@memoarchitect/tools 0.6.7 → 0.7.2

package/packages/tools/lib/lock.js

@@ -8,9 +8,8 @@
 // medical device development (per platform-strategy.md §8).
 // ─────────────────────────────────────────────────────────────────────────────
 import { existsSync, readFileSync, writeFileSync } from 'node:fs';
-import { dirname, join } from 'node:path';
+import { join, resolve } from 'node:path';
 import { createHash } from 'node:crypto';
-import { loadConfigChain } from './server/config-resolver.js';
 const LOCK_FILENAME = 'memo.lock.yaml';
 /**
  * Compute a SHA-256 checksum of the memo.package.yaml (or memo.config.yaml)
@@ -66,148 +65,138 @@ function parseLock(content) {
     };
 }
 /**
- * Create a memo.lock.yaml from the resolved config chain.
- * Called by `memo init` and `memo lock`.
+ * Write memo.lock.yaml from what the project's imports actually resolved to.
+ *
+ * The lock is an application artifact, and section 5.3 is explicit about what
+ * it may do: record the package, version, and hash a native import resolved to,
+ * so a rebuild is reproducible. It may not introduce a package the import graph
+ * never named — which is why it is generated from `selectedRoots` rather than
+ * from an `extends` chain that could name packages the model never used.
  */
-export function createLockFile(configPath) {
-    const chain = loadConfigChain(configPath);
-    // The root ontology is the first package in the chain that is ontology or profile type
-    // For a device project, the direct extends target is the "ontology" identity
-    const leafConfig = chain[chain.length - 1]?.config;
-    const ontologyEntry = findOntologyRoot(chain);
-    const leafExtends = leafConfig?.extends;
-    const leafExtendsStr = Array.isArray(leafExtends) ? leafExtends.join('+') : leafExtends;
-    // Never lock a project against itself: if the extends chain did not resolve
-    // to an ontology/profile package, the lock would record a meaningless identity.
-    if (!ontologyEntry) {
-        if (leafExtendsStr) {
-            throw new Error(`ontology package "${leafExtendsStr}" could not be resolved from this directory. ` +
-                `Install it (or run inside a workspace that contains it), then run \`memo lock\`.`);
+/** Numeric semver comparison; a missing version sorts lowest. */
+function compareVersions(a, b) {
+    const parts = (v) => (v ?? '0.0.0').split('.').map(n => Number.parseInt(n, 10) || 0);
+    const [x, y] = [parts(a), parts(b)];
+    for (let i = 0; i < Math.max(x.length, y.length); i++) {
+        const d = (x[i] ?? 0) - (y[i] ?? 0);
+        if (d !== 0)
+            return d;
+    }
+    return 0;
+}
+export function createLockFile(projectRoot, selectedRoots) {
+    // One entry per package NAME, not per resolved directory.
+    //
+    // A workspace can offer the same package from two roots — an installed
+    // `node_modules/@memoarchitect/ontology` beside a linked source checkout of
+    // the same package at a different version. Recording both wrote a lock that
+    // pinned `version: 0.6.4` while the loader resolved 0.6.5 through the
+    // import graph, so every freshly initialized project failed its own
+    // ontology-version check on the first `memo validate`.
+    //
+    // The winner is the root the import graph actually resolves through: lowest
+    // importDepth, ties broken by the higher version so a rebuild is
+    // reproducible rather than dependent on directory scan order.
+    const byName = new Map();
+    for (const root of selectedRoots) {
+        const existing = byName.get(root.packageName);
+        if (!existing
+            || root.importDepth < existing.importDepth
+            || (root.importDepth === existing.importDepth
+                && compareVersions(root.packageVersion, existing.packageVersion) > 0)) {
+            byName.set(root.packageName, root);
         }
-        throw new Error(`this project declares no \`extends\` ontology in its config, so there is nothing to lock.`);
     }
+    const roots = [...byName.values()].sort((a, b) => a.packageName.localeCompare(b.packageName));
+    if (roots.length === 0) {
+        throw new Error('This project resolves no reusable packages, so there is nothing to lock. '
+            + 'Add an import to model/catalog/project.sysml first.');
+    }
+    // The primary is the package the project imports most directly. Ties break
+    // by name so the lock is byte-stable across runs.
+    const primary = [...roots].sort((a, b) => a.importDepth - b.importDepth || a.packageName.localeCompare(b.packageName))[0];
     const lock = {
-        ontology: ontologyEntry.config.ontologyMetadata?.id
-            || ontologyEntry.config.projectName
-            || leafExtendsStr
-            || 'unknown',
-        version: ontologyEntry.config.ontologyMetadata?.version || '0.0.0',
+        ontology: primary.packageName,
+        version: primary.packageVersion ?? '0.0.0',
         lockedAt: new Date().toISOString().split('T')[0],
-        packages: chain
-            .filter(e => e.config.projectType !== 'device')
-            .map(e => ({
-            name: e.config.ontologyMetadata?.id || e.config.projectName,
-            version: e.config.ontologyMetadata?.version || '0.0.0',
-            type: e.config.projectType || 'unknown',
-            checksum: checksumFile(e.configPath),
+        packages: roots.map(root => ({
+            name: root.packageName,
+            version: root.packageVersion ?? '0.0.0',
+            type: root.origin,
+            checksum: checksumRoot(root),
         })),
     };
-    const lockPath = join(dirname(configPath), LOCK_FILENAME);
+    const lockPath = join(resolve(projectRoot), LOCK_FILENAME);
     writeFileSync(lockPath, serializeLock(lock));
     return { lockPath, lock };
 }
 /**
- * Find the ontology root in the config chain — the highest-level
- * ontology or profile package that the project extends.
- * Returns undefined when the chain contains no ontology/profile package
- * (e.g. the extends target could not be resolved from this directory).
+ * Hash a resolved package's descriptor.
+ *
+ * The descriptor carries name and version, which is what the lock asserts. A
+ * content hash over every `.sysml` file would be stricter but would also make
+ * the lock fail on an unrelated comment change, and "review this ontology
+ * change" is a claim that should mean something.
  */
-function findOntologyRoot(chain) {
-    // Walk from leaf toward root, find the direct extends target (profile or ontology)
-    // The last entry before the device project is the ontology root
-    for (let i = chain.length - 1; i >= 0; i--) {
-        const type = chain[i].config.projectType;
-        if (type === 'profile' || type === 'ontology') {
-            return chain[i];
-        }
+function checksumRoot(root) {
+    for (const name of ['memo.package.yaml', 'memo.package.yml']) {
+        const path = join(root.dir, name);
+        if (existsSync(path))
+            return checksumFile(path);
     }
-    return undefined;
+    return createHash('sha256').update(`${root.packageName}@${root.packageVersion ?? '0.0.0'}`).digest('hex');
 }
 /**
- * Check the lock file against the current config state.
- * Returns ok=true if the ontology matches, or if no lock file exists.
+ * Check the lock against what the project resolves now.
+ *
+ * Returns ok when there is no lock file: a lock is recommended, not required.
  */
-export function checkLockFile(configPath) {
-    const lockPath = join(dirname(configPath), LOCK_FILENAME);
-    if (!existsSync(lockPath)) {
+export function checkLockFile(projectRoot, selectedRoots) {
+    const lockPath = join(resolve(projectRoot), LOCK_FILENAME);
+    if (!existsSync(lockPath))
         return { ok: true, lockPath, message: undefined };
-    }
-    const lockContent = readFileSync(lockPath, 'utf-8');
-    const lock = parseLock(lockContent);
-    // Get current ontology identity from config chain
-    const chain = loadConfigChain(configPath);
-    const ontologyEntry = findOntologyRoot(chain);
-    const tailExtends = chain[chain.length - 1]?.config.extends;
-    const tailExtendsStr = Array.isArray(tailExtends) ? tailExtends.join('+') : tailExtends;
-    if (!ontologyEntry) {
+    const lock = parseLock(readFileSync(lockPath, 'utf-8'));
+    const byName = new Map(selectedRoots.map(r => [r.packageName, r]));
+    const primary = byName.get(lock.ontology);
+    if (!primary) {
         return {
             ok: false,
             lockPath,
             locked: lock,
-            message: `Locked ontology cannot be resolved!\n\n` +
-                `  Locked:  ${lock.ontology} v${lock.version}\n` +
-                `  Current: package "${tailExtendsStr ?? lock.ontology}" not found from this directory\n\n` +
-                `  The ontology this project was locked against is not installed here.\n` +
-                `  Install it (or run inside a workspace that contains it), then retry.`,
-        };
-    }
-    const currentOntology = ontologyEntry.config.ontologyMetadata?.id
-        || ontologyEntry.config.projectName
-        || tailExtendsStr
-        || 'unknown';
-    const currentVersion = ontologyEntry.config.ontologyMetadata?.version || '0.0.0';
-    const current = { ontology: currentOntology, version: currentVersion };
-    // Check ontology ID match
-    if (lock.ontology !== currentOntology) {
-        return {
-            ok: false,
-            lockPath,
-            locked: lock,
-            current,
-            message: `Ontology mismatch!\n\n` +
-                `  Locked:  ${lock.ontology} v${lock.version}\n` +
-                `  Current: ${currentOntology} v${currentVersion}\n\n` +
-                `  The ontology used by this project has changed since it was initialized.\n` +
-                `  In regulated medical device development, ontology changes require\n` +
-                `  explicit review — there is no auto-migration.\n\n` +
-                `  To update the lock file after reviewing the change:\n` +
-                `    memo lock\n\n` +
-                `  Or restore the original ontology if this was unintended.`,
+            message: `Locked ontology cannot be resolved!\n\n`
+                + `  Locked:  ${lock.ontology} v${lock.version}\n`
+                + `  Current: the project's imports do not resolve "${lock.ontology}" from this directory\n\n`
+                + `  Install it, or run inside a workspace that contains it, then retry.`,
         };
     }
-    // Check version match
+    const currentVersion = primary.packageVersion ?? '0.0.0';
+    const current = { ontology: lock.ontology, version: currentVersion };
     if (lock.version !== currentVersion) {
         return {
             ok: false,
             lockPath,
             locked: lock,
             current,
-            message: `Ontology version changed!\n\n` +
-                `  Locked:  ${lock.ontology} v${lock.version}\n` +
-                `  Current: ${currentOntology} v${currentVersion}\n\n` +
-                `  The ontology version has been updated since this project was initialized.\n` +
-                `  Review the changes and update the lock file:\n` +
-                `    memo lock`,
+            message: `Ontology version changed!\n\n`
+                + `  Locked:  ${lock.ontology} v${lock.version}\n`
+                + `  Current: ${lock.ontology} v${currentVersion}\n\n`
+                + `  Review the change, then update the lock:\n`
+                + `    memo lock`,
         };
     }
-    // Check package checksums for content changes
-    const currentPackages = chain
-        .filter(e => e.config.projectType !== 'device')
-        .map(e => ({
-        name: e.config.ontologyMetadata?.id || e.config.projectName,
-        checksum: checksumFile(e.configPath),
-    }));
     for (const locked of lock.packages) {
-        const current = currentPackages.find(p => p.name === locked.name);
-        if (current && current.checksum !== locked.checksum) {
+        const root = byName.get(locked.name);
+        if (!root)
+            continue;
+        if (checksumRoot(root) !== locked.checksum) {
             return {
                 ok: false,
                 lockPath,
                 locked: lock,
-                current: { ontology: currentOntology, version: currentVersion },
-                message: `Ontology package "${locked.name}" has been modified since lock was created.\n\n` +
-                    `  To update the lock file after reviewing the change:\n` +
-                    `    memo lock`,
+                current,
+                message: `Package "${locked.name}" has changed since the lock was created.\n\n`
+                    + `  Review the change, then update the lock:\n`
+                    + `    memo lock`,
             };
         }
     }

package/packages/tools/lib/lock.js.map

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package/packages/tools/lib/mcp/model-loader.d.ts

@@ -1,12 +1,15 @@
 import { findSysmlFiles } from '../model/sysml-files.js';
 import type { QueryContext } from '../dhf/query-engine.js';
 import type { MEMOConfig } from '../model/config.js';
+import { type OntologyView } from '../model/kind-registry.js';
 export { findSysmlFiles };
 export interface LoadedProject {
     ctx: QueryContext;
     config: MEMOConfig;
     projectRoot: string;
     fileCount: number;
+    /** Kinds and relationships from the resolved ontology. */
+    ontology: OntologyView;
 }
 export declare function loadProject(projectRoot: string): Promise<LoadedProject>;
 //# sourceMappingURL=model-loader.d.ts.map

package/packages/tools/lib/mcp/model-loader.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"model-loader.d.ts","sourceRoot":"","sources":["../../src/mcp/model-loader.ts"],"names":[],"mappings":"AAYA,OAAO,EAAE,cAAc,EAAE,MAAM,yBAAyB,CAAC;AAUzD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,wBAAwB,CAAC;AAC3D,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAC;AAOrD,OAAO,EAAE,cAAc,EAAE,CAAC;AAE1B,MAAM,WAAW,aAAa;IAC1B,GAAG,EAAE,YAAY,CAAC;IAClB,MAAM,EAAE,UAAU,CAAC;IACnB,WAAW,EAAE,MAAM,CAAC;IACpB,SAAS,EAAE,MAAM,CAAC;CACrB;AAwBD,wBAAsB,WAAW,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,aAAa,CAAC,CA+B7E"}
+{"version":3,"file":"model-loader.d.ts","sourceRoot":"","sources":["../../src/mcp/model-loader.ts"],"names":[],"mappings":"AAYA,OAAO,EAAE,cAAc,EAAE,MAAM,yBAAyB,CAAC;AAUzD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,wBAAwB,CAAC;AAC3D,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAC;AAErD,OAAO,EAAyC,KAAK,YAAY,EAAE,MAAM,2BAA2B,CAAC;AAMrG,OAAO,EAAE,cAAc,EAAE,CAAC;AAE1B,MAAM,WAAW,aAAa;IAC1B,GAAG,EAAE,YAAY,CAAC;IAClB,MAAM,EAAE,UAAU,CAAC;IACnB,WAAW,EAAE,MAAM,CAAC;IACpB,SAAS,EAAE,MAAM,CAAC;IAClB,0DAA0D;IAC1D,QAAQ,EAAE,YAAY,CAAC;CAC1B;AAwBD,wBAAsB,WAAW,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,aAAa,CAAC,CAoC7E"}

package/packages/tools/lib/mcp/model-loader.js

@@ -19,6 +19,7 @@ import { validateModel } from '../validator/rule-engine.js';
 import { computeCompleteness } from '../completeness/tracker.js';
 import { createQueryContext } from '../dhf/query-engine.js';
 import { loadAndResolveConfig } from '../server/config-resolver.js';
+import { EMPTY_ONTOLOGY_VIEW, ontologyViewFrom } from '../model/kind-registry.js';
 // Source discovery is the shared walker's job. This module kept its own copy
 // with a shorter skip list, which meant the MCP server saw files every other
 // entry point had already learned to ignore — a virtualenv's bundled standard
@@ -50,12 +51,15 @@ export async function loadProject(projectRoot) {
     if (!configPath) {
         throw new Error(`No MEMO project found at ${projectRoot}. Run \`memo init\` there first.`);
     }
-    const config = await loadAndResolveConfig(configPath);
+    const config = loadAndResolveConfig(configPath);
     let ontologyRegistries;
+    let ontology = EMPTY_ONTOLOGY_VIEW;
     try {
-        const loadResult = await loadOntologyRegistries(configPath);
-        if (loadResult.fileCount > 0)
+        const loadResult = await loadOntologyRegistries(projectRoot);
+        if (loadResult.fileCount > 0) {
             ontologyRegistries = loadResult.registries;
+            ontology = ontologyViewFrom(loadResult.registries.kindRegistry, loadResult.registries.relationshipRegistry);
+        }
     }
     catch {
         // A project without a resolvable ontology still has a parseable model.
@@ -63,9 +67,9 @@ export async function loadProject(projectRoot) {
     const { documents, errors: parseErrors } = await parseFiles(files, `${projectRoot}/`);
     const model = buildMemoModel(documents, config, parseErrors, ontologyRegistries);
     const validation = validateModel(model);
-    const completeness = computeCompleteness(model, validation, config);
+    const completeness = computeCompleteness(model, validation);
     const ctx = createQueryContext(model, validation, completeness, config);
-    const project = { ctx, config, projectRoot, fileCount: files.length };
+    const project = { ctx, config, ontology, projectRoot, fileCount: files.length };
     cache.set(projectRoot, { project, signature });
     return project;
 }

package/packages/tools/lib/mcp/model-loader.js.map

@@ -1 +1 @@
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package/packages/tools/lib/mcp/tools.d.ts

@@ -1,4 +1,5 @@
 import type { QueryContext } from '../dhf/query-engine.js';
+import type { OntologyView } from '../model/kind-registry.js';
 import type { MEMOConfig } from '../model/config.js';
 /** An MCP tool as advertised in `tools/list`. */
 export interface McpTool {
@@ -10,6 +11,8 @@ export interface McpToolContext {
     projectRoot: string;
     ctx: QueryContext;
     config: MEMOConfig;
+    /** Kinds and relationships from the resolved ontology. */
+    ontology: OntologyView;
 }
 export type McpToolHandler = (input: Record<string, any>, context: McpToolContext) => Promise<unknown> | unknown;
 export declare function listTools(allowWrites: boolean): McpTool[];

package/packages/tools/lib/mcp/tools.d.ts.map

@@ -1 +1 @@
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package/packages/tools/lib/mcp/tools.js

@@ -153,12 +153,11 @@ define({
     name: 'memo_ontology',
     description: 'The vocabulary this project models in: every legal element kind with its SysML v2 construct and layer, and every legal relationship type. Read this before writing or editing any .sysml file so you use terms the ontology actually defines.',
     inputSchema: { type: 'object', properties: {} },
-}, (_input, { config }) => ({
-    projectType: config.projectType,
-    kinds: Object.entries(config.kinds ?? {}).map(([name, def]) => ({
+}, (_input, { ontology }) => ({
+    kinds: Object.entries(ontology.kinds).map(([name, def]) => ({
         name, label: def.label, layer: def.layer, construct: def.sysmlConstruct,
     })),
-    relationshipTypes: (config.relationshipTypes ?? []).map(r => ({
+    relationshipTypes: ontology.relationshipTypes.map(r => ({
         name: r.name, label: r.label, layer: r.layer,
     })),
 }));
@@ -179,16 +178,16 @@ define({
         },
         required: ['id', 'name', 'kind'],
     },
-}, (input, { ctx, config, projectRoot }) => {
+}, async (input, { ctx, ontology, projectRoot }) => {
     const id = String(input.id).trim();
     const kind = String(input.kind).trim();
     if (ctx.element(id))
         throw new Error(`Element "${id}" already exists.`);
-    const kinds = config.kinds ?? {};
+    const kinds = ontology.kinds;
     if (Object.keys(kinds).length > 0 && !kinds[kind]) {
         throw new Error(`"${kind}" is not a kind in this ontology. Valid kinds: ${Object.keys(kinds).join(', ')}`);
     }
-    const result = saveElementToFile(projectRoot, {
+    const result = await saveElementToFile(projectRoot, {
         id,
         name: String(input.name),
         kind,
@@ -214,7 +213,7 @@ export async function callTool(name, input, projectRoot, allowWrites) {
     if (entry.write && !allowWrites) {
         throw new Error(`Tool "${name}" modifies the model and this server is read-only. Restart it with \`memo mcp --write\` to enable edits.`);
     }
-    const { ctx, config } = await loadProject(projectRoot);
-    return entry.handler(input ?? {}, { projectRoot, ctx, config });
+    const { ctx, config, ontology } = await loadProject(projectRoot);
+    return entry.handler(input ?? {}, { projectRoot, ctx, config, ontology });
 }
 //# sourceMappingURL=tools.js.map

package/packages/tools/lib/mcp/tools.js.map

@@ -1 +1 @@
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package/packages/tools/lib/model/activity-notation.d.ts

@@ -0,0 +1,54 @@
+import type { MemoElement } from './semantic.js';
+import type { OntologyRegistriesDTO } from './relationship-legality.js';
+/** The activity symbols an action-flow view draws. */
+export type ActivityNodeType = 'action' | 'accept' | 'send' | 'fork' | 'join' | 'decision' | 'merge' | 'activityFinal' | 'flowFinal';
+/** One notation role, anchored on the metaclass whose instances draw as it. */
+export interface ActivityNotationRole {
+    role: ActivityNodeType;
+    /** SysML v2 metaclass; every subtype of it draws as this role. */
+    metaclass: string;
+    /** Production in `bnf/SysML-graphical-bnf.kgbnf`, where one names it. */
+    bnfProduction?: string;
+}
+/**
+ * Role bindings, unordered.
+ *
+ * Deliberately not written in precedence order — `activityRolesBySpecificity()`
+ * derives that from the metamodel, so adding a binding cannot put it in the
+ * wrong place.
+ */
+export declare const ACTIVITY_NOTATION_ROLES: readonly ActivityNotationRole[];
+/**
+ * MEMO grammar literals for `ControlNodeUsage.controlKind`, bound to the
+ * metaclasses they name.
+ *
+ * The four values come from MEMO's own Langium grammar, so they are not
+ * derivable from `SysML.ecore` — but their targets are, and
+ * `controlKindMetaclassesAreControlNodes()` asserts that these four are exactly
+ * the metamodel's `ControlNode` subtypes. A fifth control node upstream fails
+ * that check rather than silently going unclassified.
+ */
+export declare const CONTROL_KIND_METACLASS: Readonly<Record<string, string>>;
+/** True when the bindings above still match the metamodel's control nodes. */
+export declare function controlKindMetaclassesAreControlNodes(): boolean;
+/**
+ * Roles most-specific first, by supertype depth.
+ *
+ * `ForkNode` sits three levels below `ActionUsage`, so it is tried first and an
+ * `ActionUsage` anchor never swallows a control node. Computed rather than
+ * declared, because the metamodel already knows the answer.
+ */
+export declare function activityRolesBySpecificity(): ActivityNotationRole[];
+/**
+ * The activity symbol this element draws as, or `undefined` if it is not an
+ * activity node at all.
+ *
+ * `registries` is optional: without it, classification uses the metamodel
+ * alone, which is what a caller holding a bare element can do. With it, an
+ * ontology kind reaches its role through its declared specialization chain —
+ * which is the path a project extends.
+ */
+export declare function activityNodeType(element: MemoElement, registries?: OntologyRegistriesDTO): ActivityNodeType | undefined;
+/** Control nodes flow through the graph but own no responsibility lane. */
+export declare function isControlNode(element: MemoElement, registries?: OntologyRegistriesDTO): boolean;
+//# sourceMappingURL=activity-notation.d.ts.map

package/packages/tools/lib/model/activity-notation.d.ts.map

@@ -0,0 +1 @@
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