@medplum/core 2.0.20 → 2.0.21

package/dist/esm/search/search.mjs

@@ -146,7 +146,7 @@ function parseKeyValue(searchRequest, key, value) {
             searchRequest.total = value;
             break;
         case '_summary':
-            searchRequest.total = 'estimate';
+            searchRequest.total = 'accurate';
             searchRequest.count = 0;
             break;
         case '_include': {

package/dist/esm/search/search.mjs.map

@@ -1 +1 @@
-{"version":3,"file":"search.mjs","sources":["../../../src/search/search.ts"],"sourcesContent":["import { Resource, ResourceType, SearchParameter } from '@medplum/fhirtypes';\nimport { globalSchema } from '../types';\nimport { OperationOutcomeError, badRequest } from '../outcomes';\n\nexport const DEFAULT_SEARCH_COUNT = 20;\n\nexport interface SearchRequest<T extends Resource = Resource> {\n  readonly resourceType: T['resourceType'];\n  filters?: Filter[];\n  sortRules?: SortRule[];\n  offset?: number;\n  count?: number;\n  fields?: string[];\n  name?: string;\n  total?: 'none' | 'estimate' | 'accurate';\n  include?: IncludeTarget[];\n  revInclude?: IncludeTarget[];\n}\n\nexport interface Filter {\n  code: string;\n  operator: Operator;\n  value: string;\n  unitSystem?: string;\n  unitCode?: string;\n}\n\nexport interface SortRule {\n  code: string;\n  descending?: boolean;\n}\n\nexport interface IncludeTarget {\n  resourceType: string;\n  searchParam: string;\n  targetType?: string;\n  modifier?: string;\n}\n\n/**\n * Search operators.\n * These operators represent \"modifiers\" and \"prefixes\" in FHIR search.\n * See: https://www.hl7.org/fhir/search.html\n */\nexport enum Operator {\n  EQUALS = 'eq',\n  NOT_EQUALS = 'ne',\n\n  // Numbers\n  GREATER_THAN = 'gt',\n  LESS_THAN = 'lt',\n  GREATER_THAN_OR_EQUALS = 'ge',\n  LESS_THAN_OR_EQUALS = 'le',\n\n  // Dates\n  STARTS_AFTER = 'sa',\n  ENDS_BEFORE = 'eb',\n  APPROXIMATELY = 'ap',\n\n  // String\n  CONTAINS = 'contains',\n  EXACT = 'exact',\n\n  // Token\n  TEXT = 'text',\n  NOT = 'not',\n  ABOVE = 'above',\n  BELOW = 'below',\n  IN = 'in',\n  NOT_IN = 'not-in',\n  OF_TYPE = 'of-type',\n\n  // All\n  MISSING = 'missing',\n\n  // Reference\n  IDENTIFIER = 'identifier',\n\n  // _include and _revinclude\n  ITERATE = 'iterate',\n}\n\n/**\n * Parameter names may specify a modifier as a suffix.\n * The modifiers are separated from the parameter name by a colon.\n * See: https://www.hl7.org/fhir/search.html#modifiers\n */\nconst MODIFIER_OPERATORS: Record<string, Operator> = {\n  contains: Operator.CONTAINS,\n  exact: Operator.EXACT,\n  above: Operator.ABOVE,\n  below: Operator.BELOW,\n  text: Operator.TEXT,\n  not: Operator.NOT,\n  in: Operator.IN,\n  'not-in': Operator.NOT_IN,\n  'of-type': Operator.OF_TYPE,\n  missing: Operator.MISSING,\n  identifier: Operator.IDENTIFIER,\n  iterate: Operator.ITERATE,\n};\n\n/**\n * For the ordered parameter types of number, date, and quantity,\n * a prefix to the parameter value may be used to control the nature\n * of the matching.\n * See: https://www.hl7.org/fhir/search.html#prefix\n */\nconst PREFIX_OPERATORS: Record<string, Operator> = {\n  eq: Operator.EQUALS,\n  ne: Operator.NOT_EQUALS,\n  lt: Operator.LESS_THAN,\n  le: Operator.LESS_THAN_OR_EQUALS,\n  gt: Operator.GREATER_THAN,\n  ge: Operator.GREATER_THAN_OR_EQUALS,\n  sa: Operator.STARTS_AFTER,\n  eb: Operator.ENDS_BEFORE,\n  ap: Operator.APPROXIMATELY,\n};\n\n/**\n * Parses a search URL into a search request.\n * @param resourceType The FHIR resource type.\n * @param query The collection of query string parameters.\n * @returns A parsed SearchRequest.\n */\nexport function parseSearchRequest<T extends Resource = Resource>(\n  resourceType: T['resourceType'],\n  query: Record<string, string[] | string | undefined>\n): SearchRequest<T> {\n  const queryArray: [string, string][] = [];\n  for (const [key, value] of Object.entries(query)) {\n    if (Array.isArray(value)) {\n      for (let i = 0; i < value.length; i++) {\n        queryArray.push([key, value[i]]);\n      }\n    } else {\n      queryArray.push([key, value || '']);\n    }\n  }\n  return parseSearchImpl(resourceType, queryArray);\n}\n\n/**\n * Parses a search URL into a search request.\n * @param url The search URL.\n * @returns A parsed SearchRequest.\n */\nexport function parseSearchUrl<T extends Resource = Resource>(url: URL): SearchRequest<T> {\n  const resourceType = url.pathname.split('/').filter(Boolean).pop() as ResourceType;\n  return parseSearchImpl<T>(resourceType, url.searchParams.entries());\n}\n\n/**\n * Parses a URL string into a SearchRequest.\n * @param url The URL to parse.\n * @returns Parsed search definition.\n */\nexport function parseSearchDefinition<T extends Resource = Resource>(url: string): SearchRequest<T> {\n  return parseSearchUrl<T>(new URL(url, 'https://example.com/'));\n}\n\nfunction parseSearchImpl<T extends Resource = Resource>(\n  resourceType: T['resourceType'],\n  query: [string, string][] | IterableIterator<[string, string]>\n): SearchRequest<T> {\n  const searchRequest: SearchRequest<T> = {\n    resourceType,\n  };\n\n  for (const [key, value] of query) {\n    parseKeyValue(searchRequest, key, value);\n  }\n\n  return searchRequest;\n}\n\nfunction parseKeyValue(searchRequest: SearchRequest, key: string, value: string): void {\n  let code;\n  let modifier;\n\n  const colonIndex = key.indexOf(':');\n  if (colonIndex >= 0) {\n    code = key.substring(0, colonIndex);\n    modifier = key.substring(colonIndex + 1);\n  } else {\n    code = key;\n    modifier = '';\n  }\n\n  switch (code) {\n    case '_sort':\n      parseSortRule(searchRequest, value);\n      break;\n\n    case '_count':\n      searchRequest.count = parseInt(value);\n      break;\n\n    case '_offset':\n      searchRequest.offset = parseInt(value);\n      break;\n\n    case '_total':\n      searchRequest.total = value as 'none' | 'estimate' | 'accurate';\n      break;\n\n    case '_summary':\n      searchRequest.total = 'estimate';\n      searchRequest.count = 0;\n      break;\n\n    case '_include': {\n      const target = parseIncludeTarget(value);\n      if (modifier === 'iterate') {\n        target.modifier = Operator.ITERATE;\n      }\n      if (searchRequest.include) {\n        searchRequest.include.push(target);\n      } else {\n        searchRequest.include = [target];\n      }\n      break;\n    }\n\n    case '_revinclude': {\n      const target = parseIncludeTarget(value);\n      if (modifier === 'iterate') {\n        target.modifier = Operator.ITERATE;\n      }\n      if (searchRequest.revInclude) {\n        searchRequest.revInclude.push(target);\n      } else {\n        searchRequest.revInclude = [target];\n      }\n      break;\n    }\n\n    case '_fields':\n      searchRequest.fields = value.split(',');\n      break;\n\n    default: {\n      const param = globalSchema.types[searchRequest.resourceType]?.searchParams?.[code];\n      if (param) {\n        parseParameter(searchRequest, param, modifier, value);\n      } else {\n        parseUnknownParameter(searchRequest, code, modifier, value);\n      }\n    }\n  }\n}\n\nfunction parseSortRule(searchRequest: SearchRequest, value: string): void {\n  for (const field of value.split(',')) {\n    let code;\n    let descending = false;\n    if (field.startsWith('-')) {\n      code = field.substring(1);\n      descending = true;\n    } else {\n      code = field;\n    }\n    if (!searchRequest.sortRules) {\n      searchRequest.sortRules = [];\n    }\n    searchRequest.sortRules.push({ code, descending });\n  }\n}\n\nfunction parseParameter(\n  searchRequest: SearchRequest,\n  searchParam: SearchParameter,\n  modifier: string,\n  value: string\n): void {\n  if (modifier === 'missing') {\n    addFilter(searchRequest, {\n      code: searchParam.code as string,\n      operator: Operator.MISSING,\n      value,\n    });\n    return;\n  }\n  switch (searchParam.type) {\n    case 'number':\n    case 'date':\n      parsePrefixType(searchRequest, searchParam, value);\n      break;\n    case 'reference':\n    case 'string':\n    case 'token':\n    case 'uri':\n      parseModifierType(searchRequest, searchParam, modifier, value);\n      break;\n    case 'quantity':\n      parseQuantity(searchRequest, searchParam, value);\n      break;\n  }\n}\n\nfunction parsePrefixType(searchRequest: SearchRequest, param: SearchParameter, input: string): void {\n  const { operator, value } = parsePrefix(input);\n  addFilter(searchRequest, {\n    code: param.code as string,\n    operator,\n    value,\n  });\n}\n\nfunction parseModifierType(\n  searchRequest: SearchRequest,\n  param: SearchParameter,\n  modifier: string,\n  value: string\n): void {\n  addFilter(searchRequest, {\n    code: param.code as string,\n    operator: parseModifier(modifier),\n    value,\n  });\n}\n\nfunction parseQuantity(searchRequest: SearchRequest, param: SearchParameter, input: string): void {\n  const [prefixNumber, unitSystem, unitCode] = input.split('|');\n  const { operator, value } = parsePrefix(prefixNumber);\n  addFilter(searchRequest, {\n    code: param.code as string,\n    operator,\n    value,\n    unitSystem,\n    unitCode,\n  });\n}\n\nfunction parseUnknownParameter(searchRequest: SearchRequest, code: string, modifier: string, value: string): void {\n  let operator = Operator.EQUALS;\n  if (modifier) {\n    operator = modifier as Operator;\n  } else if (value.length >= 2) {\n    const prefix = value.substring(0, 2);\n    if (prefix in PREFIX_OPERATORS) {\n      if (value.length === 2 || value.at(2)?.match(/\\d/)) {\n        operator = prefix as Operator;\n        value = value.substring(prefix.length);\n      }\n    }\n  }\n\n  addFilter(searchRequest, {\n    code,\n    operator,\n    value,\n  });\n}\n\nfunction parsePrefix(input: string): { operator: Operator; value: string } {\n  const prefix = input.substring(0, 2);\n  const prefixOperator = PREFIX_OPERATORS[prefix];\n  if (prefixOperator) {\n    return { operator: prefixOperator, value: input.substring(2) };\n  }\n  return { operator: Operator.EQUALS, value: input };\n}\n\nfunction parseModifier(modifier: string): Operator {\n  return MODIFIER_OPERATORS[modifier] || Operator.EQUALS;\n}\n\nfunction parseIncludeTarget(input: string): IncludeTarget {\n  const parts = input.split(':');\n\n  parts.forEach((p) => {\n    if (p === '*') {\n      throw new OperationOutcomeError(badRequest(`'*' is not supported as a value for search inclusion parameters`));\n    }\n  });\n\n  if (parts.length === 1) {\n    // Full wildcard, not currently supported\n    throw new OperationOutcomeError(\n      badRequest(`Invalid include value '${input}': must be of the form ResourceType:search-parameter`)\n    );\n  } else if (parts.length === 2) {\n    return {\n      resourceType: parts[0],\n      searchParam: parts[1],\n    };\n  } else if (parts.length === 3) {\n    return {\n      resourceType: parts[0],\n      searchParam: parts[1],\n      targetType: parts[2],\n    };\n  } else {\n    throw new OperationOutcomeError(badRequest(`Invalid include value '${input}'`));\n  }\n}\n\nfunction addFilter(searchRequest: SearchRequest, filter: Filter): void {\n  if (searchRequest.filters) {\n    searchRequest.filters.push(filter);\n  } else {\n    searchRequest.filters = [filter];\n  }\n}\n\n/**\n * Formats a search definition object into a query string.\n * Note: The return value does not include the 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+{"version":3,"file":"search.mjs","sources":["../../../src/search/search.ts"],"sourcesContent":["import { Resource, ResourceType, SearchParameter } from '@medplum/fhirtypes';\nimport { globalSchema } from '../types';\nimport { OperationOutcomeError, badRequest } from '../outcomes';\n\nexport const DEFAULT_SEARCH_COUNT = 20;\n\nexport interface SearchRequest<T extends Resource = Resource> {\n  readonly resourceType: T['resourceType'];\n  filters?: Filter[];\n  sortRules?: SortRule[];\n  offset?: number;\n  count?: number;\n  fields?: string[];\n  name?: string;\n  total?: 'none' | 'estimate' | 'accurate';\n  include?: IncludeTarget[];\n  revInclude?: IncludeTarget[];\n}\n\nexport interface Filter {\n  code: string;\n  operator: Operator;\n  value: string;\n  unitSystem?: string;\n  unitCode?: string;\n}\n\nexport interface SortRule {\n  code: string;\n  descending?: boolean;\n}\n\nexport interface IncludeTarget {\n  resourceType: string;\n  searchParam: string;\n  targetType?: string;\n  modifier?: string;\n}\n\n/**\n * Search operators.\n * These operators represent \"modifiers\" and \"prefixes\" in FHIR search.\n * See: https://www.hl7.org/fhir/search.html\n */\nexport enum Operator {\n  EQUALS = 'eq',\n  NOT_EQUALS = 'ne',\n\n  // Numbers\n  GREATER_THAN = 'gt',\n  LESS_THAN = 'lt',\n  GREATER_THAN_OR_EQUALS = 'ge',\n  LESS_THAN_OR_EQUALS = 'le',\n\n  // Dates\n  STARTS_AFTER = 'sa',\n  ENDS_BEFORE = 'eb',\n  APPROXIMATELY = 'ap',\n\n  // String\n  CONTAINS = 'contains',\n  EXACT = 'exact',\n\n  // Token\n  TEXT = 'text',\n  NOT = 'not',\n  ABOVE = 'above',\n  BELOW = 'below',\n  IN = 'in',\n  NOT_IN = 'not-in',\n  OF_TYPE = 'of-type',\n\n  // All\n  MISSING = 'missing',\n\n  // Reference\n  IDENTIFIER = 'identifier',\n\n  // _include and _revinclude\n  ITERATE = 'iterate',\n}\n\n/**\n * Parameter names may specify a modifier as a suffix.\n * The modifiers are separated from the parameter name by a colon.\n * See: https://www.hl7.org/fhir/search.html#modifiers\n */\nconst MODIFIER_OPERATORS: Record<string, Operator> = {\n  contains: Operator.CONTAINS,\n  exact: Operator.EXACT,\n  above: Operator.ABOVE,\n  below: Operator.BELOW,\n  text: Operator.TEXT,\n  not: Operator.NOT,\n  in: Operator.IN,\n  'not-in': Operator.NOT_IN,\n  'of-type': Operator.OF_TYPE,\n  missing: Operator.MISSING,\n  identifier: Operator.IDENTIFIER,\n  iterate: Operator.ITERATE,\n};\n\n/**\n * For the ordered parameter types of number, date, and quantity,\n * a prefix to the parameter value may be used to control the nature\n * of the matching.\n * See: https://www.hl7.org/fhir/search.html#prefix\n */\nconst PREFIX_OPERATORS: Record<string, Operator> = {\n  eq: Operator.EQUALS,\n  ne: Operator.NOT_EQUALS,\n  lt: Operator.LESS_THAN,\n  le: Operator.LESS_THAN_OR_EQUALS,\n  gt: Operator.GREATER_THAN,\n  ge: Operator.GREATER_THAN_OR_EQUALS,\n  sa: Operator.STARTS_AFTER,\n  eb: Operator.ENDS_BEFORE,\n  ap: Operator.APPROXIMATELY,\n};\n\n/**\n * Parses a search URL into a search request.\n * @param resourceType The FHIR resource type.\n * @param query The collection of query string parameters.\n * @returns A parsed SearchRequest.\n */\nexport function parseSearchRequest<T extends Resource = Resource>(\n  resourceType: T['resourceType'],\n  query: Record<string, string[] | string | undefined>\n): SearchRequest<T> {\n  const queryArray: [string, string][] = [];\n  for (const [key, value] of Object.entries(query)) {\n    if (Array.isArray(value)) {\n      for (let i = 0; i < value.length; i++) {\n        queryArray.push([key, value[i]]);\n      }\n    } else {\n      queryArray.push([key, value || '']);\n    }\n  }\n  return parseSearchImpl(resourceType, queryArray);\n}\n\n/**\n * Parses a search URL into a search request.\n * @param url The search URL.\n * @returns A parsed SearchRequest.\n */\nexport function parseSearchUrl<T extends Resource = Resource>(url: URL): SearchRequest<T> {\n  const resourceType = url.pathname.split('/').filter(Boolean).pop() as ResourceType;\n  return parseSearchImpl<T>(resourceType, url.searchParams.entries());\n}\n\n/**\n * Parses a URL string into a SearchRequest.\n * @param url The URL to parse.\n * @returns Parsed search definition.\n */\nexport function parseSearchDefinition<T extends Resource = Resource>(url: string): SearchRequest<T> {\n  return parseSearchUrl<T>(new URL(url, 'https://example.com/'));\n}\n\nfunction parseSearchImpl<T extends Resource = Resource>(\n  resourceType: T['resourceType'],\n  query: [string, string][] | IterableIterator<[string, string]>\n): SearchRequest<T> {\n  const searchRequest: SearchRequest<T> = {\n    resourceType,\n  };\n\n  for (const [key, value] of query) {\n    parseKeyValue(searchRequest, key, value);\n  }\n\n  return searchRequest;\n}\n\nfunction parseKeyValue(searchRequest: SearchRequest, key: string, value: string): void {\n  let code;\n  let modifier;\n\n  const colonIndex = key.indexOf(':');\n  if (colonIndex >= 0) {\n    code = key.substring(0, colonIndex);\n    modifier = key.substring(colonIndex + 1);\n  } else {\n    code = key;\n    modifier = '';\n  }\n\n  switch (code) {\n    case '_sort':\n      parseSortRule(searchRequest, value);\n      break;\n\n    case '_count':\n      searchRequest.count = parseInt(value);\n      break;\n\n    case '_offset':\n      searchRequest.offset = parseInt(value);\n      break;\n\n    case '_total':\n      searchRequest.total = value as 'none' | 'estimate' | 'accurate';\n      break;\n\n    case '_summary':\n      searchRequest.total = 'accurate';\n      searchRequest.count = 0;\n      break;\n\n    case '_include': {\n      const target = parseIncludeTarget(value);\n      if (modifier === 'iterate') {\n        target.modifier = Operator.ITERATE;\n      }\n      if (searchRequest.include) {\n        searchRequest.include.push(target);\n      } else {\n        searchRequest.include = [target];\n      }\n      break;\n    }\n\n    case '_revinclude': {\n      const target = parseIncludeTarget(value);\n      if (modifier === 'iterate') {\n        target.modifier = Operator.ITERATE;\n      }\n      if (searchRequest.revInclude) {\n        searchRequest.revInclude.push(target);\n      } else {\n        searchRequest.revInclude = [target];\n      }\n      break;\n    }\n\n    case '_fields':\n      searchRequest.fields = value.split(',');\n      break;\n\n    default: {\n      const param = globalSchema.types[searchRequest.resourceType]?.searchParams?.[code];\n      if (param) {\n        parseParameter(searchRequest, param, modifier, value);\n      } else {\n        parseUnknownParameter(searchRequest, code, modifier, value);\n      }\n    }\n  }\n}\n\nfunction parseSortRule(searchRequest: SearchRequest, value: string): void {\n  for (const field of value.split(',')) {\n    let code;\n    let descending = false;\n    if (field.startsWith('-')) {\n      code = field.substring(1);\n      descending = true;\n    } else {\n      code = field;\n    }\n    if (!searchRequest.sortRules) {\n      searchRequest.sortRules = [];\n    }\n    searchRequest.sortRules.push({ code, descending });\n  }\n}\n\nfunction parseParameter(\n  searchRequest: SearchRequest,\n  searchParam: SearchParameter,\n  modifier: string,\n  value: string\n): void {\n  if (modifier === 'missing') {\n    addFilter(searchRequest, {\n      code: searchParam.code as string,\n      operator: Operator.MISSING,\n      value,\n    });\n    return;\n  }\n  switch (searchParam.type) {\n    case 'number':\n    case 'date':\n      parsePrefixType(searchRequest, searchParam, value);\n      break;\n    case 'reference':\n    case 'string':\n    case 'token':\n    case 'uri':\n      parseModifierType(searchRequest, searchParam, modifier, value);\n      break;\n    case 'quantity':\n      parseQuantity(searchRequest, searchParam, value);\n      break;\n  }\n}\n\nfunction parsePrefixType(searchRequest: SearchRequest, param: SearchParameter, input: string): void {\n  const { operator, value } = parsePrefix(input);\n  addFilter(searchRequest, {\n    code: param.code as string,\n    operator,\n    value,\n  });\n}\n\nfunction parseModifierType(\n  searchRequest: SearchRequest,\n  param: SearchParameter,\n  modifier: string,\n  value: string\n): void {\n  addFilter(searchRequest, {\n    code: param.code as string,\n    operator: parseModifier(modifier),\n    value,\n  });\n}\n\nfunction parseQuantity(searchRequest: SearchRequest, param: SearchParameter, input: string): void {\n  const [prefixNumber, unitSystem, unitCode] = input.split('|');\n  const { operator, value } = parsePrefix(prefixNumber);\n  addFilter(searchRequest, {\n    code: param.code as string,\n    operator,\n    value,\n    unitSystem,\n    unitCode,\n  });\n}\n\nfunction parseUnknownParameter(searchRequest: SearchRequest, code: string, modifier: string, value: string): void {\n  let operator = Operator.EQUALS;\n  if (modifier) {\n    operator = modifier as Operator;\n  } else if (value.length >= 2) 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supported as a value for search inclusion parameters`));\n    }\n  });\n\n  if (parts.length === 1) {\n    // Full wildcard, not currently supported\n    throw new OperationOutcomeError(\n      badRequest(`Invalid include value '${input}': must be of the form ResourceType:search-parameter`)\n    );\n  } else if (parts.length === 2) {\n    return {\n      resourceType: parts[0],\n      searchParam: parts[1],\n    };\n  } else if (parts.length === 3) {\n    return {\n      resourceType: parts[0],\n      searchParam: parts[1],\n      targetType: parts[2],\n    };\n  } else {\n    throw new OperationOutcomeError(badRequest(`Invalid include value '${input}'`));\n  }\n}\n\nfunction addFilter(searchRequest: SearchRequest, filter: Filter): void {\n  if (searchRequest.filters) {\n    searchRequest.filters.push(filter);\n  } else {\n    searchRequest.filters = [filter];\n  }\n}\n\n/**\n * Formats a search definition object into a query string.\n * Note: The return value does not include the 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package/dist/esm/sftp.mjs

@@ -8,7 +8,6 @@ function streamToBuffer(stream) {
     return new Promise((resolve, reject) => {
         stream.on('data', (chunk) => chunks.push(Buffer.from(chunk)));
         stream.on('error', (err) => {
-            console.error(err.message);
             stream.destroy();
             reject(err);
         });

package/dist/esm/sftp.mjs.map

@@ -1 +1 @@
-{"version":3,"file":"sftp.mjs","sources":["../../src/sftp.ts"],"sourcesContent":["import { Readable } from 'stream';\n\n/**\n * Reads data from a Readable stream and returns a Promise that resolves with a Buffer containing all the data.\n * @param stream - The Readable stream to read from.\n * @returns A Promise that resolves with a Buffer containing all the data from the Readable stream.\n */\nexport function streamToBuffer(stream: Readable): Promise<Buffer> {\n  const chunks: Uint8Array[] = [];\n  return new Promise<Buffer>((resolve, reject) => {\n    stream.on('data', (chunk: Uint8Array) => chunks.push(Buffer.from(chunk)));\n    stream.on('error', (err: Error) => {\n      console.error(err.message);\n      stream.destroy();\n      reject(err);\n    });\n    stream.on('end', () => {\n      resolve(Buffer.concat(chunks));\n    });\n    stream.on('close', () => {\n      stream.destroy();\n    });\n  });\n}\n"],"names":[],"mappings":"AAEA;;;;AAIG;AACG,SAAU,cAAc,CAAC,MAAgB,EAAA;IAC7C,MAAM,MAAM,GAAiB,EAAE,CAAC;IAChC,OAAO,IAAI,OAAO,CAAS,CAAC,OAAO,EAAE,MAAM,KAAI;QAC7C,MAAM,CAAC,EAAE,CAAC,MAAM,EAAE,CAAC,KAAiB,KAAK,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QAC1E,MAAM,CAAC,EAAE,CAAC,OAAO,EAAE,CAAC,GAAU,KAAI;AAChC,YAAA,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;YAC3B,MAAM,CAAC,OAAO,EAAE,CAAC;YACjB,MAAM,CAAC,GAAG,CAAC,CAAC;AACd,SAAC,CAAC,CAAC;AACH,QAAA,MAAM,CAAC,EAAE,CAAC,KAAK,EAAE,MAAK;YACpB,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC;AACjC,SAAC,CAAC,CAAC;AACH,QAAA,MAAM,CAAC,EAAE,CAAC,OAAO,EAAE,MAAK;YACtB,MAAM,CAAC,OAAO,EAAE,CAAC;AACnB,SAAC,CAAC,CAAC;AACL,KAAC,CAAC,CAAC;AACL;;;;"}
+{"version":3,"file":"sftp.mjs","sources":["../../src/sftp.ts"],"sourcesContent":["import { Readable } from 'stream';\n\n/**\n * Reads data from a Readable stream and returns a Promise that resolves with a Buffer containing all the data.\n * @param stream - The Readable stream to read from.\n * @returns A Promise that resolves with a Buffer containing all the data from the Readable stream.\n */\nexport function streamToBuffer(stream: Readable): Promise<Buffer> {\n  const chunks: Uint8Array[] = [];\n  return new Promise<Buffer>((resolve, reject) => {\n    stream.on('data', (chunk: Uint8Array) => chunks.push(Buffer.from(chunk)));\n    stream.on('error', (err: Error) => {\n      stream.destroy();\n      reject(err);\n    });\n    stream.on('end', () => {\n      resolve(Buffer.concat(chunks));\n    });\n    stream.on('close', () => {\n      stream.destroy();\n    });\n  });\n}\n"],"names":[],"mappings":"AAEA;;;;AAIG;AACG,SAAU,cAAc,CAAC,MAAgB,EAAA;IAC7C,MAAM,MAAM,GAAiB,EAAE,CAAC;IAChC,OAAO,IAAI,OAAO,CAAS,CAAC,OAAO,EAAE,MAAM,KAAI;QAC7C,MAAM,CAAC,EAAE,CAAC,MAAM,EAAE,CAAC,KAAiB,KAAK,MAAM,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QAC1E,MAAM,CAAC,EAAE,CAAC,OAAO,EAAE,CAAC,GAAU,KAAI;YAChC,MAAM,CAAC,OAAO,EAAE,CAAC;YACjB,MAAM,CAAC,GAAG,CAAC,CAAC;AACd,SAAC,CAAC,CAAC;AACH,QAAA,MAAM,CAAC,EAAE,CAAC,KAAK,EAAE,MAAK;YACpB,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC;AACjC,SAAC,CAAC,CAAC;AACH,QAAA,MAAM,CAAC,EAAE,CAAC,OAAO,EAAE,MAAK;YACtB,MAAM,CAAC,OAAO,EAAE,CAAC;AACnB,SAAC,CAAC,CAAC;AACL,KAAC,CAAC,CAAC;AACL;;;;"}

package/dist/types/client.d.ts

@@ -1,4 +1,4 @@
-import { AccessPolicy, Binary, Bundle, Communication, ExtractResource, Identifier, Media, OperationOutcome, Project, ProjectMembership, ProjectSecret, Reference, Resource, ResourceType, UserConfiguration, ValueSet } from '@medplum/fhirtypes';
+import { AccessPolicy, Binary, BulkDataExport, Bundle, Communication, ExtractResource, Identifier, Media, OperationOutcome, Project, ProjectMembership, ProjectSecret, Reference, Resource, ResourceType, UserConfiguration, ValueSet } from '@medplum/fhirtypes';
 /** @ts-ignore */
 import type { CustomTableLayout, TDocumentDefinitions, TFontDictionary } from 'pdfmake/interfaces';
 import { EventTarget } from './eventtarget';
@@ -1181,9 +1181,10 @@ export declare class MedplumClient extends EventTarget {
      * See The FHIR "batch/transaction" section for full details: https://hl7.org/fhir/http.html#transaction
      * @category Batch
      * @param bundle The FHIR batch/transaction bundle.
+     * @param options Optional fetch options.
      * @returns The FHIR batch/transaction response bundle.
      */
-    executeBatch(bundle: Bundle): Promise<Bundle>;
+    executeBatch(bundle: Bundle, options?: RequestInit): Promise<Bundle>;
     /**
      * Sends an email using the Medplum Email API.
      *
@@ -1341,6 +1342,16 @@ export declare class MedplumClient extends EventTarget {
      * @returns Promise that resolves to the created Media
      */
     uploadMedia(contents: string | Uint8Array | File | Blob, contentType: string, filename: string | undefined, additionalFields?: Partial<Media>): Promise<Media>;
+    /**
+     * Performs Bulk Data Export operation request flow. See The FHIR "Bulk Data Export" for full details: https://build.fhir.org/ig/HL7/bulk-data/export.html#bulk-data-export
+     *
+     * @param exportLevel Optional export level. Defaults to system level export. 'Group/:id' - Group of Patients, 'Patient' - All Patients.
+     * @param resourceTypes A string of comma-delimited FHIR resource types.
+     * @param since Resources will be included in the response if their state has changed after the supplied time (e.g. if Resource.meta.lastUpdated is later than the supplied _since time).
+     * @param options Optional fetch options.
+     * @returns Bulk Data Response containing links to Bulk Data files. See "Response - Complete Status" for full details: https://build.fhir.org/ig/HL7/bulk-data/export.html#response---complete-status
+     */
+    bulkExport(exportLevel?: string, resourceTypes?: string, since?: string, options?: RequestInit): Promise<Partial<BulkDataExport>>;
     /**
      * Returns the cache entry if available and not expired.
      * @param key The cache key to retrieve.
@@ -1374,7 +1385,9 @@ export declare class MedplumClient extends EventTarget {
      * @param {Object=} body
      */
     private request;
+    private parseResponse;
     private fetchWithRetry;
+    private pollStatus;
     /**
      * Executes a batch of requests that were automatically batched together.
      */
@@ -1490,4 +1503,5 @@ export declare class MedplumClient extends EventTarget {
      * This synchronizes state across browser windows and browser tabs.
      */
     private setupStorageListener;
+    private retryCatch;
 }

package/dist/types/config.d.ts

@@ -12,21 +12,25 @@ export interface MedplumInfraConfig {
     appDomainName: string;
     appSslCertArn: string;
     appApiProxy?: boolean;
+    appLoggingBucket?: string;
+    appLoggingPrefix?: string;
     storageBucketName: string;
     storageDomainName: string;
     storageSslCertArn: string;
     storagePublicKey: string;
+    storageLoggingBucket?: string;
+    storageLoggingPrefix?: string;
     maxAzs: number;
     rdsInstances: number;
     rdsInstanceType: string;
     rdsSecretsArn?: string;
+    cacheNodeType?: string;
     desiredServerCount: number;
     serverImage: string;
     serverMemory: number;
     serverCpu: number;
-    loadBalancerLoggingEnabled: boolean;
-    loadBalancerLoggingBucket: string;
-    loadBalancerLoggingPrefix: string;
+    loadBalancerLoggingBucket?: string;
+    loadBalancerLoggingPrefix?: string;
     clamscanEnabled: boolean;
     clamscanLoggingBucket: string;
     clamscanLoggingPrefix: string;

package/dist/types/typeschema/types.d.ts

@@ -0,0 +1,56 @@
+import { ResourceType, StructureDefinition } from '@medplum/fhirtypes';
+import { TypedValue } from '../types';
+/**
+ * Internal representation of a non-primitive FHIR type, suitable for use in resource validation
+ */
+export interface InternalTypeSchema {
+    name: ResourceType;
+    fields: Record<string, ElementValidator>;
+    constraints: Constraint[];
+}
+export interface ElementValidator {
+    min: number;
+    max: number;
+    isArray: boolean;
+    constraints: Constraint[];
+    type: ElementType[];
+    slicing?: SlicingRules;
+    fixed?: TypedValue;
+    pattern?: TypedValue;
+    binding?: string;
+}
+export interface ElementType {
+    code: string;
+    targetProfile: string[];
+}
+export interface Constraint {
+    key: string;
+    severity: 'error' | 'warning';
+    expression: string;
+    description: string;
+}
+export interface SlicingRules {
+    discriminator: SliceDiscriminator[];
+    ordered: boolean;
+    rule?: 'open' | 'closed' | 'openAtEnd';
+    slices: SliceDefinition[];
+}
+export interface SliceDefinition {
+    name: string;
+    fields: Record<string, ElementValidator>;
+    min: number;
+    max: number;
+}
+export interface SliceDiscriminator {
+    path: string;
+    type: string;
+}
+/**
+ * Parses a StructureDefinition resource into an internal schema better suited for
+ * programmatic validation and usage in internal systems
+ *
+ * @param sd The StructureDefinition resource to parse
+ * @returns The parsed schema for the given resource type
+ * @experimental
+ */
+export declare function parseStructureDefinition(sd: StructureDefinition): InternalTypeSchema;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@medplum/core",
-  "version": "2.0.20",
+  "version": "2.0.21",
   "description": "Medplum TS/JS Library",
   "author": "Medplum <hello@medplum.com>",
   "license": "Apache-2.0",