@metriport/commonwell-cert-runner 1.4.20 → 1.4.22-alpha.0

package/lib/document-consumption.d.ts

@@ -1,5 +1,5 @@
-#!/usr/bin/env node
-import { CommonWell, Document, RequestMetadata } from "@metriport/commonwell-sdk";
-export declare function documentConsumption(commonWell: CommonWell, queryMeta: RequestMetadata): Promise<void>;
-export declare function queryDocuments(commonWell: CommonWell, queryMeta: RequestMetadata): Promise<Document[]>;
-export declare function retrieveDocument(commonWell: CommonWell, queryMeta: RequestMetadata, doc: Document): Promise<void>;
+#!/usr/bin/env node
+import { CommonWell, Document, RequestMetadata } from "@metriport/commonwell-sdk";
+export declare function documentConsumption(commonWell: CommonWell, queryMeta: RequestMetadata): Promise<void>;
+export declare function queryDocuments(commonWell: CommonWell, queryMeta: RequestMetadata): Promise<Document[]>;
+export declare function retrieveDocument(commonWell: CommonWell, queryMeta: RequestMetadata, doc: Document): Promise<void>;

package/lib/document-consumption.js

@@ -1,85 +1,85 @@
-#!/usr/bin/env node
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.retrieveDocument = exports.queryDocuments = exports.documentConsumption = void 0;
-const commonwell_sdk_1 = require("@metriport/commonwell-sdk");
-const fs = __importStar(require("fs"));
-const payloads_1 = require("./payloads");
-const shared_person_1 = require("./shared-person");
-const util_1 = require("./util");
-// Document Consumption
-// https://commonwellalliance.sharepoint.com/sites/ServiceAdopter/SitePages/Document-Consumption-(SOAP,-REST).aspx
-async function documentConsumption(commonWell, queryMeta) {
-    const documents = await queryDocuments(commonWell, queryMeta);
-    for (const doc of documents) {
-        await retrieveDocument(commonWell, queryMeta, doc);
-    }
-}
-exports.documentConsumption = documentConsumption;
-async function queryDocuments(commonWell, queryMeta) {
-    // E1: Document Query
-    console.log(`>>> E1c: Query for documents using FHIR (REST)`);
-    const { personId, patientId } = await (0, shared_person_1.findOrCreatePerson)(commonWell, queryMeta, (0, payloads_1.makeDocPerson)({ facilityId: commonWell.oid }));
-    if (!personId)
-        throw new Error(`[E1c] personId is undefined before calling getNetworkLinks()`);
-    const respLinks = await commonWell.getNetworkLinks(queryMeta, patientId);
-    console.log(respLinks);
-    const allLinks = respLinks._embedded.networkLink
-        ? respLinks._embedded.networkLink.flatMap(util_1.filterTruthy)
-        : [];
-    const lola1Links = allLinks.filter(commonwell_sdk_1.isLOLA1);
-    console.log(`Found ${allLinks.length} network links, ${lola1Links.length} are LOLA 1`);
-    for (const link of lola1Links) {
-        const upgradeURL = link._links?.upgrade?.href;
-        if (!upgradeURL) {
-            console.log(`[queryDocuments] missing upgrade URL for link `, link);
-            continue;
-        }
-        const respUpgradeLink = await commonWell.upgradeOrDowngradeNetworkLink(queryMeta, upgradeURL);
-        console.log(respUpgradeLink);
-    }
-    console.log(`>>> [E1c] Querying for docs...`);
-    const respDocQuery = await commonWell.queryDocuments(queryMeta, patientId);
-    return respDocQuery.entry;
-}
-exports.queryDocuments = queryDocuments;
-async function retrieveDocument(commonWell, queryMeta, doc) {
-    // E2: Document Retrieve
-    console.log(`>>> E2c: Retrieve documents using FHIR (REST)`);
-    // store the query result as well
-    const queryFileName = `./cw_consumption_${doc.id ?? "ID"}_${(0, payloads_1.makeId)()}.response.file`;
-    fs.writeFileSync(queryFileName, JSON.stringify(doc));
-    const fileName = `./cw_consumption_${doc.id ?? "ID"}_${(0, payloads_1.makeId)()}.contents.file`;
-    // the default is UTF-8, avoid changing the encoding if we don't know the file we're downloading
-    const outputStream = fs.createWriteStream(fileName, { encoding: undefined });
-    console.log(`File being created at ${process.cwd()}/${fileName}`);
-    const url = doc.content.location;
-    if (!url)
-        throw new Error(`[E2c] missing content.location in document ${doc.id}`);
-    await commonWell.retrieveDocument(queryMeta, url, outputStream);
-}
-exports.retrieveDocument = retrieveDocument;
+#!/usr/bin/env node
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.retrieveDocument = exports.queryDocuments = exports.documentConsumption = void 0;
+const commonwell_sdk_1 = require("@metriport/commonwell-sdk");
+const fs = __importStar(require("fs"));
+const payloads_1 = require("./payloads");
+const shared_person_1 = require("./shared-person");
+const util_1 = require("./util");
+// Document Consumption
+// https://commonwellalliance.sharepoint.com/sites/ServiceAdopter/SitePages/Document-Consumption-(SOAP,-REST).aspx
+async function documentConsumption(commonWell, queryMeta) {
+    const documents = await queryDocuments(commonWell, queryMeta);
+    for (const doc of documents) {
+        await retrieveDocument(commonWell, queryMeta, doc);
+    }
+}
+exports.documentConsumption = documentConsumption;
+async function queryDocuments(commonWell, queryMeta) {
+    // E1: Document Query
+    console.log(`>>> E1c: Query for documents using FHIR (REST)`);
+    const { personId, patientId } = await (0, shared_person_1.findOrCreatePerson)(commonWell, queryMeta, (0, payloads_1.makeDocPerson)({ facilityId: commonWell.oid }));
+    if (!personId)
+        throw new Error(`[E1c] personId is undefined before calling getNetworkLinks()`);
+    const respLinks = await commonWell.getNetworkLinks(queryMeta, patientId);
+    console.log(respLinks);
+    const allLinks = respLinks._embedded.networkLink
+        ? respLinks._embedded.networkLink.flatMap(util_1.filterTruthy)
+        : [];
+    const lola1Links = allLinks.filter(commonwell_sdk_1.isLOLA1);
+    console.log(`Found ${allLinks.length} network links, ${lola1Links.length} are LOLA 1`);
+    for (const link of lola1Links) {
+        const upgradeURL = link._links?.upgrade?.href;
+        if (!upgradeURL) {
+            console.log(`[queryDocuments] missing upgrade URL for link `, link);
+            continue;
+        }
+        const respUpgradeLink = await commonWell.upgradeOrDowngradeNetworkLink(queryMeta, upgradeURL);
+        console.log(respUpgradeLink);
+    }
+    console.log(`>>> [E1c] Querying for docs...`);
+    const respDocQuery = await commonWell.queryDocuments(queryMeta, patientId);
+    return respDocQuery.entry;
+}
+exports.queryDocuments = queryDocuments;
+async function retrieveDocument(commonWell, queryMeta, doc) {
+    // E2: Document Retrieve
+    console.log(`>>> E2c: Retrieve documents using FHIR (REST)`);
+    // store the query result as well
+    const queryFileName = `./cw_consumption_${doc.id ?? "ID"}_${(0, payloads_1.makeId)()}.response.file`;
+    fs.writeFileSync(queryFileName, JSON.stringify(doc));
+    const fileName = `./cw_consumption_${doc.id ?? "ID"}_${(0, payloads_1.makeId)()}.contents.file`;
+    // the default is UTF-8, avoid changing the encoding if we don't know the file we're downloading
+    const outputStream = fs.createWriteStream(fileName, { encoding: undefined });
+    console.log(`File being created at ${process.cwd()}/${fileName}`);
+    const url = doc.content.location;
+    if (!url)
+        throw new Error(`[E2c] missing content.location in document ${doc.id}`);
+    await commonWell.retrieveDocument(queryMeta, url, outputStream);
+}
+exports.retrieveDocument = retrieveDocument;
 //# sourceMappingURL=document-consumption.js.map

package/lib/document-contribution.d.ts

@@ -1,7 +1,7 @@
-#!/usr/bin/env node
-import { CommonWell, RequestMetadata } from "@metriport/commonwell-sdk";
-export declare function documentContribution({ memberManagementApi, api: apiDefaultOrg, queryMeta, }: {
-    memberManagementApi: CommonWell;
-    api: CommonWell;
-    queryMeta: RequestMetadata;
-}): Promise<void>;
+#!/usr/bin/env node
+import { CommonWell, RequestMetadata } from "@metriport/commonwell-sdk";
+export declare function documentContribution({ memberManagementApi, api: apiDefaultOrg, queryMeta, }: {
+    memberManagementApi: CommonWell;
+    api: CommonWell;
+    queryMeta: RequestMetadata;
+}): Promise<void>;

package/lib/document-contribution.js

@@ -1,166 +1,166 @@
-#!/usr/bin/env node
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.documentContribution = void 0;
-const commonwell_sdk_1 = require("@metriport/commonwell-sdk");
-const axios_1 = __importDefault(require("axios"));
-const fs = __importStar(require("fs"));
-const lodash_1 = require("lodash");
-const payloads_1 = require("./payloads");
-const shared_person_1 = require("./shared-person");
-const util_1 = require("./util");
-const AXIOS_TIMEOUT_MILLIS = 20000;
-// Document Contribution
-// https://commonwellalliance.sharepoint.com/sites/ServiceAdopter/SitePages/Document-Contribution-(SOAP,-REST).aspx
-const commonwellPrivateKey = (0, util_1.getEnvOrFail)("COMMONWELL_ORG_PRIVATE_KEY");
-const commonwellCert = (0, util_1.getEnvOrFail)("COMMONWELL_ORG_CERTIFICATE");
-const orgIdSuffix = (0, util_1.getEnvOrFail)("DOCUMENT_CONTRIBUTION_ORGANIZATION_ID");
-const firstName = (0, util_1.getEnv)("DOCUMENT_CONTRIBUTION_PATIENT_FIRST_NAME");
-const lastName = (0, util_1.getEnv)("DOCUMENT_CONTRIBUTION_PATIENT_LAST_NAME");
-const dob = (0, util_1.getEnv)("DOCUMENT_CONTRIBUTION_PATIENT_DATE_OF_BIRTH");
-const gender = (0, util_1.getEnv)("DOCUMENT_CONTRIBUTION_PATIENT_GENDER");
-const zip = (0, util_1.getEnv)("DOCUMENT_CONTRIBUTION_PATIENT_ZIP");
-const fhirUrl = (0, util_1.getEnvOrFail)("DOCUMENT_CONTRIBUTION_FHIR_URL");
-const docUrl = (0, util_1.getEnvOrFail)("DOCUMENT_CONTRIBUTION_URL");
-const rootOid = (0, util_1.getEnvOrFail)("COMMONWELL_OID");
-async function documentContribution({ memberManagementApi, api: apiDefaultOrg, queryMeta, }) {
-    console.log(`>>> E3: Query for documents served by Metriport's FHIR server`);
-    if (!firstName) {
-        console.log(`Skipping E3 because no first name provided`);
-        return;
-    }
-    if (!lastName) {
-        console.log(`Skipping E3 because no last name provided`);
-        return;
-    }
-    if (!zip) {
-        console.log(`Skipping E3 because no zip provided`);
-        return;
-    }
-    if (!dob) {
-        console.log(`Skipping E3 because no date of birth provided`);
-        return;
-    }
-    if (!gender) {
-        console.log(`Skipping E3 because no gender provided`);
-        return;
-    }
-    const { orgAPI: apiNewOrg, orgName, orgId, } = await getOrCreateOrg(memberManagementApi, queryMeta);
-    const person = (0, payloads_1.makeDocPerson)({
-        firstName,
-        lastName,
-        zip,
-        gender,
-        dob,
-        facilityId: apiDefaultOrg.oid,
-    });
-    console.log(`Find or create patient and person on main org`);
-    const { personId, patientId: patientIdMainOrg } = await (0, shared_person_1.findOrCreatePerson)(apiDefaultOrg, queryMeta, person);
-    console.log(`personId: ${personId}`);
-    console.log(`patientId on main org: ${patientIdMainOrg}`);
-    const newPerson = (0, lodash_1.cloneDeep)(person);
-    newPerson.identifier = (0, payloads_1.makePatient)({ facilityId: apiNewOrg.oid }).identifier;
-    if (newPerson.identifier) {
-        newPerson.identifier[0].assigner = orgName;
-        newPerson.identifier[0].label = orgName;
-    }
-    const { patientId: patientIdNewOrg } = await (0, shared_person_1.findOrCreatePatient)(apiNewOrg, queryMeta, newPerson, personId);
-    console.log(`patientId: ${patientIdNewOrg}`);
-    console.log(`Get patients links`);
-    const respGetLinks = await apiNewOrg.getNetworkLinks(queryMeta, patientIdNewOrg);
-    console.log(respGetLinks);
-    const allLinks = respGetLinks._embedded.networkLink
-        ? respGetLinks._embedded.networkLink.flatMap(util_1.filterTruthy)
-        : [];
-    const lola1Links = allLinks.filter(commonwell_sdk_1.isLOLA1);
-    console.log(`Found ${allLinks.length} network links, ${lola1Links.length} are LOLA 1`);
-    for (const link of lola1Links) {
-        const upgradeURL = link._links?.upgrade?.href;
-        if (!upgradeURL) {
-            console.log(`[queryDocuments] missing upgrade URL for link `, link);
-            continue;
-        }
-        const respUpgradeLink = await apiNewOrg.upgradeOrDowngradeNetworkLink(queryMeta, upgradeURL);
-        console.log(respUpgradeLink);
-    }
-    console.log(`>>> [E3] Populating test data on FHIR server...`);
-    const fhirApi = axios_1.default.create({
-        timeout: AXIOS_TIMEOUT_MILLIS,
-        baseURL: fhirUrl,
-    });
-    // TODO: #230 we could split convertPatientIdToSubjectId() in two and reuse the part that splits the CW patientId.
-    const newPatientId = patientIdNewOrg.split("%5E%5E%5E")[0];
-    await addOrgToFHIRServer(orgId, orgName, fhirApi);
-    await addPatientToFHIRServer(newPatientId, fhirApi);
-    await addDocumentRefAndBinaryToFHIRServer(newPatientId, orgId, orgName, fhirApi);
-    console.log(`>>> [E3] Querying for docs from the main org...`);
-    const respDocQuery = await apiDefaultOrg.queryDocuments(queryMeta, patientIdMainOrg);
-    console.log(respDocQuery);
-    const documents = respDocQuery.entry ?? [];
-    for (const doc of documents) {
-        console.log(`DOCUMENT: ${JSON.stringify(doc, undefined, 2)}`);
-        // store the query result as well
-        const queryFileName = `./cw_contribution_${doc.id ?? "ID"}_${(0, payloads_1.makeId)()}.response.file`;
-        fs.writeFileSync(queryFileName, JSON.stringify(doc));
-        const fileName = `./cw_contribution_${doc.id ?? "ID"}_${(0, payloads_1.makeId)()}.contents.file`;
-        // the default is UTF-8, avoid changing the encoding if we don't know the file we're downloading
-        const outputStream = fs.createWriteStream(fileName, { encoding: undefined });
-        console.log(`File being created at ${process.cwd()}/${fileName}`);
-        const url = doc.content?.location;
-        if (url != null)
-            await apiDefaultOrg.retrieveDocument(queryMeta, url, outputStream);
-    }
-}
-exports.documentContribution = documentContribution;
-async function getOrCreateOrg(memberManagementApi, queryMeta) {
-    const orgPayload = (0, payloads_1.makeDocContribOrganization)(orgIdSuffix);
-    const orgId = orgPayload.organizationId;
-    const orgIdWithoutNamespace = orgId.slice("urn:oid:".length);
-    const orgName = orgPayload.name;
-    console.log(`Get the doc org - ID ${orgId}, name ${orgName}`);
-    const respGetOneOrg = await memberManagementApi.getOneOrg(queryMeta, orgId);
-    console.log(respGetOneOrg);
-    if (!respGetOneOrg) {
-        console.log(`Doc org not found, create one`);
-        const respCreateOrg = await memberManagementApi.createOrg(queryMeta, orgPayload);
-        console.log(respCreateOrg);
-        console.log(`Add certificate to doc org`);
-        const respAddCertificateToOrg = await memberManagementApi.addCertificateToOrg(queryMeta, payloads_1.certificate, orgIdWithoutNamespace);
-        console.log(respAddCertificateToOrg);
-    }
-    const orgAPI = new commonwell_sdk_1.CommonWell(commonwellCert, commonwellPrivateKey, orgName, //commonwellSandboxOrgName,
-    orgIdWithoutNamespace, //commonwellSandboxOID,
-    commonwell_sdk_1.APIMode.integration);
-    return { orgAPI, orgName, orgId: orgIdWithoutNamespace };
-}
-async function addOrgToFHIRServer(orgId, orgName, fhirApi) {
-    // TODO: #230 we could create data as a JS structure instead of string - easier for future code enhancements and maintenance.
+#!/usr/bin/env node
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.documentContribution = void 0;
+const commonwell_sdk_1 = require("@metriport/commonwell-sdk");
+const axios_1 = __importDefault(require("axios"));
+const fs = __importStar(require("fs"));
+const lodash_1 = require("lodash");
+const payloads_1 = require("./payloads");
+const shared_person_1 = require("./shared-person");
+const util_1 = require("./util");
+const AXIOS_TIMEOUT_MILLIS = 20000;
+// Document Contribution
+// https://commonwellalliance.sharepoint.com/sites/ServiceAdopter/SitePages/Document-Contribution-(SOAP,-REST).aspx
+const commonwellPrivateKey = (0, util_1.getEnvOrFail)("COMMONWELL_ORG_PRIVATE_KEY");
+const commonwellCert = (0, util_1.getEnvOrFail)("COMMONWELL_ORG_CERTIFICATE");
+const orgIdSuffix = (0, util_1.getEnvOrFail)("DOCUMENT_CONTRIBUTION_ORGANIZATION_ID");
+const firstName = (0, util_1.getEnv)("DOCUMENT_CONTRIBUTION_PATIENT_FIRST_NAME");
+const lastName = (0, util_1.getEnv)("DOCUMENT_CONTRIBUTION_PATIENT_LAST_NAME");
+const dob = (0, util_1.getEnv)("DOCUMENT_CONTRIBUTION_PATIENT_DATE_OF_BIRTH");
+const gender = (0, util_1.getEnv)("DOCUMENT_CONTRIBUTION_PATIENT_GENDER");
+const zip = (0, util_1.getEnv)("DOCUMENT_CONTRIBUTION_PATIENT_ZIP");
+const fhirUrl = (0, util_1.getEnvOrFail)("DOCUMENT_CONTRIBUTION_FHIR_URL");
+const docUrl = (0, util_1.getEnvOrFail)("DOCUMENT_CONTRIBUTION_URL");
+const rootOid = (0, util_1.getEnvOrFail)("COMMONWELL_OID");
+async function documentContribution({ memberManagementApi, api: apiDefaultOrg, queryMeta, }) {
+    console.log(`>>> E3: Query for documents served by Metriport's FHIR server`);
+    if (!firstName) {
+        console.log(`Skipping E3 because no first name provided`);
+        return;
+    }
+    if (!lastName) {
+        console.log(`Skipping E3 because no last name provided`);
+        return;
+    }
+    if (!zip) {
+        console.log(`Skipping E3 because no zip provided`);
+        return;
+    }
+    if (!dob) {
+        console.log(`Skipping E3 because no date of birth provided`);
+        return;
+    }
+    if (!gender) {
+        console.log(`Skipping E3 because no gender provided`);
+        return;
+    }
+    const { orgAPI: apiNewOrg, orgName, orgId, } = await getOrCreateOrg(memberManagementApi, queryMeta);
+    const person = (0, payloads_1.makeDocPerson)({
+        firstName,
+        lastName,
+        zip,
+        gender,
+        dob,
+        facilityId: apiDefaultOrg.oid,
+    });
+    console.log(`Find or create patient and person on main org`);
+    const { personId, patientId: patientIdMainOrg } = await (0, shared_person_1.findOrCreatePerson)(apiDefaultOrg, queryMeta, person);
+    console.log(`personId: ${personId}`);
+    console.log(`patientId on main org: ${patientIdMainOrg}`);
+    const newPerson = (0, lodash_1.cloneDeep)(person);
+    newPerson.identifier = (0, payloads_1.makePatient)({ facilityId: apiNewOrg.oid }).identifier;
+    if (newPerson.identifier) {
+        newPerson.identifier[0].assigner = orgName;
+        newPerson.identifier[0].label = orgName;
+    }
+    const { patientId: patientIdNewOrg } = await (0, shared_person_1.findOrCreatePatient)(apiNewOrg, queryMeta, newPerson, personId);
+    console.log(`patientId: ${patientIdNewOrg}`);
+    console.log(`Get patients links`);
+    const respGetLinks = await apiNewOrg.getNetworkLinks(queryMeta, patientIdNewOrg);
+    console.log(respGetLinks);
+    const allLinks = respGetLinks._embedded.networkLink
+        ? respGetLinks._embedded.networkLink.flatMap(util_1.filterTruthy)
+        : [];
+    const lola1Links = allLinks.filter(commonwell_sdk_1.isLOLA1);
+    console.log(`Found ${allLinks.length} network links, ${lola1Links.length} are LOLA 1`);
+    for (const link of lola1Links) {
+        const upgradeURL = link._links?.upgrade?.href;
+        if (!upgradeURL) {
+            console.log(`[queryDocuments] missing upgrade URL for link `, link);
+            continue;
+        }
+        const respUpgradeLink = await apiNewOrg.upgradeOrDowngradeNetworkLink(queryMeta, upgradeURL);
+        console.log(respUpgradeLink);
+    }
+    console.log(`>>> [E3] Populating test data on FHIR server...`);
+    const fhirApi = axios_1.default.create({
+        timeout: AXIOS_TIMEOUT_MILLIS,
+        baseURL: fhirUrl,
+    });
+    // TODO: #230 we could split convertPatientIdToSubjectId() in two and reuse the part that splits the CW patientId.
+    const newPatientId = patientIdNewOrg.split("%5E%5E%5E")[0];
+    await addOrgToFHIRServer(orgId, orgName, fhirApi);
+    await addPatientToFHIRServer(newPatientId, fhirApi);
+    await addDocumentRefAndBinaryToFHIRServer(newPatientId, orgId, orgName, fhirApi);
+    console.log(`>>> [E3] Querying for docs from the main org...`);
+    const respDocQuery = await apiDefaultOrg.queryDocuments(queryMeta, patientIdMainOrg);
+    console.log(respDocQuery);
+    const documents = respDocQuery.entry ?? [];
+    for (const doc of documents) {
+        console.log(`DOCUMENT: ${JSON.stringify(doc, undefined, 2)}`);
+        // store the query result as well
+        const queryFileName = `./cw_contribution_${doc.id ?? "ID"}_${(0, payloads_1.makeId)()}.response.file`;
+        fs.writeFileSync(queryFileName, JSON.stringify(doc));
+        const fileName = `./cw_contribution_${doc.id ?? "ID"}_${(0, payloads_1.makeId)()}.contents.file`;
+        // the default is UTF-8, avoid changing the encoding if we don't know the file we're downloading
+        const outputStream = fs.createWriteStream(fileName, { encoding: undefined });
+        console.log(`File being created at ${process.cwd()}/${fileName}`);
+        const url = doc.content?.location;
+        if (url != null)
+            await apiDefaultOrg.retrieveDocument(queryMeta, url, outputStream);
+    }
+}
+exports.documentContribution = documentContribution;
+async function getOrCreateOrg(memberManagementApi, queryMeta) {
+    const orgPayload = (0, payloads_1.makeDocContribOrganization)(orgIdSuffix);
+    const orgId = orgPayload.organizationId;
+    const orgIdWithoutNamespace = orgId.slice("urn:oid:".length);
+    const orgName = orgPayload.name;
+    console.log(`Get the doc org - ID ${orgId}, name ${orgName}`);
+    const respGetOneOrg = await memberManagementApi.getOneOrg(queryMeta, orgId);
+    console.log(respGetOneOrg);
+    if (!respGetOneOrg) {
+        console.log(`Doc org not found, create one`);
+        const respCreateOrg = await memberManagementApi.createOrg(queryMeta, orgPayload);
+        console.log(respCreateOrg);
+        console.log(`Add certificate to doc org`);
+        const respAddCertificateToOrg = await memberManagementApi.addCertificateToOrg(queryMeta, payloads_1.certificate, orgIdWithoutNamespace);
+        console.log(respAddCertificateToOrg);
+    }
+    const orgAPI = new commonwell_sdk_1.CommonWell(commonwellCert, commonwellPrivateKey, orgName, //commonwellSandboxOrgName,
+    orgIdWithoutNamespace, //commonwellSandboxOID,
+    commonwell_sdk_1.APIMode.integration);
+    return { orgAPI, orgName, orgId: orgIdWithoutNamespace };
+}
+async function addOrgToFHIRServer(orgId, orgName, fhirApi) {
+    // TODO: #230 we could create data as a JS structure instead of string - easier for future code enhancements and maintenance.
     const data = `{
     "resourceType": "Organization",
     "id": "${orgId}",
@@ -206,10 +206,10 @@ async function addOrgToFHIRServer(orgId, orgName, fhirApi) {
             "country": "US"
         }
     ]
-}`;
-    await fhirApi.put(`/Organization/${orgId}`, JSON.parse(data));
-}
-async function addPatientToFHIRServer(patientId, fhirApi) {
+}`;
+    await fhirApi.put(`/Organization/${orgId}`, JSON.parse(data));
+}
+async function addPatientToFHIRServer(patientId, fhirApi) {
     const data = `{
     "resourceType": "Patient",
     "id": "${patientId}",
@@ -412,20 +412,20 @@ async function addPatientToFHIRServer(patientId, fhirApi) {
             }
         }
     ]
-}`;
-    await fhirApi.put(`/Patient/${patientId}`, JSON.parse(data));
-}
-async function addDocumentRefAndBinaryToFHIRServer(patientId, orgId, orgName, fhirApi) {
-    const binaryId = `${orgId}.969696`;
-    const payload = fs.readFileSync("./data/doc-contrib-payload");
+}`;
+    await fhirApi.put(`/Patient/${patientId}`, JSON.parse(data));
+}
+async function addDocumentRefAndBinaryToFHIRServer(patientId, orgId, orgName, fhirApi) {
+    const binaryId = `${orgId}.969696`;
+    const payload = fs.readFileSync("./data/doc-contrib-payload");
     const binaryData = `{
     "resourceType": "Binary",
     "id": "${binaryId}",
     "contentType": "application/xml",
     "data": "${payload}"
-}`;
-    await fhirApi.put(`/Binary/${binaryId}`, JSON.parse(binaryData));
-    const docRefId = `${orgId}.696969`;
+}`;
+    await fhirApi.put(`/Binary/${binaryId}`, JSON.parse(binaryData));
+    const docRefId = `${orgId}.696969`;
     const data = `{
     "resourceType": "DocumentReference",
     "id": "${docRefId}",
@@ -507,8 +507,8 @@ async function addDocumentRefAndBinaryToFHIRServer(patientId, orgId, orgName, fh
             "type": "Patient"
         }
     }
-}`;
-    await fhirApi.put(`/DocumentReference/${docRefId}`, JSON.parse(data));
-    return { docRefId, binaryId };
-}
+}`;
+    await fhirApi.put(`/DocumentReference/${docRefId}`, JSON.parse(data));
+    return { docRefId, binaryId };
+}
 //# sourceMappingURL=document-contribution.js.map

package/lib/index.d.ts

@@ -1,3 +1,3 @@
-#!/usr/bin/env node
-import { Command } from "commander";
-export declare const program: Command;
+#!/usr/bin/env node
+import { Command } from "commander";
+export declare const program: Command;