@medplum/core 2.0.24 → 2.0.25

package/dist/esm/typeschema/types.mjs

@@ -1,278 +0,0 @@
-import '../types.mjs';
-import { capitalize, isEmpty } from '../utils.mjs';
-import { getTypedPropertyValue } from '../fhirpath/utils.mjs';
-import '../fhirpath/parse.mjs';
-import { OperationOutcomeError, serverError } from '../outcomes.mjs';
-
-/**
- * Parses a StructureDefinition resource into an internal schema better suited for
- * programmatic validation and usage in internal systems
- * @param sd The StructureDefinition resource to parse
- * @returns The parsed schema for the given resource type
- * @experimental
- */
-function parseStructureDefinition(sd) {
-    return new StructureDefinitionParser(sd).parse();
-}
-const DATA_TYPES = Object.create(null);
-function loadDataTypes(bundle) {
-    for (const { resource: sd } of bundle.entry ?? []) {
-        if (!sd?.name) {
-            throw new Error(`Failed loading StructureDefinition from bundle`);
-        }
-        if (sd.resourceType !== 'StructureDefinition') {
-            continue;
-        }
-        const schema = parseStructureDefinition(sd);
-        DATA_TYPES[sd.name] = schema;
-        for (const inner of schema.innerTypes) {
-            DATA_TYPES[inner.name] = inner;
-        }
-    }
-}
-function getDataType(type) {
-    const schema = DATA_TYPES[type];
-    if (!schema) {
-        throw new OperationOutcomeError(serverError(Error('Unknown data type: ' + type)));
-    }
-    return schema;
-}
-/**
- * @experimental
- */
-class StructureDefinitionParser {
-    /**
-     * @param sd The StructureDefinition to parse
-     * @throws Throws when the StructureDefinition does not have a populated `snapshot` field
-     */
-    constructor(sd) {
-        if (!sd.snapshot?.element || sd.snapshot.element.length === 0) {
-            throw new Error(`No snapshot defined for StructureDefinition '${sd.name}'`);
-        }
-        const root = sd.snapshot.element[0];
-        this.elements = sd.snapshot.element.slice(1);
-        this.elementIndex = Object.create(null);
-        this.index = 0;
-        this.resourceSchema = {
-            name: sd.type,
-            fields: {},
-            constraints: this.parseFieldDefinition(root).constraints,
-            innerTypes: [],
-        };
-        this.innerTypes = [];
-    }
-    parse() {
-        let element = this.next();
-        while (element) {
-            if (element.sliceName) {
-                // Start of slice: this ElementDefinition defines the top-level element of a slice value
-                this.parseSliceStart(element);
-            }
-            else if (element.id?.includes(':')) {
-                // Slice element, part of some slice definition
-                if (this.slicingContext?.current) {
-                    const path = elementPath(element, this.slicingContext.path);
-                    this.slicingContext.current.fields[path] = this.parseFieldDefinition(element);
-                }
-            }
-            else {
-                // Normal field definition
-                const field = this.parseFieldDefinition(element);
-                this.checkFieldEnter(element, field);
-                // Record field in schema
-                if (this.backboneContext && element.path?.startsWith(this.backboneContext.path + '.')) {
-                    this.backboneContext.type.fields[elementPath(element, this.backboneContext.path)] = field;
-                }
-                else if (this.backboneContext?.parent && element.path?.startsWith(this.backboneContext.parent.path + '.')) {
-                    this.backboneContext.parent.type.fields[elementPath(element, this.backboneContext.parent.path)] = field;
-                }
-                else {
-                    this.resourceSchema.fields[elementPath(element, this.resourceSchema.name)] = field;
-                }
-                // Clean up contextual book-keeping
-                this.checkFieldExit(element);
-            }
-            element = this.next();
-        }
-        // Wrap up if the StructureDefinition ends on a slice or backbone element
-        this.checkFieldExit();
-        if (this.innerTypes.length > 0) {
-            this.resourceSchema.innerTypes = this.innerTypes;
-        }
-        return this.resourceSchema;
-    }
-    checkFieldEnter(element, field) {
-        if (this.isInnerType(element)) {
-            while (this.backboneContext && !pathsCompatible(this.backboneContext?.path, element.path)) {
-                // Starting new inner type, unwind type stack to this property's parent
-                this.innerTypes.push(this.backboneContext.type);
-                this.backboneContext = this.backboneContext.parent;
-            }
-            this.backboneContext = {
-                type: {
-                    name: buildTypeName(element.path?.split('.') ?? []),
-                    fields: {},
-                    constraints: this.parseFieldDefinition(element).constraints,
-                    innerTypes: [],
-                },
-                path: element.path ?? '',
-                parent: pathsCompatible(this.backboneContext?.path, element.path)
-                    ? this.backboneContext
-                    : this.backboneContext?.parent,
-            };
-        }
-        if (element.slicing && !this.slicingContext) {
-            field.slicing = {
-                discriminator: (element.slicing?.discriminator ?? []).map((d) => ({
-                    path: d.path,
-                    type: d.type,
-                })),
-                slices: [],
-                ordered: element.slicing?.ordered ?? false,
-                rule: element.slicing?.rules,
-            };
-            this.slicingContext = { field: field.slicing, path: element.path ?? '' };
-        }
-    }
-    checkFieldExit(element = undefined) {
-        if (this.backboneContext && !pathsCompatible(this.backboneContext.path, element?.path)) {
-            // Leaving BackboneElement child fields
-            if (this.backboneContext.parent) {
-                do {
-                    this.innerTypes.push(this.backboneContext.type);
-                    this.backboneContext = this.backboneContext.parent;
-                } while (this.backboneContext && !pathsCompatible(this.backboneContext.path, element?.path));
-            }
-            else {
-                this.innerTypes.push(this.backboneContext.type);
-                delete this.backboneContext;
-            }
-        }
-        if (this.slicingContext && !pathsCompatible(this.slicingContext.path, element?.path)) {
-            // Path must be compatible with the sliced field path (i.e. have it as a prefix) to be a part of the
-            // same slice group; otherwise, that group is finished and this is the start of a new field
-            if (this.slicingContext?.current) {
-                this.slicingContext.field.slices.push(this.slicingContext.current);
-            }
-            delete this.slicingContext;
-        }
-    }
-    next() {
-        const element = this.peek();
-        if (element) {
-            this.index++;
-            return element;
-        }
-        return undefined;
-    }
-    peek() {
-        const element = this.elements[this.index];
-        if (element) {
-            this.elementIndex[element.path ?? ''] = element;
-            if (element.contentReference) {
-                const ref = this.elementIndex[element.contentReference.slice(element.contentReference.indexOf('#') + 1)];
-                if (!ref) {
-                    return undefined;
-                }
-                return {
-                    ...ref,
-                    id: element.id,
-                    path: element.path,
-                };
-            }
-            return element;
-        }
-        return undefined;
-    }
-    isInnerType(current) {
-        const next = this.peek();
-        return !!(pathsCompatible(current?.path, next?.path) &&
-            current.type?.some((t) => ['BackboneElement', 'Element'].includes(t.code)));
-    }
-    parseSliceStart(element) {
-        if (!this.slicingContext) {
-            throw new Error('Invalid slice start before discriminator');
-        }
-        if (this.slicingContext.current) {
-            this.slicingContext.field.slices.push(this.slicingContext.current);
-        }
-        this.slicingContext.current = {
-            name: element.sliceName ?? '',
-            fields: {},
-            min: element.min ?? 0,
-            max: element.max === '*' ? Number.POSITIVE_INFINITY : Number.parseInt(element.max, 10),
-        };
-    }
-    parseFieldDefinition(ed) {
-        const max = parseCardinality(ed.max);
-        const baseMax = ed.base?.max ? parseCardinality(ed.base.max) : max;
-        const typedElementDef = { type: 'ElementDefinition', value: ed };
-        return {
-            min: ed.min ?? 0,
-            max: max,
-            isArray: baseMax > 1,
-            constraints: (ed.constraint ?? []).map((c) => ({
-                key: c.key ?? '',
-                severity: c.severity ?? 'error',
-                expression: c.expression ?? '',
-                description: c.human ?? '',
-            })),
-            type: (ed.type ?? []).map((t) => ({
-                code: ['BackboneElement', 'Element'].includes(t.code)
-                    ? buildTypeName(ed.base?.path?.split('.') ?? [])
-                    : t.code ?? '',
-                targetProfile: t.targetProfile ?? [],
-            })),
-            fixed: firstValue(getTypedPropertyValue(typedElementDef, 'fixed')),
-            pattern: firstValue(getTypedPropertyValue(typedElementDef, 'pattern')),
-            binding: ed.binding?.strength === 'required' ? ed.binding.valueSet : undefined,
-        };
-    }
-}
-function parseCardinality(c) {
-    return c === '*' ? Number.POSITIVE_INFINITY : Number.parseInt(c, 10);
-}
-function elementPath(element, prefix = '') {
-    return trimPrefix(element.path, prefix);
-}
-function trimPrefix(str, prefix) {
-    if (!str) {
-        return '';
-    }
-    if (prefix && str.startsWith(prefix)) {
-        return str.substring(prefix.length + 1);
-    }
-    return str;
-}
-/**
- * Tests whether two element paths are compatible, i.e. whether the child path is nested under the parent.
- * @param parent The expected parent path, which should be a prefix of the child path.
- * @param child The child path to test for compatibility with the parent path.
- * @returns True if the given path is a child of the parent.
- */
-function pathsCompatible(parent, child) {
-    if (!parent || !child) {
-        return false;
-    }
-    return child.startsWith(parent + '.') || child === parent;
-}
-function buildTypeName(components) {
-    if (components.length === 1) {
-        return components[0];
-    }
-    return components.map(capitalize).join('');
-}
-function firstValue(obj) {
-    if (Array.isArray(obj) && obj.length > 0) {
-        return obj[0];
-    }
-    else if (!isEmpty(obj)) {
-        return obj;
-    }
-    else {
-        return undefined;
-    }
-}
-
-export { getDataType, loadDataTypes, parseStructureDefinition };
-//# sourceMappingURL=types.mjs.map

package/dist/esm/typeschema/types.mjs.map

@@ -1 +0,0 @@
-{"version":3,"file":"types.mjs","sources":["../../../src/typeschema/types.ts"],"sourcesContent":["import { Bundle, ElementDefinition, ResourceType, StructureDefinition } from '@medplum/fhirtypes';\nimport { getTypedPropertyValue } from '../fhirpath';\nimport { OperationOutcomeError, serverError } from '../outcomes';\nimport { TypedValue } from '../types';\nimport { capitalize, isEmpty } from '../utils';\n\n/**\n * Internal representation of a non-primitive FHIR type, suitable for use in resource validation\n */\nexport interface InternalTypeSchema {\n  name: string;\n  fields: Record<string, ElementValidator>;\n  constraints: Constraint[];\n  innerTypes: InternalTypeSchema[];\n}\n\nexport interface ElementValidator {\n  min: number;\n  max: number;\n  isArray: boolean;\n  constraints: Constraint[];\n  type: ElementType[];\n  slicing?: SlicingRules;\n  fixed?: TypedValue;\n  pattern?: TypedValue;\n  binding?: string;\n}\n\nexport interface ElementType {\n  code: string;\n  targetProfile: string[];\n}\n\nexport interface Constraint {\n  key: string;\n  severity: 'error' | 'warning';\n  expression: string;\n  description: string;\n}\n\nexport interface SlicingRules {\n  discriminator: SliceDiscriminator[];\n  ordered: boolean;\n  rule?: 'open' | 'closed' | 'openAtEnd';\n  slices: SliceDefinition[];\n}\n\nexport interface SliceDefinition {\n  name: string;\n  fields: Record<string, ElementValidator>;\n  min: number;\n  max: number;\n}\n\nexport interface SliceDiscriminator {\n  path: string;\n  type: string;\n}\n\n/**\n * Parses a StructureDefinition resource into an internal schema better suited for\n * programmatic validation and usage in internal systems\n * @param sd The StructureDefinition resource to parse\n * @returns The parsed schema for the given resource type\n * @experimental\n */\nexport function parseStructureDefinition(sd: StructureDefinition): InternalTypeSchema {\n  return new StructureDefinitionParser(sd).parse();\n}\n\nconst DATA_TYPES: Record<string, InternalTypeSchema> = Object.create(null);\n\nexport function loadDataTypes(bundle: Bundle<StructureDefinition>): void {\n  for (const { resource: sd } of bundle.entry ?? []) {\n    if (!sd?.name) {\n      throw new Error(`Failed loading StructureDefinition from bundle`);\n    }\n    if (sd.resourceType !== 'StructureDefinition') {\n      continue;\n    }\n    const schema = parseStructureDefinition(sd);\n    DATA_TYPES[sd.name] = schema;\n    for (const inner of schema.innerTypes) {\n      DATA_TYPES[inner.name] = inner;\n    }\n  }\n}\n\nexport function getDataType(type: string): InternalTypeSchema {\n  const schema = DATA_TYPES[type];\n  if (!schema) {\n    throw new OperationOutcomeError(serverError(Error('Unknown data type: ' + type)));\n  }\n  return schema;\n}\n\ninterface BackboneContext {\n  type: InternalTypeSchema;\n  path: string;\n  parent?: BackboneContext;\n}\n\n/**\n * @experimental\n */\nclass StructureDefinitionParser {\n  private readonly elements: ElementDefinition[];\n  private readonly elementIndex: Record<string, ElementDefinition>;\n  private index: number;\n  private readonly resourceSchema: InternalTypeSchema;\n  private slicingContext: { field: SlicingRules; current?: SliceDefinition; path: string } | undefined;\n  private innerTypes: InternalTypeSchema[];\n  private backboneContext: BackboneContext | undefined;\n\n  /**\n   * @param sd The StructureDefinition to parse\n   * @throws Throws when the StructureDefinition does not have a populated `snapshot` field\n   */\n  constructor(sd: StructureDefinition) {\n    if (!sd.snapshot?.element || sd.snapshot.element.length === 0) {\n      throw new Error(`No snapshot defined for StructureDefinition '${sd.name}'`);\n    }\n    const root = sd.snapshot.element[0];\n\n    this.elements = sd.snapshot.element.slice(1);\n    this.elementIndex = Object.create(null);\n    this.index = 0;\n    this.resourceSchema = {\n      name: sd.type as ResourceType,\n      fields: {},\n      constraints: this.parseFieldDefinition(root).constraints,\n      innerTypes: [],\n    };\n    this.innerTypes = [];\n  }\n\n  parse(): InternalTypeSchema {\n    let element = this.next();\n    while (element) {\n      if (element.sliceName) {\n        // Start of slice: this ElementDefinition defines the top-level element of a slice value\n        this.parseSliceStart(element);\n      } else if (element.id?.includes(':')) {\n        // Slice element, part of some slice definition\n        if (this.slicingContext?.current) {\n          const path = elementPath(element, this.slicingContext.path);\n          this.slicingContext.current.fields[path] = this.parseFieldDefinition(element);\n        }\n      } else {\n        // Normal field definition\n        const field = this.parseFieldDefinition(element);\n        this.checkFieldEnter(element, field);\n\n        // Record field in schema\n        if (this.backboneContext && element.path?.startsWith(this.backboneContext.path + '.')) {\n          this.backboneContext.type.fields[elementPath(element, this.backboneContext.path)] = field;\n        } else if (this.backboneContext?.parent && element.path?.startsWith(this.backboneContext.parent.path + '.')) {\n          this.backboneContext.parent.type.fields[elementPath(element, this.backboneContext.parent.path)] = field;\n        } else {\n          this.resourceSchema.fields[elementPath(element, this.resourceSchema.name)] = field;\n        }\n\n        // Clean up contextual book-keeping\n        this.checkFieldExit(element);\n      }\n\n      element = this.next();\n    }\n\n    // Wrap up if the StructureDefinition ends on a slice or backbone element\n    this.checkFieldExit();\n    if (this.innerTypes.length > 0) {\n      this.resourceSchema.innerTypes = this.innerTypes;\n    }\n\n    return this.resourceSchema;\n  }\n\n  private checkFieldEnter(element: ElementDefinition, field: ElementValidator): void {\n    if (this.isInnerType(element)) {\n      while (this.backboneContext && !pathsCompatible(this.backboneContext?.path, element.path)) {\n        // Starting new inner type, unwind type stack to this property's parent\n        this.innerTypes.push(this.backboneContext.type);\n        this.backboneContext = this.backboneContext.parent;\n      }\n      this.backboneContext = {\n        type: {\n          name: buildTypeName(element.path?.split('.') ?? []) as ResourceType,\n          fields: {},\n          constraints: this.parseFieldDefinition(element).constraints,\n          innerTypes: [],\n        },\n        path: element.path ?? '',\n        parent: pathsCompatible(this.backboneContext?.path, element.path)\n          ? this.backboneContext\n          : this.backboneContext?.parent,\n      };\n    }\n    if (element.slicing && !this.slicingContext) {\n      field.slicing = {\n        discriminator: (element.slicing?.discriminator ?? []).map((d) => ({\n          path: d.path as string,\n          type: d.type as string,\n        })),\n        slices: [],\n        ordered: element.slicing?.ordered ?? false,\n        rule: element.slicing?.rules,\n      };\n      this.slicingContext = { field: field.slicing, path: element.path ?? '' };\n    }\n  }\n\n  private checkFieldExit(element: ElementDefinition | undefined = undefined): void {\n    if (this.backboneContext && !pathsCompatible(this.backboneContext.path, element?.path)) {\n      // Leaving BackboneElement child fields\n      if (this.backboneContext.parent) {\n        do {\n          this.innerTypes.push(this.backboneContext.type);\n          this.backboneContext = this.backboneContext.parent;\n        } while (this.backboneContext && !pathsCompatible(this.backboneContext.path, element?.path));\n      } else {\n        this.innerTypes.push(this.backboneContext.type);\n        delete this.backboneContext;\n      }\n    }\n    if (this.slicingContext && !pathsCompatible(this.slicingContext.path, element?.path as string)) {\n      // Path must be compatible with the sliced field path (i.e. have it as a prefix) to be a part of the\n      // same slice group; otherwise, that group is finished and this is the start of a new field\n      if (this.slicingContext?.current) {\n        this.slicingContext.field.slices.push(this.slicingContext.current);\n      }\n      delete this.slicingContext;\n    }\n  }\n\n  private next(): ElementDefinition | undefined {\n    const element = this.peek();\n    if (element) {\n      this.index++;\n      return element;\n    }\n    return undefined;\n  }\n\n  private peek(): ElementDefinition | undefined {\n    const element = this.elements[this.index];\n    if (element) {\n      this.elementIndex[element.path ?? ''] = element;\n      if (element.contentReference) {\n        const ref = this.elementIndex[element.contentReference.slice(element.contentReference.indexOf('#') + 1)];\n        if (!ref) {\n          return undefined;\n        }\n        return {\n          ...ref,\n          id: element.id,\n          path: element.path,\n        };\n      }\n      return element;\n    }\n    return undefined;\n  }\n\n  private isInnerType(current: ElementDefinition): boolean {\n    const next = this.peek();\n    return !!(\n      pathsCompatible(current?.path, next?.path) &&\n      current.type?.some((t) => ['BackboneElement', 'Element'].includes(t.code as string))\n    );\n  }\n\n  private parseSliceStart(element: ElementDefinition): void {\n    if (!this.slicingContext) {\n      throw new Error('Invalid slice start before discriminator');\n    }\n    if (this.slicingContext.current) {\n      this.slicingContext.field.slices.push(this.slicingContext.current);\n    }\n    this.slicingContext.current = {\n      name: element.sliceName ?? '',\n      fields: {},\n      min: element.min ?? 0,\n      max: element.max === '*' ? Number.POSITIVE_INFINITY : Number.parseInt(element.max as string, 10),\n    };\n  }\n\n  private parseFieldDefinition(ed: ElementDefinition): ElementValidator {\n    const max = parseCardinality(ed.max as string);\n    const baseMax = ed.base?.max ? parseCardinality(ed.base.max) : max;\n    const typedElementDef = { type: 'ElementDefinition', value: ed };\n    return {\n      min: ed.min ?? 0,\n      max: max,\n      isArray: baseMax > 1,\n      constraints: (ed.constraint ?? []).map((c) => ({\n        key: c.key ?? '',\n        severity: c.severity ?? 'error',\n        expression: c.expression ?? '',\n        description: c.human ?? '',\n      })),\n      type: (ed.type ?? []).map((t) => ({\n        code: ['BackboneElement', 'Element'].includes(t.code as string)\n          ? buildTypeName(ed.base?.path?.split('.') ?? [])\n          : t.code ?? '',\n        targetProfile: t.targetProfile ?? [],\n      })),\n      fixed: firstValue(getTypedPropertyValue(typedElementDef, 'fixed')),\n      pattern: firstValue(getTypedPropertyValue(typedElementDef, 'pattern')),\n      binding: ed.binding?.strength === 'required' ? ed.binding.valueSet : undefined,\n    };\n  }\n}\n\nfunction parseCardinality(c: string): number {\n  return c === '*' ? Number.POSITIVE_INFINITY : Number.parseInt(c, 10);\n}\n\nfunction elementPath(element: ElementDefinition, prefix = ''): string {\n  return trimPrefix(element.path, prefix);\n}\n\nfunction trimPrefix(str: string | undefined, prefix: string): string {\n  if (!str) {\n    return '';\n  }\n  if (prefix && str.startsWith(prefix)) {\n    return str.substring(prefix.length + 1);\n  }\n  return str;\n}\n\n/**\n * Tests whether two element paths are compatible, i.e. whether the child path is nested under the parent.\n * @param parent The expected parent path, which should be a prefix of the child path.\n * @param child The child path to test for compatibility with the parent path.\n * @returns True if the given path is a child of the parent.\n */\nfunction pathsCompatible(parent: string | undefined, child: string | undefined): boolean {\n  if (!parent || !child) {\n    return false;\n  }\n  return child.startsWith(parent + '.') || child === parent;\n}\n\nfunction buildTypeName(components: string[]): string {\n  if (components.length === 1) {\n    return components[0];\n  }\n  return components.map(capitalize).join('');\n}\n\nfunction firstValue(obj: TypedValue | TypedValue[] | undefined): TypedValue | undefined {\n  if (Array.isArray(obj) && obj.length > 0) {\n    return obj[0];\n  } else if (!isEmpty(obj)) {\n    return obj as TypedValue;\n  } else {\n    return undefined;\n  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package/dist/esm/typeschema/validation.mjs

@@ -1,262 +0,0 @@
-import { getDataType, parseStructureDefinition } from './types.mjs';
-import { OperationOutcomeError, validationError } from '../outcomes.mjs';
-import { PropertyType } from '../types.mjs';
-import { isEmpty, isLowerCase } from '../utils.mjs';
-import { getTypedPropertyValue } from '../fhirpath/utils.mjs';
-import '../fhirpath/parse.mjs';
-import { createStructureIssue } from '../schema.mjs';
-
-/*
- * This file provides schema validation utilities for FHIR JSON objects.
- *
- * See: [JSON Representation of Resources](https://hl7.org/fhir/json.html)
- * See: [FHIR Data Types](https://www.hl7.org/fhir/datatypes.html)
- */
-const fhirTypeToJsType = {
-    base64Binary: 'string',
-    boolean: 'boolean',
-    canonical: 'string',
-    code: 'string',
-    date: 'string',
-    dateTime: 'string',
-    decimal: 'number',
-    id: 'string',
-    instant: 'string',
-    integer: 'number',
-    markdown: 'string',
-    oid: 'string',
-    positiveInt: 'number',
-    string: 'string',
-    time: 'string',
-    unsignedInt: 'number',
-    uri: 'string',
-    url: 'string',
-    uuid: 'string',
-    xhtml: 'string',
-    'http://hl7.org/fhirpath/System.String': 'string', // Not actually a FHIR type, but included in some StructureDefinition resources
-};
-/*
- * This file provides schema validation utilities for FHIR JSON objects.
- *
- * See: [JSON Representation of Resources](https://hl7.org/fhir/json.html)
- * See: [FHIR Data Types](https://www.hl7.org/fhir/datatypes.html)
- */
-const validationRegexes = {
-    base64Binary: /^([A-Za-z\d+/]{4})*([A-Za-z\d+/]{2}==|[A-Za-z\d+/]{3}=)?$/,
-    canonical: /^\S*$/,
-    code: /^[^\s]+( [^\s]+)*$/,
-    date: /^(\d(\d(\d[1-9]|[1-9]0)|[1-9]00)|[1-9]000)(-(0[1-9]|1[0-2])(-(0[1-9]|[1-2]\d|3[0-1]))?)?$/,
-    dateTime: /^(\d(\d(\d[1-9]|[1-9]0)|[1-9]00)|[1-9]000)(-(0[1-9]|1[0-2])(-(0[1-9]|[1-2]\d|3[0-1])(T([01]\d|2[0-3]):[0-5]\d:([0-5]\d|60)(\.\d{1,9})?)?)?(Z|[+-]((0\d|1[0-3]):[0-5]\d|14:00)?)?)?$/,
-    id: /^[A-Za-z0-9\-.]{1,64}$/,
-    instant: /^(\d(\d(\d[1-9]|[1-9]0)|[1-9]00)|[1-9]000)-(0[1-9]|1[0-2])-(0[1-9]|[1-2]\d|3[0-1])T([01]\d|2[0-3]):[0-5]\d:([0-5]\d|60)(\.\d{1,9})?(Z|[+-]((0\d|1[0-3]):[0-5]\d|14:00))$/,
-    markdown: /^[\s\S]+$/,
-    oid: /^urn:oid:[0-2](\.(0|[1-9]\d*))+$/,
-    string: /^[\s\S]+$/,
-    time: /^([01]\d|2[0-3]):[0-5]\d:([0-5]\d|60)(\.\d{1,9})?$/,
-    uri: /^\S*$/,
-    url: /^\S*$/,
-    uuid: /^urn:uuid:[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/,
-    xhtml: /.*/,
-};
-function validateResource(resource, profile) {
-    return new ResourceValidator(resource.resourceType, profile).validate(resource);
-}
-class ResourceValidator {
-    constructor(resourceType, profile) {
-        this.issues = [];
-        if (!profile) {
-            this.schema = getDataType(resourceType);
-        }
-        else {
-            this.schema = parseStructureDefinition(profile);
-        }
-    }
-    validate(resource) {
-        if (!resource) {
-            throw new OperationOutcomeError(validationError('Resource is null'));
-        }
-        const resourceType = resource.resourceType;
-        if (!resourceType) {
-            throw new OperationOutcomeError(validationError('Missing resource type'));
-        }
-        this.validateObject({ type: resourceType, value: resource }, this.schema, resourceType);
-        const issues = this.issues;
-        this.issues = []; // Reset issues to allow re-using the validator for other resources
-        if (issues.length > 0) {
-            throw new OperationOutcomeError({
-                resourceType: 'OperationOutcome',
-                issue: issues,
-            });
-        }
-    }
-    validateObject(value, schema, path) {
-        for (const [key, _propSchema] of Object.entries(schema.fields)) {
-            this.checkProperty(value, key, schema, path + '.' + key);
-        }
-        //@TODO(mattwiller 2023-06-05): Detect extraneous properties in a single pass by keeping track of all keys that
-        // were correctly matched to resource properties as elements are validated above
-        this.checkAdditionalProperties(value, schema.fields, path);
-    }
-    checkProperty(value, key, schema, path) {
-        const propertyValues = getNestedProperty(value, key);
-        const element = schema.fields[key];
-        if (!element) {
-            throw new Error(`Missing element validation schema for ${key}`);
-        }
-        for (const property of propertyValues) {
-            if (isEmpty(property)) {
-                if (element.min > 0) {
-                    this.issues.push(createStructureIssue(path, 'Missing required property'));
-                }
-                return;
-            }
-            let values;
-            if (element.isArray) {
-                if (!Array.isArray(property)) {
-                    this.issues.push(createStructureIssue(path, 'Expected array of values'));
-                    return;
-                }
-                values = property;
-            }
-            else {
-                if (Array.isArray(property)) {
-                    this.issues.push(createStructureIssue(path, 'Expected single value'));
-                    return;
-                }
-                values = [property];
-            }
-            for (const value of values) {
-                this.checkPropertyValue(value, path);
-            }
-        }
-    }
-    checkPropertyValue(value, path) {
-        if (isLowerCase(value.type.charAt(0))) {
-            this.validatePrimitiveType(value, path);
-        }
-        else {
-            // Recursively validate as the expected data type
-            const type = getDataType(value.type);
-            this.validateObject(value, type, path);
-        }
-    }
-    checkAdditionalProperties(typedValue, properties, path) {
-        const object = typedValue.value;
-        for (const key of Object.keys(object)) {
-            if (key === 'resourceType') {
-                continue; // Skip special resource type discriminator property in JSON
-            }
-            if (!(key in properties) &&
-                !isChoiceOfType(typedValue, key, properties) &&
-                !this.isPrimitiveExtension(typedValue, key, path)) {
-                this.issues.push(createStructureIssue(`${path}.${key}`, `Invalid additional property "${key}"`));
-            }
-        }
-    }
-    /**
-     * Checks the element for a primitive extension.
-     *
-     * FHIR elements with primitive data types are represented in two parts:
-     *   1) A JSON property with the name of the element, which has a JSON type of number, boolean, or string
-     *   2) a JSON property with _ prepended to the name of the element, which, if present, contains the value's id and/or extensions
-     *
-     * See: https://hl7.org/fhir/json.html#primitive
-     * @param typedValue The parent value
-     * @param key The property key to check
-     * @param path The path to the property
-     * @returns Whether the element is a primitive extension
-     */
-    isPrimitiveExtension(typedValue, key, path) {
-        // Primitive element starts with underscore
-        if (!key.startsWith('_')) {
-            return false;
-        }
-        // Then validate the element
-        //@TODO(mattwiller 2023-06-05): Move this to occur along with the rest of validation
-        this.validateObject({ type: 'Element', value: typedValue.value[key] }, getDataType('Element'), path);
-        return true;
-    }
-    validatePrimitiveType(typedValue, path) {
-        const { type, value } = typedValue;
-        // First, make sure the value is the correct JS type
-        const expectedType = fhirTypeToJsType[type];
-        if (typeof value !== expectedType) {
-            this.issues.push(createStructureIssue(path, `Invalid JSON type at ${path}: expected ${expectedType}, but got ${typeof value}`));
-            return;
-        }
-        // Then, perform additional checks for specialty types
-        if (expectedType === 'string') {
-            this.validateString(value, type, path);
-        }
-        else if (expectedType === 'number') {
-            this.validateNumber(value, type, path);
-        }
-    }
-    validateString(str, type, path) {
-        if (!str.trim()) {
-            this.issues.push(createStructureIssue(path, 'String must contain non-whitespace content'));
-            return;
-        }
-        const regex = validationRegexes[type];
-        if (regex && !regex.exec(str)) {
-            this.issues.push(createStructureIssue(path, 'Invalid ' + type + ' format'));
-        }
-    }
-    validateNumber(n, type, path) {
-        if (isNaN(n) || !isFinite(n)) {
-            this.issues.push(createStructureIssue(path, 'Invalid numeric value'));
-        }
-        else if (isIntegerType(type) && !Number.isInteger(n)) {
-            this.issues.push(createStructureIssue(path, 'Expected number to be an integer'));
-        }
-        else if (type === PropertyType.positiveInt && n <= 0) {
-            this.issues.push(createStructureIssue(path, 'Expected number to be positive'));
-        }
-        else if (type === PropertyType.unsignedInt && n < 0) {
-            this.issues.push(createStructureIssue(path, 'Expected number to be non-negative'));
-        }
-    }
-}
-function isIntegerType(propertyType) {
-    return (propertyType === PropertyType.integer ||
-        propertyType === PropertyType.positiveInt ||
-        propertyType === PropertyType.unsignedInt);
-}
-function isChoiceOfType(typedValue, key, propertyDefinitions) {
-    const parts = key.split(/(?=[A-Z])/g); // Split before capital letters
-    let testProperty = '';
-    for (const part of parts) {
-        testProperty += part;
-        if (!propertyDefinitions[testProperty + '[x]']) {
-            continue;
-        }
-        const typedPropertyValue = getTypedPropertyValue(typedValue, testProperty);
-        return !!typedPropertyValue;
-    }
-    return false;
-}
-function getNestedProperty(value, key) {
-    const [firstProp, ...nestedProps] = key.split('.');
-    let propertyValues = [getTypedPropertyValue(value, firstProp)];
-    for (const prop of nestedProps) {
-        const next = [];
-        for (const current of propertyValues) {
-            if (current === undefined) {
-                continue;
-            }
-            else if (Array.isArray(current)) {
-                for (const element of current) {
-                    next.push(getTypedPropertyValue(element, prop));
-                }
-            }
-            else {
-                next.push(getTypedPropertyValue(current, prop));
-            }
-        }
-        propertyValues = next;
-    }
-    return propertyValues;
-}
-
-export { validateResource };
-//# sourceMappingURL=validation.mjs.map

package/dist/esm/typeschema/validation.mjs.map

@@ -1 +0,0 @@
-{"version":3,"file":"validation.mjs","sources":["../../../src/typeschema/validation.ts"],"sourcesContent":["import { OperationOutcomeIssue, Resource, StructureDefinition } from '@medplum/fhirtypes';\nimport { ElementValidator, getDataType, parseStructureDefinition, InternalTypeSchema } from './types';\nimport { OperationOutcomeError, validationError } from '../outcomes';\nimport { PropertyType, TypedValue } from '../types';\nimport { getTypedPropertyValue } from '../fhirpath';\nimport { createStructureIssue } from '../schema';\nimport { isEmpty, isLowerCase } from '../utils';\n\n/*\n * This file provides schema validation utilities for FHIR JSON objects.\n *\n * See: [JSON Representation of Resources](https://hl7.org/fhir/json.html)\n * See: [FHIR Data Types](https://www.hl7.org/fhir/datatypes.html)\n */\nconst fhirTypeToJsType: Record<string, string> = {\n  base64Binary: 'string',\n  boolean: 'boolean',\n  canonical: 'string',\n  code: 'string',\n  date: 'string',\n  dateTime: 'string',\n  decimal: 'number',\n  id: 'string',\n  instant: 'string',\n  integer: 'number',\n  markdown: 'string',\n  oid: 'string',\n  positiveInt: 'number',\n  string: 'string',\n  time: 'string',\n  unsignedInt: 'number',\n  uri: 'string',\n  url: 'string',\n  uuid: 'string',\n  xhtml: 'string',\n  'http://hl7.org/fhirpath/System.String': 'string', // Not actually a FHIR type, but included in some StructureDefinition resources\n};\n\n/*\n * This file provides schema validation utilities for FHIR JSON objects.\n *\n * See: [JSON Representation of Resources](https://hl7.org/fhir/json.html)\n * See: [FHIR Data Types](https://www.hl7.org/fhir/datatypes.html)\n */\nconst validationRegexes: Record<string, RegExp> = {\n  base64Binary: /^([A-Za-z\\d+/]{4})*([A-Za-z\\d+/]{2}==|[A-Za-z\\d+/]{3}=)?$/,\n  canonical: /^\\S*$/,\n  code: /^[^\\s]+( [^\\s]+)*$/,\n  date: /^(\\d(\\d(\\d[1-9]|[1-9]0)|[1-9]00)|[1-9]000)(-(0[1-9]|1[0-2])(-(0[1-9]|[1-2]\\d|3[0-1]))?)?$/,\n  dateTime:\n    /^(\\d(\\d(\\d[1-9]|[1-9]0)|[1-9]00)|[1-9]000)(-(0[1-9]|1[0-2])(-(0[1-9]|[1-2]\\d|3[0-1])(T([01]\\d|2[0-3]):[0-5]\\d:([0-5]\\d|60)(\\.\\d{1,9})?)?)?(Z|[+-]((0\\d|1[0-3]):[0-5]\\d|14:00)?)?)?$/,\n  id: /^[A-Za-z0-9\\-.]{1,64}$/,\n  instant:\n    /^(\\d(\\d(\\d[1-9]|[1-9]0)|[1-9]00)|[1-9]000)-(0[1-9]|1[0-2])-(0[1-9]|[1-2]\\d|3[0-1])T([01]\\d|2[0-3]):[0-5]\\d:([0-5]\\d|60)(\\.\\d{1,9})?(Z|[+-]((0\\d|1[0-3]):[0-5]\\d|14:00))$/,\n  markdown: /^[\\s\\S]+$/,\n  oid: /^urn:oid:[0-2](\\.(0|[1-9]\\d*))+$/,\n  string: /^[\\s\\S]+$/,\n  time: /^([01]\\d|2[0-3]):[0-5]\\d:([0-5]\\d|60)(\\.\\d{1,9})?$/,\n  uri: /^\\S*$/,\n  url: /^\\S*$/,\n  uuid: /^urn:uuid:[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/,\n  xhtml: /.*/,\n};\n\nexport function validateResource(resource: Resource, profile?: StructureDefinition): void {\n  return new ResourceValidator(resource.resourceType, profile).validate(resource);\n}\n\nclass ResourceValidator {\n  private issues: OperationOutcomeIssue[];\n  private readonly schema: InternalTypeSchema;\n\n  constructor(resourceType: string, profile?: StructureDefinition) {\n    this.issues = [];\n    if (!profile) {\n      this.schema = getDataType(resourceType);\n    } else {\n      this.schema = parseStructureDefinition(profile);\n    }\n  }\n\n  validate(resource: Resource): void {\n    if (!resource) {\n      throw new OperationOutcomeError(validationError('Resource is null'));\n    }\n    const resourceType = resource.resourceType;\n    if (!resourceType) {\n      throw new OperationOutcomeError(validationError('Missing resource type'));\n    }\n\n    this.validateObject({ type: resourceType, value: resource }, this.schema, resourceType);\n\n    const issues = this.issues;\n    this.issues = []; // Reset issues to allow re-using the validator for other resources\n    if (issues.length > 0) {\n      throw new OperationOutcomeError({\n        resourceType: 'OperationOutcome',\n        issue: issues,\n      });\n    }\n  }\n\n  private validateObject(value: TypedValue, schema: InternalTypeSchema, path: string): void {\n    for (const [key, _propSchema] of Object.entries(schema.fields)) {\n      this.checkProperty(value, key, schema, path + '.' + key);\n    }\n\n    //@TODO(mattwiller 2023-06-05): Detect extraneous properties in a single pass by keeping track of all keys that\n    // were correctly matched to resource properties as elements are validated above\n    this.checkAdditionalProperties(value, schema.fields, path);\n  }\n\n  private checkProperty(value: TypedValue, key: string, schema: InternalTypeSchema, path: string): void {\n    const propertyValues = getNestedProperty(value, key);\n    const element = schema.fields[key];\n    if (!element) {\n      throw new Error(`Missing element validation schema for ${key}`);\n    }\n    for (const property of propertyValues) {\n      if (isEmpty(property)) {\n        if (element.min > 0) {\n          this.issues.push(createStructureIssue(path, 'Missing required property'));\n        }\n        return;\n      }\n\n      let values: TypedValue[];\n      if (element.isArray) {\n        if (!Array.isArray(property)) {\n          this.issues.push(createStructureIssue(path, 'Expected array of values'));\n          return;\n        }\n        values = property;\n      } else {\n        if (Array.isArray(property)) {\n          this.issues.push(createStructureIssue(path, 'Expected single value'));\n          return;\n        }\n        values = [property as TypedValue];\n      }\n      for (const value of values) {\n        this.checkPropertyValue(value, path);\n      }\n    }\n  }\n\n  private checkPropertyValue(value: TypedValue, path: string): void {\n    if (isLowerCase(value.type.charAt(0))) {\n      this.validatePrimitiveType(value, path);\n    } else {\n      // Recursively validate as the expected data type\n      const type = getDataType(value.type);\n      this.validateObject(value, type, path);\n    }\n  }\n\n  private checkAdditionalProperties(\n    typedValue: TypedValue,\n    properties: Record<string, ElementValidator>,\n    path: string\n  ): void {\n    const object = typedValue.value as Record<string, unknown>;\n    for (const key of Object.keys(object)) {\n      if (key === 'resourceType') {\n        continue; // Skip special resource type discriminator property in JSON\n      }\n      if (\n        !(key in properties) &&\n        !isChoiceOfType(typedValue, key, properties) &&\n        !this.isPrimitiveExtension(typedValue, key, path)\n      ) {\n        this.issues.push(createStructureIssue(`${path}.${key}`, `Invalid additional property \"${key}\"`));\n      }\n    }\n  }\n\n  /**\n   * Checks the element for a primitive extension.\n   *\n   * FHIR elements with primitive data types are represented in two parts:\n   *   1) A JSON property with the name of the element, which has a JSON type of number, boolean, or string\n   *   2) a JSON property with _ prepended to the name of the element, which, if present, contains the value's id and/or extensions\n   *\n   * See: https://hl7.org/fhir/json.html#primitive\n   * @param typedValue The parent value\n   * @param key The property key to check\n   * @param path The path to the property\n   * @returns Whether the element is a primitive extension\n   */\n  private isPrimitiveExtension(typedValue: TypedValue, key: string, path: string): boolean {\n    // Primitive element starts with underscore\n    if (!key.startsWith('_')) {\n      return false;\n    }\n\n    // Then validate the element\n    //@TODO(mattwiller 2023-06-05): Move this to occur along with the rest of validation\n    this.validateObject({ type: 'Element', value: typedValue.value[key] }, getDataType('Element'), path);\n    return true;\n  }\n\n  private validatePrimitiveType(typedValue: TypedValue, path: string): void {\n    const { type, value } = typedValue;\n\n    // First, make sure the value is the correct JS type\n    const expectedType = fhirTypeToJsType[type];\n    if (typeof value !== expectedType) {\n      this.issues.push(\n        createStructureIssue(path, `Invalid JSON type at ${path}: expected ${expectedType}, but got ${typeof value}`)\n      );\n      return;\n    }\n\n    // Then, perform additional checks for specialty types\n    if (expectedType === 'string') {\n      this.validateString(value as string, type as PropertyType, path);\n    } else if (expectedType === 'number') {\n      this.validateNumber(value as number, type as PropertyType, path);\n    }\n  }\n\n  private validateString(str: string, type: PropertyType, path: string): void {\n    if (!str.trim()) {\n      this.issues.push(createStructureIssue(path, 'String must contain non-whitespace content'));\n      return;\n    }\n\n    const regex = validationRegexes[type];\n    if (regex && !regex.exec(str)) {\n      this.issues.push(createStructureIssue(path, 'Invalid ' + type + ' format'));\n    }\n  }\n\n  private validateNumber(n: number, type: PropertyType, path: string): void {\n    if (isNaN(n) || !isFinite(n)) {\n      this.issues.push(createStructureIssue(path, 'Invalid numeric value'));\n    } else if (isIntegerType(type) && !Number.isInteger(n)) {\n      this.issues.push(createStructureIssue(path, 'Expected number to be an integer'));\n    } else if (type === PropertyType.positiveInt && n <= 0) {\n      this.issues.push(createStructureIssue(path, 'Expected number to be positive'));\n    } else if (type === PropertyType.unsignedInt && n < 0) {\n      this.issues.push(createStructureIssue(path, 'Expected number to be non-negative'));\n    }\n  }\n}\n\nfunction isIntegerType(propertyType: PropertyType): boolean {\n  return (\n    propertyType === PropertyType.integer ||\n    propertyType === PropertyType.positiveInt ||\n    propertyType === PropertyType.unsignedInt\n  );\n}\n\nfunction isChoiceOfType(\n  typedValue: TypedValue,\n  key: string,\n  propertyDefinitions: Record<string, ElementValidator>\n): boolean {\n  const parts = key.split(/(?=[A-Z])/g); // Split before capital letters\n  let testProperty = '';\n  for (const part of parts) {\n    testProperty += part;\n    if (!propertyDefinitions[testProperty + '[x]']) {\n      continue;\n    }\n    const typedPropertyValue = getTypedPropertyValue(typedValue, testProperty);\n    return !!typedPropertyValue;\n  }\n  return false;\n}\n\nfunction getNestedProperty(value: TypedValue, key: string): (TypedValue | TypedValue[] | undefined)[] {\n  const [firstProp, ...nestedProps] = key.split('.');\n  let propertyValues = [getTypedPropertyValue(value, firstProp)];\n  for (const prop of nestedProps) {\n    const next = [];\n    for (const current of propertyValues) {\n      if (current === undefined) {\n        continue;\n      } else if (Array.isArray(current)) {\n        for (const element of current) {\n          next.push(getTypedPropertyValue(element, prop));\n        }\n      } else {\n        next.push(getTypedPropertyValue(current, prop));\n      }\n    }\n    propertyValues = next;\n  }\n  return 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