JSON.parse(JSON.stringify(value));
+    }
+    return result;
+}
+/**
+ * Format a Smart resource and its referenced resources as inline-nested YAML.
+ * Referenced resources are expanded directly within the parent resource up to maxDepth.
+ */
+function formatAsYaml(startResource, maxDepth) {
+    const nested = buildNestedResource(startResource, 0, maxDepth, new Set());
+    return (0, serialize_to_yaml_1.serializeToYaml)(nested);
+}
 /**
  * Group resources by their resource type
  */
@@ -74,7 +140,6 @@ function groupResourcesByType(resources) {
     }
     return grouped;
 }
-exports.groupResourcesByType = groupResourcesByType;
 /**
  * Format a single resource as readable text
  */
@@ -115,7 +180,6 @@ function formatResourceAsText(resource) {
     }
     return lines.join("\n");
 }
-exports.formatResourceAsText = formatResourceAsText;
 /**
  * Format resources as structured text for better LLM readability
  */
@@ -125,7 +189,6 @@ function formatAsStructuredText(resourcesByDepth) {
     const primaryResources = resourcesByDepth.get(0) ?? [];
     if (primaryResources.length > 0) {
         lines.push("PRIMARY RESOURCE:");
-        lines.push("=".repeat(80));
         for (const resource of primaryResources) {
             lines.push(formatResourceAsText(resource));
             lines.push("");
@@ -137,11 +200,10 @@ function formatAsStructuredText(resourcesByDepth) {
             continue; // Already handled above
         const depthLabel = depth === 1 ? "DIRECTLY REFERENCED" : `INDIRECTLY REFERENCED (Depth ${depth})`;
         lines.push(`${depthLabel} RESOURCES:`);
-        lines.push("=".repeat(80));
         // Group by resource type for better organization
         const groupedByType = groupResourcesByType(resources);
         for (const [resourceType, typeResources] of Object.entries(groupedByType)) {
-            lines.push(`\n--- ${resourceType} (${typeResources.length}) ---\n`);
+            lines.push(`\n${resourceType} (${typeResources.length})\n`);
             for (const resource of typeResources) {
                 lines.push(formatResourceAsText(resource));
                 lines.push("");
@@ -150,7 +212,6 @@ function formatAsStructuredText(resourcesByDepth) {
     }
     return lines.join("\n");
 }
-exports.formatAsStructuredText = formatAsStructuredText;
 /**
  * Format resources as JSON with depth annotations
  */
@@ -167,7 +228,6 @@ function formatAsJSON(resourcesByDepth) {
     };
     return JSON.stringify(output, null, 2);
 }
-exports.formatAsJSON = formatAsJSON;
 /**
  * Generate LLM-friendly context from a starting resource and its related resources.
  * Uses BFS to discover related resources, strips non-clinical data, and formats output.
@@ -178,9 +238,12 @@ exports.formatAsJSON = formatAsJSON;
  * @returns Formatted string suitable for LLM context
  */
 function generateLLMContext(startResource, options, walkReferencesFn) {
-    const maxDepth = options?.maxDepth ?? 2;
+    const maxDepth = options?.maxDepth ?? 1;
     const includeStartResource = options?.includeStartResource ?? true;
-    const format = options?.format ?? "structured-text";
+    const format = options?.format ?? "yaml";
+    if (format === "yaml") {
+        return formatAsYaml(startResource, maxDepth);
+    }
     // Walk the reference graph
     const walkResult = walkReferencesFn(startResource, {
         maxDepth,
@@ -210,5 +273,4 @@ function generateLLMContext(startResource, options, walkReferencesFn) {
         return formatAsStructuredText(cleanedResourcesByDepth);
     }
 }
-exports.generateLLMContext = generateLLMContext;
 //# sourceMappingURL=llm-context.js.map

package/dist/internal/llm-context.js.map

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package/dist/internal/reference-resolution.d.ts

@@ -13,17 +13,17 @@ export declare function isArrayReferenceField(fieldName: string): boolean;
  * Resolve a single reference object to a resource
  * FR-5.5: Reference resolution methods handle both resource.id and fullUrl matching
  */
-export declare function resolveReferenceObject(referenceObj: unknown, resourcesById: Map<string, Resource>, resourcesByFullUrl: Map<string, Resource>, resolutionStack: Set<string>): Resource | undefined;
+export declare function resolveReferenceObject(referenceObj: unknown, resourcesById: Map<string, Resource>, resourcesByFullUrl: Map<string, Resource>, resolutionStack: Set<string>, fragmentResolutionRoot: Resource): Resource | undefined;
 /**
  * Resolve a reference method call to actual resources
  * FR-5.2-5.6: Handle different reference types and patterns
  */
-export declare function resolveReference(methodName: string, resource: Resource, resourcesById: Map<string, Resource>, resourcesByFullUrl: Map<string, Resource>, resolutionStack: Set<string>, createSmartResourceFn: <T extends Resource>(resource: T) => Smart<T>): Smart<Resource> | Smart<Resource>[] | undefined;
+export declare function resolveReference(methodName: string, resource: Resource, resourcesById: Map<string, Resource>, resourcesByFullUrl: Map<string, Resource>, resolutionStack: Set<string>, fragmentResolutionRoot: Resource, createSmartResourceFn: <T extends Resource>(resource: T) => Smart<T>): Smart<Resource> | Smart<Resource>[] | undefined;
 /**
  * Create a smart resource with reference resolution methods
  * FR-5.1: Resources returned by SDK have additional getter methods for each Reference field
  * FR-5.7: Reference resolution operates in O(1) time complexity per reference
  * FR-5.8: Original reference fields remain unchanged
  */
-export declare function createSmartResource<T extends Resource>(resource: T, smartResourceCache: WeakMap<Resource, Smart<Resource>>, resourcesById: Map<string, Resource>, resourcesByFullUrl: Map<string, Resource>, resolutionStack: Set<string>, getResourcesReferencingIdFn: (targetId: string, options?: ReverseReferenceOptions) => Smart<Resource>[]): Smart<T>;
+export declare function createSmartResource<T extends Resource>(resource: T, smartResourceCache: WeakMap<Resource, Smart<Resource>>, resourcesById: Map<string, Resource>, resourcesByFullUrl: Map<string, Resource>, resolutionStack: Set<string>, getResourcesReferencingIdFn: (targetId: string, options?: ReverseReferenceOptions) => Smart<Resource>[], fragmentResolutionRoot: Resource): Smart<T>;
 //# sourceMappingURL=reference-resolution.d.ts.map

package/dist/internal/reference-resolution.d.ts.map

@@ -1 +1 @@
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package/dist/internal/reference-resolution.js

@@ -1,10 +1,14 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.createSmartResource = exports.resolveReference = exports.resolveReferenceObject = exports.isArrayReferenceField = void 0;
+exports.isArrayReferenceField = isArrayReferenceField;
+exports.resolveReferenceObject = resolveReferenceObject;
+exports.resolveReference = resolveReference;
+exports.createSmartResource = createSmartResource;
 const util_1 = require("util");
 const smart_resources_1 = require("../types/smart-resources");
 const coding_utilities_1 = require("./coding-utilities");
 const transparent_proxy_1 = require("./transparent-proxy");
+const reference_utils_1 = require("./reference-utils");
 /**
  * Navigate through a nested path in a resource to get the value at that path.
  * Handles both simple paths ("subject") and nested paths ("diagnosis.condition").
@@ -94,12 +98,11 @@ function isArrayReferenceField(fieldName) {
     }
     return false;
 }
-exports.isArrayReferenceField = isArrayReferenceField;
 /**
  * Resolve a single reference object to a resource
  * FR-5.5: Reference resolution methods handle both resource.id and fullUrl matching
  */
-function resolveReferenceObject(referenceObj, resourcesById, resourcesByFullUrl, resolutionStack) {
+function resolveReferenceObject(referenceObj, resourcesById, resourcesByFullUrl, resolutionStack, fragmentResolutionRoot) {
     if (!referenceObj || typeof referenceObj !== "object" || !("reference" in referenceObj)) {
         return undefined;
     }
@@ -110,6 +113,12 @@ function resolveReferenceObject(referenceObj, resourcesById, resourcesByFullUrl,
     }
     resolutionStack.add(reference);
     try {
+        if (reference.startsWith("#")) {
+            const fromContained = (0, reference_utils_1.resolveContainedReference)(fragmentResolutionRoot, reference);
+            if (fromContained) {
+                return fromContained;
+            }
+        }
         // Try to resolve by resource ID (e.g., "Patient/123")
         if (reference.includes("/")) {
             const [, resourceId] = reference.split("/");
@@ -127,12 +136,11 @@ function resolveReferenceObject(referenceObj, resourcesById, resourcesByFullUrl,
         resolutionStack.delete(reference);
     }
 }
-exports.resolveReferenceObject = resolveReferenceObject;
 /**
  * Resolve a reference method call to actual resources
  * FR-5.2-5.6: Handle different reference types and patterns
  */
-function resolveReference(methodName, resource, resourcesById, resourcesByFullUrl, resolutionStack, createSmartResourceFn) {
+function resolveReference(methodName, resource, resourcesById, resourcesByFullUrl, resolutionStack, fragmentResolutionRoot, createSmartResourceFn) {
     const referenceField = (0, smart_resources_1.getReferenceField)(methodName, resource.resourceType);
     if (!referenceField) {
         return undefined;
@@ -147,7 +155,7 @@ function resolveReference(methodName, resource, resourcesById, resourcesByFullUr
     if (Array.isArray(referenceValue)) {
         const resolvedResources = [];
         for (const ref of referenceValue) {
-            const resolved = resolveReferenceObject(ref, resourcesById, resourcesByFullUrl, resolutionStack);
+            const resolved = resolveReferenceObject(ref, resourcesById, resourcesByFullUrl, resolutionStack, fragmentResolutionRoot);
             if (resolved) {
                 resolvedResources.push(createSmartResourceFn(resolved));
             }
@@ -155,21 +163,20 @@ function resolveReference(methodName, resource, resourcesById, resourcesByFullUr
         return resolvedResources;
     }
     // Handle single reference - we know it's not an array at this point
-    const resolved = resolveReferenceObject(referenceValue, resourcesById, resourcesByFullUrl, resolutionStack);
+    const resolved = resolveReferenceObject(referenceValue, resourcesById, resourcesByFullUrl, resolutionStack, fragmentResolutionRoot);
     if (resolved) {
         // Type assertion is safe here because we've established this is the single reference path
         return createSmartResourceFn(resolved);
     }
     return undefined;
 }
-exports.resolveReference = resolveReference;
 /**
  * Create a smart resource with reference resolution methods
  * FR-5.1: Resources returned by SDK have additional getter methods for each Reference field
  * FR-5.7: Reference resolution operates in O(1) time complexity per reference
  * FR-5.8: Original reference fields remain unchanged
  */
-function createSmartResource(resource, smartResourceCache, resourcesById, resourcesByFullUrl, resolutionStack, getResourcesReferencingIdFn) {
+function createSmartResource(resource, smartResourceCache, resourcesById, resourcesByFullUrl, resolutionStack, getResourcesReferencingIdFn, fragmentResolutionRoot) {
     // Check cache first to maintain object identity
     const cached = smartResourceCache.get(resource);
     if (cached) {
@@ -239,7 +246,7 @@ function createSmartResource(resource, smartResourceCache, resourcesById, resour
             }
             // Check if this is a reference method call
             if (typeof prop === "string" && (0, smart_resources_1.isReferenceMethod)(prop, target.resourceType)) {
-                return () => resolveReference(prop, target, resourcesById, resourcesByFullUrl, resolutionStack, res => createSmartResource(res, smartResourceCache, resourcesById, resourcesByFullUrl, resolutionStack, getResourcesReferencingIdFn));
+                return () => resolveReference(prop, target, resourcesById, resourcesByFullUrl, resolutionStack, fragmentResolutionRoot, res => createSmartResource(res, smartResourceCache, resourcesById, resourcesByFullUrl, resolutionStack, getResourcesReferencingIdFn, fragmentResolutionRoot));
             }
             // Get the property value
             const value = Reflect.get(target, prop, receiver);
@@ -284,48 +291,22 @@ function createSmartResource(resource, smartResourceCache, resourcesById, resour
             // Return original property for primitives and other types
             return value;
         },
-        // Ensure JSON serialization works correctly (FR-5.8)
         ownKeys: target => {
-            const keys = Reflect.ownKeys(target);
-            const virtualMethods = [
-                "getReferencingResources",
-                "getReferencedResources",
-                "toString",
-            ];
-            // Add reference methods for this resource type
-            const referenceMethods = smart_resources_1.REFERENCE_METHOD_MAPPING[target.resourceType];
-            if (referenceMethods) {
-                virtualMethods.push(...Object.keys(referenceMethods));
-            }
-            // Filter out internal markers and add virtual methods for DevTools
-            return [...keys.filter(key => key !== "__isSmartResource"), ...virtualMethods];
+            return Reflect.ownKeys(target).filter(key => key !== "__isSmartResource");
         },
         getOwnPropertyDescriptor: (target, prop) => {
-            // Hide internal markers from enumeration
             if (prop === "__isSmartResource" ||
                 prop === Symbol.toStringTag ||
                 prop === "toJSON" ||
-                prop === util_1.inspect.custom) {
-                return undefined;
-            }
-            // Make virtual methods enumerable for DevTools
-            if (prop === "getReferencingResources" ||
+                prop === util_1.inspect.custom ||
+                prop === "getReferencingResources" ||
                 prop === "getReferencedResources" ||
                 prop === "toString") {
-                return {
-                    enumerable: true,
-                    configurable: true,
-                    writable: false,
-                };
+                return undefined;
             }
-            // Make reference methods enumerable for DevTools
             const referenceMethods = smart_resources_1.REFERENCE_METHOD_MAPPING[target.resourceType];
             if (referenceMethods && typeof prop === "string" && prop in referenceMethods) {
-                return {
-                    enumerable: true,
-                    configurable: true,
-                    writable: false,
-                };
+                return undefined;
             }
             return Reflect.getOwnPropertyDescriptor(target, prop);
         },
@@ -334,5 +315,4 @@ function createSmartResource(resource, smartResourceCache, resourcesById, resour
     smartResourceCache.set(resource, smartResource);
     return smartResource;
 }
-exports.createSmartResource = createSmartResource;
 //# sourceMappingURL=reference-resolution.js.map

package/dist/internal/reference-resolution.js.map

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package/dist/internal/reference-utils.d.ts

@@ -6,6 +6,10 @@ export declare function findAllReferences(resource: Resource): Array<{
     field: string;
     reference: string;
 }>;
+/**
+ * Resolve a fragment reference (e.g. #localId) against a resource's contained array.
+ */
+export declare function resolveContainedReference(fragmentRoot: Resource, reference: string): Resource | undefined;
 /**
  * Extract target resource ID from a reference string
  */
@@ -18,10 +22,11 @@ export declare function extractTargetIdFromReference(reference: string): string
  */
 export declare function normalizeReferenceField(field: string): string;
 /**
- * Check if a reference can be resolved within the bundle
+ * Check if a reference can be resolved within the bundle (and optional contained context)
  * @param reference - The reference string to check
  * @param resourcesById - Map of resources indexed by resource.id
  * @param resourcesByFullUrl - Map of resources indexed by entry.fullUrl
+ * @param sourceResource - Bundle entry resource; used to resolve #fragment against contained
  */
-export declare function canResolveReference(reference: string, resourcesById: Map<string, Resource>, resourcesByFullUrl: Map<string, Resource>): boolean;
+export declare function canResolveReference(reference: string, resourcesById: Map<string, Resource>, resourcesByFullUrl: Map<string, Resource>, sourceResource?: Resource): boolean;
 //# sourceMappingURL=reference-utils.d.ts.map

package/dist/internal/reference-utils.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"reference-utils.d.ts","sourceRoot":"","sources":["../../src/internal/reference-utils.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAE9C;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,QAAQ,EAAE,QAAQ,GAAG,KAAK,CAAC;IAAE,KAAK,EAAE,MAAM,CAAC;IAAC,SAAS,EAAE,MAAM,CAAA;CAAE,CAAC,CAkCjG;AAED;;GAEG;AACH,wBAAgB,4BAA4B,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAalF;AAED;;;;;GAKG;AACH,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAG7D;AAED;;;;;GAKG;AACH,wBAAgB,mBAAmB,CACjC,SAAS,EAAE,MAAM,EACjB,aAAa,EAAE,GAAG,CAAC,MAAM,EAAE,QAAQ,CAAC,EACpC,kBAAkB,EAAE,GAAG,CAAC,MAAM,EAAE,QAAQ,CAAC,GACxC,OAAO,CAeT"}
+{"version":3,"file":"reference-utils.d.ts","sourceRoot":"","sources":["../../src/internal/reference-utils.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAE9C;;GAEG;AACH,wBAAgB,iBAAiB,CAAC,QAAQ,EAAE,QAAQ,GAAG,KAAK,CAAC;IAAE,KAAK,EAAE,MAAM,CAAC;IAAC,SAAS,EAAE,MAAM,CAAA;CAAE,CAAC,CAkCjG;AAED;;GAEG;AACH,wBAAgB,yBAAyB,CACvC,YAAY,EAAE,QAAQ,EACtB,SAAS,EAAE,MAAM,GAChB,QAAQ,GAAG,SAAS,CAYtB;AAED;;GAEG;AACH,wBAAgB,4BAA4B,CAAC,SAAS,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAkBlF;AAED;;;;;GAKG;AACH,wBAAgB,uBAAuB,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,CAG7D;AAED;;;;;;GAMG;AACH,wBAAgB,mBAAmB,CACjC,SAAS,EAAE,MAAM,EACjB,aAAa,EAAE,GAAG,CAAC,MAAM,EAAE,QAAQ,CAAC,EACpC,kBAAkB,EAAE,GAAG,CAAC,MAAM,EAAE,QAAQ,CAAC,EACzC,cAAc,CAAC,EAAE,QAAQ,GACxB,OAAO,CAsBT"}

package/dist/internal/reference-utils.js

@@ -1,6 +1,10 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.canResolveReference = exports.normalizeReferenceField = exports.extractTargetIdFromReference = exports.findAllReferences = void 0;
+exports.findAllReferences = findAllReferences;
+exports.resolveContainedReference = resolveContainedReference;
+exports.extractTargetIdFromReference = extractTargetIdFromReference;
+exports.normalizeReferenceField = normalizeReferenceField;
+exports.canResolveReference = canResolveReference;
 /**
  * Find all Reference fields in a resource recursively
  */
@@ -35,7 +39,20 @@ function findAllReferences(resource) {
     searchObject(resource);
     return references;
 }
-exports.findAllReferences = findAllReferences;
+/**
+ * Resolve a fragment reference (e.g. #localId) against a resource's contained array.
+ */
+function resolveContainedReference(fragmentRoot, reference) {
+    if (!reference.startsWith("#")) {
+        return undefined;
+    }
+    const localId = reference.slice(1);
+    const contained = fragmentRoot.contained;
+    if (!localId || !contained?.length) {
+        return undefined;
+    }
+    return contained.find((entry) => entry.id === localId);
+}
 /**
  * Extract target resource ID from a reference string
  */
@@ -43,6 +60,10 @@ function extractTargetIdFromReference(reference) {
     if (!reference) {
         return undefined;
     }
+    if (reference.startsWith("#")) {
+        const localId = reference.slice(1);
+        return localId || undefined;
+    }
     // Handle "ResourceType/id" pattern
     if (reference.includes("/")) {
         const parts = reference.split("/");
@@ -51,7 +72,6 @@ function extractTargetIdFromReference(reference) {
     // Handle other reference patterns (e.g., "urn:uuid:xxx")
     return reference;
 }
-exports.extractTargetIdFromReference = extractTargetIdFromReference;
 /**
  * Normalize reference field path by removing array indices but preserving nested paths.
  * e.g., "diagnosis[0].condition" -> "diagnosis.condition"
@@ -62,14 +82,20 @@ function normalizeReferenceField(field) {
     // Remove array indices while preserving the full nested path
     return field.replace(/\[\d+\]/g, "");
 }
-exports.normalizeReferenceField = normalizeReferenceField;
 /**
- * Check if a reference can be resolved within the bundle
+ * Check if a reference can be resolved within the bundle (and optional contained context)
  * @param reference - The reference string to check
  * @param resourcesById - Map of resources indexed by resource.id
  * @param resourcesByFullUrl - Map of resources indexed by entry.fullUrl
+ * @param sourceResource - Bundle entry resource; used to resolve #fragment against contained
  */
-function canResolveReference(reference, resourcesById, resourcesByFullUrl) {
+function canResolveReference(reference, resourcesById, resourcesByFullUrl, sourceResource) {
+    if (reference.startsWith("#")) {
+        if (!sourceResource) {
+            return false;
+        }
+        return resolveContainedReference(sourceResource, reference) !== undefined;
+    }
     // Try to resolve by resource ID (e.g., "Patient/123")
     if (reference.includes("/")) {
         const [, resourceId] = reference.split("/");
@@ -83,5 +109,4 @@ function canResolveReference(reference, resourcesById, resourcesByFullUrl) {
     }
     return false;
 }
-exports.canResolveReference = canResolveReference;
 //# sourceMappingURL=reference-utils.js.map