@medplum/core 2.0.13 → 2.0.14

package/dist/esm/index.mjs

@@ -1,3 +1,4 @@
+export { convertToTransactionBundle } from './bundle.mjs';
 export { LRUCache } from './cache.mjs';
 export { MEDPLUM_VERSION, MedplumClient } from './client.mjs';
 export { InfixOperatorAtom, Parser, ParserBuilder, PrefixOperatorAtom } from './fhirlexer/parse.mjs';

package/dist/esm/index.mjs.map

@@ -1 +1 @@
-{"version":3,"file":"index.mjs","sources":[],"sourcesContent":[],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;"}
+{"version":3,"file":"index.mjs","sources":[],"sourcesContent":[],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;"}

package/dist/esm/schema.mjs

@@ -1,12 +1,11 @@
 import { __classPrivateFieldSet, __classPrivateFieldGet } from './node_modules/tslib/tslib.es6.mjs';
-import './fhirpath/atoms.mjs';
-import './fhirpath/parse.mjs';
 import './fhirlexer/parse.mjs';
 import './fhirlexer/tokenize.mjs';
-import { toTypedValue, getTypedPropertyValue } from './fhirpath/utils.mjs';
-import { OperationOutcomeError, validationError } from './outcomes.mjs';
 import { globalSchema, PropertyType } from './types.mjs';
 import { isEmpty, isLowerCase, getExtensionValue, capitalize } from './utils.mjs';
+import { toTypedValue, getTypedPropertyValue } from './fhirpath/utils.mjs';
+import './fhirpath/parse.mjs';
+import { OperationOutcomeError, validationError } from './outcomes.mjs';
 
 var _FhirSchemaValidator_instances, _FhirSchemaValidator_issues, _FhirSchemaValidator_root, _FhirSchemaValidator_validateObject, _FhirSchemaValidator_checkProperties, _FhirSchemaValidator_checkProperty, _FhirSchemaValidator_checkPropertyValue, _FhirSchemaValidator_validatePrimitiveType, _FhirSchemaValidator_validateString, _FhirSchemaValidator_validateNumber, _FhirSchemaValidator_checkAdditionalProperties, _FhirSchemaValidator_checkAdditionalProperty, _FhirSchemaValidator_checkPrimitiveElement, _FhirSchemaValidator_createIssue;
 /*

package/dist/esm/schema.mjs.map

@@ -1 +1 @@
-{"version":3,"file":"schema.mjs","sources":["../../src/schema.ts"],"sourcesContent":["import { ElementDefinition, OperationOutcomeIssue, Resource } from '@medplum/fhirtypes';\nimport { getTypedPropertyValue, toTypedValue } from './fhirpath';\nimport { OperationOutcomeError, validationError } from './outcomes';\nimport { globalSchema, PropertyType, TypedValue } from './types';\nimport { capitalize, getExtensionValue, isEmpty, isLowerCase } from './utils';\n\n/*\n * This file provides schema validation utilities for FHIR JSON objects.\n *\n * See: [JSON Representation of Resources](https://hl7.org/fhir/json.html)\n * See: [FHIR Data Types](https://www.hl7.org/fhir/datatypes.html)\n */\n\nconst fhirTypeToJsType: Record<string, string> = {\n  base64Binary: 'string',\n  boolean: 'boolean',\n  canonical: 'string',\n  code: 'string',\n  date: 'string',\n  dateTime: 'string',\n  decimal: 'number',\n  id: 'string',\n  instant: 'string',\n  integer: 'number',\n  markdown: 'string',\n  oid: 'string',\n  positiveInt: 'number',\n  string: 'string',\n  time: 'string',\n  unsignedInt: 'number',\n  uri: 'string',\n  url: 'string',\n  uuid: 'string',\n  xhtml: 'string',\n  'http://hl7.org/fhirpath/System.String': 'string',\n};\n\nconst baseResourceProperties = new Set<string>([\n  // Resource\n  'resourceType',\n  'id',\n  'meta',\n  'implicitRules',\n  'language',\n\n  // DomainResource\n  'text',\n  'contained',\n  'extension',\n  'modifierExtension',\n]);\n\n/**\n * Returns true if the given string is a valid FHIR resource type.\n *\n * ```ts\n * isResourceType('Patient'); // true\n * isResourceType('XYZ'); // false\n * ```\n *\n * Note that this depends on globalSchema, which is populated by the StructureDefinition loader.\n *\n * In a server context, you can load all schema definitions:\n *\n * ```ts\n * import { indexStructureDefinitionBundle } from '@medplum/core';\n * import { readJson } from '@medplum/definitions';\n * import { Bundle } from '@medplum/fhirtypes';\n *\n * indexStructureDefinitionBundle(readJson('fhir/r4/profiles-resources.json') as Bundle);\n * ```\n *\n * In a client context, you can load the schema definitions using MedplumClient:\n *\n * ```ts\n * import { MedplumClient } from '@medplum/core';\n *\n * const medplum = new MedplumClient();\n * await medplum.requestSchema('Patient');\n * ```\n *\n * @param resourceType The candidate resource type string.\n * @returns True if the resource type is a valid FHIR resource type.\n */\nexport function isResourceType(resourceType: string): boolean {\n  const typeSchema = globalSchema.types[resourceType];\n  return (\n    typeSchema &&\n    typeSchema.structureDefinition.id === resourceType &&\n    typeSchema.structureDefinition.kind === 'resource'\n  );\n}\n\n/**\n * Validates that the given string is a valid FHIR resource type.\n * On success, silently returns void.\n * On failure, throws an OperationOutcomeError.\n *\n * ```ts\n * validateResourceType('Patient'); // nothing\n * validateResourceType('XYZ'); // throws OperationOutcomeError\n * ```\n *\n * Note that this depends on globalSchema, which is populated by the StructureDefinition loader.\n *\n * In a server context, you can load all schema definitions:\n *\n * ```ts\n * import { indexStructureDefinitionBundle } from '@medplum/core';\n * import { readJson } from '@medplum/definitions';\n * import { Bundle } from '@medplum/fhirtypes';\n *\n * indexStructureDefinitionBundle(readJson('fhir/r4/profiles-resources.json') as Bundle);\n * ```\n *\n * In a client context, you can load the schema definitions using MedplumClient:\n *\n * ```ts\n * import { MedplumClient } from '@medplum/core';\n *\n * const medplum = new MedplumClient();\n * await medplum.requestSchema('Patient');\n * ```\n *\n * @param resourceType The candidate resource type string.\n * @returns True if the resource type is a valid FHIR resource type.\n */\nexport function validateResourceType(resourceType: string): void {\n  if (!resourceType) {\n    throw new OperationOutcomeError(validationError('Resource type is null'));\n  }\n  if (!isResourceType(resourceType)) {\n    throw new OperationOutcomeError(validationError('Unknown resource type'));\n  }\n}\n\n/**\n * Validates a candidate FHIR resource object.\n * On success, silently returns void.\n * On failure, throws an OperationOutcomeError with issues for each violation.\n *\n * ```ts\n * validateResource({ resourceType: 'Patient' }); // nothing\n * validateResource({ resourceType: 'XYZ' }); // throws OperationOutcomeError\n * ```\n *\n * Note that this depends on globalSchema, which is populated by the StructureDefinition loader.\n *\n * In a server context, you can load all schema definitions:\n *\n * ```ts\n * import { indexStructureDefinitionBundle } from '@medplum/core';\n * import { readJson } from '@medplum/definitions';\n * import { Bundle } from '@medplum/fhirtypes';\n *\n * indexStructureDefinitionBundle(readJson('fhir/r4/profiles-resources.json') as Bundle);\n * ```\n *\n * In a client context, you can load the schema definitions using MedplumClient:\n *\n * ```ts\n * import { MedplumClient } from '@medplum/core';\n *\n * const medplum = new MedplumClient();\n * await medplum.requestSchema('Patient');\n * ```\n *\n * @param resourceType The candidate resource type string.\n * @returns True if the resource type is a valid FHIR resource type.\n */\nexport function validateResource<T extends Resource>(resource: T): void {\n  new FhirSchemaValidator(resource).validate();\n}\n\nexport class FhirSchemaValidator<T extends Resource> {\n  readonly #issues: OperationOutcomeIssue[];\n  readonly #root: T;\n\n  constructor(root: T) {\n    this.#issues = [];\n    this.#root = root;\n  }\n\n  validate(): void {\n    const resource = this.#root;\n    if (!resource) {\n      throw new OperationOutcomeError(validationError('Resource is null'));\n    }\n\n    const resourceType = resource.resourceType;\n    if (!resourceType) {\n      throw new OperationOutcomeError(validationError('Missing resource type'));\n    }\n\n    // Check for \"null\" once for the entire object hierarchy\n    checkForNull(resource, '', this.#issues);\n\n    this.#validateObject(toTypedValue(resource), resourceType);\n\n    if (this.#issues.length > 0) {\n      throw new OperationOutcomeError({\n        resourceType: 'OperationOutcome',\n        issue: this.#issues,\n      });\n    }\n  }\n\n  #validateObject(typedValue: TypedValue, path: string): void {\n    const definition = globalSchema.types[typedValue.type];\n    if (!definition) {\n      throw new OperationOutcomeError(validationError('Unknown type: ' + typedValue.type));\n    }\n\n    const propertyDefinitions = definition.properties;\n    this.#checkProperties(path, propertyDefinitions, typedValue);\n    this.#checkAdditionalProperties(path, typedValue, propertyDefinitions);\n  }\n\n  #checkProperties(path: string, propertyDefinitions: Record<string, ElementDefinition>, typedValue: TypedValue): void {\n    for (const [key, elementDefinition] of Object.entries(propertyDefinitions)) {\n      this.#checkProperty(path + '.' + key, elementDefinition, typedValue);\n    }\n  }\n\n  #checkProperty(path: string, elementDefinition: ElementDefinition, typedValue: TypedValue): void {\n    const propertyName = path.split('.').pop() as string;\n    const value = getTypedPropertyValue(typedValue, propertyName);\n\n    if (isEmpty(value)) {\n      if (elementDefinition.min !== undefined && elementDefinition.min > 0) {\n        this.#issues.push(createStructureIssue(path, 'Missing required property'));\n      }\n      return;\n    }\n\n    if (elementDefinition.max === '*') {\n      if (!Array.isArray(value)) {\n        this.#issues.push(createStructureIssue(path, 'Expected array for property'));\n        return;\n      }\n      for (const item of value) {\n        this.#checkPropertyValue(path, elementDefinition, item);\n      }\n    } else {\n      if (Array.isArray(value)) {\n        this.#issues.push(createStructureIssue(path, 'Expected single value for property'));\n        return;\n      }\n      this.#checkPropertyValue(path, elementDefinition, value as TypedValue);\n    }\n  }\n\n  #checkPropertyValue(path: string, elementDefinition: ElementDefinition, typedValue: TypedValue): void {\n    if (typedValue.value === null) {\n      // Null handled separately\n      return;\n    }\n\n    if (isLowerCase(typedValue.type.charAt(0))) {\n      this.#validatePrimitiveType(elementDefinition, typedValue);\n    } else {\n      this.#validateObject(typedValue, path);\n    }\n  }\n\n  #validatePrimitiveType(elementDefinition: ElementDefinition, typedValue: TypedValue): void {\n    const { type, value } = typedValue;\n\n    if (value === null) {\n      // Null handled separately, so this code should never be reached\n      // Leaving this check in place for now, in case we change the null handling\n      return;\n    }\n\n    // First, make sure the value is the correct JS type\n    const expectedType = fhirTypeToJsType[typedValue.type];\n    if (typeof value !== expectedType) {\n      this.#createIssue(elementDefinition, 'Invalid type for ' + type);\n      return;\n    }\n\n    // Then, perform additional checks for specialty types\n    if (expectedType === 'string') {\n      this.#validateString(elementDefinition, type as PropertyType, value as string);\n    } else if (expectedType === 'number') {\n      this.#validateNumber(elementDefinition, type as PropertyType, value as number);\n    }\n  }\n\n  #validateString(elementDefinition: ElementDefinition, type: PropertyType, value: string): void {\n    if (!value.trim()) {\n      this.#createIssue(elementDefinition, 'Invalid empty string');\n      return;\n    }\n\n    // Try to get the regex\n    const valueDefinition = globalSchema.types[type]?.properties?.['value'];\n    if (valueDefinition?.type) {\n      const regex = getExtensionValue(valueDefinition.type[0], 'http://hl7.org/fhir/StructureDefinition/regex');\n      if (regex) {\n        if (!value.match(new RegExp(regex))) {\n          this.#createIssue(elementDefinition, 'Invalid ' + type + ' format');\n        }\n      }\n    }\n  }\n\n  #validateNumber(elementDefinition: ElementDefinition, type: PropertyType, value: number): void {\n    if (isNaN(value) || !isFinite(value)) {\n      this.#createIssue(elementDefinition, 'Invalid ' + type + ' value');\n      return;\n    }\n\n    if (isIntegerType(type) && !Number.isInteger(value)) {\n      this.#createIssue(elementDefinition, 'Number is not an integer');\n    }\n\n    if (type === PropertyType.positiveInt && value <= 0) {\n      this.#createIssue(elementDefinition, 'Number is less than or equal to zero');\n    }\n\n    if (type === PropertyType.unsignedInt && value < 0) {\n      this.#createIssue(elementDefinition, 'Number is negative');\n    }\n  }\n\n  #checkAdditionalProperties(\n    path: string,\n    typedValue: TypedValue,\n    propertyDefinitions: Record<string, ElementDefinition>\n  ): void {\n    const object = typedValue.value as Record<string, unknown>;\n    for (const key of Object.keys(object)) {\n      this.#checkAdditionalProperty(path, key, typedValue, propertyDefinitions);\n    }\n  }\n\n  /**\n   * Checks if the given property is allowed on the given object.\n   * @param path The path of the current object.\n   * @param key The key of a property to check.\n   * @param typedValue The current object.\n   * @param propertyDefinitions The property definitions of the current object.\n   */\n  #checkAdditionalProperty(\n    path: string,\n    key: string,\n    typedValue: TypedValue,\n    propertyDefinitions: Record<string, ElementDefinition>\n  ): void {\n    if (\n      !baseResourceProperties.has(key) &&\n      !(key in propertyDefinitions) &&\n      !isChoiceOfType(key, typedValue, propertyDefinitions) &&\n      !this.#checkPrimitiveElement(path, key, typedValue)\n    ) {\n      const expression = `${path}.${key}`;\n      this.#issues.push(createStructureIssue(expression, `Invalid additional property \"${expression}\"`));\n    }\n  }\n\n  /**\n   * Checks the element for a primitive.\n   *\n   * FHIR elements with primitive data types are represented in two parts:\n   *   1) A JSON property with the name of the element, which has a JSON type of number, boolean, or string\n   *   2) a JSON property with _ prepended to the name of the element, which, if present, contains the value's id and/or extensions\n   *\n   * See: https://hl7.org/fhir/json.html#primitive\n   *\n   * @param path The path to the property\n   * @param key\n   * @param typedValue\n   */\n  #checkPrimitiveElement(path: string, key: string, typedValue: TypedValue): boolean {\n    // Primitive element starts with underscore\n    if (!key.startsWith('_')) {\n      return false;\n    }\n\n    // Validate the non-underscore property exists\n    const primitiveKey = key.slice(1);\n    if (!(primitiveKey in typedValue.value)) {\n      return false;\n    }\n\n    // Then validate the element\n    this.#validateObject({ type: 'Element', value: typedValue.value[key] }, path);\n    return true;\n  }\n\n  #createIssue(elementDefinition: ElementDefinition, message: string): void {\n    this.#issues.push(createStructureIssue(elementDefinition.path as string, message));\n  }\n}\n\nfunction isIntegerType(propertyType: PropertyType): boolean {\n  return (\n    propertyType === PropertyType.integer ||\n    propertyType === PropertyType.positiveInt ||\n    propertyType === PropertyType.unsignedInt\n  );\n}\n\nfunction isChoiceOfType(\n  key: string,\n  typedValue: TypedValue,\n  propertyDefinitions: Record<string, ElementDefinition>\n): boolean {\n  for (const propertyName of Object.keys(propertyDefinitions)) {\n    if (!propertyName.endsWith('[x]')) {\n      continue;\n    }\n    const basePropertyName = propertyName.replace('[x]', '');\n    if (!key.startsWith(basePropertyName)) {\n      continue;\n    }\n    let typedPropertyValue = getTypedPropertyValue(typedValue, propertyName);\n    if (!typedPropertyValue) {\n      continue;\n    }\n    if (Array.isArray(typedPropertyValue)) {\n      // At present, there are no choice types that are arrays in the FHIR spec\n      // Leaving this here to make TypeScript happy, and in case that changes\n      typedPropertyValue = typedPropertyValue[0];\n    }\n    if (typedPropertyValue && key === basePropertyName + capitalize(typedPropertyValue.type)) {\n      return true;\n    }\n  }\n  return false;\n}\n\n/**\n * Recursively checks for null values in an object.\n *\n * Note that \"null\" is a special value in JSON that is not allowed in FHIR.\n *\n * @param value Input value of any type.\n * @param path Path string to the value for OperationOutcome.\n * @param issues Output list of issues.\n */\nexport function checkForNull(value: unknown, path: string, issues: OperationOutcomeIssue[]): void {\n  if (value === null) {\n    issues.push(createStructureIssue(path, 'Invalid null value'));\n  } else if (Array.isArray(value)) {\n    checkArrayForNull(value, path, issues);\n  } else if (typeof value === 'object') {\n    checkObjectForNull(value as Record<string, unknown>, path, issues);\n  }\n}\n\nfunction checkArrayForNull(array: unknown[], path: string, issues: OperationOutcomeIssue[]): void {\n  for (let i = 0; i < array.length; i++) {\n    if (array[i] === undefined) {\n      issues.push(createStructureIssue(`${path}[${i}]`, 'Invalid undefined value'));\n    } else {\n      checkForNull(array[i], `${path}[${i}]`, issues);\n    }\n  }\n}\n\nfunction checkObjectForNull(obj: Record<string, unknown>, path: string, issues: OperationOutcomeIssue[]): void {\n  for (const [key, value] of Object.entries(obj)) {\n    checkForNull(value, `${path}${path ? '.' : ''}${key}`, issues);\n  }\n}\n\nexport function createStructureIssue(expression: string, details: string): OperationOutcomeIssue {\n  return {\n    severity: 'error',\n    code: 'structure',\n    details: {\n      text: details,\n    },\n    expression: [expression],\n  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+{"version":3,"file":"schema.mjs","sources":["../../src/schema.ts"],"sourcesContent":["import { ElementDefinition, OperationOutcomeIssue, Resource } from '@medplum/fhirtypes';\nimport { getTypedPropertyValue, toTypedValue } from './fhirpath';\nimport { OperationOutcomeError, validationError } from './outcomes';\nimport { globalSchema, PropertyType, TypedValue } from './types';\nimport { capitalize, getExtensionValue, isEmpty, isLowerCase } from './utils';\n\n/*\n * This file provides schema validation utilities for FHIR JSON objects.\n *\n * See: [JSON Representation of Resources](https://hl7.org/fhir/json.html)\n * See: [FHIR Data Types](https://www.hl7.org/fhir/datatypes.html)\n */\n\nconst fhirTypeToJsType: Record<string, string> = {\n  base64Binary: 'string',\n  boolean: 'boolean',\n  canonical: 'string',\n  code: 'string',\n  date: 'string',\n  dateTime: 'string',\n  decimal: 'number',\n  id: 'string',\n  instant: 'string',\n  integer: 'number',\n  markdown: 'string',\n  oid: 'string',\n  positiveInt: 'number',\n  string: 'string',\n  time: 'string',\n  unsignedInt: 'number',\n  uri: 'string',\n  url: 'string',\n  uuid: 'string',\n  xhtml: 'string',\n  'http://hl7.org/fhirpath/System.String': 'string',\n};\n\nconst baseResourceProperties = new Set<string>([\n  // Resource\n  'resourceType',\n  'id',\n  'meta',\n  'implicitRules',\n  'language',\n\n  // DomainResource\n  'text',\n  'contained',\n  'extension',\n  'modifierExtension',\n]);\n\n/**\n * Returns true if the given string is a valid FHIR resource type.\n *\n * ```ts\n * isResourceType('Patient'); // true\n * isResourceType('XYZ'); // false\n * ```\n *\n * Note that this depends on globalSchema, which is populated by the StructureDefinition loader.\n *\n * In a server context, you can load all schema definitions:\n *\n * ```ts\n * import { indexStructureDefinitionBundle } from '@medplum/core';\n * import { readJson } from '@medplum/definitions';\n * import { Bundle } from '@medplum/fhirtypes';\n *\n * indexStructureDefinitionBundle(readJson('fhir/r4/profiles-resources.json') as Bundle);\n * ```\n *\n * In a client context, you can load the schema definitions using MedplumClient:\n *\n * ```ts\n * import { MedplumClient } from '@medplum/core';\n *\n * const medplum = new MedplumClient();\n * await medplum.requestSchema('Patient');\n * ```\n *\n * @param resourceType The candidate resource type string.\n * @returns True if the resource type is a valid FHIR resource type.\n */\nexport function isResourceType(resourceType: string): boolean {\n  const typeSchema = globalSchema.types[resourceType];\n  return (\n    typeSchema &&\n    typeSchema.structureDefinition.id === resourceType &&\n    typeSchema.structureDefinition.kind === 'resource'\n  );\n}\n\n/**\n * Validates that the given string is a valid FHIR resource type.\n * On success, silently returns void.\n * On failure, throws an OperationOutcomeError.\n *\n * ```ts\n * validateResourceType('Patient'); // nothing\n * validateResourceType('XYZ'); // throws OperationOutcomeError\n * ```\n *\n * Note that this depends on globalSchema, which is populated by the StructureDefinition loader.\n *\n * In a server context, you can load all schema definitions:\n *\n * ```ts\n * import { indexStructureDefinitionBundle } from '@medplum/core';\n * import { readJson } from '@medplum/definitions';\n * import { Bundle } from '@medplum/fhirtypes';\n *\n * indexStructureDefinitionBundle(readJson('fhir/r4/profiles-resources.json') as Bundle);\n * ```\n *\n * In a client context, you can load the schema definitions using MedplumClient:\n *\n * ```ts\n * import { MedplumClient } from '@medplum/core';\n *\n * const medplum = new MedplumClient();\n * await medplum.requestSchema('Patient');\n * ```\n *\n * @param resourceType The candidate resource type string.\n * @returns True if the resource type is a valid FHIR resource type.\n */\nexport function validateResourceType(resourceType: string): void {\n  if (!resourceType) {\n    throw new OperationOutcomeError(validationError('Resource type is null'));\n  }\n  if (!isResourceType(resourceType)) {\n    throw new OperationOutcomeError(validationError('Unknown resource type'));\n  }\n}\n\n/**\n * Validates a candidate FHIR resource object.\n * On success, silently returns void.\n * On failure, throws an OperationOutcomeError with issues for each violation.\n *\n * ```ts\n * validateResource({ resourceType: 'Patient' }); // nothing\n * validateResource({ resourceType: 'XYZ' }); // throws OperationOutcomeError\n * ```\n *\n * Note that this depends on globalSchema, which is populated by the StructureDefinition loader.\n *\n * In a server context, you can load all schema definitions:\n *\n * ```ts\n * import { indexStructureDefinitionBundle } from '@medplum/core';\n * import { readJson } from '@medplum/definitions';\n * import { Bundle } from '@medplum/fhirtypes';\n *\n * indexStructureDefinitionBundle(readJson('fhir/r4/profiles-resources.json') as Bundle);\n * ```\n *\n * In a client context, you can load the schema definitions using MedplumClient:\n *\n * ```ts\n * import { MedplumClient } from '@medplum/core';\n *\n * const medplum = new MedplumClient();\n * await medplum.requestSchema('Patient');\n * ```\n *\n * @param resourceType The candidate resource type string.\n * @returns True if the resource type is a valid FHIR resource type.\n */\nexport function validateResource<T extends Resource>(resource: T): void {\n  new FhirSchemaValidator(resource).validate();\n}\n\nexport class FhirSchemaValidator<T extends Resource> {\n  readonly #issues: OperationOutcomeIssue[];\n  readonly #root: T;\n\n  constructor(root: T) {\n    this.#issues = [];\n    this.#root = root;\n  }\n\n  validate(): void {\n    const resource = this.#root;\n    if (!resource) {\n      throw new OperationOutcomeError(validationError('Resource is null'));\n    }\n\n    const resourceType = resource.resourceType;\n    if (!resourceType) {\n      throw new OperationOutcomeError(validationError('Missing resource type'));\n    }\n\n    // Check for \"null\" once for the entire object hierarchy\n    checkForNull(resource, '', this.#issues);\n\n    this.#validateObject(toTypedValue(resource), resourceType);\n\n    if (this.#issues.length > 0) {\n      throw new OperationOutcomeError({\n        resourceType: 'OperationOutcome',\n        issue: this.#issues,\n      });\n    }\n  }\n\n  #validateObject(typedValue: TypedValue, path: string): void {\n    const definition = globalSchema.types[typedValue.type];\n    if (!definition) {\n      throw new OperationOutcomeError(validationError('Unknown type: ' + typedValue.type));\n    }\n\n    const propertyDefinitions = definition.properties;\n    this.#checkProperties(path, propertyDefinitions, typedValue);\n    this.#checkAdditionalProperties(path, typedValue, propertyDefinitions);\n  }\n\n  #checkProperties(path: string, propertyDefinitions: Record<string, ElementDefinition>, typedValue: TypedValue): void {\n    for (const [key, elementDefinition] of Object.entries(propertyDefinitions)) {\n      this.#checkProperty(path + '.' + key, elementDefinition, typedValue);\n    }\n  }\n\n  #checkProperty(path: string, elementDefinition: ElementDefinition, typedValue: TypedValue): void {\n    const propertyName = path.split('.').pop() as string;\n    const value = getTypedPropertyValue(typedValue, propertyName);\n\n    if (isEmpty(value)) {\n      if (elementDefinition.min !== undefined && elementDefinition.min > 0) {\n        this.#issues.push(createStructureIssue(path, 'Missing required property'));\n      }\n      return;\n    }\n\n    if (elementDefinition.max === '*') {\n      if (!Array.isArray(value)) {\n        this.#issues.push(createStructureIssue(path, 'Expected array for property'));\n        return;\n      }\n      for (const item of value) {\n        this.#checkPropertyValue(path, elementDefinition, item);\n      }\n    } else {\n      if (Array.isArray(value)) {\n        this.#issues.push(createStructureIssue(path, 'Expected single value for property'));\n        return;\n      }\n      this.#checkPropertyValue(path, elementDefinition, value as TypedValue);\n    }\n  }\n\n  #checkPropertyValue(path: string, elementDefinition: ElementDefinition, typedValue: TypedValue): void {\n    if (typedValue.value === null) {\n      // Null handled separately\n      return;\n    }\n\n    if (isLowerCase(typedValue.type.charAt(0))) {\n      this.#validatePrimitiveType(elementDefinition, typedValue);\n    } else {\n      this.#validateObject(typedValue, path);\n    }\n  }\n\n  #validatePrimitiveType(elementDefinition: ElementDefinition, typedValue: TypedValue): void {\n    const { type, value } = typedValue;\n\n    if (value === null) {\n      // Null handled separately, so this code should never be reached\n      // Leaving this check in place for now, in case we change the null handling\n      return;\n    }\n\n    // First, make sure the value is the correct JS type\n    const expectedType = fhirTypeToJsType[typedValue.type];\n    if (typeof value !== expectedType) {\n      this.#createIssue(elementDefinition, 'Invalid type for ' + type);\n      return;\n    }\n\n    // Then, perform additional checks for specialty types\n    if (expectedType === 'string') {\n      this.#validateString(elementDefinition, type as PropertyType, value as string);\n    } else if (expectedType === 'number') {\n      this.#validateNumber(elementDefinition, type as PropertyType, value as number);\n    }\n  }\n\n  #validateString(elementDefinition: ElementDefinition, type: PropertyType, value: string): void {\n    if (!value.trim()) {\n      this.#createIssue(elementDefinition, 'Invalid empty string');\n      return;\n    }\n\n    // Try to get the regex\n    const valueDefinition = globalSchema.types[type]?.properties?.['value'];\n    if (valueDefinition?.type) {\n      const regex = getExtensionValue(valueDefinition.type[0], 'http://hl7.org/fhir/StructureDefinition/regex');\n      if (regex) {\n        if (!value.match(new RegExp(regex))) {\n          this.#createIssue(elementDefinition, 'Invalid ' + type + ' format');\n        }\n      }\n    }\n  }\n\n  #validateNumber(elementDefinition: ElementDefinition, type: PropertyType, value: number): void {\n    if (isNaN(value) || !isFinite(value)) {\n      this.#createIssue(elementDefinition, 'Invalid ' + type + ' value');\n      return;\n    }\n\n    if (isIntegerType(type) && !Number.isInteger(value)) {\n      this.#createIssue(elementDefinition, 'Number is not an integer');\n    }\n\n    if (type === PropertyType.positiveInt && value <= 0) {\n      this.#createIssue(elementDefinition, 'Number is less than or equal to zero');\n    }\n\n    if (type === PropertyType.unsignedInt && value < 0) {\n      this.#createIssue(elementDefinition, 'Number is negative');\n    }\n  }\n\n  #checkAdditionalProperties(\n    path: string,\n    typedValue: TypedValue,\n    propertyDefinitions: Record<string, ElementDefinition>\n  ): void {\n    const object = typedValue.value as Record<string, unknown>;\n    for (const key of Object.keys(object)) {\n      this.#checkAdditionalProperty(path, key, typedValue, propertyDefinitions);\n    }\n  }\n\n  /**\n   * Checks if the given property is allowed on the given object.\n   * @param path The path of the current object.\n   * @param key The key of a property to check.\n   * @param typedValue The current object.\n   * @param propertyDefinitions The property definitions of the current object.\n   */\n  #checkAdditionalProperty(\n    path: string,\n    key: string,\n    typedValue: TypedValue,\n    propertyDefinitions: Record<string, ElementDefinition>\n  ): void {\n    if (\n      !baseResourceProperties.has(key) &&\n      !(key in propertyDefinitions) &&\n      !isChoiceOfType(key, typedValue, propertyDefinitions) &&\n      !this.#checkPrimitiveElement(path, key, typedValue)\n    ) {\n      const expression = `${path}.${key}`;\n      this.#issues.push(createStructureIssue(expression, `Invalid additional property \"${expression}\"`));\n    }\n  }\n\n  /**\n   * Checks the element for a primitive.\n   *\n   * FHIR elements with primitive data types are represented in two parts:\n   *   1) A JSON property with the name of the element, which has a JSON type of number, boolean, or string\n   *   2) a JSON property with _ prepended to the name of the element, which, if present, contains the value's id and/or extensions\n   *\n   * See: https://hl7.org/fhir/json.html#primitive\n   *\n   * @param path The path to the property\n   * @param key\n   * @param typedValue\n   */\n  #checkPrimitiveElement(path: string, key: string, typedValue: TypedValue): boolean {\n    // Primitive element starts with underscore\n    if (!key.startsWith('_')) {\n      return false;\n    }\n\n    // Validate the non-underscore property exists\n    const primitiveKey = key.slice(1);\n    if (!(primitiveKey in typedValue.value)) {\n      return false;\n    }\n\n    // Then validate the element\n    this.#validateObject({ type: 'Element', value: typedValue.value[key] }, path);\n    return true;\n  }\n\n  #createIssue(elementDefinition: ElementDefinition, message: string): void {\n    this.#issues.push(createStructureIssue(elementDefinition.path as string, message));\n  }\n}\n\nfunction isIntegerType(propertyType: PropertyType): boolean {\n  return (\n    propertyType === PropertyType.integer ||\n    propertyType === PropertyType.positiveInt ||\n    propertyType === PropertyType.unsignedInt\n  );\n}\n\nfunction isChoiceOfType(\n  key: string,\n  typedValue: TypedValue,\n  propertyDefinitions: Record<string, ElementDefinition>\n): boolean {\n  for (const propertyName of Object.keys(propertyDefinitions)) {\n    if (!propertyName.endsWith('[x]')) {\n      continue;\n    }\n    const basePropertyName = propertyName.replace('[x]', '');\n    if (!key.startsWith(basePropertyName)) {\n      continue;\n    }\n    let typedPropertyValue = getTypedPropertyValue(typedValue, propertyName);\n    if (!typedPropertyValue) {\n      continue;\n    }\n    if (Array.isArray(typedPropertyValue)) {\n      // At present, there are no choice types that are arrays in the FHIR spec\n      // Leaving this here to make TypeScript happy, and in case that changes\n      typedPropertyValue = typedPropertyValue[0];\n    }\n    if (typedPropertyValue && key === basePropertyName + capitalize(typedPropertyValue.type)) {\n      return true;\n    }\n  }\n  return false;\n}\n\n/**\n * Recursively checks for null values in an object.\n *\n * Note that \"null\" is a special value in JSON that is not allowed in FHIR.\n *\n * @param value Input value of any type.\n * @param path Path string to the value for OperationOutcome.\n * @param issues Output list of issues.\n */\nexport function checkForNull(value: unknown, path: string, issues: OperationOutcomeIssue[]): void {\n  if (value === null) {\n    issues.push(createStructureIssue(path, 'Invalid null value'));\n  } else if (Array.isArray(value)) {\n    checkArrayForNull(value, path, issues);\n  } else if (typeof value === 'object') {\n    checkObjectForNull(value as Record<string, unknown>, path, issues);\n  }\n}\n\nfunction checkArrayForNull(array: unknown[], path: string, issues: OperationOutcomeIssue[]): void {\n  for (let i = 0; i < array.length; i++) {\n    if (array[i] === undefined) {\n      issues.push(createStructureIssue(`${path}[${i}]`, 'Invalid undefined value'));\n    } else {\n      checkForNull(array[i], `${path}[${i}]`, issues);\n    }\n  }\n}\n\nfunction checkObjectForNull(obj: Record<string, unknown>, path: string, issues: OperationOutcomeIssue[]): void {\n  for (const [key, value] of Object.entries(obj)) {\n    checkForNull(value, `${path}${path ? 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package/dist/esm/search/match.mjs

@@ -1,9 +1,8 @@
-import '../fhirpath/atoms.mjs';
-import { evalFhirPath } from '../fhirpath/parse.mjs';
 import '../fhirlexer/parse.mjs';
 import '../fhirlexer/tokenize.mjs';
 import { globalSchema } from '../types.mjs';
 import '../utils.mjs';
+import { evalFhirPath } from '../fhirpath/parse.mjs';
 import { getSearchParameterDetails, SearchParameterType } from './details.mjs';
 import { Operator } from './search.mjs';
 

package/dist/esm/search/match.mjs.map

@@ -1 +1 @@
-{"version":3,"file":"match.mjs","sources":["../../../src/search/match.ts"],"sourcesContent":["import { Reference, Resource, SearchParameter } from '@medplum/fhirtypes';\nimport { evalFhirPath } from '../fhirpath';\nimport { globalSchema } from '../types';\nimport { getSearchParameterDetails, SearchParameterType } from './details';\nimport { Filter, Operator, SearchRequest } from './search';\n\n/**\n * Determines if the resource matches the search request.\n * @param resource The resource that was created or updated.\n * @param searchRequest The subscription criteria as a search request.\n * @returns True if the resource satisfies the search request.\n */\nexport function matchesSearchRequest(resource: Resource, searchRequest: SearchRequest): boolean {\n  if (searchRequest.resourceType !== resource.resourceType) {\n    return false;\n  }\n  if (searchRequest.filters) {\n    for (const filter of searchRequest.filters) {\n      if (!matchesSearchFilter(resource, searchRequest, filter)) 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matchesDateValue(resourceValue as string, filter.operator, filterValue);\n      if (match) {\n        return !negated;\n      }\n    }\n  }\n  // If \"not equals\" and no matches, then return true\n  // If \"equals\" and no matches, then return false\n  return negated;\n}\n\nfunction matchesDateValue(resourceValue: string, operator: Operator, filterValue: string): boolean {\n  switch (operator) {\n    case Operator.STARTS_AFTER:\n    case Operator.GREATER_THAN:\n      return resourceValue > filterValue;\n    case Operator.GREATER_THAN_OR_EQUALS:\n      return resourceValue >= filterValue;\n    case Operator.ENDS_BEFORE:\n    case Operator.LESS_THAN:\n      return resourceValue < filterValue;\n    case Operator.LESS_THAN_OR_EQUALS:\n      return resourceValue <= filterValue;\n    case Operator.EQUALS:\n    case Operator.NOT_EQUALS:\n      return resourceValue === filterValue;\n  }\n  return false;\n}\n\nfunction isNegated(operator: Operator): boolean {\n  return operator === 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package/dist/types/bundle.d.ts

@@ -0,0 +1,11 @@
+import { Bundle } from '@medplum/fhirtypes';
+/**
+ * More on Bundles can be found here
+ * http://hl7.org/fhir/R4/bundle.html
+ */
+/**
+ * Takes a bundle and creates a Transaction Type bundle
+ * @param bundle The Bundle object that we'll receive from the search query
+ * @returns transaction type bundle
+ */
+export declare function convertToTransactionBundle(bundle: Bundle): Bundle;

package/dist/types/client.d.ts

@@ -30,6 +30,14 @@ export interface MedplumClientOptions {
      * Use this if you want to use a separate OAuth server.
      */
     authorizeUrl?: string;
+    /**
+     * FHIR URL path.
+     *
+     * Default value is "fhir/R4/".
+     *
+     * Use this if you want to use a different path when connecting to a FHIR server.
+     */
+    fhirUrlPath?: string;
     /**
      * OAuth2 token URL.
      *
@@ -548,6 +556,13 @@ export declare class MedplumClient extends EventTarget {
      * @category Authentication
      */
     signInWithExternalAuth(authorizeUrl: string, clientId: string, redirectUri: string, baseLogin: BaseLoginRequest): Promise<void>;
+    /**
+     * Exchange an external access token for a Medplum access token.
+     * @param token The access token that was generated by the external identity provider.
+     * @param clientId The ID of the `ClientApplication` in your Medplum project that will be making the exchange request.
+     * @category Authentication
+     */
+    exchangeExternalAccessToken(token: string, clientId?: string): Promise<ProfileResource>;
     /**
      * Builds the external identity provider redirect URI.
      * @param authorizeUrl The external authorization URL.
@@ -670,6 +685,28 @@ export declare class MedplumClient extends EventTarget {
      * @returns Promise to the array of search results.
      */
     searchResources<K extends ResourceType>(resourceType: K, query?: QueryTypes, options?: RequestInit): ReadablePromise<ExtractResource<K>[]>;
+    /**
+     * Creates an
+     * [async generator](https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/AsyncGenerator)
+     * over a series of FHIR search requests for paginated search results. Each iteration of the generator yields
+     * the array of resources on each page.
+     *
+     *
+     * ```typescript
+     * for await (const page of medplum.searchResourcePages('Patient', { _count: 10 })) {
+     *  for (const patient of page) {
+     *    console.log(`Processing Patient resource with ID: ${patient.id}`);
+     *  }
+     * }
+     * ```
+     *
+     * @category Search
+     * @param resourceType The FHIR resource type.
+     * @param query Optional FHIR search query or structured query object. Can be any valid input to the URLSearchParams() constructor.
+     * @param options Optional fetch options.
+     * @returns An async generator, where each result is an array of resources for each page.
+     */
+    searchResourcePages<K extends ResourceType>(resourceType: K, query?: QueryTypes, options?: RequestInit): AsyncGenerator<ExtractResource<K>[]>;
     /**
      * Searches a ValueSet resource using the "expand" operation.
      * See: https://www.hl7.org/fhir/operation-valueset-expand.html

package/dist/types/fhirpath/atoms.d.ts

@@ -14,10 +14,10 @@ export declare class LiteralAtom implements Atom {
     toString(): string;
 }
 export declare class SymbolAtom implements Atom {
-    #private;
     readonly name: string;
     constructor(name: string);
     eval(context: TypedValue[]): TypedValue[];
+    private evalValue;
     toString(): string;
 }
 export declare class EmptySetAtom implements Atom {

package/dist/types/index.d.ts

@@ -1,3 +1,4 @@
+export * from './bundle';
 export * from './cache';
 export * from './client';
 export * from './fhirlexer';

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@medplum/core",
-  "version": "2.0.13",
+  "version": "2.0.14",
   "description": "Medplum TS/JS Library",
   "author": "Medplum <hello@medplum.com>",
   "license": "Apache-2.0",