@medplum/core 2.0.20 → 2.0.22

package/dist/esm/index.mjs

@@ -1,3 +1,4 @@
+export { decodeBase64, encodeBase64 } from './base64.mjs';
 export { convertToTransactionBundle } from './bundle.mjs';
 export { LRUCache } from './cache.mjs';
 export { MEDPLUM_VERSION, MedplumClient, OAuthGrantType, OAuthTokenType } from './client.mjs';

package/dist/esm/index.mjs.map

@@ -1 +1 @@
-{"version":3,"file":"index.mjs","sources":[],"sourcesContent":[],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;"}
+{"version":3,"file":"index.mjs","sources":[],"sourcesContent":[],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;"}

package/dist/esm/jwt.mjs

@@ -3,7 +3,8 @@ import { decodeBase64 } from './base64.mjs';
 /**
  * Decodes a section of a JWT.
  * See: https://tools.ietf.org/html/rfc7519
- * @param payload
+ * @param payload The JWT payload string.
+ * @returns Collection of key value claims in the JWT payload.
  */
 function decodePayload(payload) {
     const cleanedPayload = payload.replace(/-/g, '+').replace(/_/g, '/');
@@ -17,7 +18,8 @@ function decodePayload(payload) {
 }
 /**
  * Parses the JWT payload.
- * @param token JWT token
+ * @param token JWT token.
+ * @returns Collection of key value claims in the JWT payload.
  */
 function parseJWTPayload(token) {
     const [_header, payload, _signature] = token.split('.');

package/dist/esm/jwt.mjs.map

@@ -1 +1 @@
-{"version":3,"file":"jwt.mjs","sources":["../../src/jwt.ts"],"sourcesContent":["import { decodeBase64 } from './base64';\n\n/**\n * Decodes a section of a JWT.\n * See: https://tools.ietf.org/html/rfc7519\n * @param payload\n */\nfunction decodePayload(payload: string): Record<string, number | string> {\n  const cleanedPayload = payload.replace(/-/g, '+').replace(/_/g, '/');\n  const decodedPayload = decodeBase64(cleanedPayload);\n  const uriEncodedPayload = Array.from(decodedPayload).reduce((acc, char) => {\n    const uriEncodedChar = ('00' + char.charCodeAt(0).toString(16)).slice(-2);\n    return `${acc}%${uriEncodedChar}`;\n  }, '');\n  const jsonPayload = decodeURIComponent(uriEncodedPayload);\n  return JSON.parse(jsonPayload);\n}\n\n/**\n * Parses the JWT payload.\n * @param token JWT token\n */\nexport function parseJWTPayload(token: string): Record<string, number | string> {\n  const [_header, payload, _signature] = token.split('.');\n  return decodePayload(payload);\n}\n"],"names":[],"mappings":";;AAEA;;;;AAIG;AACH,SAAS,aAAa,CAAC,OAAe,EAAA;AACpC,IAAA,MAAM,cAAc,GAAG,OAAO,CAAC,OAAO,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC,OAAO,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC;AACrE,IAAA,MAAM,cAAc,GAAG,YAAY,CAAC,cAAc,CAAC,CAAC;AACpD,IAAA,MAAM,iBAAiB,GAAG,KAAK,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,IAAI,KAAI;QACxE,MAAM,cAAc,GAAG,CAAC,IAAI,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,EAAE,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;AAC1E,QAAA,OAAO,CAAG,EAAA,GAAG,CAAI,CAAA,EAAA,cAAc,EAAE,CAAC;KACnC,EAAE,EAAE,CAAC,CAAC;AACP,IAAA,MAAM,WAAW,GAAG,kBAAkB,CAAC,iBAAiB,CAAC,CAAC;AAC1D,IAAA,OAAO,IAAI,CAAC,KAAK,CAAC,WAAW,CAAC,CAAC;AACjC,CAAC;AAED;;;AAGG;AACG,SAAU,eAAe,CAAC,KAAa,EAAA;AAC3C,IAAA,MAAM,CAAC,OAAO,EAAE,OAAO,EAAE,UAAU,CAAC,GAAG,KAAK,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;AACxD,IAAA,OAAO,aAAa,CAAC,OAAO,CAAC,CAAC;AAChC;;;;"}
+{"version":3,"file":"jwt.mjs","sources":["../../src/jwt.ts"],"sourcesContent":["import { decodeBase64 } from './base64';\n\n/**\n * Decodes a section of a JWT.\n * See: https://tools.ietf.org/html/rfc7519\n * @param payload The JWT payload string.\n * @returns Collection of key value claims in the JWT payload.\n */\nfunction decodePayload(payload: string): Record<string, number | string> {\n  const cleanedPayload = payload.replace(/-/g, '+').replace(/_/g, '/');\n  const decodedPayload = decodeBase64(cleanedPayload);\n  const uriEncodedPayload = Array.from(decodedPayload).reduce((acc, char) => {\n    const uriEncodedChar = ('00' + char.charCodeAt(0).toString(16)).slice(-2);\n    return `${acc}%${uriEncodedChar}`;\n  }, '');\n  const jsonPayload = decodeURIComponent(uriEncodedPayload);\n  return JSON.parse(jsonPayload);\n}\n\n/**\n * Parses the JWT payload.\n * @param token JWT token.\n * @returns Collection of key value claims in the JWT payload.\n */\nexport function parseJWTPayload(token: string): Record<string, number | string> {\n  const [_header, payload, _signature] = token.split('.');\n  return decodePayload(payload);\n}\n"],"names":[],"mappings":";;AAEA;;;;;AAKG;AACH,SAAS,aAAa,CAAC,OAAe,EAAA;AACpC,IAAA,MAAM,cAAc,GAAG,OAAO,CAAC,OAAO,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC,OAAO,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC;AACrE,IAAA,MAAM,cAAc,GAAG,YAAY,CAAC,cAAc,CAAC,CAAC;AACpD,IAAA,MAAM,iBAAiB,GAAG,KAAK,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,IAAI,KAAI;QACxE,MAAM,cAAc,GAAG,CAAC,IAAI,GAAG,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,EAAE,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;AAC1E,QAAA,OAAO,CAAG,EAAA,GAAG,CAAI,CAAA,EAAA,cAAc,EAAE,CAAC;KACnC,EAAE,EAAE,CAAC,CAAC;AACP,IAAA,MAAM,WAAW,GAAG,kBAAkB,CAAC,iBAAiB,CAAC,CAAC;AAC1D,IAAA,OAAO,IAAI,CAAC,KAAK,CAAC,WAAW,CAAC,CAAC;AACjC,CAAC;AAED;;;;AAIG;AACG,SAAU,eAAe,CAAC,KAAa,EAAA;AAC3C,IAAA,MAAM,CAAC,OAAO,EAAE,OAAO,EAAE,UAAU,CAAC,GAAG,KAAK,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;AACxD,IAAA,OAAO,aAAa,CAAC,OAAO,CAAC,CAAC;AAChC;;;;"}

package/dist/esm/schema.mjs

@@ -74,7 +74,6 @@ const baseResourceProperties = new Set([
  * const medplum = new MedplumClient();
  * await medplum.requestSchema('Patient');
  * ```
- *
  * @param resourceType The candidate resource type string.
  * @returns True if the resource type is a valid FHIR resource type.
  */
@@ -114,9 +113,7 @@ function isResourceType(resourceType) {
  * const medplum = new MedplumClient();
  * await medplum.requestSchema('Patient');
  * ```
- *
  * @param resourceType The candidate resource type string.
- * @returns True if the resource type is a valid FHIR resource type.
  */
 function validateResourceType(resourceType) {
     if (!resourceType) {
@@ -156,9 +153,7 @@ function validateResourceType(resourceType) {
  * const medplum = new MedplumClient();
  * await medplum.requestSchema('Patient');
  * ```
- *
- * @param resourceType The candidate resource type string.
- * @returns True if the resource type is a valid FHIR resource type.
+ * @param resource The candidate resource.
  */
 function validateResource(resource) {
     new FhirSchemaValidator(resource).validate();
@@ -321,10 +316,10 @@ class FhirSchemaValidator {
      *   2) a JSON property with _ prepended to the name of the element, which, if present, contains the value's id and/or extensions
      *
      * See: https://hl7.org/fhir/json.html#primitive
-     *
      * @param path The path to the property
-     * @param key
-     * @param typedValue
+     * @param key The key in the current typed value.
+     * @param typedValue The current typed value.
+     * @returns True if the primitive element is valid.
      */
     checkPrimitiveElement(path, key, typedValue) {
         // Primitive element starts with underscore
@@ -377,7 +372,6 @@ function isChoiceOfType(key, typedValue, propertyDefinitions) {
  * Recursively checks for null values in an object.
  *
  * Note that "null" is a special value in JSON that is not allowed in FHIR.
- *
  * @param value Input value of any type.
  * @param path Path string to the value for OperationOutcome.
  * @param issues Output list of issues.

package/dist/esm/schema.mjs.map

@@ -1 +1 @@
-{"version":3,"file":"schema.mjs","sources":["../../src/schema.ts"],"sourcesContent":["import { ElementDefinition, OperationOutcomeIssue, Resource } from '@medplum/fhirtypes';\nimport { getTypedPropertyValue, toTypedValue } from './fhirpath';\nimport { OperationOutcomeError, validationError } from './outcomes';\nimport { globalSchema, PropertyType, TypedValue } from './types';\nimport { capitalize, getExtensionValue, isEmpty, isLowerCase } from './utils';\n\n/*\n * This file provides schema validation utilities for FHIR JSON objects.\n *\n * See: [JSON Representation of Resources](https://hl7.org/fhir/json.html)\n * See: [FHIR Data Types](https://www.hl7.org/fhir/datatypes.html)\n */\n\nconst fhirTypeToJsType: Record<string, string> = {\n  base64Binary: 'string',\n  boolean: 'boolean',\n  canonical: 'string',\n  code: 'string',\n  date: 'string',\n  dateTime: 'string',\n  decimal: 'number',\n  id: 'string',\n  instant: 'string',\n  integer: 'number',\n  markdown: 'string',\n  oid: 'string',\n  positiveInt: 'number',\n  string: 'string',\n  time: 'string',\n  unsignedInt: 'number',\n  uri: 'string',\n  url: 'string',\n  uuid: 'string',\n  xhtml: 'string',\n  'http://hl7.org/fhirpath/System.String': 'string',\n};\n\nconst baseResourceProperties = new Set<string>([\n  // Resource\n  'resourceType',\n  'id',\n  'meta',\n  'implicitRules',\n  'language',\n\n  // DomainResource\n  'text',\n  'contained',\n  'extension',\n  'modifierExtension',\n]);\n\n/**\n * Returns true if the given string is a valid FHIR resource type.\n *\n * ```ts\n * isResourceType('Patient'); // true\n * isResourceType('XYZ'); // false\n * ```\n *\n * Note that this depends on globalSchema, which is populated by the StructureDefinition loader.\n *\n * In a server context, you can load all schema definitions:\n *\n * ```ts\n * import { indexStructureDefinitionBundle } from '@medplum/core';\n * import { readJson } from '@medplum/definitions';\n * import { Bundle } from '@medplum/fhirtypes';\n *\n * indexStructureDefinitionBundle(readJson('fhir/r4/profiles-resources.json') as Bundle);\n * ```\n *\n * In a client context, you can load the schema definitions using MedplumClient:\n *\n * ```ts\n * import { MedplumClient } from '@medplum/core';\n *\n * const medplum = new MedplumClient();\n * await medplum.requestSchema('Patient');\n * ```\n *\n * @param resourceType The candidate resource type string.\n * @returns True if the resource type is a valid FHIR resource type.\n */\nexport function isResourceType(resourceType: string): boolean {\n  const typeSchema = globalSchema.types[resourceType];\n  return (\n    typeSchema &&\n    typeSchema.structureDefinition.id === resourceType &&\n    typeSchema.structureDefinition.kind === 'resource'\n  );\n}\n\n/**\n * Validates that the given string is a valid FHIR resource type.\n * On success, silently returns void.\n * On failure, throws an OperationOutcomeError.\n *\n * ```ts\n * validateResourceType('Patient'); // nothing\n * validateResourceType('XYZ'); // throws OperationOutcomeError\n * ```\n *\n * Note that this depends on globalSchema, which is populated by the StructureDefinition loader.\n *\n * In a server context, you can load all schema definitions:\n *\n * ```ts\n * import { indexStructureDefinitionBundle } from '@medplum/core';\n * import { readJson } from '@medplum/definitions';\n * import { Bundle } from '@medplum/fhirtypes';\n *\n * indexStructureDefinitionBundle(readJson('fhir/r4/profiles-resources.json') as Bundle);\n * ```\n *\n * In a client context, you can load the schema definitions using MedplumClient:\n *\n * ```ts\n * import { MedplumClient } from '@medplum/core';\n *\n * const medplum = new MedplumClient();\n * await medplum.requestSchema('Patient');\n * ```\n *\n * @param resourceType The candidate resource type string.\n * @returns True if the resource type is a valid FHIR resource type.\n */\nexport function validateResourceType(resourceType: string): void {\n  if (!resourceType) {\n    throw new OperationOutcomeError(validationError('Resource type is null'));\n  }\n  if (!isResourceType(resourceType)) {\n    throw new OperationOutcomeError(validationError('Unknown resource type'));\n  }\n}\n\n/**\n * Validates a candidate FHIR resource object.\n * On success, silently returns void.\n * On failure, throws an OperationOutcomeError with issues for each violation.\n *\n * ```ts\n * validateResource({ resourceType: 'Patient' }); // nothing\n * validateResource({ resourceType: 'XYZ' }); // throws OperationOutcomeError\n * ```\n *\n * Note that this depends on globalSchema, which is populated by the StructureDefinition loader.\n *\n * In a server context, you can load all schema definitions:\n *\n * ```ts\n * import { indexStructureDefinitionBundle } from '@medplum/core';\n * import { readJson } from '@medplum/definitions';\n * import { Bundle } from '@medplum/fhirtypes';\n *\n * indexStructureDefinitionBundle(readJson('fhir/r4/profiles-resources.json') as Bundle);\n * ```\n *\n * In a client context, you can load the schema definitions using MedplumClient:\n *\n * ```ts\n * import { MedplumClient } from '@medplum/core';\n *\n * const medplum = new MedplumClient();\n * await medplum.requestSchema('Patient');\n * ```\n *\n * @param resourceType The candidate resource type string.\n * @returns True if the resource type is a valid FHIR resource type.\n */\nexport function validateResource<T extends Resource>(resource: T): void {\n  new FhirSchemaValidator(resource).validate();\n}\n\nexport class FhirSchemaValidator<T extends Resource> {\n  private readonly issues: OperationOutcomeIssue[];\n  private readonly root: T;\n\n  constructor(root: T) {\n    this.issues = [];\n    this.root = root;\n  }\n\n  validate(): void {\n    const resource = this.root;\n    if (!resource) {\n      throw new OperationOutcomeError(validationError('Resource is null'));\n    }\n\n    const resourceType = resource.resourceType;\n    if (!resourceType) {\n      throw new OperationOutcomeError(validationError('Missing resource type'));\n    }\n\n    // Check for \"null\" once for the entire object hierarchy\n    checkForNull(resource, '', this.issues);\n\n    this.validateObject(toTypedValue(resource), resourceType);\n\n    if (this.issues.length > 0) {\n      throw new OperationOutcomeError({\n        resourceType: 'OperationOutcome',\n        issue: this.issues,\n      });\n    }\n  }\n\n  private validateObject(typedValue: TypedValue, path: string): void {\n    const definition = globalSchema.types[typedValue.type];\n    if (!definition) {\n      throw new OperationOutcomeError(validationError('Unknown type: ' + typedValue.type));\n    }\n\n    const propertyDefinitions = definition.properties;\n    this.checkProperties(path, propertyDefinitions, typedValue);\n    this.checkAdditionalProperties(path, typedValue, propertyDefinitions);\n  }\n\n  private checkProperties(\n    path: string,\n    propertyDefinitions: Record<string, ElementDefinition>,\n    typedValue: TypedValue\n  ): void {\n    for (const [key, elementDefinition] of Object.entries(propertyDefinitions)) {\n      this.checkProperty(path + '.' + key, elementDefinition, typedValue);\n    }\n  }\n\n  private checkProperty(path: string, elementDefinition: ElementDefinition, typedValue: TypedValue): void {\n    const propertyName = path.split('.').pop() as string;\n    const value = getTypedPropertyValue(typedValue, propertyName);\n\n    if (isEmpty(value)) {\n      if (elementDefinition.min !== undefined && elementDefinition.min > 0) {\n        this.issues.push(createStructureIssue(path, 'Missing required property'));\n      }\n      return;\n    }\n\n    if (elementDefinition.max === '*') {\n      if (!Array.isArray(value)) {\n        this.issues.push(createStructureIssue(path, 'Expected array for property'));\n        return;\n      }\n      for (const item of value) {\n        this.checkPropertyValue(path, elementDefinition, item);\n      }\n    } else {\n      if (Array.isArray(value)) {\n        this.issues.push(createStructureIssue(path, 'Expected single value for property'));\n        return;\n      }\n      this.checkPropertyValue(path, elementDefinition, value as TypedValue);\n    }\n  }\n\n  private checkPropertyValue(path: string, elementDefinition: ElementDefinition, typedValue: TypedValue): void {\n    if (typedValue.value === null) {\n      // Null handled separately\n      return;\n    }\n\n    if (isLowerCase(typedValue.type.charAt(0))) {\n      this.validatePrimitiveType(elementDefinition, typedValue);\n    } else {\n      this.validateObject(typedValue, path);\n    }\n  }\n\n  private validatePrimitiveType(elementDefinition: ElementDefinition, typedValue: TypedValue): void {\n    const { type, value } = typedValue;\n\n    if (value === null) {\n      // Null handled separately, so this code should never be reached\n      // Leaving this check in place for now, in case we change the null handling\n      return;\n    }\n\n    // First, make sure the value is the correct JS type\n    const expectedType = fhirTypeToJsType[typedValue.type];\n    if (typeof value !== expectedType) {\n      this.createIssue(elementDefinition, 'Invalid type for ' + type);\n      return;\n    }\n\n    // Then, perform additional checks for specialty types\n    if (expectedType === 'string') {\n      this.validateString(elementDefinition, type as PropertyType, value as string);\n    } else if (expectedType === 'number') {\n      this.validateNumber(elementDefinition, type as PropertyType, value as number);\n    }\n  }\n\n  private validateString(elementDefinition: ElementDefinition, type: PropertyType, value: string): void {\n    if (!value.trim()) {\n      this.createIssue(elementDefinition, 'Invalid empty string');\n      return;\n    }\n\n    // Try to get the regex\n    const valueDefinition = globalSchema.types[type]?.properties?.['value'];\n    if (valueDefinition?.type) {\n      const regex = getExtensionValue(valueDefinition.type[0], 'http://hl7.org/fhir/StructureDefinition/regex');\n      if (regex) {\n        if (!value.match(new RegExp(regex))) {\n          this.createIssue(elementDefinition, 'Invalid ' + type + ' format');\n        }\n      }\n    }\n  }\n\n  private validateNumber(elementDefinition: ElementDefinition, type: PropertyType, value: number): void {\n    if (isNaN(value) || !isFinite(value)) {\n      this.createIssue(elementDefinition, 'Invalid ' + type + ' value');\n      return;\n    }\n\n    if (isIntegerType(type) && !Number.isInteger(value)) {\n      this.createIssue(elementDefinition, 'Number is not an integer');\n    }\n\n    if (type === PropertyType.positiveInt && value <= 0) {\n      this.createIssue(elementDefinition, 'Number is less than or equal to zero');\n    }\n\n    if (type === PropertyType.unsignedInt && value < 0) {\n      this.createIssue(elementDefinition, 'Number is negative');\n    }\n  }\n\n  private checkAdditionalProperties(\n    path: string,\n    typedValue: TypedValue,\n    propertyDefinitions: Record<string, ElementDefinition>\n  ): void {\n    const object = typedValue.value as Record<string, unknown>;\n    for (const key of Object.keys(object)) {\n      this.checkAdditionalProperty(path, key, typedValue, propertyDefinitions);\n    }\n  }\n\n  /**\n   * Checks if the given property is allowed on the given object.\n   * @param path The path of the current object.\n   * @param key The key of a property to check.\n   * @param typedValue The current object.\n   * @param propertyDefinitions The property definitions of the current object.\n   */\n  private checkAdditionalProperty(\n    path: string,\n    key: string,\n    typedValue: TypedValue,\n    propertyDefinitions: Record<string, ElementDefinition>\n  ): void {\n    if (\n      !baseResourceProperties.has(key) &&\n      !(key in propertyDefinitions) &&\n      !isChoiceOfType(key, typedValue, propertyDefinitions) &&\n      !this.checkPrimitiveElement(path, key, typedValue)\n    ) {\n      const expression = `${path}.${key}`;\n      this.issues.push(createStructureIssue(expression, `Invalid additional property \"${expression}\"`));\n    }\n  }\n\n  /**\n   * Checks the element for a primitive.\n   *\n   * FHIR elements with primitive data types are represented in two parts:\n   *   1) A JSON property with the name of the element, which has a JSON type of number, boolean, or string\n   *   2) a JSON property with _ prepended to the name of the element, which, if present, contains the value's id and/or extensions\n   *\n   * See: https://hl7.org/fhir/json.html#primitive\n   *\n   * @param path The path to the property\n   * @param key\n   * @param typedValue\n   */\n  private checkPrimitiveElement(path: string, key: string, typedValue: TypedValue): boolean {\n    // Primitive element starts with underscore\n    if (!key.startsWith('_')) {\n      return false;\n    }\n\n    // Validate the non-underscore property exists\n    const primitiveKey = key.slice(1);\n    if (!(primitiveKey in typedValue.value)) {\n      return false;\n    }\n\n    // Then validate the element\n    this.validateObject({ type: 'Element', value: typedValue.value[key] }, path);\n    return true;\n  }\n\n  private createIssue(elementDefinition: ElementDefinition, message: string): void {\n    this.issues.push(createStructureIssue(elementDefinition.path as string, message));\n  }\n}\n\nfunction isIntegerType(propertyType: PropertyType): boolean {\n  return (\n    propertyType === PropertyType.integer ||\n    propertyType === PropertyType.positiveInt ||\n    propertyType === PropertyType.unsignedInt\n  );\n}\n\nfunction isChoiceOfType(\n  key: string,\n  typedValue: TypedValue,\n  propertyDefinitions: Record<string, ElementDefinition>\n): boolean {\n  for (const propertyName of Object.keys(propertyDefinitions)) {\n    if (!propertyName.endsWith('[x]')) {\n      continue;\n    }\n    const basePropertyName = propertyName.replace('[x]', '');\n    if (!key.startsWith(basePropertyName)) {\n      continue;\n    }\n    let typedPropertyValue = getTypedPropertyValue(typedValue, propertyName);\n    if (!typedPropertyValue) {\n      continue;\n    }\n    if (Array.isArray(typedPropertyValue)) {\n      // At present, there are no choice types that are arrays in the FHIR spec\n      // Leaving this here to make TypeScript happy, and in case that changes\n      typedPropertyValue = typedPropertyValue[0];\n    }\n    if (typedPropertyValue && key === basePropertyName + capitalize(typedPropertyValue.type)) {\n      return true;\n    }\n  }\n  return false;\n}\n\n/**\n * Recursively checks for null values in an object.\n *\n * Note that \"null\" is a special value in JSON that is not allowed in FHIR.\n *\n * @param value Input value of any type.\n * @param path Path string to the value for OperationOutcome.\n * @param issues Output list of issues.\n */\nexport function checkForNull(value: unknown, path: string, issues: 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+{"version":3,"file":"schema.mjs","sources":["../../src/schema.ts"],"sourcesContent":["import { ElementDefinition, OperationOutcomeIssue, Resource } from '@medplum/fhirtypes';\nimport { getTypedPropertyValue, toTypedValue } from './fhirpath';\nimport { OperationOutcomeError, validationError } from './outcomes';\nimport { globalSchema, PropertyType, TypedValue } from './types';\nimport { capitalize, getExtensionValue, isEmpty, isLowerCase } from './utils';\n\n/*\n * This file provides schema validation utilities for FHIR JSON objects.\n *\n * See: [JSON Representation of Resources](https://hl7.org/fhir/json.html)\n * See: [FHIR Data Types](https://www.hl7.org/fhir/datatypes.html)\n */\n\nconst fhirTypeToJsType: Record<string, string> = {\n  base64Binary: 'string',\n  boolean: 'boolean',\n  canonical: 'string',\n  code: 'string',\n  date: 'string',\n  dateTime: 'string',\n  decimal: 'number',\n  id: 'string',\n  instant: 'string',\n  integer: 'number',\n  markdown: 'string',\n  oid: 'string',\n  positiveInt: 'number',\n  string: 'string',\n  time: 'string',\n  unsignedInt: 'number',\n  uri: 'string',\n  url: 'string',\n  uuid: 'string',\n  xhtml: 'string',\n  'http://hl7.org/fhirpath/System.String': 'string',\n};\n\nconst baseResourceProperties = new Set<string>([\n  // Resource\n  'resourceType',\n  'id',\n  'meta',\n  'implicitRules',\n  'language',\n\n  // DomainResource\n  'text',\n  'contained',\n  'extension',\n  'modifierExtension',\n]);\n\n/**\n * Returns true if the given string is a valid FHIR resource type.\n *\n * ```ts\n * isResourceType('Patient'); // true\n * isResourceType('XYZ'); // false\n * ```\n *\n * Note that this depends on globalSchema, which is populated by the StructureDefinition loader.\n *\n * In a server context, you can load all schema definitions:\n *\n * ```ts\n * import { indexStructureDefinitionBundle } from '@medplum/core';\n * import { readJson } from '@medplum/definitions';\n * import { Bundle } from '@medplum/fhirtypes';\n *\n * indexStructureDefinitionBundle(readJson('fhir/r4/profiles-resources.json') as Bundle);\n * ```\n *\n * In a client context, you can load the schema definitions using MedplumClient:\n *\n * ```ts\n * import { MedplumClient } from '@medplum/core';\n *\n * const medplum = new MedplumClient();\n * await medplum.requestSchema('Patient');\n * ```\n * @param resourceType The candidate resource type string.\n * @returns True if the resource type is a valid FHIR resource type.\n */\nexport function isResourceType(resourceType: string): boolean {\n  const typeSchema = globalSchema.types[resourceType];\n  return (\n    typeSchema &&\n    typeSchema.structureDefinition.id === resourceType &&\n    typeSchema.structureDefinition.kind === 'resource'\n  );\n}\n\n/**\n * Validates that the given string is a valid FHIR resource type.\n * On success, silently returns void.\n * On failure, throws an OperationOutcomeError.\n *\n * ```ts\n * validateResourceType('Patient'); // nothing\n * validateResourceType('XYZ'); // throws OperationOutcomeError\n * ```\n *\n * Note that this depends on globalSchema, which is populated by the StructureDefinition loader.\n *\n * In a server context, you can load all schema definitions:\n *\n * ```ts\n * import { indexStructureDefinitionBundle } from '@medplum/core';\n * import { readJson } from '@medplum/definitions';\n * import { Bundle } from '@medplum/fhirtypes';\n *\n * indexStructureDefinitionBundle(readJson('fhir/r4/profiles-resources.json') as Bundle);\n * ```\n *\n * In a client context, you can load the schema definitions using MedplumClient:\n *\n * ```ts\n * import { MedplumClient } from '@medplum/core';\n *\n * const medplum = new MedplumClient();\n * await medplum.requestSchema('Patient');\n * ```\n * @param resourceType The candidate resource type string.\n */\nexport function validateResourceType(resourceType: string): void {\n  if (!resourceType) {\n    throw new OperationOutcomeError(validationError('Resource type is null'));\n  }\n  if (!isResourceType(resourceType)) {\n    throw new OperationOutcomeError(validationError('Unknown resource type'));\n  }\n}\n\n/**\n * Validates a candidate FHIR resource object.\n * On success, silently returns void.\n * On failure, throws an OperationOutcomeError with issues for each violation.\n *\n * ```ts\n * validateResource({ resourceType: 'Patient' }); // nothing\n * validateResource({ resourceType: 'XYZ' }); // throws OperationOutcomeError\n * ```\n *\n * Note that this depends on globalSchema, which is populated by the StructureDefinition loader.\n *\n * In a server context, you can load all schema definitions:\n *\n * ```ts\n * import { indexStructureDefinitionBundle } from '@medplum/core';\n * import { readJson } from '@medplum/definitions';\n * import { Bundle } from '@medplum/fhirtypes';\n *\n * indexStructureDefinitionBundle(readJson('fhir/r4/profiles-resources.json') as Bundle);\n * ```\n *\n * In a client context, you can load the schema definitions using MedplumClient:\n *\n * ```ts\n * import { MedplumClient } from '@medplum/core';\n *\n * const medplum = new MedplumClient();\n * await medplum.requestSchema('Patient');\n * ```\n * @param resource The candidate resource.\n */\nexport function validateResource<T extends Resource>(resource: T): void {\n  new FhirSchemaValidator(resource).validate();\n}\n\nexport class FhirSchemaValidator<T extends Resource> {\n  private readonly issues: OperationOutcomeIssue[];\n  private readonly root: T;\n\n  constructor(root: T) {\n    this.issues = [];\n    this.root = root;\n  }\n\n  validate(): void {\n    const resource = this.root;\n    if (!resource) {\n      throw new OperationOutcomeError(validationError('Resource is null'));\n    }\n\n    const resourceType = resource.resourceType;\n    if (!resourceType) {\n      throw new OperationOutcomeError(validationError('Missing resource type'));\n    }\n\n    // Check for \"null\" once for the entire object hierarchy\n    checkForNull(resource, '', this.issues);\n\n    this.validateObject(toTypedValue(resource), resourceType);\n\n    if (this.issues.length > 0) {\n      throw new OperationOutcomeError({\n        resourceType: 'OperationOutcome',\n        issue: this.issues,\n      });\n    }\n  }\n\n  private validateObject(typedValue: TypedValue, path: string): void {\n    const definition = globalSchema.types[typedValue.type];\n    if (!definition) {\n      throw new OperationOutcomeError(validationError('Unknown type: ' + typedValue.type));\n    }\n\n    const propertyDefinitions = definition.properties;\n    this.checkProperties(path, propertyDefinitions, typedValue);\n    this.checkAdditionalProperties(path, typedValue, propertyDefinitions);\n  }\n\n  private checkProperties(\n    path: string,\n    propertyDefinitions: Record<string, ElementDefinition>,\n    typedValue: TypedValue\n  ): void {\n    for (const [key, elementDefinition] of Object.entries(propertyDefinitions)) {\n      this.checkProperty(path + '.' + key, elementDefinition, typedValue);\n    }\n  }\n\n  private checkProperty(path: string, elementDefinition: ElementDefinition, typedValue: TypedValue): void {\n    const propertyName = path.split('.').pop() as string;\n    const value = getTypedPropertyValue(typedValue, propertyName);\n\n    if (isEmpty(value)) {\n      if (elementDefinition.min !== undefined && elementDefinition.min > 0) {\n        this.issues.push(createStructureIssue(path, 'Missing required property'));\n      }\n      return;\n    }\n\n    if (elementDefinition.max === '*') {\n      if (!Array.isArray(value)) {\n        this.issues.push(createStructureIssue(path, 'Expected array for property'));\n        return;\n      }\n      for (const item of value) {\n        this.checkPropertyValue(path, elementDefinition, item);\n      }\n    } else {\n      if (Array.isArray(value)) {\n        this.issues.push(createStructureIssue(path, 'Expected single value for property'));\n        return;\n      }\n      this.checkPropertyValue(path, elementDefinition, value as TypedValue);\n    }\n  }\n\n  private checkPropertyValue(path: string, elementDefinition: ElementDefinition, typedValue: TypedValue): void {\n    if (typedValue.value === null) {\n      // Null handled separately\n      return;\n    }\n\n    if (isLowerCase(typedValue.type.charAt(0))) {\n      this.validatePrimitiveType(elementDefinition, typedValue);\n    } else {\n      this.validateObject(typedValue, path);\n    }\n  }\n\n  private validatePrimitiveType(elementDefinition: ElementDefinition, typedValue: TypedValue): void {\n    const { type, value } = typedValue;\n\n    if (value === null) {\n      // Null handled separately, so this code should never be reached\n      // Leaving this check in place for now, in case we change the null handling\n      return;\n    }\n\n    // First, make sure the value is the correct JS type\n    const expectedType = fhirTypeToJsType[typedValue.type];\n    if (typeof value !== expectedType) {\n 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this.createIssue(elementDefinition, 'Invalid ' + type + ' format');\n        }\n      }\n    }\n  }\n\n  private validateNumber(elementDefinition: ElementDefinition, type: PropertyType, value: number): void {\n    if (isNaN(value) || !isFinite(value)) {\n      this.createIssue(elementDefinition, 'Invalid ' + type + ' value');\n      return;\n    }\n\n    if (isIntegerType(type) && !Number.isInteger(value)) {\n      this.createIssue(elementDefinition, 'Number is not an integer');\n    }\n\n    if (type === PropertyType.positiveInt && value <= 0) {\n      this.createIssue(elementDefinition, 'Number is less than or equal to zero');\n    }\n\n    if (type === PropertyType.unsignedInt && value < 0) {\n      this.createIssue(elementDefinition, 'Number is negative');\n    }\n  }\n\n  private checkAdditionalProperties(\n    path: string,\n    typedValue: TypedValue,\n    propertyDefinitions: Record<string, ElementDefinition>\n  ): void {\n    const object = typedValue.value as Record<string, 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typedValue.value)) {\n      return false;\n    }\n\n    // Then validate the element\n    this.validateObject({ type: 'Element', value: typedValue.value[key] }, path);\n    return true;\n  }\n\n  private createIssue(elementDefinition: ElementDefinition, message: string): void {\n    this.issues.push(createStructureIssue(elementDefinition.path as string, message));\n  }\n}\n\nfunction isIntegerType(propertyType: PropertyType): boolean {\n  return (\n    propertyType === PropertyType.integer ||\n    propertyType === PropertyType.positiveInt ||\n    propertyType === PropertyType.unsignedInt\n  );\n}\n\nfunction isChoiceOfType(\n  key: string,\n  typedValue: TypedValue,\n  propertyDefinitions: Record<string, ElementDefinition>\n): boolean {\n  for (const propertyName of Object.keys(propertyDefinitions)) {\n    if (!propertyName.endsWith('[x]')) {\n      continue;\n    }\n    const basePropertyName = propertyName.replace('[x]', '');\n    if (!key.startsWith(basePropertyName)) {\n      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package/dist/esm/search/details.mjs

@@ -23,7 +23,6 @@ var SearchParameterType;
  *   1) The "date" type includes "date", "datetime", and "period".
  *   2) The "token" type includes enums and booleans.
  *   3) Arrays/multiple values are not reflected at all.
- *
  * @param resourceType The root resource type.
  * @param searchParam The search parameter.
  * @returns The search parameter type details.

package/dist/esm/search/details.mjs.map

@@ -1 +1 @@
-{"version":3,"file":"details.mjs","sources":["../../../src/search/details.ts"],"sourcesContent":["import { ElementDefinition, SearchParameter } from '@medplum/fhirtypes';\nimport { PropertyType, buildTypeName, getElementDefinition, globalSchema } from '../types';\nimport { capitalize } from '../utils';\n\nexport enum SearchParameterType {\n  BOOLEAN = 'BOOLEAN',\n  NUMBER = 'NUMBER',\n  QUANTITY = 'QUANTITY',\n  TEXT = 'TEXT',\n  REFERENCE = 'REFERENCE',\n  CANONICAL = 'CANONICAL',\n  DATE = 'DATE',\n  DATETIME = 'DATETIME',\n  PERIOD = 'PERIOD',\n  UUID = 'UUID',\n}\n\nexport interface SearchParameterDetails {\n  readonly columnName: string;\n  readonly type: SearchParameterType;\n  readonly elementDefinition?: ElementDefinition;\n  readonly array?: boolean;\n}\n\n/**\n * Returns the type details of a SearchParameter.\n *\n * The SearchParameter resource has a \"type\" parameter, but that is missing some critical information.\n *\n * For example:\n *   1) The \"date\" type includes \"date\", \"datetime\", and \"period\".\n *   2) The \"token\" type includes enums and booleans.\n *   3) Arrays/multiple values are not reflected at all.\n *\n * @param resourceType The root resource type.\n * @param searchParam The search parameter.\n * @returns The search parameter type details.\n */\nexport function getSearchParameterDetails(resourceType: string, searchParam: SearchParameter): SearchParameterDetails {\n  let result: SearchParameterDetails | undefined =\n    globalSchema.types[resourceType]?.searchParamsDetails?.[searchParam.code as string];\n  if (!result) {\n    result = buildSearchParamterDetails(resourceType, searchParam);\n  }\n  return result;\n}\n\nfunction setSearchParamterDetails(resourceType: string, code: string, details: SearchParameterDetails): void {\n  const typeSchema = globalSchema.types[resourceType];\n  if (!typeSchema.searchParamsDetails) {\n    typeSchema.searchParamsDetails = {};\n  }\n  typeSchema.searchParamsDetails[code] = details;\n}\n\nfunction buildSearchParamterDetails(resourceType: string, searchParam: SearchParameter): SearchParameterDetails {\n  const code = searchParam.code as string;\n  const columnName = convertCodeToColumnName(code);\n  const expression = getExpressionForResourceType(resourceType, searchParam.expression as string)?.split('.');\n  if (!expression) {\n    // This happens on compound types\n    // In the future, explore returning multiple column definitions\n    return { columnName, type: SearchParameterType.TEXT };\n  }\n\n  let baseType = resourceType;\n  let elementDefinition = undefined;\n  let propertyType = undefined;\n  let array = false;\n\n  for (let i = 1; i < expression.length; i++) {\n    let propertyName = expression[i];\n    let hasArrayIndex = false;\n\n    const arrayIndexMatch = /\\[\\d+\\]$/.exec(propertyName);\n    if (arrayIndexMatch) {\n      propertyName = propertyName.substring(0, propertyName.length - arrayIndexMatch[0].length);\n      hasArrayIndex = true;\n    }\n\n    elementDefinition = getElementDefinition(baseType, propertyName);\n    if (!elementDefinition) {\n      throw new Error(`Element definition not found for ${resourceType} ${searchParam.code}`);\n    }\n\n    if (elementDefinition.max !== '0' && elementDefinition.max !== '1' && !hasArrayIndex) {\n      array = true;\n    }\n\n    // \"code\" is only missing when using \"contentReference\"\n    // \"contentReference\" is handled above in \"getElementDefinition\"\n    propertyType = elementDefinition.type?.[0].code as string;\n\n    if (i < expression.length - 1) {\n      if (isBackboneElement(propertyType)) {\n        baseType = buildTypeName(elementDefinition.path?.split('.') as string[]);\n      } else {\n        baseType = propertyType;\n      }\n    }\n  }\n\n  const type = getSearchParameterType(searchParam, propertyType as PropertyType);\n  const result = { columnName, type, elementDefinition, array };\n  setSearchParamterDetails(resourceType, code, result);\n  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package/dist/esm/search/match.mjs

@@ -26,6 +26,7 @@ function matchesSearchRequest(resource, searchRequest) {
 /**
  * Determines if the resource matches the search filter.
  * @param resource The resource that was created or updated.
+ * @param searchRequest The search request.
  * @param filter One of the filters of a subscription criteria.
  * @returns True if the resource satisfies the search filter.
  */

package/dist/esm/search/match.mjs.map

@@ -1 +1 @@
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{\n        return false;\n      }\n    }\n  }\n  return true;\n}\n\n/**\n * Determines if the resource matches the search filter.\n * @param resource The resource that was created or updated.\n * @param filter One of the filters of a subscription criteria.\n * @returns True if the resource satisfies the search filter.\n */\nfunction matchesSearchFilter(resource: Resource, searchRequest: SearchRequest, filter: Filter): boolean {\n  const searchParam = globalSchema.types[searchRequest.resourceType]?.searchParams?.[filter.code];\n  switch (searchParam?.type) {\n    case 'reference':\n      return matchesReferenceFilter(resource, filter, searchParam);\n    case 'string':\n    case 'uri':\n      return matchesStringFilter(resource, filter, searchParam);\n    case 'token':\n      return matchesTokenFilter(resource, filter, searchParam);\n    case 'date':\n      return matchesDateFilter(resource, filter, searchParam);\n  }\n  // Unknown search parameter or search parameter type\n  // Default 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asToken?: boolean\n): boolean {\n  if (asToken && filterValue.includes('|')) {\n    const [system, code] = filterValue.split('|');\n    return (\n      matchesStringValue(resourceValue, operator, system, false) &&\n      (!code || matchesStringValue(resourceValue, operator, code, false))\n    );\n  }\n  let str = '';\n  if (resourceValue) {\n    if (typeof resourceValue === 'string') {\n      str = resourceValue;\n    } else if (typeof resourceValue === 'object') {\n      str = JSON.stringify(resourceValue);\n    }\n  }\n  return str.toLowerCase().includes(filterValue.toLowerCase());\n}\n\nfunction matchesDateFilter(resource: Resource, filter: Filter, searchParam: SearchParameter): boolean {\n  const resourceValues = evalFhirPath(searchParam.expression as string, resource);\n  const filterValues = filter.value.split(',');\n  const negated = isNegated(filter.operator);\n  for (const resourceValue of resourceValues) {\n    for (const filterValue of filterValues) {\n      const match = 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+{"version":3,"file":"match.mjs","sources":["../../../src/search/match.ts"],"sourcesContent":["import { Reference, Resource, SearchParameter } from '@medplum/fhirtypes';\nimport { evalFhirPath } from '../fhirpath';\nimport { globalSchema } from '../types';\nimport { getSearchParameterDetails, SearchParameterType } from './details';\nimport { Filter, Operator, SearchRequest } from './search';\n\n/**\n * Determines if the resource matches the search request.\n * @param resource The resource that was created or updated.\n * @param searchRequest The subscription criteria as a search request.\n * @returns True if the resource satisfies the search request.\n */\nexport function matchesSearchRequest(resource: Resource, searchRequest: SearchRequest): boolean {\n  if (searchRequest.resourceType !== resource.resourceType) {\n    return false;\n  }\n  if (searchRequest.filters) {\n    for (const filter of searchRequest.filters) {\n      if (!matchesSearchFilter(resource, searchRequest, filter)) {\n        return false;\n      }\n    }\n  }\n  return true;\n}\n\n/**\n * Determines if the resource matches the search filter.\n * @param resource The resource that was created or updated.\n * @param searchRequest The search request.\n * @param filter One of the filters of a subscription criteria.\n * @returns True if the resource satisfies the search filter.\n */\nfunction matchesSearchFilter(resource: Resource, searchRequest: SearchRequest, filter: Filter): boolean {\n  const searchParam = globalSchema.types[searchRequest.resourceType]?.searchParams?.[filter.code];\n  switch (searchParam?.type) {\n    case 'reference':\n      return matchesReferenceFilter(resource, filter, searchParam);\n    case 'string':\n    case 'uri':\n      return matchesStringFilter(resource, filter, searchParam);\n    case 'token':\n      return matchesTokenFilter(resource, filter, searchParam);\n    case 'date':\n      return matchesDateFilter(resource, filter, searchParam);\n  }\n  // Unknown search parameter or search parameter type\n  // Default fail the check\n  return false;\n}\n\nfunction matchesReferenceFilter(resource: Resource, filter: Filter, searchParam: SearchParameter): boolean {\n  const values = evalFhirPath(searchParam.expression as string, resource) as (Reference | string)[];\n  const negated = isNegated(filter.operator);\n\n  if (filter.value === '' && values.length === 0) {\n    // If the filter operator is \"equals\", then the filter matches.\n    // If the filter operator is \"not equals\", then the filter does not match.\n    return filter.operator === Operator.EQUALS;\n  }\n\n  // Normalize the values array into reference strings\n  const references = values.map((value) => (typeof value === 'string' ? value : value.reference));\n\n  for (const filterValue of filter.value.split(',')) {\n    let match = references.includes(filterValue);\n    if (!match && filter.code === '_compartment') {\n      // Backwards compability for compartment search parameter\n      // In previous versions, the resource type was not required in compartment values\n      // So, \"123\" would match \"Patient/123\"\n      // We need to maintain this behavior for backwards compatibility\n      match = references.some((reference) => reference?.endsWith('/' + filterValue));\n    }\n    if (match) {\n      return !negated;\n    }\n  }\n  // If \"not equals\" and no matches, then return true\n  // If \"equals\" and no matches, then return false\n  return negated;\n}\n\nfunction matchesTokenFilter(resource: Resource, filter: Filter, searchParam: SearchParameter): boolean {\n  const details = getSearchParameterDetails(resource.resourceType, searchParam);\n  if (details.type === SearchParameterType.BOOLEAN) {\n    return matchesBooleanFilter(resource, filter, searchParam);\n  } else {\n    return matchesStringFilter(resource, filter, searchParam, true);\n  }\n}\n\nfunction matchesBooleanFilter(resource: Resource, filter: Filter, searchParam: SearchParameter): boolean {\n  const values = evalFhirPath(searchParam.expression as string, resource);\n  const expected = filter.value === 'true';\n  const result = values.includes(expected);\n  return isNegated(filter.operator) ? !result : result;\n}\n\nfunction matchesStringFilter(\n  resource: Resource,\n  filter: Filter,\n  searchParam: SearchParameter,\n  asToken?: boolean\n): boolean {\n  const resourceValues = evalFhirPath(searchParam.expression as string, resource);\n  const filterValues = filter.value.split(',');\n  const negated = isNegated(filter.operator);\n  for (const resourceValue of resourceValues) {\n    for (const filterValue of filterValues) {\n      const match = matchesStringValue(resourceValue, filter.operator, filterValue, asToken);\n      if (match) {\n        return !negated;\n      }\n    }\n  }\n  // If \"not equals\" and no matches, then return true\n  // If \"equals\" and no matches, then return false\n  return negated;\n}\n\nfunction matchesStringValue(\n  resourceValue: unknown,\n  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filterValue of filterValues) {\n      const match = matchesDateValue(resourceValue as string, filter.operator, filterValue);\n      if (match) {\n        return !negated;\n      }\n    }\n  }\n  // If \"not equals\" and no matches, then return true\n  // If \"equals\" and no matches, then return false\n  return negated;\n}\n\nfunction matchesDateValue(resourceValue: string, operator: Operator, filterValue: string): boolean {\n  switch (operator) {\n    case Operator.STARTS_AFTER:\n    case Operator.GREATER_THAN:\n      return resourceValue > filterValue;\n    case Operator.GREATER_THAN_OR_EQUALS:\n      return resourceValue >= filterValue;\n    case Operator.ENDS_BEFORE:\n    case Operator.LESS_THAN:\n      return resourceValue < filterValue;\n    case Operator.LESS_THAN_OR_EQUALS:\n      return resourceValue <= filterValue;\n    case Operator.EQUALS:\n    case Operator.NOT_EQUALS:\n      return resourceValue === filterValue;\n  }\n  return false;\n}\n\nfunction isNegated(operator: 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package/dist/esm/search/search.mjs

@@ -146,7 +146,7 @@ function parseKeyValue(searchRequest, key, value) {
             searchRequest.total = value;
             break;
         case '_summary':
-            searchRequest.total = 'estimate';
+            searchRequest.total = 'accurate';
             searchRequest.count = 0;
             break;
         case '_include': {
@@ -327,7 +327,7 @@ function addFilter(searchRequest, filter) {
 /**
  * Formats a search definition object into a query string.
  * Note: The return value does not include the resource type.
- * @param {!SearchRequest} definition The search definition.
+ * @param definition The search definition.
  * @returns Formatted URL.
  */
 function formatSearchQuery(definition) {

package/dist/esm/search/search.mjs.map

@@ -1 +1 @@
-{"version":3,"file":"search.mjs","sources":["../../../src/search/search.ts"],"sourcesContent":["import { Resource, ResourceType, SearchParameter } from '@medplum/fhirtypes';\nimport { globalSchema } from '../types';\nimport { OperationOutcomeError, badRequest } from '../outcomes';\n\nexport const DEFAULT_SEARCH_COUNT = 20;\n\nexport interface SearchRequest<T extends Resource = Resource> {\n  readonly resourceType: T['resourceType'];\n  filters?: Filter[];\n  sortRules?: SortRule[];\n  offset?: number;\n  count?: number;\n  fields?: string[];\n  name?: string;\n  total?: 'none' | 'estimate' | 'accurate';\n  include?: IncludeTarget[];\n  revInclude?: IncludeTarget[];\n}\n\nexport interface Filter {\n  code: string;\n  operator: Operator;\n  value: string;\n  unitSystem?: string;\n  unitCode?: string;\n}\n\nexport interface SortRule {\n  code: string;\n  descending?: boolean;\n}\n\nexport interface IncludeTarget {\n  resourceType: string;\n  searchParam: string;\n  targetType?: string;\n  modifier?: string;\n}\n\n/**\n * Search operators.\n * These operators represent \"modifiers\" and \"prefixes\" in FHIR search.\n * See: https://www.hl7.org/fhir/search.html\n */\nexport enum Operator {\n  EQUALS = 'eq',\n  NOT_EQUALS = 'ne',\n\n  // Numbers\n  GREATER_THAN = 'gt',\n  LESS_THAN = 'lt',\n  GREATER_THAN_OR_EQUALS = 'ge',\n  LESS_THAN_OR_EQUALS = 'le',\n\n  // Dates\n  STARTS_AFTER = 'sa',\n  ENDS_BEFORE = 'eb',\n  APPROXIMATELY = 'ap',\n\n  // String\n  CONTAINS = 'contains',\n  EXACT = 'exact',\n\n  // Token\n  TEXT = 'text',\n  NOT = 'not',\n  ABOVE = 'above',\n  BELOW = 'below',\n  IN = 'in',\n  NOT_IN = 'not-in',\n  OF_TYPE = 'of-type',\n\n  // All\n  MISSING = 'missing',\n\n  // Reference\n  IDENTIFIER = 'identifier',\n\n  // _include and _revinclude\n  ITERATE = 'iterate',\n}\n\n/**\n * Parameter names may specify a modifier as a suffix.\n * The modifiers are separated from the parameter name by a colon.\n * See: https://www.hl7.org/fhir/search.html#modifiers\n */\nconst MODIFIER_OPERATORS: Record<string, Operator> = {\n  contains: Operator.CONTAINS,\n  exact: Operator.EXACT,\n  above: Operator.ABOVE,\n  below: Operator.BELOW,\n  text: Operator.TEXT,\n  not: Operator.NOT,\n  in: Operator.IN,\n  'not-in': Operator.NOT_IN,\n  'of-type': Operator.OF_TYPE,\n  missing: Operator.MISSING,\n  identifier: Operator.IDENTIFIER,\n  iterate: Operator.ITERATE,\n};\n\n/**\n * For the ordered parameter types of number, date, and quantity,\n * a prefix to the parameter value may be used to control the nature\n * of the matching.\n * See: https://www.hl7.org/fhir/search.html#prefix\n */\nconst PREFIX_OPERATORS: Record<string, Operator> = {\n  eq: Operator.EQUALS,\n  ne: Operator.NOT_EQUALS,\n  lt: Operator.LESS_THAN,\n  le: Operator.LESS_THAN_OR_EQUALS,\n  gt: Operator.GREATER_THAN,\n  ge: Operator.GREATER_THAN_OR_EQUALS,\n  sa: Operator.STARTS_AFTER,\n  eb: Operator.ENDS_BEFORE,\n  ap: Operator.APPROXIMATELY,\n};\n\n/**\n * Parses a search URL into a search request.\n * @param resourceType The FHIR resource type.\n * @param query The collection of query string parameters.\n * @returns A parsed SearchRequest.\n */\nexport function parseSearchRequest<T extends Resource = Resource>(\n  resourceType: T['resourceType'],\n  query: Record<string, string[] | string | undefined>\n): SearchRequest<T> {\n  const queryArray: [string, string][] = [];\n  for (const [key, value] of Object.entries(query)) {\n    if (Array.isArray(value)) {\n      for (let i = 0; i < value.length; i++) {\n        queryArray.push([key, value[i]]);\n      }\n    } else {\n      queryArray.push([key, value || '']);\n    }\n  }\n  return parseSearchImpl(resourceType, queryArray);\n}\n\n/**\n * Parses a search URL into a search request.\n * @param url The search URL.\n * @returns A parsed SearchRequest.\n */\nexport function parseSearchUrl<T extends Resource = Resource>(url: URL): SearchRequest<T> {\n  const resourceType = url.pathname.split('/').filter(Boolean).pop() as ResourceType;\n  return parseSearchImpl<T>(resourceType, url.searchParams.entries());\n}\n\n/**\n * Parses a URL string into a SearchRequest.\n * @param url The URL to parse.\n * @returns Parsed search definition.\n */\nexport function parseSearchDefinition<T extends Resource = Resource>(url: string): SearchRequest<T> {\n  return parseSearchUrl<T>(new URL(url, 'https://example.com/'));\n}\n\nfunction parseSearchImpl<T extends Resource = Resource>(\n  resourceType: T['resourceType'],\n  query: [string, string][] | IterableIterator<[string, string]>\n): SearchRequest<T> {\n  const searchRequest: SearchRequest<T> = {\n    resourceType,\n  };\n\n  for (const [key, value] of query) {\n    parseKeyValue(searchRequest, key, value);\n  }\n\n  return searchRequest;\n}\n\nfunction parseKeyValue(searchRequest: SearchRequest, key: string, value: string): void {\n  let code;\n  let modifier;\n\n  const colonIndex = key.indexOf(':');\n  if (colonIndex >= 0) {\n    code = key.substring(0, colonIndex);\n    modifier = key.substring(colonIndex + 1);\n  } else {\n    code = key;\n    modifier = '';\n  }\n\n  switch (code) {\n    case '_sort':\n      parseSortRule(searchRequest, value);\n      break;\n\n    case '_count':\n      searchRequest.count = parseInt(value);\n      break;\n\n    case '_offset':\n      searchRequest.offset = parseInt(value);\n      break;\n\n    case '_total':\n      searchRequest.total = value as 'none' | 'estimate' | 'accurate';\n      break;\n\n    case '_summary':\n      searchRequest.total = 'estimate';\n      searchRequest.count = 0;\n      break;\n\n    case '_include': {\n      const target = parseIncludeTarget(value);\n      if (modifier === 'iterate') {\n        target.modifier = Operator.ITERATE;\n      }\n      if (searchRequest.include) {\n        searchRequest.include.push(target);\n      } else {\n        searchRequest.include = [target];\n      }\n      break;\n    }\n\n    case '_revinclude': {\n      const target = parseIncludeTarget(value);\n      if (modifier === 'iterate') {\n        target.modifier = Operator.ITERATE;\n      }\n      if (searchRequest.revInclude) {\n        searchRequest.revInclude.push(target);\n      } else {\n        searchRequest.revInclude = [target];\n      }\n      break;\n    }\n\n    case '_fields':\n      searchRequest.fields = value.split(',');\n      break;\n\n    default: {\n      const param = globalSchema.types[searchRequest.resourceType]?.searchParams?.[code];\n      if (param) {\n        parseParameter(searchRequest, param, modifier, value);\n      } else {\n        parseUnknownParameter(searchRequest, code, modifier, value);\n      }\n    }\n  }\n}\n\nfunction parseSortRule(searchRequest: SearchRequest, value: string): void {\n  for (const field of value.split(',')) {\n    let code;\n    let descending = false;\n    if (field.startsWith('-')) {\n      code = field.substring(1);\n      descending = true;\n    } else {\n      code = field;\n    }\n    if (!searchRequest.sortRules) {\n      searchRequest.sortRules = [];\n    }\n    searchRequest.sortRules.push({ code, descending });\n  }\n}\n\nfunction parseParameter(\n  searchRequest: SearchRequest,\n  searchParam: SearchParameter,\n  modifier: string,\n  value: string\n): void {\n  if (modifier === 'missing') {\n    addFilter(searchRequest, {\n      code: searchParam.code as string,\n      operator: Operator.MISSING,\n      value,\n    });\n    return;\n  }\n  switch (searchParam.type) {\n    case 'number':\n    case 'date':\n      parsePrefixType(searchRequest, searchParam, value);\n      break;\n    case 'reference':\n    case 'string':\n    case 'token':\n    case 'uri':\n      parseModifierType(searchRequest, searchParam, modifier, value);\n      break;\n    case 'quantity':\n      parseQuantity(searchRequest, searchParam, value);\n      break;\n  }\n}\n\nfunction parsePrefixType(searchRequest: SearchRequest, param: SearchParameter, input: string): void {\n  const { operator, value } = parsePrefix(input);\n  addFilter(searchRequest, {\n    code: param.code as string,\n    operator,\n    value,\n  });\n}\n\nfunction parseModifierType(\n  searchRequest: SearchRequest,\n  param: SearchParameter,\n  modifier: string,\n  value: string\n): void {\n  addFilter(searchRequest, {\n    code: param.code as string,\n    operator: parseModifier(modifier),\n    value,\n  });\n}\n\nfunction parseQuantity(searchRequest: SearchRequest, param: SearchParameter, input: string): void {\n  const [prefixNumber, unitSystem, unitCode] = input.split('|');\n  const { operator, value } = parsePrefix(prefixNumber);\n  addFilter(searchRequest, {\n    code: param.code as string,\n    operator,\n    value,\n    unitSystem,\n    unitCode,\n  });\n}\n\nfunction parseUnknownParameter(searchRequest: SearchRequest, code: string, modifier: string, value: string): void {\n  let operator = Operator.EQUALS;\n  if (modifier) {\n    operator = modifier as Operator;\n  } else if (value.length >= 2) {\n    const prefix = value.substring(0, 2);\n    if (prefix in PREFIX_OPERATORS) {\n      if (value.length === 2 || value.at(2)?.match(/\\d/)) {\n        operator = prefix as Operator;\n        value = value.substring(prefix.length);\n      }\n    }\n  }\n\n  addFilter(searchRequest, {\n    code,\n    operator,\n    value,\n  });\n}\n\nfunction parsePrefix(input: string): { operator: Operator; value: string } {\n  const prefix = input.substring(0, 2);\n  const prefixOperator = PREFIX_OPERATORS[prefix];\n  if (prefixOperator) {\n    return { operator: prefixOperator, value: input.substring(2) };\n  }\n  return { operator: Operator.EQUALS, value: input };\n}\n\nfunction parseModifier(modifier: string): Operator {\n  return MODIFIER_OPERATORS[modifier] || Operator.EQUALS;\n}\n\nfunction parseIncludeTarget(input: string): IncludeTarget {\n  const parts = input.split(':');\n\n  parts.forEach((p) => {\n    if (p === '*') {\n      throw new OperationOutcomeError(badRequest(`'*' is not supported as a value for search inclusion parameters`));\n    }\n  });\n\n  if (parts.length === 1) {\n    // Full wildcard, not currently supported\n    throw new OperationOutcomeError(\n      badRequest(`Invalid include value '${input}': must be of the form ResourceType:search-parameter`)\n    );\n  } else if (parts.length === 2) {\n    return {\n      resourceType: parts[0],\n      searchParam: parts[1],\n    };\n  } else if (parts.length === 3) {\n    return {\n      resourceType: parts[0],\n      searchParam: parts[1],\n      targetType: parts[2],\n    };\n  } else {\n    throw new OperationOutcomeError(badRequest(`Invalid include value '${input}'`));\n  }\n}\n\nfunction addFilter(searchRequest: SearchRequest, filter: Filter): void {\n  if (searchRequest.filters) {\n    searchRequest.filters.push(filter);\n  } else {\n    searchRequest.filters = [filter];\n  }\n}\n\n/**\n * Formats a search definition object into a query string.\n * Note: The return value does not include the resource type.\n * @param {!SearchRequest} definition The search definition.\n * @returns Formatted URL.\n */\nexport function formatSearchQuery(definition: SearchRequest): string {\n  const params: string[] = [];\n\n  if (definition.fields) {\n    params.push('_fields=' + definition.fields.join(','));\n  }\n\n  if (definition.filters) {\n    definition.filters.forEach((filter) => params.push(formatFilter(filter)));\n  }\n\n  if (definition.sortRules && definition.sortRules.length > 0) {\n    params.push(formatSortRules(definition.sortRules));\n  }\n\n  if (definition.offset !== undefined) {\n    params.push('_offset=' + definition.offset);\n  }\n\n  if (definition.count !== undefined) {\n    params.push('_count=' + definition.count);\n  }\n\n  if (definition.total !== undefined) {\n    params.push('_total=' + definition.total);\n  }\n\n  if (params.length === 0) {\n    return '';\n  }\n\n  params.sort();\n  return '?' + params.join('&');\n}\n\nfunction formatFilter(filter: Filter): string {\n  const modifier = filter.operator in MODIFIER_OPERATORS ? 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+{"version":3,"file":"search.mjs","sources":["../../../src/search/search.ts"],"sourcesContent":["import { Resource, ResourceType, SearchParameter } from '@medplum/fhirtypes';\nimport { globalSchema } from '../types';\nimport { OperationOutcomeError, badRequest } from '../outcomes';\n\nexport const DEFAULT_SEARCH_COUNT = 20;\n\nexport interface SearchRequest<T extends Resource = Resource> {\n  readonly resourceType: T['resourceType'];\n  filters?: Filter[];\n  sortRules?: SortRule[];\n  offset?: number;\n  count?: number;\n  fields?: string[];\n  name?: string;\n  total?: 'none' | 'estimate' | 'accurate';\n  include?: IncludeTarget[];\n  revInclude?: IncludeTarget[];\n}\n\nexport interface Filter {\n  code: string;\n  operator: Operator;\n  value: string;\n  unitSystem?: string;\n  unitCode?: string;\n}\n\nexport interface SortRule {\n  code: string;\n  descending?: boolean;\n}\n\nexport interface IncludeTarget {\n  resourceType: string;\n  searchParam: string;\n  targetType?: string;\n  modifier?: string;\n}\n\n/**\n * Search operators.\n * These operators represent \"modifiers\" and \"prefixes\" in FHIR search.\n * See: https://www.hl7.org/fhir/search.html\n */\nexport enum Operator {\n  EQUALS = 'eq',\n  NOT_EQUALS = 'ne',\n\n  // Numbers\n  GREATER_THAN = 'gt',\n  LESS_THAN = 'lt',\n  GREATER_THAN_OR_EQUALS = 'ge',\n  LESS_THAN_OR_EQUALS = 'le',\n\n  // Dates\n  STARTS_AFTER = 'sa',\n  ENDS_BEFORE = 'eb',\n  APPROXIMATELY = 'ap',\n\n  // String\n  CONTAINS = 'contains',\n  EXACT = 'exact',\n\n  // Token\n  TEXT = 'text',\n  NOT = 'not',\n  ABOVE = 'above',\n  BELOW = 'below',\n  IN = 'in',\n  NOT_IN = 'not-in',\n  OF_TYPE = 'of-type',\n\n  // All\n  MISSING = 'missing',\n\n  // Reference\n  IDENTIFIER = 'identifier',\n\n  // _include and _revinclude\n  ITERATE = 'iterate',\n}\n\n/**\n * Parameter names may specify a modifier as a suffix.\n * The modifiers are separated from the parameter name by a colon.\n * See: https://www.hl7.org/fhir/search.html#modifiers\n */\nconst MODIFIER_OPERATORS: Record<string, Operator> = {\n  contains: Operator.CONTAINS,\n  exact: Operator.EXACT,\n  above: Operator.ABOVE,\n  below: Operator.BELOW,\n  text: Operator.TEXT,\n  not: Operator.NOT,\n  in: Operator.IN,\n  'not-in': Operator.NOT_IN,\n  'of-type': Operator.OF_TYPE,\n  missing: Operator.MISSING,\n  identifier: Operator.IDENTIFIER,\n  iterate: Operator.ITERATE,\n};\n\n/**\n * For the ordered parameter types of number, date, and quantity,\n * a prefix to the parameter value may be used to control the nature\n * of the matching.\n * See: https://www.hl7.org/fhir/search.html#prefix\n */\nconst PREFIX_OPERATORS: Record<string, Operator> = {\n  eq: Operator.EQUALS,\n  ne: Operator.NOT_EQUALS,\n  lt: Operator.LESS_THAN,\n  le: Operator.LESS_THAN_OR_EQUALS,\n  gt: Operator.GREATER_THAN,\n  ge: Operator.GREATER_THAN_OR_EQUALS,\n  sa: Operator.STARTS_AFTER,\n  eb: Operator.ENDS_BEFORE,\n  ap: Operator.APPROXIMATELY,\n};\n\n/**\n * Parses a search URL into a search request.\n * @param resourceType The FHIR resource type.\n * @param query The collection of query string parameters.\n * @returns A parsed SearchRequest.\n */\nexport function parseSearchRequest<T extends Resource = Resource>(\n  resourceType: T['resourceType'],\n  query: Record<string, string[] | string | undefined>\n): SearchRequest<T> {\n  const queryArray: [string, string][] = [];\n  for (const [key, value] of Object.entries(query)) {\n    if (Array.isArray(value)) {\n      for (let i = 0; i < value.length; i++) {\n        queryArray.push([key, value[i]]);\n      }\n    } else {\n      queryArray.push([key, value || '']);\n    }\n  }\n  return parseSearchImpl(resourceType, queryArray);\n}\n\n/**\n * Parses a search URL into a search request.\n * @param url The search URL.\n * @returns A parsed SearchRequest.\n */\nexport function parseSearchUrl<T extends Resource = Resource>(url: URL): SearchRequest<T> {\n  const resourceType = url.pathname.split('/').filter(Boolean).pop() as ResourceType;\n  return parseSearchImpl<T>(resourceType, url.searchParams.entries());\n}\n\n/**\n * Parses a URL string into a SearchRequest.\n * @param url The URL to parse.\n * @returns Parsed search definition.\n */\nexport function parseSearchDefinition<T extends Resource = Resource>(url: string): SearchRequest<T> {\n  return parseSearchUrl<T>(new URL(url, 'https://example.com/'));\n}\n\nfunction parseSearchImpl<T extends Resource = Resource>(\n  resourceType: T['resourceType'],\n  query: [string, string][] | IterableIterator<[string, string]>\n): SearchRequest<T> {\n  const searchRequest: SearchRequest<T> = {\n    resourceType,\n  };\n\n  for (const [key, value] of query) {\n    parseKeyValue(searchRequest, key, value);\n  }\n\n  return searchRequest;\n}\n\nfunction parseKeyValue(searchRequest: SearchRequest, key: string, value: string): void {\n  let code;\n  let modifier;\n\n  const colonIndex = key.indexOf(':');\n  if (colonIndex >= 0) {\n    code = key.substring(0, colonIndex);\n    modifier = key.substring(colonIndex + 1);\n  } else {\n    code = key;\n    modifier = '';\n  }\n\n  switch (code) {\n    case '_sort':\n      parseSortRule(searchRequest, value);\n      break;\n\n    case '_count':\n      searchRequest.count = parseInt(value);\n      break;\n\n    case '_offset':\n      searchRequest.offset = parseInt(value);\n      break;\n\n    case '_total':\n      searchRequest.total = value as 'none' | 'estimate' | 'accurate';\n      break;\n\n    case '_summary':\n      searchRequest.total = 'accurate';\n      searchRequest.count = 0;\n      break;\n\n    case '_include': {\n      const target = parseIncludeTarget(value);\n      if (modifier === 'iterate') {\n        target.modifier = Operator.ITERATE;\n      }\n      if (searchRequest.include) {\n        searchRequest.include.push(target);\n      } else {\n        searchRequest.include = [target];\n      }\n      break;\n    }\n\n    case '_revinclude': {\n      const target = parseIncludeTarget(value);\n      if (modifier === 'iterate') {\n        target.modifier = Operator.ITERATE;\n      }\n      if (searchRequest.revInclude) {\n        searchRequest.revInclude.push(target);\n      } else {\n        searchRequest.revInclude = [target];\n      }\n      break;\n    }\n\n    case '_fields':\n      searchRequest.fields = value.split(',');\n      break;\n\n    default: {\n      const param = globalSchema.types[searchRequest.resourceType]?.searchParams?.[code];\n      if (param) {\n        parseParameter(searchRequest, param, modifier, value);\n      } else {\n        parseUnknownParameter(searchRequest, code, modifier, value);\n      }\n    }\n  }\n}\n\nfunction parseSortRule(searchRequest: SearchRequest, value: string): void {\n  for (const field of value.split(',')) {\n    let code;\n    let descending = false;\n    if (field.startsWith('-')) {\n      code = field.substring(1);\n      descending = true;\n    } else {\n      code = field;\n    }\n    if (!searchRequest.sortRules) {\n      searchRequest.sortRules = [];\n    }\n    searchRequest.sortRules.push({ code, descending });\n  }\n}\n\nfunction parseParameter(\n  searchRequest: SearchRequest,\n  searchParam: SearchParameter,\n  modifier: string,\n  value: string\n): void {\n  if (modifier === 'missing') {\n    addFilter(searchRequest, {\n      code: searchParam.code as string,\n      operator: Operator.MISSING,\n      value,\n    });\n    return;\n  }\n  switch (searchParam.type) {\n    case 'number':\n    case 'date':\n      parsePrefixType(searchRequest, searchParam, value);\n      break;\n    case 'reference':\n    case 'string':\n    case 'token':\n    case 'uri':\n      parseModifierType(searchRequest, searchParam, modifier, value);\n      break;\n    case 'quantity':\n      parseQuantity(searchRequest, searchParam, value);\n      break;\n  }\n}\n\nfunction parsePrefixType(searchRequest: SearchRequest, param: SearchParameter, input: string): void {\n  const { operator, value } = parsePrefix(input);\n  addFilter(searchRequest, {\n    code: param.code as string,\n    operator,\n    value,\n  });\n}\n\nfunction parseModifierType(\n  searchRequest: SearchRequest,\n  param: SearchParameter,\n  modifier: string,\n  value: string\n): void {\n  addFilter(searchRequest, {\n    code: param.code as string,\n    operator: parseModifier(modifier),\n    value,\n  });\n}\n\nfunction parseQuantity(searchRequest: SearchRequest, param: SearchParameter, input: string): void {\n  const [prefixNumber, unitSystem, unitCode] = input.split('|');\n  const { operator, value } = parsePrefix(prefixNumber);\n  addFilter(searchRequest, {\n    code: param.code as string,\n    operator,\n    value,\n    unitSystem,\n    unitCode,\n  });\n}\n\nfunction parseUnknownParameter(searchRequest: SearchRequest, code: string, modifier: string, value: string): void {\n  let operator = Operator.EQUALS;\n  if (modifier) {\n    operator = modifier as Operator;\n  } else if (value.length >= 2) 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package/dist/esm/sftp.mjs

@@ -8,7 +8,6 @@ function streamToBuffer(stream) {
     return new Promise((resolve, reject) => {
         stream.on('data', (chunk) => chunks.push(Buffer.from(chunk)));
         stream.on('error', (err) => {
-            console.error(err.message);
             stream.destroy();
             reject(err);
         });

package/dist/esm/sftp.mjs.map

@@ -1 +1 @@
-{"version":3,"file":"sftp.mjs","sources":["../../src/sftp.ts"],"sourcesContent":["import { Readable } from 'stream';\n\n/**\n * Reads data from a Readable stream and returns a Promise that resolves with a Buffer containing all the data.\n * @param stream - The Readable stream to read from.\n * @returns A Promise that resolves with a Buffer containing all the data from the Readable stream.\n */\nexport function streamToBuffer(stream: Readable): Promise<Buffer> {\n  const chunks: Uint8Array[] = [];\n  return new Promise<Buffer>((resolve, reject) => {\n    stream.on('data', (chunk: Uint8Array) => chunks.push(Buffer.from(chunk)));\n    stream.on('error', (err: Error) => {\n      console.error(err.message);\n      stream.destroy();\n      reject(err);\n    });\n    stream.on('end', () => {\n      resolve(Buffer.concat(chunks));\n    });\n    stream.on('close', () => {\n      stream.destroy();\n    });\n  });\n}\n"],"names":[],"mappings":"AAEA;;;;AAIG;AACG,SAAU,cAAc,CAAC,MAAgB,EAAA;IAC7C,MAAM,MAAM,GAAiB,EAAE,CAAC;IAChC,OAAO,IAAI,OAAO,CAAS,CAAC,OAAO,EAAE,MAAM,KAAI;QAC7C,MAAM,CAAC,EAAE,CAAC,MAAM,EAAE,CAAC,KAAiB,KAAK,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QAC1E,MAAM,CAAC,EAAE,CAAC,OAAO,EAAE,CAAC,GAAU,KAAI;AAChC,YAAA,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;YAC3B,MAAM,CAAC,OAAO,EAAE,CAAC;YACjB,MAAM,CAAC,GAAG,CAAC,CAAC;AACd,SAAC,CAAC,CAAC;AACH,QAAA,MAAM,CAAC,EAAE,CAAC,KAAK,EAAE,MAAK;YACpB,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC;AACjC,SAAC,CAAC,CAAC;AACH,QAAA,MAAM,CAAC,EAAE,CAAC,OAAO,EAAE,MAAK;YACtB,MAAM,CAAC,OAAO,EAAE,CAAC;AACnB,SAAC,CAAC,CAAC;AACL,KAAC,CAAC,CAAC;AACL;;;;"}
+{"version":3,"file":"sftp.mjs","sources":["../../src/sftp.ts"],"sourcesContent":["import { Readable } from 'stream';\n\n/**\n * Reads data from a Readable stream and returns a Promise that resolves with a Buffer containing all the data.\n * @param stream - The Readable stream to read from.\n * @returns A Promise that resolves with a Buffer containing all the data from the Readable stream.\n */\nexport function streamToBuffer(stream: Readable): Promise<Buffer> {\n  const chunks: Uint8Array[] = [];\n  return new Promise<Buffer>((resolve, reject) => {\n    stream.on('data', (chunk: Uint8Array) => chunks.push(Buffer.from(chunk)));\n    stream.on('error', (err: Error) => {\n      stream.destroy();\n      reject(err);\n    });\n    stream.on('end', () => {\n      resolve(Buffer.concat(chunks));\n    });\n    stream.on('close', () => {\n      stream.destroy();\n    });\n  });\n}\n"],"names":[],"mappings":"AAEA;;;;AAIG;AACG,SAAU,cAAc,CAAC,MAAgB,EAAA;IAC7C,MAAM,MAAM,GAAiB,EAAE,CAAC;IAChC,OAAO,IAAI,OAAO,CAAS,CAAC,OAAO,EAAE,MAAM,KAAI;QAC7C,MAAM,CAAC,EAAE,CAAC,MAAM,EAAE,CAAC,KAAiB,KAAK,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QAC1E,MAAM,CAAC,EAAE,CAAC,OAAO,EAAE,CAAC,GAAU,KAAI;YAChC,MAAM,CAAC,OAAO,EAAE,CAAC;YACjB,MAAM,CAAC,GAAG,CAAC,CAAC;AACd,SAAC,CAAC,CAAC;AACH,QAAA,MAAM,CAAC,EAAE,CAAC,KAAK,EAAE,MAAK;YACpB,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC;AACjC,SAAC,CAAC,CAAC;AACH,QAAA,MAAM,CAAC,EAAE,CAAC,OAAO,EAAE,MAAK;YACtB,MAAM,CAAC,OAAO,EAAE,CAAC;AACnB,SAAC,CAAC,CAAC;AACL,KAAC,CAAC,CAAC;AACL;;;;"}

package/dist/esm/storage.mjs

@@ -42,6 +42,7 @@ class MemoryStorage {
     }
     /**
      * Returns the number of key/value pairs.
+     * @returns The number of key/value pairs.
      */
     get length() {
         return this.data.size;
@@ -54,12 +55,16 @@ class MemoryStorage {
     }
     /**
      * Returns the current value associated with the given key, or null if the given key does not exist.
+     * @param key The specified storage key.
+     * @returns The current value associated with the given key, or null if the given key does not exist.
      */
     getItem(key) {
         return this.data.get(key) ?? null;
     }
     /**
      * Sets the value of the pair identified by key to value, creating a new key/value pair if none existed for key previously.
+     * @param key The storage key.
+     * @param value The new value.
      */
     setItem(key, value) {
         if (value) {
@@ -71,12 +76,15 @@ class MemoryStorage {
     }
     /**
      * Removes the key/value pair with the given key, if a key/value pair with the given key exists.
+     * @param key The storage key.
      */
     removeItem(key) {
         this.data.delete(key);
     }
     /**
      * Returns the name of the nth key, or null if n is greater than or equal to the number of key/value pairs.
+     * @param index The numeric index.
+     * @returns The nth key.
      */
     key(index) {
         return Array.from(this.data.keys())[index];

package/dist/esm/storage.mjs.map

@@ -1 +1 @@
-{"version":3,"file":"storage.mjs","sources":["../../src/storage.ts"],"sourcesContent":["import { stringify } from './utils';\n\n/**\n * The ClientStorage class is a utility class for storing strings and objects.\n *\n * When using MedplumClient in the browser, it will be backed by browser localStorage.\n *\n * When Using MedplumClient in the server, it will be backed by the MemoryStorage class.  For example, the Medplum CLI uses `FileSystemStorage`.\n */\nexport class ClientStorage {\n  private readonly storage: Storage;\n\n  constructor() {\n    this.storage = typeof localStorage !== 'undefined' ? localStorage : new MemoryStorage();\n  }\n\n  clear(): void {\n    this.storage.clear();\n  }\n\n  getString(key: string): string | undefined {\n    return this.storage.getItem(key) || undefined;\n  }\n\n  setString(key: string, value: string | undefined): void {\n    if (value) {\n      this.storage.setItem(key, value);\n    } else {\n      this.storage.removeItem(key);\n    }\n  }\n\n  getObject<T>(key: string): T | undefined {\n    const str = this.getString(key);\n    return str ? (JSON.parse(str) as T) : undefined;\n  }\n\n  setObject<T>(key: string, value: T): void {\n    this.setString(key, value ? stringify(value) : undefined);\n  }\n}\n\n/**\n * The MemoryStorage class is a minimal in-memory implementation of the Storage interface.\n */\nexport class MemoryStorage implements Storage {\n  private data: Map<string, string>;\n\n  constructor() {\n    this.data = new Map<string, string>();\n  }\n\n  /**\n   * Returns the number of key/value pairs.\n   */\n  get length(): number {\n    return this.data.size;\n  }\n\n  /**\n   * Removes all key/value pairs, if there are any.\n   */\n  clear(): void {\n    this.data.clear();\n  }\n\n  /**\n   * Returns the current value associated with the given key, or null if the given key does not exist.\n   */\n  getItem(key: string): string | null {\n    return this.data.get(key) ?? null;\n  }\n\n  /**\n   * Sets the value of the pair identified by key to value, creating a new key/value pair if none existed for key previously.\n   */\n  setItem(key: string, value: string | null): void {\n    if (value) {\n      this.data.set(key, value);\n    } else {\n      this.data.delete(key);\n    }\n  }\n\n  /**\n   * Removes the key/value pair with the given key, if a key/value pair with the given key exists.\n   */\n  removeItem(key: string): void {\n    this.data.delete(key);\n  }\n\n  /**\n   * Returns the name of the nth key, or null if n is greater than or equal to the number of key/value pairs.\n   */\n  key(index: number): string | null {\n    return Array.from(this.data.keys())[index];\n  }\n}\n"],"names":[],"mappings":";;AAEA;;;;;;AAMG;MACU,aAAa,CAAA;AAGxB,IAAA,WAAA,GAAA;AACE,QAAA,IAAI,CAAC,OAAO,GAAG,OAAO,YAAY,KAAK,WAAW,GAAG,YAAY,GAAG,IAAI,aAAa,EAAE,CAAC;KACzF;IAED,KAAK,GAAA;AACH,QAAA,IAAI,CAAC,OAAO,CAAC,KAAK,EAAE,CAAC;KACtB;AAED,IAAA,SAAS,CAAC,GAAW,EAAA;QACnB,OAAO,IAAI,CAAC,OAAO,CAAC,OAAO,CAAC,GAAG,CAAC,IAAI,SAAS,CAAC;KAC/C;IAED,SAAS,CAAC,GAAW,EAAE,KAAyB,EAAA;AAC9C,QAAA,IAAI,KAAK,EAAE;YACT,IAAI,CAAC,OAAO,CAAC,OAAO,CAAC,GAAG,EAAE,KAAK,CAAC,CAAC;AAClC,SAAA;AAAM,aAAA;AACL,YAAA,IAAI,CAAC,OAAO,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC;AAC9B,SAAA;KACF;AAED,IAAA,SAAS,CAAI,GAAW,EAAA;QACtB,MAAM,GAAG,GAAG,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC;AAChC,QAAA,OAAO,GAAG,GAAI,IAAI,CAAC,KAAK,CAAC,GAAG,CAAO,GAAG,SAAS,CAAC;KACjD;IAED,SAAS,CAAI,GAAW,EAAE,KAAQ,EAAA;AAChC,QAAA,IAAI,CAAC,SAAS,CAAC,GAAG,EAAE,KAAK,GAAG,SAAS,CAAC,KAAK,CAAC,GAAG,SAAS,CAAC,CAAC;KAC3D;AACF,CAAA;AAED;;AAEG;MACU,aAAa,CAAA;AAGxB,IAAA,WAAA,GAAA;AACE,QAAA,IAAI,CAAC,IAAI,GAAG,IAAI,GAAG,EAAkB,CAAC;KACvC;AAED;;AAEG;AACH,IAAA,IAAI,MAAM,GAAA;AACR,QAAA,OAAO,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC;KACvB;AAED;;AAEG;IACH,KAAK,GAAA;AACH,QAAA,IAAI,CAAC,IAAI,CAAC,KAAK,EAAE,CAAC;KACnB;AAED;;AAEG;AACH,IAAA,OAAO,CAAC,GAAW,EAAA;QACjB,OAAO,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,IAAI,CAAC;KACnC;AAED;;AAEG;IACH,OAAO,CAAC,GAAW,EAAE,KAAoB,EAAA;AACvC,QAAA,IAAI,KAAK,EAAE;YACT,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,KAAK,CAAC,CAAC;AAC3B,SAAA;AAAM,aAAA;AACL,YAAA,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;AACvB,SAAA;KACF;AAED;;AAEG;AACH,IAAA,UAAU,CAAC,GAAW,EAAA;AACpB,QAAA,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;KACvB;AAED;;AAEG;AACH,IAAA,GAAG,CAAC,KAAa,EAAA;AACf,QAAA,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC;KAC5C;AACF;;;;"}
+{"version":3,"file":"storage.mjs","sources":["../../src/storage.ts"],"sourcesContent":["import { stringify } from './utils';\n\n/**\n * The ClientStorage class is a utility class for storing strings and objects.\n *\n * When using MedplumClient in the browser, it will be backed by browser localStorage.\n *\n * When Using MedplumClient in the server, it will be backed by the MemoryStorage class.  For example, the Medplum CLI uses `FileSystemStorage`.\n */\nexport class ClientStorage {\n  private readonly storage: Storage;\n\n  constructor() {\n    this.storage = typeof localStorage !== 'undefined' ? localStorage : new MemoryStorage();\n  }\n\n  clear(): void {\n    this.storage.clear();\n  }\n\n  getString(key: string): string | undefined {\n    return this.storage.getItem(key) || undefined;\n  }\n\n  setString(key: string, value: string | undefined): void {\n    if (value) {\n      this.storage.setItem(key, value);\n    } else {\n      this.storage.removeItem(key);\n    }\n  }\n\n  getObject<T>(key: string): T | undefined {\n    const str = this.getString(key);\n    return str ? (JSON.parse(str) as T) : undefined;\n  }\n\n  setObject<T>(key: string, value: T): void {\n    this.setString(key, value ? stringify(value) : undefined);\n  }\n}\n\n/**\n * The MemoryStorage class is a minimal in-memory implementation of the Storage interface.\n */\nexport class MemoryStorage implements Storage {\n  private data: Map<string, string>;\n\n  constructor() {\n    this.data = new Map<string, string>();\n  }\n\n  /**\n   * Returns the number of key/value pairs.\n   * @returns The number of key/value pairs.\n   */\n  get length(): number {\n    return this.data.size;\n  }\n\n  /**\n   * Removes all key/value pairs, if there are any.\n   */\n  clear(): void {\n    this.data.clear();\n  }\n\n  /**\n   * Returns the current value associated with the given key, or null if the given key does not exist.\n   * @param key The specified storage key.\n   * @returns The current value associated with the given key, or null if the given key does not exist.\n   */\n  getItem(key: string): string | null {\n    return this.data.get(key) ?? null;\n  }\n\n  /**\n   * Sets the value of the pair identified by key to value, creating a new key/value pair if none existed for key previously.\n   * @param key The storage key.\n   * @param value The new value.\n   */\n  setItem(key: string, value: string | null): void {\n    if (value) {\n      this.data.set(key, value);\n    } else {\n      this.data.delete(key);\n    }\n  }\n\n  /**\n   * Removes the key/value pair with the given key, if a key/value pair with the given key exists.\n   * @param key The storage key.\n   */\n  removeItem(key: string): void {\n    this.data.delete(key);\n  }\n\n  /**\n   * Returns the name of the nth key, or null if n is greater than or equal to the number of key/value pairs.\n   * @param index The numeric index.\n   * @returns The nth key.\n   */\n  key(index: number): string | null {\n    return Array.from(this.data.keys())[index];\n  }\n}\n"],"names":[],"mappings":";;AAEA;;;;;;AAMG;MACU,aAAa,CAAA;AAGxB,IAAA,WAAA,GAAA;AACE,QAAA,IAAI,CAAC,OAAO,GAAG,OAAO,YAAY,KAAK,WAAW,GAAG,YAAY,GAAG,IAAI,aAAa,EAAE,CAAC;KACzF;IAED,KAAK,GAAA;AACH,QAAA,IAAI,CAAC,OAAO,CAAC,KAAK,EAAE,CAAC;KACtB;AAED,IAAA,SAAS,CAAC,GAAW,EAAA;QACnB,OAAO,IAAI,CAAC,OAAO,CAAC,OAAO,CAAC,GAAG,CAAC,IAAI,SAAS,CAAC;KAC/C;IAED,SAAS,CAAC,GAAW,EAAE,KAAyB,EAAA;AAC9C,QAAA,IAAI,KAAK,EAAE;YACT,IAAI,CAAC,OAAO,CAAC,OAAO,CAAC,GAAG,EAAE,KAAK,CAAC,CAAC;AAClC,SAAA;AAAM,aAAA;AACL,YAAA,IAAI,CAAC,OAAO,CAAC,UAAU,CAAC,GAAG,CAAC,CAAC;AAC9B,SAAA;KACF;AAED,IAAA,SAAS,CAAI,GAAW,EAAA;QACtB,MAAM,GAAG,GAAG,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC;AAChC,QAAA,OAAO,GAAG,GAAI,IAAI,CAAC,KAAK,CAAC,GAAG,CAAO,GAAG,SAAS,CAAC;KACjD;IAED,SAAS,CAAI,GAAW,EAAE,KAAQ,EAAA;AAChC,QAAA,IAAI,CAAC,SAAS,CAAC,GAAG,EAAE,KAAK,GAAG,SAAS,CAAC,KAAK,CAAC,GAAG,SAAS,CAAC,CAAC;KAC3D;AACF,CAAA;AAED;;AAEG;MACU,aAAa,CAAA;AAGxB,IAAA,WAAA,GAAA;AACE,QAAA,IAAI,CAAC,IAAI,GAAG,IAAI,GAAG,EAAkB,CAAC;KACvC;AAED;;;AAGG;AACH,IAAA,IAAI,MAAM,GAAA;AACR,QAAA,OAAO,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC;KACvB;AAED;;AAEG;IACH,KAAK,GAAA;AACH,QAAA,IAAI,CAAC,IAAI,CAAC,KAAK,EAAE,CAAC;KACnB;AAED;;;;AAIG;AACH,IAAA,OAAO,CAAC,GAAW,EAAA;QACjB,OAAO,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,IAAI,IAAI,CAAC;KACnC;AAED;;;;AAIG;IACH,OAAO,CAAC,GAAW,EAAE,KAAoB,EAAA;AACvC,QAAA,IAAI,KAAK,EAAE;YACT,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,KAAK,CAAC,CAAC;AAC3B,SAAA;AAAM,aAAA;AACL,YAAA,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;AACvB,SAAA;KACF;AAED;;;AAGG;AACH,IAAA,UAAU,CAAC,GAAW,EAAA;AACpB,QAAA,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;KACvB;AAED;;;;AAIG;AACH,IAAA,GAAG,CAAC,KAAa,EAAA;AACf,QAAA,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC;KAC5C;AACF;;;;"}

package/dist/esm/types.mjs

@@ -131,6 +131,7 @@ function indexType(structureDefinition, elementDefinition) {
 }
 /**
  * Indexes PropertySchema from an ElementDefinition.
+ * @param structureDefinition The input StructureDefinition.
  * @param element The input ElementDefinition.
  * @see {@link IndexedStructureDefinition} for more details on indexed StructureDefinitions.
  */