@metaobjectsdev/cli 0.23.2 → 0.24.0

package/dist/src/commands/gen.js

@@ -1,14 +1,14 @@
-import { relative, join } from "node:path";
-import { existsSync } from "node:fs";
+import { relative } from "node:path";
 import { parseGenArgs } from "../lib/args.js";
 import { resolveGenConfig } from "../lib/config.js";
-import { loadMetaobjectsConfig } from "../lib/load-metaobjects-config.js";
+import { loadMemoryOptionsFrom, loadMetaobjectsConfig, resolveGenConfigDir } from "../lib/load-metaobjects-config.js";
 import { formatGenResult, formatGenResultToon } from "../lib/output.js";
 import { formatGenResultJson } from "../lib/output-json.js";
 import { log } from "../lib/log.js";
 import { warnIfAgentContextStale } from "../lib/agent-context-staleness.js";
+import { warnIfManifestIgnored } from "../lib/manifest-ignored-check.js";
 import { scanSourceForAntiPatterns } from "../lib/anti-patterns.js";
-import { loadMemory, DEFAULT_METADATA_DIR } from "@metaobjectsdev/sdk";
+import { loadMemory, resolveCollection } from "@metaobjectsdev/sdk";
 import { runGen, listGenerators } from "@metaobjectsdev/codegen-ts";
 function mapStatus(s) {
     switch (s) {
@@ -19,6 +19,10 @@ function mapStatus(s) {
         case "unchanged":
         case "skipped": return "unchanged";
         case "refused": return "refused";
+        // FR-038 §8 — a generated file deleted because it is no longer generated.
+        // Shown as its own outcome, not folded into "unchanged": a run summary that
+        // lists writes but hides deletions is how a silent deletion happens.
+        case "removed": return "removed";
     }
 }
 export async function genCommand(args, cwd, fmt = "text") {
@@ -35,10 +39,51 @@ export async function genCommand(args, cwd, fmt = "text") {
     if (flags.list) {
         return listGeneratorsCommand();
     }
-    // Advisory: nudge to refresh the .claude/skills docs if they predate this CLI.
-    warnIfAgentContextStale(cwd);
-    const projectRoot = cwd;
     const cliConfig = resolveGenConfig(flags);
+    // Discovery and load are two separate failure modes, kept in separate try
+    // blocks deliberately: a broad catch around both previously swallowed
+    // genuine ParseErrors (e.g. `origin.@via "X.y" ...: no such relationship
+    // "y" on X`) as "no metaobjects/ found", masking the real failure.
+    // `resolveCollection` raises `ERR_COLLECTION_NOT_FOUND` with its own
+    // message when nothing is discovered and no default directory exists.
+    //
+    // Discovery runs BEFORE the config read, deliberately: everything named BY the
+    // metadata resolves against the directory `resolveCollection` decided the
+    // metadata belongs to. Reading THAT from ambient cwd while the metadata came
+    // from an ancestor is the divergence this design exists to remove (design
+    // §4.6.1).
+    let collection;
+    try {
+        collection = await resolveCollection(cwd);
+    }
+    catch (err) {
+        log.error(err.message);
+        return 2;
+    }
+    // ...but `metaobjects.config.ts` is not named by the metadata: it is this
+    // package's own answer to a different question (design §4.6 — "how is code
+    // generated here?", per-port, versus the port-neutral "where does metadata come
+    // from?"). It gets its own nearest-ancestor walk, so a JS app under a Maven- or
+    // pip-rooted repo generates with the config sitting beside it rather than
+    // demanding one at the repo root that no such repo has (#326). Everything the
+    // TS config names follows it — `outDir`, `targets`, and the
+    // `.metaobjects/.gen-state/` merge base that mirrors that output, which must be
+    // per-package or two apps sharing one collection would clobber each other's.
+    // Nearest wins, so a subdirectory declaring nothing still walks up to the
+    // project root's config exactly as before.
+    const projectRoot = resolveGenConfigDir(cwd, collection.configDir);
+    // Advisory: nudge to refresh the .claude/skills docs if they predate this CLI.
+    // Rooted at `projectRoot`, not ambient cwd — the scaffolded agent context sits
+    // with the project that declares the metadata, so a run from a subdirectory
+    // would find no manifest there and silently skip the nudge. `meta verify` makes
+    // the same call for the same reason; the two commands describe this and the
+    // anti-pattern scan below as one advisory pass, so they must scan one tree.
+    warnIfAgentContextStale(projectRoot);
+    // Advisory: the committed hash manifest is what makes hand-edit detection work on a
+    // machine that did not generate the output. Silent unless it is ignored. Keyed on
+    // projectRoot, not cwd, for the same reason its neighbour is — the manifest belongs to
+    // whichever directory `resolveCollection` decided the metadata lives in.
+    warnIfManifestIgnored(projectRoot);
     let forgeConfig;
     try {
         forgeConfig = await loadMetaobjectsConfig(projectRoot);
@@ -49,24 +94,13 @@ export async function genCommand(args, cwd, fmt = "text") {
     }
     let metadata;
     try {
-        metadata = await loadMemory(projectRoot, {
-            ...(forgeConfig.providers !== undefined ? { providers: forgeConfig.providers } : {}),
+        metadata = await loadMemory(collection.configDir, {
+            files: collection.files,
+            ...loadMemoryOptionsFrom(forgeConfig),
         });
     }
     catch (err) {
-        const msg = err.message;
-        // Only emit the scaffold hint for the ACTUAL missing-metadata-dir
-        // condition — checked explicitly here. A broad substring match on
-        // "no such" / "cannot read" wrongly swallowed genuine ParseErrors (e.g.
-        // `origin.@via "X.y" ...: no such relationship "y" on X`) as "no
-        // metaobjects/ found", masking the real failure. Real parse/validation
-        // errors propagate with their actual message.
-        if (!existsSync(join(projectRoot, DEFAULT_METADATA_DIR))) {
-            log.error(`no metaobjects/ found in ${projectRoot}; run 'meta init' to scaffold`);
-        }
-        else {
-            log.error(`failed to load metadata: ${msg}`);
-        }
+        log.error(`failed to load metadata: ${err.message}`);
         return 2;
     }
     let result;
@@ -79,6 +113,11 @@ export async function genCommand(args, cwd, fmt = "text") {
             // --dry-run must actually preview. This was previously passed only to the
             // display object below, so a "preview" run wrote every file.
             dryRun: cliConfig.dryRun,
+            // Collection-level `scope` (Task 12b) — the output filter over
+            // GENERATED entities, never over what the collection loads. Always
+            // passed: an unconfigured project's predicate admits everything, so this
+            // is a no-op for the common case, not a behavior change.
+            scope: collection.inScope,
             ...(cliConfig.entities.length > 0 ? { entityFilter: cliConfig.entities } : {}),
         });
     }

package/dist/src/commands/gen.js.map

@@ -1 +1 @@
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package/dist/src/commands/init.d.ts

@@ -11,6 +11,14 @@ export interface InitOptions {
     wireRoot?: boolean;
     /** Scaffold ONLY the agent-context (always-on + skills + root wiring), skipping the metaobjects/ project scaffold — for dropping context into an existing/polyglot repo. */
     docsOnly?: boolean;
+    /**
+     * Write ONLY `.metaobjects/config.json` — no TypeScript scaffold (metaobjects.config.ts,
+     * codegen/generators/, package.json edits, .gitignore, agent-context files, or a
+     * metaobjects/ directory). For a Maven- or pip-rooted project that needs the Node CLI
+     * (which owns `migrate` and `verify --db` under ADR-0015) to discover its metadata
+     * without acquiring a TypeScript project it will never use.
+     */
+    configOnly?: boolean;
 }
 export interface InitResult {
     created: string[];

package/dist/src/commands/init.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../../src/commands/init.ts"],"names":[],"mappings":"AAoHA,MAAM,WAAW,WAAW;IAC1B,GAAG,EAAE,MAAM,CAAC;IACZ,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,EAAE,CAAC,EAAE,OAAO,CAAC;IACb,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,4KAA4K;IAC5K,QAAQ,CAAC,EAAE,OAAO,CAAC;CACpB;AAED,MAAM,WAAW,UAAU;IACzB,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,SAAS,EAAE,MAAM,EAAE,CAAC;IACpB,QAAQ,EAAE,MAAM,EAAE,CAAC;CACpB;AAiKD,wBAAsB,IAAI,CAAC,IAAI,EAAE,WAAW,GAAG,OAAO,CAAC,UAAU,CAAC,CAyJjE;AAwJD,wBAAgB,cAAc,IAAI,MAAM,CAEvC;AAoBD,wBAAsB,WAAW,CAAC,IAAI,EAAE,MAAM,EAAE,EAAE,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CA+C9E"}
+{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../../src/commands/init.ts"],"names":[],"mappings":"AA8HA,MAAM,WAAW,WAAW;IAC1B,GAAG,EAAE,MAAM,CAAC;IACZ,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,SAAS,CAAC,EAAE,OAAO,CAAC;IACpB,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,EAAE,CAAC,EAAE,OAAO,CAAC;IACb,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,OAAO,CAAC,EAAE,MAAM,EAAE,CAAC;IACnB,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB,4KAA4K;IAC5K,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB;;;;;;OAMG;IACH,UAAU,CAAC,EAAE,OAAO,CAAC;CACtB;AAED,MAAM,WAAW,UAAU;IACzB,OAAO,EAAE,MAAM,EAAE,CAAC;IAClB,SAAS,EAAE,MAAM,EAAE,CAAC;IACpB,QAAQ,EAAE,MAAM,EAAE,CAAC;CACpB;AAoQD,wBAAsB,IAAI,CAAC,IAAI,EAAE,WAAW,GAAG,OAAO,CAAC,UAAU,CAAC,CAmIjE;AAwJD,wBAAgB,cAAc,IAAI,MAAM,CAEvC;AAoBD,wBAAsB,WAAW,CAAC,IAAI,EAAE,MAAM,EAAE,EAAE,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CAuD9E"}

package/dist/src/commands/init.js

@@ -26,7 +26,17 @@ const META_COMMON_JSON = JSON.stringify({
 // ignore the per-target generated shadow with a narrow `*/src/generated/`
 // pattern, then explicitly re-include `migrations/` and `config.json` so the
 // tracked artifacts are never swept up even if a future broad pattern were added.
-const METAOBJECTS_GITIGNORE_BODY = `.gen-state/
+const METAOBJECTS_GITIGNORE_BODY = `# The codegen merge base. The snapshot BODIES are a second full copy of all
+# generated output — never commit those. \`.hashes.json\` is different: it is one
+# hash per generated path, and it is the only thing that lets \`meta gen\` tell "this
+# file is exactly what I wrote" from "somebody edited this" on a machine that did
+# not generate it. Without it committed, every fresh clone and every CI runner has
+# no merge base, and a hand-edited generated file cannot be recognised as such.
+#
+# The glob form matters: \`.gen-state/\` (a directory) would stop git descending, and
+# the negation below could never take effect.
+.gen-state/*
+!.gen-state/.hashes.json
 
 # Per-target codegen output routed under .metaobjects/<target>/ is regenerable
 # (re-run \`meta gen\`); never commit it. The canonical output is your configured
@@ -162,17 +172,33 @@ function warnIfMonorepoSubdir(opts, result) {
  * string[]s (or nothing) straight through is safe — no need to special-case an empty
  * or absent prior.
  */
-function stackForAgentContext(opts, prior) {
+async function stackForAgentContext(opts, prior) {
     const hasOverride = (opts.servers?.length ?? 0) > 0 || (opts.clients?.length ?? 0) > 0;
     const overrides = hasOverride
         ? { servers: opts.servers ?? [], clients: opts.clients ?? [] }
         : { servers: prior?.servers ?? [], clients: prior?.clients ?? [] };
     return resolveStack(opts.cwd, overrides);
 }
+/** Writes `contents` to `path` (relative to `cwd`), unless `dryRun` — in which case
+ *  the write is skipped entirely and the caller still records what WOULD have
+ *  landed. Factors the mkdir+writeFile pair shared by every write site below. */
+async function writeUnlessDryRun(cwd, dryRun, path, contents) {
+    if (dryRun)
+        return;
+    const abs = join(cwd, path);
+    await mkdir(dirname(abs), { recursive: true });
+    await writeFile(abs, contents, "utf8");
+}
+/** "would be VERBED" during a dry run, plain VERBED otherwise — the one tense
+ *  marker every reported write shares, so each call site states only its own
+ *  past participle instead of writing out both tenses of the whole sentence. */
+function verbed(dryRun, pastParticiple) {
+    return dryRun ? `would be ${pastParticiple}` : pastParticiple;
+}
 async function writeAgentContext(opts, result) {
     warnIfMonorepoSubdir(opts, result);
     const prior = await readManifest(opts.cwd);
-    const stack = stackForAgentContext(opts, prior);
+    const stack = await stackForAgentContext(opts, prior);
     let assembled = assemble({ contentRoot: resolveAgentContextRoot(), stack });
     if (opts.noSkills)
         assembled = assembled.filter((f) => !f.path.startsWith(".claude/skills/"));
@@ -193,38 +219,45 @@ async function writeAgentContext(opts, result) {
         ? [...decision.writes, ...decision.conflicts.map((c) => ({ path: c.path, contents: c.contents }))]
         : decision.writes;
     const conflicts = opts.force ? [] : decision.conflicts;
+    // --print-only must win outright: a documented dry run must never write. Both
+    // callers of this function (`--docs-only` and `--refresh-docs`) return from
+    // `init()` ABOVE the full-scaffold path's own printOnly guard, so without this
+    // the dry run silently scaffolded for real — the same defect `--config-only`
+    // carried. The guard lives HERE rather than as a path list beside that one
+    // because this write set is dynamic (it depends on the resolved stack), and
+    // `decision` is already the complete plan: suppressing just the I/O reports
+    // exactly the paths a real run would touch, with no second list to drift.
+    const dryRun = opts.printOnly === true;
     for (const w of writes) {
-        const abs = join(opts.cwd, w.path);
-        await mkdir(dirname(abs), { recursive: true });
-        await writeFile(abs, w.contents, "utf8");
+        await writeUnlessDryRun(opts.cwd, dryRun, w.path, w.contents);
         result.created.push(w.path);
     }
     for (const c of conflicts) {
-        const abs = join(opts.cwd, c.newPath);
-        await mkdir(dirname(abs), { recursive: true });
-        await writeFile(abs, c.contents, "utf8");
+        await writeUnlessDryRun(opts.cwd, dryRun, c.newPath, c.contents);
         result.created.push(c.newPath);
-        result.warnings.push(`${c.path} appears hand-edited; refreshed version written to ${c.newPath}`);
+        // Past tense only when it actually happened — a dry run that reports "written
+        // to <path>.new" is claiming an edit-preserving side effect the user can go
+        // look for and will not find.
+        result.warnings.push(`${c.path} appears hand-edited; refreshed version ${verbed(dryRun, "written")} to ${c.newPath}`);
     }
-    const manifestAbs = join(opts.cwd, AGENT_CONTEXT_MANIFEST_PATH);
-    await mkdir(dirname(manifestAbs), { recursive: true });
-    await writeFile(manifestAbs, JSON.stringify(decision.manifest, null, 2) + "\n", "utf8");
+    await writeUnlessDryRun(opts.cwd, dryRun, AGENT_CONTEXT_MANIFEST_PATH, JSON.stringify(decision.manifest, null, 2) + "\n");
+    result.created.push(AGENT_CONTEXT_MANIFEST_PATH);
     for (const orphan of decision.removed) {
         result.warnings.push(`${orphan} is no longer part of this stack; orphaned (safe to delete).`);
     }
     if (opts.wireRoot)
-        await wireRootMemory(opts.cwd, result);
+        await wireRootMemory(opts.cwd, result, dryRun);
 }
 const ROOT_IMPORT_LINE = "@.metaobjects/AGENTS.md";
-async function wireRootMemory(cwd, result) {
+async function wireRootMemory(cwd, result, dryRun = false) {
     const claudePath = join(cwd, "CLAUDE.md");
     const agentsPath = join(cwd, "AGENTS.md");
     const claudeExists = await fileExists(claudePath);
     const agentsExists = await fileExists(agentsPath);
     // If neither root memory file exists, create CLAUDE.md (Claude Code's canonical) with the import.
     if (!claudeExists && !agentsExists) {
-        await writeFile(claudePath, `# Project memory\n\n${ROOT_IMPORT_LINE}\n`, "utf8");
-        result.created.push("CLAUDE.md (created with MetaObjects @import)");
+        await writeUnlessDryRun(cwd, dryRun, "CLAUDE.md", `# Project memory\n\n${ROOT_IMPORT_LINE}\n`);
+        result.created.push(`CLAUDE.md (${verbed(dryRun, "created")} with MetaObjects @import)`);
         return;
     }
     // Otherwise append the import to whichever exist (idempotent — never double-add).
@@ -234,8 +267,11 @@ async function wireRootMemory(cwd, result) {
         const body = await readFile(path, "utf8");
         if (body.includes(ROOT_IMPORT_LINE))
             continue;
-        await writeFile(path, `${body.replace(/\n*$/, "\n")}\n${ROOT_IMPORT_LINE}\n`, "utf8");
-        result.warnings.push(`wired ${ROOT_IMPORT_LINE} into ${path.endsWith("AGENTS.md") ? "AGENTS.md" : "CLAUDE.md"} so the MetaObjects context loads`);
+        const target = path.endsWith("AGENTS.md") ? "AGENTS.md" : "CLAUDE.md";
+        await writeUnlessDryRun(cwd, dryRun, target, `${body.replace(/\n*$/, "\n")}\n${ROOT_IMPORT_LINE}\n`);
+        // Past tense only when it actually happened — this one mutates a file the user
+        // owns, so a dry run reporting it as done is the most misleading of the three.
+        result.warnings.push(`${verbed(dryRun, "wired")} ${ROOT_IMPORT_LINE} into ${target} so the MetaObjects context loads`);
     }
 }
 /**
@@ -258,6 +294,66 @@ async function writeOwnedGenerators(opts, result) {
         result.created.push(rel);
     }
 }
+/**
+ * .metaobjects/config.json — write fresh defaults, or preserve+merge an existing
+ * valid config. Shared by the full scaffold and `--config-only` so the two paths
+ * cannot drift on the config's default content.
+ */
+async function writeConfigFile(opts, result, agentDir, agentDirExists) {
+    const freshConfig = opts.d1
+        ? ConfigSchema.parse({ ...DEFAULT_CONFIG, migrate: buildD1MigrateBlock(opts.cwd) })
+        : DEFAULT_CONFIG;
+    const writeFresh = () => writeFile(join(agentDir, "config.json"), JSON.stringify(freshConfig, null, 2) + "\n", "utf8");
+    if (!agentDirExists) {
+        await writeFresh();
+        result.created.push(".metaobjects/config.json");
+        return;
+    }
+    const configPath = join(agentDir, "config.json");
+    let priorContent;
+    try {
+        priorContent = await readFile(configPath, "utf8");
+        const parsed = ConfigSchema.parse(JSON.parse(priorContent));
+        const merged = ConfigSchema.parse({ ...DEFAULT_CONFIG, ...parsed });
+        // When a valid .metaobjects/config.json already exists and the user passes --force,
+        // we preserve the existing config and only re-scaffold support files. The --d1 flag
+        // only takes effect on fresh inits — retro-fitting D1 onto an existing project is
+        // the user's job (edit migrate.dialect and migrate.d1 in config.json directly).
+        await saveConfig(agentDir, merged);
+        result.preserved.push(".metaobjects/config.json");
+        return;
+    }
+    catch {
+        if (priorContent === undefined) {
+            // The .metaobjects/ dir existed but config.json itself did not — a fresh write.
+            await writeFresh();
+            result.created.push(".metaobjects/config.json");
+            return;
+        }
+        // In the full-scaffold path this is only reachable once the caller has
+        // already required --force (the exists-guard at the top of `init()`
+        // throws before writeConfigFile runs otherwise), so opts.force is always
+        // true there. `--config-only` calls this function directly with no such
+        // guard, so without this check it would silently destroy an existing,
+        // merely-unparseable config on every run — the one thing `--force` is
+        // supposed to gate.
+        if (!opts.force) {
+            throw new Error(`existing .metaobjects/config.json exists but could not be parsed; refusing to overwrite it. ` +
+                `Use --force to replace it with defaults. Prior content:\n${priorContent}`);
+        }
+        log.warn("existing .metaobjects/config.json was invalid — writing fresh defaults. Prior content:");
+        log.warn(priorContent);
+        result.warnings.push("invalid .metaobjects/config.json replaced with defaults");
+        await writeFresh();
+        // F11 — matches the OTHER two `writeFresh()` call sites above: this IS a
+        // fresh write (a destructive one, replacing content that could not be
+        // parsed), not a no-op. Omitting this left it in neither `created` nor
+        // `preserved`, so the `--config-only` CLI summary (which keys on
+        // `result.created.includes(...)` alone) reported "already exists — left
+        // untouched" for a config it had just overwritten with defaults.
+        result.created.push(".metaobjects/config.json");
+    }
+}
 export async function init(opts) {
     const result = { created: [], preserved: [], warnings: [] };
     const agentDir = join(opts.cwd, DEFAULT_METAOBJECTS_DIR);
@@ -270,6 +366,21 @@ export async function init(opts) {
         await writeAgentContext(opts, result);
         return result;
     }
+    if (opts.configOnly) {
+        // --print-only must win outright: a documented dry run must never write, and
+        // this branch used to return ABOVE the printOnly guard the full-scaffold path
+        // uses below, so `--config-only --print-only` silently wrote the real file.
+        if (opts.printOnly) {
+            result.created.push(".metaobjects/config.json");
+            return result;
+        }
+        // Config only: write/preserve .metaobjects/config.json and nothing else — no
+        // metaobjects/ dir, no agent-context, no TypeScript scaffold. `agentDirExists` is
+        // captured before the mkdir below so an existing valid config is still preserved.
+        await mkdir(agentDir, { recursive: true });
+        await writeConfigFile(opts, result, agentDir, agentDirExists);
+        return result;
+    }
     if (opts.refreshDocs && exists) {
         // Refresh-only path: (re)write the agent-context docs and NOTHING else — never
         // the project scaffold (metaobjects/, config.json, codegen/generators/,
@@ -314,39 +425,7 @@ export async function init(opts) {
         result.preserved.push("metaobjects/meta.common.json");
     }
     // .metaobjects/config.json
-    const freshConfig = opts.d1
-        ? ConfigSchema.parse({ ...DEFAULT_CONFIG, migrate: buildD1MigrateBlock(opts.cwd) })
-        : DEFAULT_CONFIG;
-    if (agentDirExists) {
-        const configPath = join(agentDir, "config.json");
-        let priorContent;
-        try {
-            priorContent = await readFile(configPath, "utf8");
-            const parsed = ConfigSchema.parse(JSON.parse(priorContent));
-            const merged = ConfigSchema.parse({ ...DEFAULT_CONFIG, ...parsed });
-            // When a valid .metaobjects/config.json already exists and the user passes --force,
-            // we preserve the existing config and only re-scaffold support files. The --d1 flag
-            // only takes effect on fresh inits — retro-fitting D1 onto an existing project is
-            // the user's job (edit migrate.dialect and migrate.d1 in config.json directly).
-            await saveConfig(agentDir, merged);
-            result.preserved.push(".metaobjects/config.json");
-        }
-        catch {
-            if (priorContent !== undefined) {
-                log.warn("existing .metaobjects/config.json was invalid — writing fresh defaults. Prior content:");
-                log.warn(priorContent);
-                result.warnings.push("invalid .metaobjects/config.json replaced with defaults");
-            }
-            await writeFile(join(agentDir, "config.json"), JSON.stringify(freshConfig, null, 2) + "\n", "utf8");
-            if (priorContent === undefined) {
-                result.created.push(".metaobjects/config.json");
-            }
-        }
-    }
-    else {
-        await writeFile(join(agentDir, "config.json"), JSON.stringify(freshConfig, null, 2) + "\n", "utf8");
-        result.created.push(".metaobjects/config.json");
-    }
+    await writeConfigFile(opts, result, agentDir, agentDirExists);
     // .metaobjects/.gitignore
     await writeFile(join(agentDir, ".gitignore"), METAOBJECTS_GITIGNORE_BODY, "utf8");
     result.created.push(".metaobjects/.gitignore");
@@ -580,6 +659,7 @@ export async function initCommand(args, cwd) {
             noSkills: flags.noSkills,
             wireRoot: flags.wireRoot,
             docsOnly: flags.docsOnly,
+            configOnly: flags.configOnly,
         });
         if (flags.printOnly) {
             log.info("Would create:");
@@ -594,6 +674,16 @@ export async function initCommand(args, cwd) {
                     log.info(`  ${w}`);
                 log.info("Re-run --docs-only --refresh-docs to update; --no-wire-root to skip the root CLAUDE.md @import.");
             }
+            else if (flags.configOnly) {
+                if (result.created.includes(".metaobjects/config.json")) {
+                    log.info("Wrote .metaobjects/config.json — declare your metadata sources there for the Node CLI (migrate, verify --db).");
+                }
+                else {
+                    log.info(".metaobjects/config.json already exists — left untouched.");
+                }
+                for (const w of result.warnings)
+                    log.warn(w);
+            }
             else {
                 log.info(nextStepsBlock());
                 // Surface any scaffold warnings (e.g. the #77 monorepo-subdir agent-context

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package/dist/src/commands/migrate.d.ts

@@ -9,7 +9,11 @@ wranglerRunner?: WranglerRunner, fmt?: OutputFormat): Promise<number>;
  * `--from-metadata` (default) derives it from metadata; `--from-db` introspects
  * an existing database once. Emits no migration.
  */
-export declare function runBaseline(config: ResolvedMigrateConfig, metaRoot: string, fmt?: OutputFormat): Promise<number>;
+export declare function runBaseline(config: ResolvedMigrateConfig, metaRoot: string, fmt?: OutputFormat, 
+/** Directory whose `metaobjects.config.ts` governs — see `migrateCommand`'s
+ *  `genRoot`. Defaults to `metaRoot`, the co-located case every `meta init`
+ *  project is in and the only one the direct-call test suites construct. */
+genRoot?: string): Promise<number>;
 /**
  * `meta migrate apply-pending` — replay the committed migration files against the
  * target DB, ledger-tracked and transactional (no diff, no metadata load). This is the
@@ -25,5 +29,8 @@ export declare function runApplyPending(config: ResolvedMigrateConfig, metaRoot:
  * Scope: table/column/index/FK changes. Projection-view migrations stay on the
  * introspection path (offline-view parity is a follow-up).
  */
-export declare function runOfflineGenerate(config: ResolvedMigrateConfig, metaRoot: string, fmt?: OutputFormat): Promise<number>;
+export declare function runOfflineGenerate(config: ResolvedMigrateConfig, metaRoot: string, fmt?: OutputFormat, 
+/** Directory whose `metaobjects.config.ts` governs — see `migrateCommand`'s
+ *  `genRoot`. Defaults to `metaRoot`, the co-located case. */
+genRoot?: string): Promise<number>;
 //# sourceMappingURL=migrate.d.ts.map

package/dist/src/commands/migrate.d.ts.map

@@ -1 +1 @@
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