@medplum/core 2.0.24 → 2.0.26

package/dist/esm/search/match.mjs

@@ -1,166 +0,0 @@
-import { globalSchema } from '../types.mjs';
-import '../utils.mjs';
-import { evalFhirPath } from '../fhirpath/parse.mjs';
-import { getSearchParameterDetails, SearchParameterType } from './details.mjs';
-import { Operator } from './search.mjs';
-
-/**
- * Determines if the resource matches the search request.
- * @param resource The resource that was created or updated.
- * @param searchRequest The subscription criteria as a search request.
- * @returns True if the resource satisfies the search request.
- */
-function matchesSearchRequest(resource, searchRequest) {
-    if (searchRequest.resourceType !== resource.resourceType) {
-        return false;
-    }
-    if (searchRequest.filters) {
-        for (const filter of searchRequest.filters) {
-            if (!matchesSearchFilter(resource, searchRequest, filter)) {
-                return false;
-            }
-        }
-    }
-    return true;
-}
-/**
- * Determines if the resource matches the search filter.
- * @param resource The resource that was created or updated.
- * @param searchRequest The search request.
- * @param filter One of the filters of a subscription criteria.
- * @returns True if the resource satisfies the search filter.
- */
-function matchesSearchFilter(resource, searchRequest, filter) {
-    const searchParam = globalSchema.types[searchRequest.resourceType].searchParams?.[filter.code];
-    switch (searchParam?.type) {
-        case 'reference':
-            return matchesReferenceFilter(resource, filter, searchParam);
-        case 'string':
-        case 'uri':
-            return matchesStringFilter(resource, filter, searchParam);
-        case 'token':
-            return matchesTokenFilter(resource, filter, searchParam);
-        case 'date':
-            return matchesDateFilter(resource, filter, searchParam);
-        default:
-            // Unknown search parameter or search parameter type
-            // Default fail the check
-            return false;
-    }
-}
-function matchesReferenceFilter(resource, filter, searchParam) {
-    const values = evalFhirPath(searchParam.expression, resource);
-    const negated = isNegated(filter.operator);
-    if (filter.value === '' && values.length === 0) {
-        // If the filter operator is "equals", then the filter matches.
-        // If the filter operator is "not equals", then the filter does not match.
-        return filter.operator === Operator.EQUALS;
-    }
-    // Normalize the values array into reference strings
-    const references = values.map((value) => (typeof value === 'string' ? value : value.reference));
-    for (const filterValue of filter.value.split(',')) {
-        let match = references.includes(filterValue);
-        if (!match && filter.code === '_compartment') {
-            // Backwards compability for compartment search parameter
-            // In previous versions, the resource type was not required in compartment values
-            // So, "123" would match "Patient/123"
-            // We need to maintain this behavior for backwards compatibility
-            match = references.some((reference) => reference?.endsWith('/' + filterValue));
-        }
-        if (match) {
-            return !negated;
-        }
-    }
-    // If "not equals" and no matches, then return true
-    // If "equals" and no matches, then return false
-    return negated;
-}
-function matchesTokenFilter(resource, filter, searchParam) {
-    const details = getSearchParameterDetails(resource.resourceType, searchParam);
-    if (details.type === SearchParameterType.BOOLEAN) {
-        return matchesBooleanFilter(resource, filter, searchParam);
-    }
-    else {
-        return matchesStringFilter(resource, filter, searchParam, true);
-    }
-}
-function matchesBooleanFilter(resource, filter, searchParam) {
-    const values = evalFhirPath(searchParam.expression, resource);
-    const expected = filter.value === 'true';
-    const result = values.includes(expected);
-    return isNegated(filter.operator) ? !result : result;
-}
-function matchesStringFilter(resource, filter, searchParam, asToken) {
-    const resourceValues = evalFhirPath(searchParam.expression, resource);
-    const filterValues = filter.value.split(',');
-    const negated = isNegated(filter.operator);
-    for (const resourceValue of resourceValues) {
-        for (const filterValue of filterValues) {
-            const match = matchesStringValue(resourceValue, filter.operator, filterValue, asToken);
-            if (match) {
-                return !negated;
-            }
-        }
-    }
-    // If "not equals" and no matches, then return true
-    // If "equals" and no matches, then return false
-    return negated;
-}
-function matchesStringValue(resourceValue, operator, filterValue, asToken) {
-    if (asToken && filterValue.includes('|')) {
-        const [system, code] = filterValue.split('|');
-        return (matchesStringValue(resourceValue, operator, system, false) &&
-            (!code || matchesStringValue(resourceValue, operator, code, false)));
-    }
-    let str = '';
-    if (resourceValue) {
-        if (typeof resourceValue === 'string') {
-            str = resourceValue;
-        }
-        else if (typeof resourceValue === 'object') {
-            str = JSON.stringify(resourceValue);
-        }
-    }
-    return str.toLowerCase().includes(filterValue.toLowerCase());
-}
-function matchesDateFilter(resource, filter, searchParam) {
-    const resourceValues = evalFhirPath(searchParam.expression, resource);
-    const filterValues = filter.value.split(',');
-    const negated = isNegated(filter.operator);
-    for (const resourceValue of resourceValues) {
-        for (const filterValue of filterValues) {
-            const match = matchesDateValue(resourceValue, filter.operator, filterValue);
-            if (match) {
-                return !negated;
-            }
-        }
-    }
-    // If "not equals" and no matches, then return true
-    // If "equals" and no matches, then return false
-    return negated;
-}
-function matchesDateValue(resourceValue, operator, filterValue) {
-    switch (operator) {
-        case Operator.STARTS_AFTER:
-        case Operator.GREATER_THAN:
-            return resourceValue > filterValue;
-        case Operator.GREATER_THAN_OR_EQUALS:
-            return resourceValue >= filterValue;
-        case Operator.ENDS_BEFORE:
-        case Operator.LESS_THAN:
-            return resourceValue < filterValue;
-        case Operator.LESS_THAN_OR_EQUALS:
-            return resourceValue <= filterValue;
-        case Operator.EQUALS:
-        case Operator.NOT_EQUALS:
-            return resourceValue === filterValue;
-        default:
-            return false;
-    }
-}
-function isNegated(operator) {
-    return operator === Operator.NOT_EQUALS || operator === Operator.NOT;
-}
-
-export { matchesSearchRequest };
-//# sourceMappingURL=match.mjs.map

package/dist/esm/search/match.mjs.map

@@ -1 +0,0 @@
-{"version":3,"file":"match.mjs","sources":["../../../src/search/match.ts"],"sourcesContent":["import { Reference, Resource, SearchParameter } from '@medplum/fhirtypes';\nimport { evalFhirPath } from '../fhirpath';\nimport { globalSchema } from '../types';\nimport { SearchParameterType, getSearchParameterDetails } from './details';\nimport { Filter, Operator, SearchRequest } from './search';\n\n/**\n * Determines if the resource matches the search request.\n * @param resource The resource that was created or updated.\n * @param searchRequest The subscription criteria as a search request.\n * @returns True if the resource satisfies the search request.\n */\nexport function matchesSearchRequest(resource: Resource, searchRequest: SearchRequest): boolean {\n  if (searchRequest.resourceType !== resource.resourceType) {\n    return false;\n  }\n  if (searchRequest.filters) {\n    for (const filter of searchRequest.filters) {\n      if (!matchesSearchFilter(resource, searchRequest, filter)) {\n        return false;\n      }\n    }\n  }\n  return true;\n}\n\n/**\n * Determines if the resource matches the search filter.\n * @param resource The resource that was created or updated.\n * @param searchRequest The search request.\n * @param filter One of the filters of a subscription criteria.\n * @returns True if the resource satisfies the search filter.\n */\nfunction matchesSearchFilter(resource: Resource, searchRequest: SearchRequest, filter: Filter): boolean {\n  const searchParam = globalSchema.types[searchRequest.resourceType].searchParams?.[filter.code];\n  switch (searchParam?.type) {\n    case 'reference':\n      return matchesReferenceFilter(resource, filter, searchParam);\n    case 'string':\n    case 'uri':\n      return matchesStringFilter(resource, filter, searchParam);\n    case 'token':\n      return matchesTokenFilter(resource, filter, searchParam);\n    case 'date':\n      return matchesDateFilter(resource, filter, searchParam);\n    default:\n      // Unknown search parameter or search parameter type\n      // Default fail the check\n      return false;\n  }\n}\n\nfunction matchesReferenceFilter(resource: Resource, filter: Filter, searchParam: SearchParameter): boolean {\n  const values = evalFhirPath(searchParam.expression as string, resource) as (Reference | string)[];\n  const negated = isNegated(filter.operator);\n\n  if (filter.value === '' && values.length === 0) {\n    // If the filter operator is \"equals\", then the filter matches.\n    // If the filter operator is \"not equals\", then the filter does not match.\n    return filter.operator === Operator.EQUALS;\n  }\n\n  // Normalize the values array into reference strings\n  const references = values.map((value) => (typeof value === 'string' ? value : value.reference));\n\n  for (const filterValue of filter.value.split(',')) {\n    let match = references.includes(filterValue);\n    if (!match && filter.code === '_compartment') {\n      // Backwards compability for compartment search parameter\n      // In previous versions, the resource type was not required in compartment values\n      // So, \"123\" would match \"Patient/123\"\n      // We need to maintain this behavior for backwards compatibility\n      match = references.some((reference) => reference?.endsWith('/' + filterValue));\n    }\n    if (match) {\n      return !negated;\n    }\n  }\n  // If \"not equals\" and no matches, then return true\n  // If \"equals\" and no matches, then return false\n  return negated;\n}\n\nfunction matchesTokenFilter(resource: Resource, filter: Filter, searchParam: SearchParameter): boolean {\n  const details = getSearchParameterDetails(resource.resourceType, searchParam);\n  if (details.type === SearchParameterType.BOOLEAN) {\n    return matchesBooleanFilter(resource, filter, searchParam);\n  } else {\n    return matchesStringFilter(resource, filter, searchParam, true);\n  }\n}\n\nfunction matchesBooleanFilter(resource: Resource, filter: Filter, searchParam: SearchParameter): boolean {\n  const values = evalFhirPath(searchParam.expression as string, resource);\n  const expected = filter.value === 'true';\n  const result = values.includes(expected);\n  return isNegated(filter.operator) ? !result : result;\n}\n\nfunction matchesStringFilter(\n  resource: Resource,\n  filter: Filter,\n  searchParam: SearchParameter,\n  asToken?: boolean\n): boolean {\n  const resourceValues = evalFhirPath(searchParam.expression as string, resource);\n  const filterValues = filter.value.split(',');\n  const negated = isNegated(filter.operator);\n  for (const resourceValue of resourceValues) {\n    for (const filterValue of filterValues) {\n      const match = matchesStringValue(resourceValue, filter.operator, filterValue, asToken);\n      if (match) {\n        return !negated;\n      }\n    }\n  }\n  // If \"not equals\" and no matches, then return true\n  // If \"equals\" and no matches, then return false\n  return negated;\n}\n\nfunction matchesStringValue(\n  resourceValue: unknown,\n  operator: Operator,\n  filterValue: string,\n  asToken?: boolean\n): boolean {\n  if (asToken && filterValue.includes('|')) {\n    const [system, code] = filterValue.split('|');\n    return (\n      matchesStringValue(resourceValue, operator, system, false) &&\n      (!code || matchesStringValue(resourceValue, operator, code, false))\n    );\n  }\n  let str = '';\n  if (resourceValue) {\n    if (typeof resourceValue === 'string') {\n      str = resourceValue;\n    } else if (typeof resourceValue === 'object') {\n      str = JSON.stringify(resourceValue);\n    }\n  }\n  return str.toLowerCase().includes(filterValue.toLowerCase());\n}\n\nfunction matchesDateFilter(resource: Resource, filter: Filter, searchParam: SearchParameter): boolean {\n  const resourceValues = evalFhirPath(searchParam.expression as string, resource);\n  const filterValues = filter.value.split(',');\n  const negated = isNegated(filter.operator);\n  for (const resourceValue of resourceValues) {\n    for (const filterValue of filterValues) {\n      const match = matchesDateValue(resourceValue as string, filter.operator, filterValue);\n      if (match) {\n        return !negated;\n      }\n    }\n  }\n  // If \"not equals\" and no matches, then return true\n  // If \"equals\" and no matches, then return false\n  return negated;\n}\n\nfunction matchesDateValue(resourceValue: string, operator: Operator, filterValue: string): boolean {\n  switch (operator) {\n    case Operator.STARTS_AFTER:\n    case Operator.GREATER_THAN:\n      return resourceValue > filterValue;\n    case Operator.GREATER_THAN_OR_EQUALS:\n      return resourceValue >= filterValue;\n    case Operator.ENDS_BEFORE:\n    case Operator.LESS_THAN:\n      return resourceValue < filterValue;\n    case Operator.LESS_THAN_OR_EQUALS:\n      return resourceValue <= filterValue;\n    case Operator.EQUALS:\n    case Operator.NOT_EQUALS:\n      return resourceValue === filterValue;\n    default:\n      return false;\n  }\n}\n\nfunction isNegated(operator: Operator): boolean {\n  return operator === Operator.NOT_EQUALS || operator === 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package/dist/esm/search/search.mjs

@@ -1,378 +0,0 @@
-import { globalSchema } from '../types.mjs';
-import { OperationOutcomeError, badRequest } from '../outcomes.mjs';
-
-const DEFAULT_SEARCH_COUNT = 20;
-/**
- * Search operators.
- * These operators represent "modifiers" and "prefixes" in FHIR search.
- * See: https://www.hl7.org/fhir/search.html
- */
-var Operator;
-(function (Operator) {
-    Operator["EQUALS"] = "eq";
-    Operator["NOT_EQUALS"] = "ne";
-    // Numbers
-    Operator["GREATER_THAN"] = "gt";
-    Operator["LESS_THAN"] = "lt";
-    Operator["GREATER_THAN_OR_EQUALS"] = "ge";
-    Operator["LESS_THAN_OR_EQUALS"] = "le";
-    // Dates
-    Operator["STARTS_AFTER"] = "sa";
-    Operator["ENDS_BEFORE"] = "eb";
-    Operator["APPROXIMATELY"] = "ap";
-    // String
-    Operator["CONTAINS"] = "contains";
-    Operator["EXACT"] = "exact";
-    // Token
-    Operator["TEXT"] = "text";
-    Operator["NOT"] = "not";
-    Operator["ABOVE"] = "above";
-    Operator["BELOW"] = "below";
-    Operator["IN"] = "in";
-    Operator["NOT_IN"] = "not-in";
-    Operator["OF_TYPE"] = "of-type";
-    // All
-    Operator["MISSING"] = "missing";
-    // Reference
-    Operator["IDENTIFIER"] = "identifier";
-    // _include and _revinclude
-    Operator["ITERATE"] = "iterate";
-})(Operator || (Operator = {}));
-/**
- * Parameter names may specify a modifier as a suffix.
- * The modifiers are separated from the parameter name by a colon.
- * See: https://www.hl7.org/fhir/search.html#modifiers
- */
-const MODIFIER_OPERATORS = {
-    contains: Operator.CONTAINS,
-    exact: Operator.EXACT,
-    above: Operator.ABOVE,
-    below: Operator.BELOW,
-    text: Operator.TEXT,
-    not: Operator.NOT,
-    in: Operator.IN,
-    'not-in': Operator.NOT_IN,
-    'of-type': Operator.OF_TYPE,
-    missing: Operator.MISSING,
-    identifier: Operator.IDENTIFIER,
-    iterate: Operator.ITERATE,
-};
-/**
- * For the ordered parameter types of number, date, and quantity,
- * a prefix to the parameter value may be used to control the nature
- * of the matching.
- * See: https://www.hl7.org/fhir/search.html#prefix
- */
-const PREFIX_OPERATORS = {
-    eq: Operator.EQUALS,
-    ne: Operator.NOT_EQUALS,
-    lt: Operator.LESS_THAN,
-    le: Operator.LESS_THAN_OR_EQUALS,
-    gt: Operator.GREATER_THAN,
-    ge: Operator.GREATER_THAN_OR_EQUALS,
-    sa: Operator.STARTS_AFTER,
-    eb: Operator.ENDS_BEFORE,
-    ap: Operator.APPROXIMATELY,
-};
-/**
- * Parses a search URL into a search request.
- * @param resourceType The FHIR resource type.
- * @param query The collection of query string parameters.
- * @returns A parsed SearchRequest.
- */
-function parseSearchRequest(resourceType, query) {
-    const queryArray = [];
-    for (const [key, value] of Object.entries(query)) {
-        if (Array.isArray(value)) {
-            for (const v of value) {
-                queryArray.push([key, v]);
-            }
-        }
-        else {
-            queryArray.push([key, value || '']);
-        }
-    }
-    return parseSearchImpl(resourceType, queryArray);
-}
-/**
- * Parses a search URL into a search request.
- * @param url The search URL.
- * @returns A parsed SearchRequest.
- */
-function parseSearchUrl(url) {
-    const resourceType = url.pathname.split('/').filter(Boolean).pop();
-    return parseSearchImpl(resourceType, url.searchParams.entries());
-}
-/**
- * Parses a URL string into a SearchRequest.
- * @param url The URL to parse.
- * @returns Parsed search definition.
- */
-function parseSearchDefinition(url) {
-    return parseSearchUrl(new URL(url, 'https://example.com/'));
-}
-/**
- * Parses a FHIR criteria string into a SearchRequest.
- * FHIR criteria strings are found on resources such as Subscription.
- * @param criteria The FHIR criteria string.
- * @returns Parsed search definition.
- */
-function parseCriteriaAsSearchRequest(criteria) {
-    return parseSearchUrl(new URL(criteria, 'https://api.medplum.com/'));
-}
-function parseSearchImpl(resourceType, query) {
-    const searchRequest = {
-        resourceType,
-    };
-    for (const [key, value] of query) {
-        parseKeyValue(searchRequest, key, value);
-    }
-    return searchRequest;
-}
-function parseKeyValue(searchRequest, key, value) {
-    let code;
-    let modifier;
-    const colonIndex = key.indexOf(':');
-    if (colonIndex >= 0) {
-        code = key.substring(0, colonIndex);
-        modifier = key.substring(colonIndex + 1);
-    }
-    else {
-        code = key;
-        modifier = '';
-    }
-    switch (code) {
-        case '_sort':
-            parseSortRule(searchRequest, value);
-            break;
-        case '_count':
-            searchRequest.count = parseInt(value, 10);
-            break;
-        case '_offset':
-            searchRequest.offset = parseInt(value, 10);
-            break;
-        case '_total':
-            searchRequest.total = value;
-            break;
-        case '_summary':
-            searchRequest.total = 'accurate';
-            searchRequest.count = 0;
-            break;
-        case '_include': {
-            const target = parseIncludeTarget(value);
-            if (modifier === 'iterate') {
-                target.modifier = Operator.ITERATE;
-            }
-            if (searchRequest.include) {
-                searchRequest.include.push(target);
-            }
-            else {
-                searchRequest.include = [target];
-            }
-            break;
-        }
-        case '_revinclude': {
-            const target = parseIncludeTarget(value);
-            if (modifier === 'iterate') {
-                target.modifier = Operator.ITERATE;
-            }
-            if (searchRequest.revInclude) {
-                searchRequest.revInclude.push(target);
-            }
-            else {
-                searchRequest.revInclude = [target];
-            }
-            break;
-        }
-        case '_fields':
-            searchRequest.fields = value.split(',');
-            break;
-        default: {
-            const param = globalSchema.types[searchRequest.resourceType]?.searchParams?.[code];
-            if (param) {
-                parseParameter(searchRequest, param, modifier, value);
-            }
-            else {
-                parseUnknownParameter(searchRequest, code, modifier, value);
-            }
-        }
-    }
-}
-function parseSortRule(searchRequest, value) {
-    for (const field of value.split(',')) {
-        let code;
-        let descending = false;
-        if (field.startsWith('-')) {
-            code = field.substring(1);
-            descending = true;
-        }
-        else {
-            code = field;
-        }
-        if (!searchRequest.sortRules) {
-            searchRequest.sortRules = [];
-        }
-        searchRequest.sortRules.push({ code, descending });
-    }
-}
-function parseParameter(searchRequest, searchParam, modifier, value) {
-    if (modifier === 'missing') {
-        addFilter(searchRequest, {
-            code: searchParam.code,
-            operator: Operator.MISSING,
-            value,
-        });
-        return;
-    }
-    switch (searchParam.type) {
-        case 'number':
-        case 'date':
-            parsePrefixType(searchRequest, searchParam, value);
-            break;
-        case 'reference':
-        case 'string':
-        case 'token':
-        case 'uri':
-            parseModifierType(searchRequest, searchParam, modifier, value);
-            break;
-        case 'quantity':
-            parseQuantity(searchRequest, searchParam, value);
-            break;
-    }
-}
-function parsePrefixType(searchRequest, param, input) {
-    const { operator, value } = parsePrefix(input);
-    addFilter(searchRequest, {
-        code: param.code,
-        operator,
-        value,
-    });
-}
-function parseModifierType(searchRequest, param, modifier, value) {
-    addFilter(searchRequest, {
-        code: param.code,
-        operator: parseModifier(modifier),
-        value,
-    });
-}
-function parseQuantity(searchRequest, param, input) {
-    const [prefixNumber, unitSystem, unitCode] = input.split('|');
-    const { operator, value } = parsePrefix(prefixNumber);
-    addFilter(searchRequest, {
-        code: param.code,
-        operator,
-        value,
-        unitSystem,
-        unitCode,
-    });
-}
-function parseUnknownParameter(searchRequest, code, modifier, value) {
-    let operator = Operator.EQUALS;
-    if (modifier) {
-        operator = modifier;
-    }
-    else if (value.length >= 2) {
-        const prefix = value.substring(0, 2);
-        if (prefix in PREFIX_OPERATORS) {
-            if (value.length === 2 || value.at(2)?.match(/\d/)) {
-                operator = prefix;
-                value = value.substring(prefix.length);
-            }
-        }
-    }
-    addFilter(searchRequest, {
-        code,
-        operator,
-        value,
-    });
-}
-function parsePrefix(input) {
-    const prefix = input.substring(0, 2);
-    const prefixOperator = PREFIX_OPERATORS[prefix];
-    if (prefixOperator) {
-        return { operator: prefixOperator, value: input.substring(2) };
-    }
-    return { operator: Operator.EQUALS, value: input };
-}
-function parseModifier(modifier) {
-    return MODIFIER_OPERATORS[modifier] || Operator.EQUALS;
-}
-function parseIncludeTarget(input) {
-    const parts = input.split(':');
-    parts.forEach((p) => {
-        if (p === '*') {
-            throw new OperationOutcomeError(badRequest(`'*' is not supported as a value for search inclusion parameters`));
-        }
-    });
-    if (parts.length === 1) {
-        // Full wildcard, not currently supported
-        throw new OperationOutcomeError(badRequest(`Invalid include value '${input}': must be of the form ResourceType:search-parameter`));
-    }
-    else if (parts.length === 2) {
-        return {
-            resourceType: parts[0],
-            searchParam: parts[1],
-        };
-    }
-    else if (parts.length === 3) {
-        return {
-            resourceType: parts[0],
-            searchParam: parts[1],
-            targetType: parts[2],
-        };
-    }
-    else {
-        throw new OperationOutcomeError(badRequest(`Invalid include value '${input}'`));
-    }
-}
-function addFilter(searchRequest, filter) {
-    if (searchRequest.filters) {
-        searchRequest.filters.push(filter);
-    }
-    else {
-        searchRequest.filters = [filter];
-    }
-}
-/**
- * Formats a search definition object into a query string.
- * Note: The return value does not include the resource type.
- * @param definition The search definition.
- * @returns Formatted URL.
- */
-function formatSearchQuery(definition) {
-    const params = [];
-    if (definition.fields) {
-        params.push('_fields=' + definition.fields.join(','));
-    }
-    if (definition.filters) {
-        definition.filters.forEach((filter) => params.push(formatFilter(filter)));
-    }
-    if (definition.sortRules && definition.sortRules.length > 0) {
-        params.push(formatSortRules(definition.sortRules));
-    }
-    if (definition.offset !== undefined) {
-        params.push('_offset=' + definition.offset);
-    }
-    if (definition.count !== undefined) {
-        params.push('_count=' + definition.count);
-    }
-    if (definition.total !== undefined) {
-        params.push('_total=' + definition.total);
-    }
-    if (params.length === 0) {
-        return '';
-    }
-    params.sort();
-    return '?' + params.join('&');
-}
-function formatFilter(filter) {
-    const modifier = filter.operator in MODIFIER_OPERATORS ? ':' + filter.operator : '';
-    const prefix = filter.operator !== Operator.EQUALS && filter.operator in PREFIX_OPERATORS ? filter.operator : '';
-    return `${filter.code}${modifier}=${prefix}${encodeURIComponent(filter.value)}`;
-}
-function formatSortRules(sortRules) {
-    return '_sort=' + sortRules.map((sr) => (sr.descending ? '-' + sr.code : sr.code)).join(',');
-}
-
-export { DEFAULT_SEARCH_COUNT, Operator, formatSearchQuery, parseCriteriaAsSearchRequest, parseSearchDefinition, parseSearchRequest, parseSearchUrl };
-//# sourceMappingURL=search.mjs.map

package/dist/esm/search/search.mjs.map

@@ -1 +0,0 @@
-{"version":3,"file":"search.mjs","sources":["../../../src/search/search.ts"],"sourcesContent":["import { Resource, ResourceType, SearchParameter } from '@medplum/fhirtypes';\nimport { globalSchema } from '../types';\nimport { OperationOutcomeError, badRequest } from '../outcomes';\n\nexport const DEFAULT_SEARCH_COUNT = 20;\n\nexport interface SearchRequest<T extends Resource = Resource> {\n  readonly resourceType: T['resourceType'];\n  filters?: Filter[];\n  sortRules?: SortRule[];\n  offset?: number;\n  count?: number;\n  fields?: string[];\n  name?: string;\n  total?: 'none' | 'estimate' | 'accurate';\n  include?: IncludeTarget[];\n  revInclude?: IncludeTarget[];\n}\n\nexport interface Filter {\n  code: string;\n  operator: Operator;\n  value: string;\n  unitSystem?: string;\n  unitCode?: string;\n}\n\nexport interface SortRule {\n  code: string;\n  descending?: boolean;\n}\n\nexport interface IncludeTarget {\n  resourceType: string;\n  searchParam: string;\n  targetType?: string;\n  modifier?: string;\n}\n\n/**\n * Search operators.\n * These operators represent \"modifiers\" and \"prefixes\" in FHIR search.\n * See: https://www.hl7.org/fhir/search.html\n */\nexport enum Operator {\n  EQUALS = 'eq',\n  NOT_EQUALS = 'ne',\n\n  // Numbers\n  GREATER_THAN = 'gt',\n  LESS_THAN = 'lt',\n  GREATER_THAN_OR_EQUALS = 'ge',\n  LESS_THAN_OR_EQUALS = 'le',\n\n  // Dates\n  STARTS_AFTER = 'sa',\n  ENDS_BEFORE = 'eb',\n  APPROXIMATELY = 'ap',\n\n  // String\n  CONTAINS = 'contains',\n  EXACT = 'exact',\n\n  // Token\n  TEXT = 'text',\n  NOT = 'not',\n  ABOVE = 'above',\n  BELOW = 'below',\n  IN = 'in',\n  NOT_IN = 'not-in',\n  OF_TYPE = 'of-type',\n\n  // All\n  MISSING = 'missing',\n\n  // Reference\n  IDENTIFIER = 'identifier',\n\n  // _include and _revinclude\n  ITERATE = 'iterate',\n}\n\n/**\n * Parameter names may specify a modifier as a suffix.\n * The modifiers are separated from the parameter name by a colon.\n * See: https://www.hl7.org/fhir/search.html#modifiers\n */\nconst MODIFIER_OPERATORS: Record<string, Operator> = {\n  contains: Operator.CONTAINS,\n  exact: Operator.EXACT,\n  above: Operator.ABOVE,\n  below: Operator.BELOW,\n  text: Operator.TEXT,\n  not: Operator.NOT,\n  in: Operator.IN,\n  'not-in': Operator.NOT_IN,\n  'of-type': Operator.OF_TYPE,\n  missing: Operator.MISSING,\n  identifier: Operator.IDENTIFIER,\n  iterate: Operator.ITERATE,\n};\n\n/**\n * For the ordered parameter types of number, date, and quantity,\n * a prefix to the parameter value may be used to control the nature\n * of the matching.\n * See: https://www.hl7.org/fhir/search.html#prefix\n */\nconst PREFIX_OPERATORS: Record<string, Operator> = {\n  eq: Operator.EQUALS,\n  ne: Operator.NOT_EQUALS,\n  lt: Operator.LESS_THAN,\n  le: Operator.LESS_THAN_OR_EQUALS,\n  gt: Operator.GREATER_THAN,\n  ge: Operator.GREATER_THAN_OR_EQUALS,\n  sa: Operator.STARTS_AFTER,\n  eb: Operator.ENDS_BEFORE,\n  ap: Operator.APPROXIMATELY,\n};\n\n/**\n * Parses a search URL into a search request.\n * @param resourceType The FHIR resource type.\n * @param query The collection of query string parameters.\n * @returns A parsed SearchRequest.\n */\nexport function parseSearchRequest<T extends Resource = Resource>(\n  resourceType: T['resourceType'],\n  query: Record<string, string[] | string | undefined>\n): SearchRequest<T> {\n  const queryArray: [string, string][] = [];\n  for (const [key, value] of Object.entries(query)) {\n    if (Array.isArray(value)) {\n      for (const v of value) {\n        queryArray.push([key, v]);\n      }\n    } else {\n      queryArray.push([key, value || '']);\n    }\n  }\n  return parseSearchImpl(resourceType, queryArray);\n}\n\n/**\n * Parses a search URL into a search request.\n * @param url The search URL.\n * @returns A parsed SearchRequest.\n */\nexport function parseSearchUrl<T extends Resource = Resource>(url: URL): SearchRequest<T> {\n  const resourceType = url.pathname.split('/').filter(Boolean).pop() as ResourceType;\n  return parseSearchImpl<T>(resourceType, url.searchParams.entries());\n}\n\n/**\n * Parses a URL string into a SearchRequest.\n * @param url The URL to parse.\n * @returns Parsed search definition.\n */\nexport function parseSearchDefinition<T extends Resource = Resource>(url: string): SearchRequest<T> {\n  return parseSearchUrl<T>(new URL(url, 'https://example.com/'));\n}\n\n/**\n * Parses a FHIR criteria string into a SearchRequest.\n * FHIR criteria strings are found on resources such as Subscription.\n * @param criteria The FHIR criteria string.\n * @returns Parsed search definition.\n */\nexport function parseCriteriaAsSearchRequest(criteria: string): SearchRequest {\n  return parseSearchUrl(new URL(criteria, 'https://api.medplum.com/'));\n}\n\nfunction parseSearchImpl<T extends Resource = Resource>(\n  resourceType: T['resourceType'],\n  query: [string, string][] | IterableIterator<[string, string]>\n): SearchRequest<T> {\n  const searchRequest: SearchRequest<T> = {\n    resourceType,\n  };\n\n  for (const [key, value] of query) {\n    parseKeyValue(searchRequest, key, value);\n  }\n\n  return searchRequest;\n}\n\nfunction parseKeyValue(searchRequest: SearchRequest, key: string, value: string): void {\n  let code;\n  let modifier;\n\n  const colonIndex = key.indexOf(':');\n  if (colonIndex >= 0) {\n    code = key.substring(0, colonIndex);\n    modifier = key.substring(colonIndex + 1);\n  } else {\n    code = key;\n    modifier = '';\n  }\n\n  switch (code) {\n    case '_sort':\n      parseSortRule(searchRequest, value);\n      break;\n\n    case '_count':\n      searchRequest.count = parseInt(value, 10);\n      break;\n\n    case '_offset':\n      searchRequest.offset = parseInt(value, 10);\n      break;\n\n    case '_total':\n      searchRequest.total = value as 'none' | 'estimate' | 'accurate';\n      break;\n\n    case '_summary':\n      searchRequest.total = 'accurate';\n      searchRequest.count = 0;\n      break;\n\n    case '_include': {\n      const target = parseIncludeTarget(value);\n      if (modifier === 'iterate') {\n        target.modifier = Operator.ITERATE;\n      }\n      if (searchRequest.include) {\n        searchRequest.include.push(target);\n      } else {\n        searchRequest.include = [target];\n      }\n      break;\n    }\n\n    case '_revinclude': {\n      const target = parseIncludeTarget(value);\n      if (modifier === 'iterate') {\n        target.modifier = Operator.ITERATE;\n      }\n      if (searchRequest.revInclude) {\n        searchRequest.revInclude.push(target);\n      } else {\n        searchRequest.revInclude = [target];\n      }\n      break;\n    }\n\n    case '_fields':\n      searchRequest.fields = value.split(',');\n      break;\n\n    default: {\n      const param = globalSchema.types[searchRequest.resourceType]?.searchParams?.[code];\n      if (param) {\n        parseParameter(searchRequest, param, modifier, value);\n      } else {\n        parseUnknownParameter(searchRequest, code, modifier, value);\n      }\n    }\n  }\n}\n\nfunction parseSortRule(searchRequest: SearchRequest, value: string): void {\n  for (const field of value.split(',')) {\n    let code;\n    let descending = false;\n    if (field.startsWith('-')) {\n      code = field.substring(1);\n      descending = true;\n    } else {\n      code = field;\n    }\n    if (!searchRequest.sortRules) {\n      searchRequest.sortRules = [];\n    }\n    searchRequest.sortRules.push({ code, descending });\n  }\n}\n\nfunction parseParameter(\n  searchRequest: SearchRequest,\n  searchParam: SearchParameter,\n  modifier: string,\n  value: string\n): void {\n  if (modifier === 'missing') {\n    addFilter(searchRequest, {\n      code: searchParam.code as string,\n      operator: Operator.MISSING,\n      value,\n    });\n    return;\n  }\n  switch (searchParam.type) {\n    case 'number':\n    case 'date':\n      parsePrefixType(searchRequest, searchParam, value);\n      break;\n    case 'reference':\n    case 'string':\n    case 'token':\n    case 'uri':\n      parseModifierType(searchRequest, searchParam, modifier, value);\n      break;\n    case 'quantity':\n      parseQuantity(searchRequest, searchParam, value);\n      break;\n    default:\n      break;\n  }\n}\n\nfunction parsePrefixType(searchRequest: SearchRequest, param: SearchParameter, input: string): void {\n  const { operator, value } = parsePrefix(input);\n  addFilter(searchRequest, {\n    code: param.code as string,\n    operator,\n    value,\n  });\n}\n\nfunction parseModifierType(\n  searchRequest: SearchRequest,\n  param: SearchParameter,\n  modifier: string,\n  value: string\n): void {\n  addFilter(searchRequest, {\n    code: param.code as string,\n    operator: parseModifier(modifier),\n    value,\n  });\n}\n\nfunction parseQuantity(searchRequest: SearchRequest, param: SearchParameter, input: string): void {\n  const [prefixNumber, unitSystem, unitCode] = input.split('|');\n  const { operator, value } = parsePrefix(prefixNumber);\n  addFilter(searchRequest, {\n    code: param.code as string,\n    operator,\n    value,\n    unitSystem,\n    unitCode,\n  });\n}\n\nfunction parseUnknownParameter(searchRequest: SearchRequest, code: string, modifier: string, value: string): void {\n  let operator = Operator.EQUALS;\n  if (modifier) {\n    operator = modifier as Operator;\n  } else if (value.length >= 2) {\n    const prefix = value.substring(0, 2);\n    if (prefix in PREFIX_OPERATORS) {\n      if (value.length === 2 || value.at(2)?.match(/\\d/)) {\n        operator = prefix as Operator;\n        value = value.substring(prefix.length);\n      }\n    }\n  }\n\n  addFilter(searchRequest, {\n    code,\n    operator,\n    value,\n  });\n}\n\nfunction parsePrefix(input: string): { operator: Operator; value: string } {\n  const prefix = input.substring(0, 2);\n  const prefixOperator = PREFIX_OPERATORS[prefix];\n  if (prefixOperator) {\n    return { operator: prefixOperator, value: input.substring(2) };\n  }\n  return { operator: Operator.EQUALS, value: input };\n}\n\nfunction parseModifier(modifier: string): Operator {\n  return MODIFIER_OPERATORS[modifier] || Operator.EQUALS;\n}\n\nfunction parseIncludeTarget(input: string): IncludeTarget {\n  const parts = input.split(':');\n\n  parts.forEach((p) => {\n    if (p === '*') {\n      throw new OperationOutcomeError(badRequest(`'*' is not supported as a value for search inclusion parameters`));\n    }\n  });\n\n  if (parts.length === 1) {\n    // Full wildcard, not currently supported\n    throw new OperationOutcomeError(\n      badRequest(`Invalid include value '${input}': must be of the form ResourceType:search-parameter`)\n    );\n  } else if (parts.length === 2) {\n    return {\n      resourceType: parts[0],\n      searchParam: parts[1],\n    };\n  } else if (parts.length === 3) {\n    return {\n      resourceType: parts[0],\n      searchParam: parts[1],\n      targetType: parts[2],\n    };\n  } else {\n    throw new OperationOutcomeError(badRequest(`Invalid include value '${input}'`));\n  }\n}\n\nfunction addFilter(searchRequest: SearchRequest, filter: Filter): void {\n  if (searchRequest.filters) {\n    searchRequest.filters.push(filter);\n  } else {\n    searchRequest.filters = [filter];\n  }\n}\n\n/**\n * Formats a search definition object into a query string.\n * Note: The return value does not include the resource type.\n * @param definition The search definition.\n * @returns Formatted URL.\n */\nexport function formatSearchQuery(definition: SearchRequest): string {\n  const params: string[] = [];\n\n  if (definition.fields) {\n    params.push('_fields=' + definition.fields.join(','));\n  }\n\n  if (definition.filters) {\n    definition.filters.forEach((filter) => params.push(formatFilter(filter)));\n  }\n\n  if (definition.sortRules && definition.sortRules.length > 0) {\n    params.push(formatSortRules(definition.sortRules));\n  }\n\n  if (definition.offset !== undefined) {\n    params.push('_offset=' + definition.offset);\n  }\n\n  if (definition.count !== undefined) {\n    params.push('_count=' + definition.count);\n  }\n\n  if (definition.total !== undefined) {\n    params.push('_total=' + definition.total);\n  }\n\n  if (params.length === 0) {\n    return '';\n  }\n\n  params.sort();\n  return '?' + params.join('&');\n}\n\nfunction formatFilter(filter: Filter): string {\n  const modifier = filter.operator in MODIFIER_OPERATORS ? ':' + filter.operator : '';\n  const prefix = filter.operator !== Operator.EQUALS && filter.operator in PREFIX_OPERATORS ? filter.operator : '';\n  return `${filter.code}${modifier}=${prefix}${encodeURIComponent(filter.value)}`;\n}\n\nfunction formatSortRules(sortRules: SortRule[]): string {\n  return '_sort=' + sortRules.map((sr) => (sr.descending ? '-' + sr.code : 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package/dist/esm/sftp.mjs

@@ -1,24 +0,0 @@
-/**
- * Reads data from a Readable stream and returns a Promise that resolves with a Buffer containing all the data.
- * @param stream - The Readable stream to read from.
- * @returns A Promise that resolves with a Buffer containing all the data from the Readable stream.
- */
-function streamToBuffer(stream) {
-    const chunks = [];
-    return new Promise((resolve, reject) => {
-        stream.on('data', (chunk) => chunks.push(Buffer.from(chunk)));
-        stream.on('error', (err) => {
-            stream.destroy();
-            reject(err);
-        });
-        stream.on('end', () => {
-            resolve(Buffer.concat(chunks));
-        });
-        stream.on('close', () => {
-            stream.destroy();
-        });
-    });
-}
-
-export { streamToBuffer };
-//# sourceMappingURL=sftp.mjs.map

package/dist/esm/sftp.mjs.map

@@ -1 +0,0 @@
-{"version":3,"file":"sftp.mjs","sources":["../../src/sftp.ts"],"sourcesContent":["import { Readable } from 'stream';\n\n/**\n * Reads data from a Readable stream and returns a Promise that resolves with a Buffer containing all the data.\n * @param stream - The Readable stream to read from.\n * @returns A Promise that resolves with a Buffer containing all the data from the Readable stream.\n */\nexport function streamToBuffer(stream: Readable): Promise<Buffer> {\n  const chunks: Uint8Array[] = [];\n  return new Promise<Buffer>((resolve, reject) => {\n    stream.on('data', (chunk: Uint8Array) => chunks.push(Buffer.from(chunk)));\n    stream.on('error', (err: Error) => {\n      stream.destroy();\n      reject(err);\n    });\n    stream.on('end', () => {\n      resolve(Buffer.concat(chunks));\n    });\n    stream.on('close', () => {\n      stream.destroy();\n    });\n  });\n}\n"],"names":[],"mappings":"AAEA;;;;AAIG;AACG,SAAU,cAAc,CAAC,MAAgB,EAAA;IAC7C,MAAM,MAAM,GAAiB,EAAE,CAAC;IAChC,OAAO,IAAI,OAAO,CAAS,CAAC,OAAO,EAAE,MAAM,KAAI;QAC7C,MAAM,CAAC,EAAE,CAAC,MAAM,EAAE,CAAC,KAAiB,KAAK,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QAC1E,MAAM,CAAC,EAAE,CAAC,OAAO,EAAE,CAAC,GAAU,KAAI;YAChC,MAAM,CAAC,OAAO,EAAE,CAAC;YACjB,MAAM,CAAC,GAAG,CAAC,CAAC;AACd,SAAC,CAAC,CAAC;AACH,QAAA,MAAM,CAAC,EAAE,CAAC,KAAK,EAAE,MAAK;YACpB,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC;AACjC,SAAC,CAAC,CAAC;AACH,QAAA,MAAM,CAAC,EAAE,CAAC,OAAO,EAAE,MAAK;YACtB,MAAM,CAAC,OAAO,EAAE,CAAC;AACnB,SAAC,CAAC,CAAC;AACL,KAAC,CAAC,CAAC;AACL;;;;"}