@medplum/cli 4.3.0 → 4.3.1

package/dist/cjs/index.cjs

@@ -11,7 +11,7 @@ Configuration values come from a file named **medplum.<tag>.config.server.json**
 `+ae.yellow("**Services must be restarted to apply changes.**"))).argument("<tag>","The Medplum stack tag").option("--file [file]",rr("File to provide overrides for **apiPort**, **baseUrl**, **appDomainName** and **storageDomainName** values that appear in the config file.")).option("--dryrun","Displays the operations that would be performed using the specified command without actually running them.").option("--yes","Automatically confirm the update").action(qs),y(t,new g("update-server").alias("deploy-server").description("Update the server image").argument("<tag>","The Medplum stack tag").option("--file [file]","Specifies the config file to use. If not specified, the file is based on the tag.").option("--to-version [version]","Specifies the version of the configuration to update. If not specified, the latest version is updated.").action(Vs)),t.command("update-app").alias("deploy-app").description("Update the app site").argument("<tag>","The Medplum stack tag").option("--file [file]","Specifies the config file to use. If not specified, the file is based on the tag.").option("--to-version [version]","Specifies the version of the configuration to update. If not specified, the latest version is updated.").option("--dryrun","Displays the operations that would be performed using the specified command without actually running them.").option("--tar-path [tarPath]","Specifies the path to the extracted tarball of the @medplum/app package.").action(Fs),t.command("update-bucket-policies").description("Update S3 bucket policies").argument("<tag>","The Medplum stack tag").option("--file [file]","Specifies the config file to use. If not specified, the file is based on the tag.").option("--dryrun","Displays the operations that would be performed using the specified command without actually running them.").action(Ks),t}var Xs=new g("save"),zs=new g("deploy"),Ys=new g("create"),Ke=new g("bot");y(Ke,Xs);y(Ke,zs);y(Ke,Ys);var br=new g("save-bot"),Pr=new g("deploy-bot"),Cr=new g("create-bot");Xs.description("Saving the bot").argument("<botName>").action(async(t,e)=>{let r=await R(e);await Ot(r,t)});zs.description("Deploy the app to AWS").argument("<botName>").action(async(t,e)=>{let r=await R(e);await Ot(r,t,!0)});Ys.arguments("<botName> <projectId> <sourceFile> <distFile>").description("Creating a bot").option("--runtime-version <runtimeVersion>","Runtime version (awslambda, vmcontext)").option("--no-write-config","Do not write bot to config").action(async(t,e,r,o,n)=>{let s=await R(n);await zt(s,t,e,r,o,n.runtimeVersion,!!n.writeConfig)});async function Ot(t,e,r=!1){let o=fo(e),n=[],s=[],i=0,c=0;for(let l of o)try{let u=await t.readResource("Bot",l.id);await Jt(t,l,u),i++,r&&(await Xt(t,l,u),c++)}catch(u){n.push(u),s.push(`${l.name} [${l.id}]`)}if(console.log(`Number of bots saved: ${i}`),console.log(`Number of bots deployed: ${c}`),console.log(`Number of errors: ${n.length}`),n.length)throw new Error(`${n.length} bot(s) had failures. Bots with failures:
 
     ${s.join(`
-    `)}`,{cause:n})}br.description("Saves the bot").argument("<botName>").action(async(t,e)=>{let r=await R(e);await Ot(r,t)});Pr.description("Deploy the bot to AWS").argument("<botName>").action(async(t,e)=>{let r=await R(e);await Ot(r,t,!0)});Cr.arguments("<botName> <projectId> <sourceFile> <distFile>").description("Creates and saves the bot").action(async(t,e,r,o,n)=>{let s=await R(n);await zt(s,t,e,r,o)});var xt=require("node:fs"),Tr=require("node:path"),Qs=require("node:readline");var ei=new g("export"),ti=new g("import"),$t=new g("bulk");y($t,ei);y($t,ti);ei.option("-e, --export-level <exportLevel>",'Optional export level. Defaults to system level export. "Group/:id" - Group of Patients, "Patient" - All Patients.').option("-t, --types <types>","optional resource types to export").option("-s, --since <since>","optional Resources will be included in the response if their state has changed after the supplied time (e.g. if Resource.meta.lastUpdated is later than the supplied _since time).").option("-d, --target-directory <targetDirectory>","optional target directory to save files from the bulk export operations.").action(async t=>{let{exportLevel:e,types:r,since:o,targetDirectory:n}=t,s=await R(t);(await s.bulkExport(e,r,o,{pollStatusOnAccepted:!0})).output?.forEach(async({type:c,url:l})=>{let u=new URL(l),h=await s.download(l),f=`${c}_${u.pathname}`.replace(/[^a-zA-Z0-9]+/g,"_")+".ndjson",S=(0,Tr.resolve)(n??"",f);(0,xt.writeFile)(`${S}`,await h.text(),()=>{console.log(`${S} is created`)})})});ti.argument("<filename>","File Name").option("--num-resources-per-request <numResourcesPerRequest>","optional number of resources to import per batch request. Defaults to 25.","25").option("--add-extensions-for-missing-values","optional flag to add extensions for missing values in a resource",!1).option("-d, --target-directory <targetDirectory>","optional target directory of file to be imported").action(async(t,e)=>{let{numResourcesPerRequest:r,addExtensionsForMissingValues:o,targetDirectory:n}=e,s=(0,Tr.resolve)(n??process.cwd(),t),i=await R(e);await Wu(s,Number.parseInt(r,10),i,o)});async function Wu(t,e,r,o){let n=[],s=(0,xt.createReadStream)(t),i=(0,Qs.createInterface)({input:s});for await(let c of i){let l=Ku(c,o);n.push({resource:l,request:{method:"POST",url:l.resourceType}}),n.length%e===0&&(await Zs(n,r),n=[])}n.length>0&&await Zs(n,r)}async function Zs(t,e){(await e.executeBatch({resourceType:"Bundle",type:"transaction",entry:t})).entry?.forEach(o=>{J(o.response)})}function Ku(t,e){let r=JSON.parse(t);return e?qu(r):r}function qu(t){return t.resourceType==="ExplanationOfBenefit"?Hu(t):t}function Hu(t){return t.provider||(t.provider=Yt()),t.item?.forEach(e=>{e?.productOrService||(e.productOrService=Yt())}),t}var Lt=require("@medplum/core");var oi=require("node:net"),ni=require("@medplum/core"),Or=$(require("iconv-lite"),1),ci=require("@medplum/core"),li=$(require("node:net"),1),ri=class extends EventTarget{addEventListener(t,e,r){super.addEventListener(t,e,r)}removeEventListener(t,e,r){super.removeEventListener(t,e,r)}};var Gu=class extends Event{constructor(t,e){super("message"),this.connection=t,this.message=e}},Nt=class extends Event{constructor(t){super("error"),this.error=t}},si=class extends Event{constructor(){super("close")}},ii=class extends ri{constructor(t,e="utf-8",r=!1){super(),this.chunks=[],this.messageQueue=[],this.socket=t,this.encoding=e,this.enhancedMode=r,t.on("data",o=>{try{if(this.appendData(o),o.at(-2)===28&&o.at(-1)===13){let n=Buffer.concat(this.chunks),s=n.subarray(1,n.length-2),i=Or.default.decode(s,this.encoding),c=ni.Hl7Message.parse(i);this.dispatchEvent(new Gu(this,c)),this.resetBuffer()}}catch(n){this.dispatchEvent(new Nt(n))}}),t.on("error",o=>{this.resetBuffer(),this.dispatchEvent(new Nt(o))}),t.on("end",()=>{this.close()}),this.addEventListener("message",o=>{r&&this.send(o.message.buildAck({ackCode:"CA"}));let n=this.messageQueue.shift();if(!n){this.dispatchEvent(new Nt(new Error(`Received a message when no pending messages were in the queue. Message: ${o.message}`)));return}n.resolve?.(o.message)})}sendImpl(t,e){this.messageQueue.push(e);let r=t.toString(),o=Or.default.encode(r,this.encoding),n=Buffer.alloc(o.length+3);n.writeInt8(11,0),o.copy(n,1),n.writeInt8(28,o.length+1),n.writeInt8(13,o.length+2),this.socket.write(n)}send(t){this.sendImpl(t,{message:t})}async sendAndWait(t){return new Promise((e,r)=>{let o={message:t,resolve:e,reject:r};this.sendImpl(t,o)})}close(){this.socket.end(),this.socket.destroy(),this.dispatchEvent(new si)}appendData(t){this.chunks.push(t)}resetBuffer(){this.chunks=[]}},ai=class extends ri{constructor(t){super(),this.options=t,this.host=this.options.host,this.port=this.options.port,this.encoding=this.options.encoding,this.keepAlive=this.options.keepAlive??!1,this.connectTimeout=this.options.connectTimeout??3e4}connect(){return this.connection?Promise.resolve(this.connection):(this.socket&&(this.socket.removeAllListeners(),this.socket.destroy(),this.socket=void 0),new Promise((t,e)=>{this.socket=(0,oi.connect)({host:this.host,port:this.port,keepAlive:this.keepAlive}),this.connectTimeout>0&&(this.socket.setTimeout(this.connectTimeout),this.socket.on("timeout",()=>{let r=new Error(`Connection timeout after ${this.connectTimeout}ms`);this.socket&&(this.socket.destroy(),this.socket=void 0),e(r)})),this.socket.on("connect",()=>{if(!this.socket)return;let r;this.connection=r=new ii(this.socket,this.encoding),this.socket.setTimeout(0),r.addEventListener("close",()=>{this.socket=void 0,this.dispatchEvent(new si)}),r.addEventListener("error",o=>{this.dispatchEvent(new Nt(o.error))}),t(this.connection)}),this.socket.on("error",r=>{this.socket&&(this.socket.destroy(),this.socket=void 0),e(r)})}))}async send(t){return(await this.connect()).send(t)}async sendAndWait(t){return(await this.connect()).sendAndWait(t)}close(){this.socket&&(this.socket.removeAllListeners(),this.socket.destroy(),this.socket=void 0),this.connection&&(this.connection.close(),delete this.connection)}},ui=class{constructor(t){this.handler=t}start(t,e,r=!1){let o=li.default.createServer(s=>{let i=new ii(s,e,r);this.handler(i)}),n=async s=>{s?.code==="EADDRINUSE"&&(await(0,ci.sleep)(50),o.close(),o.listen(t))};o.on("error",n),o.once("listening",()=>{o.off("error",n)}),o.listen(t),this.server=o}async stop(){return new Promise((t,e)=>{if(!this.server){e(new Error("Stop was called but there is no server running"));return}this.server.close(r=>{if(r){e(r);return}t()}),this.server=void 0})}};var pi=require("node:fs");var Vu=new g("send").description("Send an HL7 v2 message via MLLP").argument("<host>","The destination host name or IP address").argument("<port>","The destination port number").argument("[body]","Optional HL7 message body").option("--generate-example","Generate a sample HL7 message").option("--file <file>","Read the HL7 message from a file").option("--encoding <encoding>","The encoding to use").action(async(t,e,r,o)=>{if(o.generateExample?r=Xu():o.file&&(r=(0,pi.readFileSync)(o.file,"utf8")),!r)throw new Error("Missing HL7 message body");let n=new ai({host:t,port:Number.parseInt(e,10),encoding:o.encoding});try{let s=await n.sendAndWait(Lt.Hl7Message.parse(r));console.log(s.toString().replaceAll("\r",`
+    `)}`,{cause:n})}br.description("Saves the bot").argument("<botName>").action(async(t,e)=>{let r=await R(e);await Ot(r,t)});Pr.description("Deploy the bot to AWS").argument("<botName>").action(async(t,e)=>{let r=await R(e);await Ot(r,t,!0)});Cr.arguments("<botName> <projectId> <sourceFile> <distFile>").description("Creates and saves the bot").action(async(t,e,r,o,n)=>{let s=await R(n);await zt(s,t,e,r,o)});var xt=require("node:fs"),Tr=require("node:path"),Qs=require("node:readline");var ei=new g("export"),ti=new g("import"),$t=new g("bulk");y($t,ei);y($t,ti);ei.option("-e, --export-level <exportLevel>",'Optional export level. Defaults to system level export. "Group/:id" - Group of Patients, "Patient" - All Patients.').option("-t, --types <types>","optional resource types to export").option("-s, --since <since>","optional Resources will be included in the response if their state has changed after the supplied time (e.g. if Resource.meta.lastUpdated is later than the supplied _since time).").option("-d, --target-directory <targetDirectory>","optional target directory to save files from the bulk export operations.").action(async t=>{let{exportLevel:e,types:r,since:o,targetDirectory:n}=t,s=await R(t);(await s.bulkExport(e,r,o,{pollStatusOnAccepted:!0})).output?.forEach(async({type:c,url:l})=>{let u=new URL(l),h=await s.download(l),f=`${c}_${u.pathname}`.replace(/[^a-zA-Z0-9]+/g,"_")+".ndjson",S=(0,Tr.resolve)(n??"",f);(0,xt.writeFile)(`${S}`,await h.text(),()=>{console.log(`${S} is created`)})})});ti.argument("<filename>","File Name").option("--num-resources-per-request <numResourcesPerRequest>","optional number of resources to import per batch request. Defaults to 25.","25").option("--add-extensions-for-missing-values","optional flag to add extensions for missing values in a resource",!1).option("-d, --target-directory <targetDirectory>","optional target directory of file to be imported").action(async(t,e)=>{let{numResourcesPerRequest:r,addExtensionsForMissingValues:o,targetDirectory:n}=e,s=(0,Tr.resolve)(n??process.cwd(),t),i=await R(e);await Wu(s,Number.parseInt(r,10),i,o)});async function Wu(t,e,r,o){let n=[],s=(0,xt.createReadStream)(t),i=(0,Qs.createInterface)({input:s});for await(let c of i){let l=Ku(c,o);n.push({resource:l,request:{method:"POST",url:l.resourceType}}),n.length%e===0&&(await Zs(n,r),n=[])}n.length>0&&await Zs(n,r)}async function Zs(t,e){(await e.executeBatch({resourceType:"Bundle",type:"transaction",entry:t})).entry?.forEach(o=>{J(o.response)})}function Ku(t,e){let r=JSON.parse(t);return e?qu(r):r}function qu(t){return t.resourceType==="ExplanationOfBenefit"?Hu(t):t}function Hu(t){return t.provider||(t.provider=Yt()),t.item?.forEach(e=>{e?.productOrService||(e.productOrService=Yt())}),t}var Lt=require("@medplum/core");var oi=require("node:net"),ni=require("@medplum/core"),Or=$(require("iconv-lite"),1),ci=require("@medplum/core"),li=$(require("node:net"),1),ri=class extends EventTarget{addEventListener(t,e,r){super.addEventListener(t,e,r)}removeEventListener(t,e,r){super.removeEventListener(t,e,r)}};var Gu=class extends Event{constructor(t,e){super("message"),this.connection=t,this.message=e}},Nt=class extends Event{constructor(t){super("error"),this.error=t}},si=class extends Event{constructor(){super("close")}},ii=class extends ri{constructor(t,e="utf-8",r=!1){super(),this.chunks=[],this.messageQueue=[],this.socket=t,this.encoding=e,this.enhancedMode=r,t.on("data",o=>{try{if(this.appendData(o),o.at(-2)===28&&o.at(-1)===13){let n=Buffer.concat(this.chunks),s=n.subarray(1,n.length-2),i=Or.default.decode(s,this.encoding),c=ni.Hl7Message.parse(i);this.dispatchEvent(new Gu(this,c)),this.resetBuffer()}}catch(n){this.dispatchEvent(new Nt(n))}}),t.on("error",o=>{this.resetBuffer(),this.dispatchEvent(new Nt(o))}),t.on("end",()=>{this.close()}),this.addEventListener("message",o=>{r&&this.send(o.message.buildAck({ackCode:"CA"}));let n=this.messageQueue.shift();if(!n){this.dispatchEvent(new Nt(new Error(`Received a message when no pending messages were in the queue. Message: ${o.message}`)));return}n.resolve?.(o.message)})}sendImpl(t,e){this.messageQueue.push(e);let r=t.toString(),o=Or.default.encode(r,this.encoding),n=Buffer.alloc(o.length+3);n.writeInt8(11,0),o.copy(n,1),n.writeInt8(28,o.length+1),n.writeInt8(13,o.length+2),this.socket.write(n)}send(t){this.sendImpl(t,{message:t})}async sendAndWait(t){return new Promise((e,r)=>{let o={message:t,resolve:e,reject:r};this.sendImpl(t,o)})}close(){this.socket.end(),this.socket.destroy(),this.dispatchEvent(new si)}appendData(t){this.chunks.push(t)}resetBuffer(){this.chunks=[]}},ai=class extends ri{constructor(t){super(),this.options=t,this.host=this.options.host,this.port=this.options.port,this.encoding=this.options.encoding,this.keepAlive=this.options.keepAlive??!1,this.connectTimeout=this.options.connectTimeout??3e4}connect(){return this.connection?Promise.resolve(this.connection):(this.socket&&(this.socket.removeAllListeners(),this.socket.destroy(),this.socket=void 0),new Promise((t,e)=>{this.socket=(0,oi.connect)({host:this.host,port:this.port,keepAlive:this.keepAlive}),this.connectTimeout>0&&(this.socket.setTimeout(this.connectTimeout),this.socket.on("timeout",()=>{let r=new Error(`Connection timeout after ${this.connectTimeout}ms`);this.socket&&(this.socket.destroy(),this.socket=void 0),e(r)})),this.socket.on("connect",()=>{if(!this.socket)return;let r;this.connection=r=new ii(this.socket,this.encoding),this.socket.setTimeout(0),r.addEventListener("close",()=>{this.socket=void 0,this.connection=void 0,this.dispatchEvent(new si)}),r.addEventListener("error",o=>{this.dispatchEvent(new Nt(o.error))}),t(this.connection)}),this.socket.on("error",r=>{this.socket&&(this.socket.destroy(),this.socket=void 0),e(r)})}))}async send(t){return(await this.connect()).send(t)}async sendAndWait(t){return(await this.connect()).sendAndWait(t)}close(){this.socket&&(this.socket.removeAllListeners(),this.socket.destroy(),this.socket=void 0),this.connection&&(this.connection.close(),delete this.connection)}},ui=class{constructor(t){this.handler=t}start(t,e,r=!1){let o=li.default.createServer(s=>{let i=new ii(s,e,r);this.handler(i)}),n=async s=>{s?.code==="EADDRINUSE"&&(await(0,ci.sleep)(50),o.close(),o.listen(t))};o.on("error",n),o.once("listening",()=>{o.off("error",n)}),o.listen(t),this.server=o}async stop(){return new Promise((t,e)=>{if(!this.server){e(new Error("Stop was called but there is no server running"));return}this.server.close(r=>{if(r){e(r);return}t()}),this.server=void 0})}};var pi=require("node:fs");var Vu=new g("send").description("Send an HL7 v2 message via MLLP").argument("<host>","The destination host name or IP address").argument("<port>","The destination port number").argument("[body]","Optional HL7 message body").option("--generate-example","Generate a sample HL7 message").option("--file <file>","Read the HL7 message from a file").option("--encoding <encoding>","The encoding to use").action(async(t,e,r,o)=>{if(o.generateExample?r=Xu():o.file&&(r=(0,pi.readFileSync)(o.file,"utf8")),!r)throw new Error("Missing HL7 message body");let n=new ai({host:t,port:Number.parseInt(e,10),encoding:o.encoding});try{let s=await n.sendAndWait(Lt.Hl7Message.parse(r));console.log(s.toString().replaceAll("\r",`
 `))}finally{n.close()}}),Ju=new g("listen").description("Starts an HL7 v2 MLLP server").argument("<port>").option("--encoding <encoding>","The encoding to use").action(async(t,e)=>{new ui(o=>{o.addEventListener("message",({message:n})=>{console.log(n.toString().replaceAll("\r",`
 `)),o.send(n.buildAck())})}).start(Number.parseInt(t,10),e.encoding),console.log("Listening on port "+t)}),kt=new g("hl7");y(kt,Vu);y(kt,Ju);function Xu(){let t=(0,Lt.formatHl7DateTime)(new Date),e=Date.now().toString();return`MSH|^~\\&|ADTSYS|HOSPITAL|RECEIVER|DEST|${t}||ADT^A01|${e}|P|2.5|
 EVN|A01|${t}||