@medplum/cli 2.0.19 → 2.0.21

package/dist/cjs/index.cjs

@@ -15,6 +15,11 @@ var os = require('os');
 var path = require('path');
 var promises = require('stream/promises');
 var tar = require('tar');
+var clientAcm = require('@aws-sdk/client-acm');
+var clientSsm = require('@aws-sdk/client-ssm');
+var clientSts = require('@aws-sdk/client-sts');
+var crypto = require('crypto');
+var readline = require('readline');
 var child_process = require('child_process');
 var http = require('http');
 
@@ -582,7 +587,439 @@ async function updateServerCommand(tag) {
     console.log(`Service "${ecsService}" updated successfully.`);
 }
 
+const getDomainSetting = (domain) => `${domain}DomainName`;
+const getDomainCertSetting = (domain) => `${domain}SslCertArn`;
+let terminal;
+async function initStackCommand() {
+    const config = { apiPort: 8103, region: 'us-east-1' };
+    terminal = readline.createInterface({ input: process.stdin, output: process.stdout });
+    header('MEDPLUM');
+    print('This tool prepares the necessary prerequisites for deploying Medplum in your AWS account.');
+    print('');
+    print('Most Medplum infrastructure is deployed using the AWS CDK.');
+    print('However, some AWS resources must be created manually, such as email addresses and SSL certificates.');
+    print('This tool will help you create those resources.');
+    print('');
+    print('Upon completion, this tool will:');
+    print('  1. Generate a Medplum CDK config file (i.e., medplum.demo.config.json)');
+    print('  2. Optionally generate an AWS CloudFront signing key');
+    print('  3. Optionally request SSL certificates from AWS Certificate Manager');
+    print('  4. Optionally write server config settings to AWS Parameter Store');
+    print('');
+    print('The Medplum infra config file is an input to the Medplum CDK.');
+    print('The Medplum CDK will create and manage the necessary AWS resources.');
+    print('');
+    print('We will ask a series of questions to generate your infra config file.');
+    print('Some questions have predefined options in [square brackets].');
+    print('Some questions have default values in (parentheses), which you can accept by pressing Enter.');
+    print('Press Ctrl+C at any time to exit.');
+    header('ENVIRONMENT NAME');
+    print('Medplum deployments have a short environment name such as "prod", "staging", "alice", or "demo".');
+    print('The environment name is used in multiple places:');
+    print('  1. As part of config file names (i.e., medplum.demo.config.json)');
+    print('  2. As the base of CloudFormation stack names (i.e., MedplumDemo)');
+    print('  3. AWS Parameter Store keys (i.e., /medplum/demo/...)');
+    config.name = await ask('What is your environment name?', 'demo');
+    print('Using environment name "' + config.name + '"...');
+    header('CONFIG FILE');
+    print('Medplum Infrastructure will create a config file in the current directory.');
+    const configFileName = await ask('What is the config file name?', `medplum.${config.name}.config.json`);
+    if (fs.existsSync(configFileName)) {
+        print('Config file already exists.');
+        await checkOk('Do you want to overwrite the config file?');
+    }
+    print('Using config file "' + configFileName + '"...');
+    writeConfig(configFileName, config);
+    header('AWS REGION');
+    print('Most Medplum resources will be created in a single AWS region.');
+    config.region = await ask('Enter your AWS region:', 'us-east-1');
+    writeConfig(configFileName, config);
+    header('AWS ACCOUNT NUMBER');
+    print('Medplum Infrastructure will use your AWS account number to create AWS resources.');
+    const currentAccountId = await getAccountId(config.region);
+    print('Using the AWS CLI, your current account ID is: ' + currentAccountId);
+    config.accountNumber = await ask('What is your AWS account number?', currentAccountId);
+    writeConfig(configFileName, config);
+    header('STACK NAME');
+    print('Medplum will create a CloudFormation stack to manage AWS resources.');
+    const defaultStackName = 'Medplum' + config.name.charAt(0).toUpperCase() + config.name.slice(1);
+    config.stackName = await ask('Enter your CloudFormation stack name?', defaultStackName);
+    writeConfig(configFileName, config);
+    header('BASE DOMAIN NAME');
+    print('Medplum deploys multiple subdomains for various services.');
+    print('');
+    print('For example, "api." for the REST API and "app." for the web application.');
+    print('The base domain name is the common suffix for all subdomains.');
+    print('');
+    print('For example, if your base domain name is "example.com",');
+    print('then the REST API will be "api.example.com".');
+    print('');
+    print('Note that you must own the base domain, and it must use Route53 DNS.');
+    print('Medplum will create subdomains for you, but you must configure the base domain.');
+    while (!config.domainName) {
+        config.domainName = await ask('Enter your base domain name:');
+    }
+    writeConfig(configFileName, config);
+    header('SUPPORT EMAIL');
+    print('Medplum sends transactional emails to users.');
+    print('For example, emails to new users or for password reset.');
+    print('Medplum will use the support email address to send these emails.');
+    print('Note that you must verify the support email address in SES.');
+    const supportEmail = await ask('Enter your support email address:');
+    header('API DOMAIN NAME');
+    print('Medplum deploys a REST API for the backend services.');
+    config.apiDomainName = await ask('Enter your REST API domain name:', 'api.' + config.domainName);
+    writeConfig(configFileName, config);
+    header('APP DOMAIN NAME');
+    print('Medplum deploys a web application for the user interface.');
+    config.appDomainName = await ask('Enter your web application domain name:', 'app.' + config.domainName);
+    writeConfig(configFileName, config);
+    header('STORAGE DOMAIN NAME');
+    print('Medplum deploys a storage service for file uploads.');
+    config.storageDomainName = await ask('Enter your storage domain name:', 'storage.' + config.domainName);
+    writeConfig(configFileName, config);
+    header('STORAGE BUCKET');
+    print('Medplum uses an S3 bucket to store binary content such as file uploads.');
+    print('Medplum will create a the S3 bucket as part of the CloudFormation stack.');
+    config.storageBucketName = await ask('Enter your storage bucket name:', 'medplum-' + config.name + '-storage');
+    writeConfig(configFileName, config);
+    header('MAX AVAILABILITY ZONES');
+    print('Medplum API servers can be deployed in multiple availability zones.');
+    print('This provides redundancy and high availability.');
+    print('However, it also increases the cost of the deployment.');
+    print('If you want to use all availability zones, choose a large number such as 99.');
+    print('If you want to restrict the number, for example to manage EIP limits,');
+    print('then choose a small number such as 1 or 2.');
+    config.maxAzs = await chooseInt('Enter the maximum number of availability zones:', [1, 2, 3, 99], 2);
+    header('DATABASE INSTANCES');
+    print('Medplum uses a relational database to store data.');
+    print('You can set up your own database,');
+    print('or Medplum can create a new RDS database as part of the CloudFormation stack.');
+    if (await yesOrNo('Do you want to create a new RDS database as part of the CloudFormation stack?')) {
+        print('Medplum will create a new RDS database as part of the CloudFormation stack.');
+        print('');
+        print('If you need high availability, you can choose multiple instances.');
+        print('Use 1 for a single instance, or 2 for a primary and a standby.');
+        config.rdsInstances = await chooseInt('Enter the number of database instances:', [1, 2], 1);
+    }
+    else {
+        print('Medplum will not create a new RDS database.');
+        print('Please create a new RDS database and enter the database name, username, and password.');
+        print('Set the AWS Secrets Manager secret ARN in the config file in the "rdsSecretsArn" setting.');
+        config.rdsSecretsArn = 'TODO';
+    }
+    writeConfig(configFileName, config);
+    header('SERVER INSTANCES');
+    print('Medplum uses AWS Fargate to run the API servers.');
+    print('Medplum will create a new Fargate cluster as part of the CloudFormation stack.');
+    print('Fargate will automatically scale the number of servers up and down.');
+    print('If you need high availability, you can choose multiple instances.');
+    config.desiredServerCount = await chooseInt('Enter the number of server instances:', [1, 2, 3, 4, 6, 8], 1);
+    writeConfig(configFileName, config);
+    header('SERVER MEMORY');
+    print('You can choose the amount of memory for each server instance.');
+    print('The default is 512 MB, which is sufficient for getting started.');
+    print('Note that only certain CPU units are compatible with memory units.');
+    print('Consult AWS Fargate "Task Definition Parameters" for more information.');
+    config.serverMemory = await chooseInt('Enter the server memory (MB):', [512, 1024, 2048, 4096, 8192, 16384], 512);
+    writeConfig(configFileName, config);
+    header('SERVER CPU');
+    print('You can choose the amount of CPU for each server instance.');
+    print('CPU is expressed as an integer using AWS CPU units');
+    print('The default is 256, which is sufficient for getting started.');
+    print('Note that only certain CPU units are compatible with memory units.');
+    print('Consult AWS Fargate "Task Definition Parameters" for more information.');
+    config.serverCpu = await chooseInt('Enter the server CPU:', [256, 512, 1024, 2048, 4096, 8192, 16384], 256);
+    writeConfig(configFileName, config);
+    header('SERVER IMAGE');
+    print('Medplum uses Docker images for the API servers.');
+    print('You can choose the image to use for the servers.');
+    print('Docker images can be loaded from either Docker Hub or AWS ECR.');
+    print('The default is the latest Medplum release.');
+    config.serverImage = await ask('Enter the server image:', 'medplum/medplum-server:latest');
+    writeConfig(configFileName, config);
+    header('SIGNING KEY');
+    print('Medplum uses AWS CloudFront Presigned URLs for binary content such as file uploads.');
+    const { privateKey, publicKey, passphrase } = generateSigningKey();
+    config.storagePublicKey = publicKey;
+    writeConfig(configFileName, config);
+    header('SSL CERTIFICATES');
+    print(`Medplum will now check for existing SSL certificates for the subdomains.`);
+    const allCerts = await listAllCertificates(config.region);
+    print('Found ' + allCerts.length + ' certificate(s).');
+    // Process certificates for each subdomain
+    // Note: The "api" certificate must be created in the same region as the API
+    // Note: The "app" and "storage" certificates must be created in us-east-1
+    for (const { region, certName } of [
+        { region: config.region, certName: 'api' },
+        { region: 'us-east-1', certName: 'app' },
+        { region: 'us-east-1', certName: 'storage' },
+    ]) {
+        print('');
+        const arn = await processCert(config, allCerts, region, certName);
+        config[getDomainCertSetting(certName)] = arn;
+        writeConfig(configFileName, config);
+    }
+    header('AWS PARAMETER STORE');
+    print('Medplum uses AWS Parameter Store to store sensitive configuration values.');
+    print('These values will be encrypted at rest.');
+    print(`The values will be stored in the "/medplum/${config.name}" path.`);
+    const serverParams = {
+        port: config.apiPort,
+        baseUrl: `https://${config.apiDomainName}/`,
+        appBaseUrl: `https://${config.appDomainName}/`,
+        storageBaseUrl: `https://${config.storageDomainName}/binary/`,
+        binaryStorage: `s3:${config.storageBucketName}`,
+        signingKey: privateKey,
+        signingKeyPassphrase: passphrase,
+        supportEmail: supportEmail,
+    };
+    print(JSON.stringify({
+        ...serverParams,
+        signingKey: '****',
+        signingKeyPassphrase: '****',
+    }, null, 2));
+    await checkOk('Do you want to store these values in AWS Parameter Store?');
+    await writeParameters(config.region, `/medplum/${config.name}/`, serverParams);
+    header('DONE!');
+    print('Medplum configuration complete.');
+    print('You can now proceed to deploying the Medplum infrastructure with CDK.');
+    print('Run:');
+    print('');
+    print(`    npx cdk bootstrap -c config=${configFileName}`);
+    print(`    npx cdk synth -c config=${configFileName}`);
+    if (config.region === 'us-east-1') {
+        print(`    npx cdk deploy -c config=${configFileName}`);
+    }
+    else {
+        print(`    npx cdk deploy -c config=${configFileName} --all`);
+    }
+    print('');
+    print('See Medplum documentation for more information:');
+    print('');
+    print('    https://www.medplum.com/docs/self-hosting/install-on-aws');
+    print('');
+}
+/** Prints to stdout. */
+function print(text) {
+    terminal.write(text + '\n');
+}
+/** Prints a header with extra line spacing. */
+function header(text) {
+    print('\n' + text + '\n');
+}
+/** Prints a question and waits for user input. */
+function ask(text, defaultValue = '') {
+    return new Promise((resolve) => {
+        terminal.question(text + (defaultValue ? ' (' + defaultValue + ')' : '') + ' ', (answer) => {
+            resolve(answer || defaultValue.toString());
+        });
+    });
+}
+/** Prints a question and waits for user to choose one of the provided options. */
+async function choose(text, options, defaultValue = '') {
+    const str = text + ' [' + options.map((o) => (o === defaultValue ? '(' + o + ')' : o)).join('|') + ']';
+    // eslint-disable-next-line no-constant-condition
+    while (true) {
+        const answer = (await ask(str)) || defaultValue;
+        if (options.includes(answer)) {
+            return answer;
+        }
+        print('Please choose one of the following options: ' + options.join(', '));
+    }
+}
+/** Prints a question and waits for the user to choose a valid integer option. */
+async function chooseInt(text, options, defaultValue = 0) {
+    return parseInt(await choose(text, options.map((o) => o.toString()), defaultValue.toString()));
+}
+/** Prints a question and waits for the user to choose yes or no. */
+async function yesOrNo(text) {
+    return (await choose(text, ['y', 'n'])).toLowerCase() === 'y';
+}
+/** Prints a question and waits for the user to confirm yes. Throws error on no, and exits the program. */
+async function checkOk(text) {
+    if (!(await yesOrNo(text))) {
+        print('Exiting...');
+        throw new Error('User cancelled');
+    }
+}
+/**
+ * Writes a config file to disk.
+ * @param configFileName The config file name.
+ * @param config The config file contents.
+ */
+function writeConfig(configFileName, config) {
+    fs.writeFileSync(path.resolve(configFileName), JSON.stringify(config, undefined, 2), 'utf-8');
+}
+/**
+ * Returns the current AWS account ID.
+ * This is used as the default value for the "accountNumber" config setting.
+ * @param region The AWS region.
+ * @returns The AWS account ID.
+ */
+async function getAccountId(region) {
+    try {
+        const client = new clientSts.STSClient({ region });
+        const command = new clientSts.GetCallerIdentityCommand({});
+        const response = await client.send(command);
+        return response.Account;
+    }
+    catch (err) {
+        console.log('Warning: Unable to get AWS account ID', err.message);
+        return undefined;
+    }
+}
+/**
+ * Returns a list of all AWS certificates.
+ * This is used to find existing certificates for the subdomains.
+ * If the primary region is not us-east-1, then certificates in us-east-1 will also be returned.
+ * @param region The AWS region.
+ * @returns The list of AWS Certificates.
+ */
+async function listAllCertificates(region) {
+    const result = await listCertificates(region);
+    if (region !== 'us-east-1') {
+        const usEast1Result = await listCertificates('us-east-1');
+        result.push(...usEast1Result);
+    }
+    return result;
+}
+/**
+ * Returns a list of AWS Certificates.
+ * This is used to find existing certificates for the subdomains.
+ * @param region The AWS region.
+ * @returns The list of AWS Certificates.
+ */
+async function listCertificates(region) {
+    try {
+        const client = new clientAcm.ACMClient({ region });
+        const command = new clientAcm.ListCertificatesCommand({ MaxItems: 1000 });
+        const response = await client.send(command);
+        return response.CertificateSummaryList;
+    }
+    catch (err) {
+        console.log('Warning: Unable to list certificates', err.message);
+        return [];
+    }
+}
+/**
+ * Processes a required certificate.
+ *
+ * 1. If the certificate already exists, return the ARN.
+ * 2. If the certificate does not exist, and the user wants to create a new certificate, create it and return the ARN.
+ * 3. If the certificate does not exist, and the user does not want to create a new certificate, return a placeholder.
+ *
+ * @param config In-progress config settings.
+ * @param allCerts List of all existing certificates.
+ * @param region The AWS region where the certificate is needed.
+ * @param certName The name of the certificate (api, app, or storage).
+ * @returns The ARN of the certificate or placeholder if a new certificate is needed.
+ */
+async function processCert(config, allCerts, region, certName) {
+    const domainName = config[getDomainSetting(certName)];
+    const existingCert = allCerts.find((cert) => cert.CertificateArn?.includes(region) && cert.DomainName === domainName);
+    if (existingCert) {
+        print(`Found existing certificate for "${domainName}" in "${region}.`);
+        return existingCert.CertificateArn;
+    }
+    print(`No existing certificate found for "${domainName}" in "${region}.`);
+    if (!(await yesOrNo('Do you want to request a new certificate?'))) {
+        print(`Please add your certificate ARN to the config file in the "${getDomainCertSetting(certName)}" setting.`);
+        return 'TODO';
+    }
+    const arn = await requestCert(region, domainName);
+    print('Certificate ARN: ' + arn);
+    return arn;
+}
+/**
+ * Requests an AWS Certificate.
+ * @param region The AWS region.
+ * @param domain The domain name.
+ * @returns The AWS Certificate ARN on success, or undefined on failure.
+ */
+async function requestCert(region, domain) {
+    try {
+        const validationMethod = await choose('Validate certificate using DNS or email validation?', ['dns', 'email'], 'dns');
+        const client = new clientAcm.ACMClient({ region });
+        const command = new clientAcm.RequestCertificateCommand({
+            DomainName: domain,
+            ValidationMethod: validationMethod.toUpperCase(),
+        });
+        const response = await client.send(command);
+        return response.CertificateArn;
+    }
+    catch (err) {
+        console.log('Error: Unable to request certificate', err.message);
+        return 'TODO';
+    }
+}
+/**
+ * Generates an AWS CloudFront signing key.
+ *
+ * Requirements:
+ *
+ *   1. It must be an SSH-2 RSA key pair.
+ *   2. It must be in base64-encoded PEM format.
+ *   3. It must be a 2048-bit key pair.
+ *
+ * See: https://docs.aws.amazon.com/AmazonCloudFront/latest/DeveloperGuide/private-content-trusted-signers.html#private-content-creating-cloudfront-key-pairs
+ *
+ * @returns A new signing key.
+ */
+function generateSigningKey() {
+    const passphrase = crypto.randomUUID();
+    const signingKey = crypto.generateKeyPairSync('rsa', {
+        modulusLength: 2048,
+        publicKeyEncoding: {
+            type: 'spki',
+            format: 'pem',
+        },
+        privateKeyEncoding: {
+            type: 'pkcs1',
+            format: 'pem',
+            cipher: 'aes-256-cbc',
+            passphrase,
+        },
+    });
+    return {
+        publicKey: signingKey.publicKey,
+        privateKey: signingKey.privateKey,
+        passphrase,
+    };
+}
+/**
+ * Writes a parameter to AWS Parameter Store.
+ * @param region The AWS region.
+ * @param key The parameter key.
+ * @param value The parameter value.
+ */
+async function writeParameter(region, key, value) {
+    const client = new clientSsm.SSMClient({ region });
+    const command = new clientSsm.PutParameterCommand({
+        Name: key,
+        Value: value,
+        Type: 'SecureString',
+        Overwrite: true,
+    });
+    await client.send(command);
+}
+/**
+ * Writes a collection of parameters to AWS Parameter Store.
+ * @param region The AWS region.
+ * @param prefix The AWS Parameter Store prefix.
+ * @param params The parameters to write.
+ */
+async function writeParameters(region, prefix, params) {
+    for (const [key, value] of Object.entries(params)) {
+        const valueStr = value.toString();
+        if (valueStr) {
+            await writeParameter(region, prefix + key, valueStr);
+        }
+    }
+}
+
 const aws = new commander.Command('aws').description('Commands to manage AWS resources');
+aws.command('init').description('Initialize a new Medplum AWS CloudFormation stacks').action(initStackCommand);
 aws.command('list').description('List Medplum AWS CloudFormation stacks').action(listStacksCommand);
 aws
     .command('describe')
@@ -649,6 +1086,66 @@ createBotDeprecate
     await createBot(exports.medplum, [botName, projectId, sourceFile, distFile]);
 });
 
+const bulk = new commander.Command('bulk');
+bulk
+    .command('export')
+    .option('-e, --exportLevel <exportLevel>', 'Optional export level. Defaults to system level export. "Group/:id" - Group of Patients, "Patient" - All Patients.')
+    .option('-t, --types <types>', 'optional resource types to export')
+    .option('-s, --since <since>', 'optional Resources will be included in the response if their state has changed after the supplied time (e.g. if Resource.meta.lastUpdated is later than the supplied _since time).')
+    .action(async ({ exportLevel, types, since }) => {
+    const response = await exports.medplum.bulkExport(exportLevel, types, since);
+    response.output?.forEach(async ({ type, url }) => {
+        const data = await exports.medplum.download(url);
+        const fileName = `${type}.ndjson`;
+        fs.writeFile(`${fileName}`, await data.text(), () => {
+            console.log(`${fileName} is created`);
+        });
+    });
+});
+bulk
+    .command('import')
+    .argument('<filename>', 'File Name')
+    .option('--numResourcesPerRequest <numResourcesPerRequest>', 'optional number of resources to import per batch request. Defaults to 25.', '25')
+    .action(async (fileName, options) => {
+    const path$1 = path.resolve(process.cwd(), fileName);
+    const { numResourcesPerRequest } = options;
+    await importFile(path$1, parseInt(numResourcesPerRequest));
+});
+async function importFile(path, numResourcesPerRequest) {
+    let entries = [];
+    const fileStream = fs.createReadStream(path);
+    const rl = readline.createInterface({
+        input: fileStream,
+    });
+    for await (const line of rl) {
+        const resource = JSON.parse(line);
+        entries.push({
+            resource: resource,
+            request: {
+                method: 'POST',
+                url: resource.resourceType,
+            },
+        });
+        if (entries.length % numResourcesPerRequest === 0) {
+            await sendBatchEntries(entries);
+            entries = [];
+        }
+    }
+    if (entries.length > 0) {
+        await sendBatchEntries(entries);
+    }
+}
+async function sendBatchEntries(entries) {
+    const result = await exports.medplum.executeBatch({
+        resourceType: 'Bundle',
+        type: 'transaction',
+        entry: entries,
+    });
+    result.entry?.forEach((resultEntry) => {
+        prettyPrint(resultEntry.response);
+    });
+}
+
 const project = new commander.Command('project');
 project
     .command('list')
@@ -841,6 +1338,8 @@ async function main(medplumClient, argv) {
         index.addCommand(deleteObject);
         // Project
         index.addCommand(project);
+        // Export
+        index.addCommand(bulk);
         // Bot Commands
         index.addCommand(bot);
         // Deprecated Bot Commands
@@ -855,20 +1354,30 @@ async function main(medplumClient, argv) {
         console.error('Error: ' + core.normalizeErrorString(err));
     }
 }
-if (require.main === module) {
+function run() {
     dotenv.config();
     const baseUrl = process.env['MEDPLUM_BASE_URL'] || 'https://api.medplum.com/';
+    const fhirUrlPath = process.env['MEDPLUM_FHIR_URL_PATH'] || '';
+    const accessToken = process.env['MEDPLUM_CLIENT_ACCESS_TOKEN'] || '';
     const medplumClient = new core.MedplumClient({
         fetch,
         baseUrl,
+        fhirUrlPath,
         storage: new FileSystemStorage(),
         onUnauthenticated: onUnauthenticated,
     });
+    if (accessToken) {
+        medplumClient.setAccessToken(accessToken);
+    }
     main(medplumClient, process.argv).catch((err) => console.error('Unhandled error:', err));
 }
+if (require.main === module) {
+    run();
+}
 function onUnauthenticated() {
     console.log('Unauthenticated: run `npx medplum login` to sign in');
 }
 
 exports.main = main;
+exports.run = run;
 //# sourceMappingURL=index.cjs.map

package/dist/cjs/index.cjs.map

@@ -1 +1 @@
-{"version":3,"file":"index.cjs","sources":["../../../src/auth.ts","../../../src/aws/utils.ts","../../../src/aws/describe.ts","../../../src/aws/list.ts","../../../src/utils.ts","../../../src/aws/update-app.ts","../../../src/aws/update-server.ts","../../../src/aws/index.ts","../../../src/bots.ts","../../../src/project.ts","../../../src/rest.ts","../../../src/storage.ts","../../../src/index.ts"],"sourcesContent":["import { Command } from 'commander';\nimport { medplum } from '.';\nimport { MedplumClient, getDisplayString, normalizeErrorString } from '@medplum/core';\nimport { platform } from 'os';\nimport { exec } from 'child_process';\nimport { createServer } from 'http';\n\nconst clientId = 'medplum-cli';\nconst redirectUri = 'http://localhost:9615';\n\nexport const login = new Command('login');\nexport const whoami = new Command('whoami');\n\nlogin.action(async () => {\n  await startLogin(medplum);\n});\n\nwhoami.action(() => {\n  printMe(medplum);\n});\n\nasync function startLogin(medplum: MedplumClient): Promise<void> {\n  await startWebServer(medplum);\n\n  const loginUrl = new URL('/oauth2/authorize', medplum.getBaseUrl());\n  loginUrl.searchParams.set('client_id', clientId);\n  loginUrl.searchParams.set('redirect_uri', redirectUri);\n  loginUrl.searchParams.set('scope', 'openid');\n  loginUrl.searchParams.set('response_type', 'code');\n  loginUrl.searchParams.set('prompt', 'login');\n  await openBrowser(loginUrl.toString());\n}\n\nasync function startWebServer(medplum: MedplumClient): Promise<void> {\n  const server = createServer(async (req, res) => {\n    const url = new URL(req.url as string, 'http://localhost:9615');\n    const code = url.searchParams.get('code');\n    if (url.pathname === '/' && code) {\n      try {\n        const profile = await medplum.processCode(code, { clientId, redirectUri });\n        res.writeHead(200, { 'Content-Type': 'text/plain' });\n        res.end(`Signed in as ${getDisplayString(profile)}. You may close this window.`);\n      } catch (err) {\n        res.writeHead(400, { 'Content-Type': 'text/plain' });\n        res.end(`Error: ${normalizeErrorString(err)}`);\n      } finally {\n        server.close();\n      }\n    } else {\n      res.writeHead(404, { 'Content-Type': 'text/plain' });\n      res.end('Not found');\n    }\n  }).listen(9615);\n}\n\n/**\n * Opens a web browser to the specified URL.\n * See: https://hasinthaindrajee.medium.com/browser-sso-for-cli-applications-b0be743fa656\n * @param url The URL to open.\n */\nasync function openBrowser(url: string): Promise<void> {\n  const os = platform();\n  let cmd = undefined;\n  switch (os) {\n    case 'openbsd':\n    case 'linux':\n      cmd = `xdg-open '${url}'`;\n      break;\n    case 'darwin':\n      cmd = `open '${url}'`;\n      break;\n    case 'win32':\n      cmd = `cmd /c start \"\" \"${url}\"`;\n      break;\n    default:\n      throw new Error('Unsupported platform: ' + os);\n  }\n  exec(cmd);\n}\n\n/**\n * Prints the current user and project.\n * @param medplum The Medplum client.\n */\nfunction printMe(medplum: MedplumClient): void {\n  const loginState = medplum.getActiveLogin();\n  if (loginState) {\n    console.log(`Server:  ${medplum.getBaseUrl()}`);\n    console.log(`Profile: ${loginState.profile?.display} (${loginState.profile?.reference})`);\n    console.log(`Project: ${loginState.project?.display} (${loginState.project?.reference})`);\n  } else {\n    console.log('Not logged in');\n  }\n}\n","import {\n  CloudFormationClient,\n  DescribeStackResourcesCommand,\n  DescribeStacksCommand,\n  ListStacksCommand,\n  Stack,\n  StackResource,\n  StackSummary,\n} from '@aws-sdk/client-cloudformation';\nimport { CloudFrontClient } from '@aws-sdk/client-cloudfront';\nimport { ECSClient } from '@aws-sdk/client-ecs';\nimport { S3Client } from '@aws-sdk/client-s3';\n\nexport interface MedplumStackDetails {\n  stack: Stack;\n  tag: string;\n  ecsCluster?: StackResource;\n  ecsService?: StackResource;\n  appBucket?: StackResource;\n  appDistribution?: StackResource;\n  storageBucket?: StackResource;\n}\n\nexport const cloudFormationClient = new CloudFormationClient({});\nexport const cloudFrontClient = new CloudFrontClient({});\nexport const ecsClient = new ECSClient({});\nexport const s3Client = new S3Client({});\nexport const tagKey = 'medplum:environment';\n\n/**\n * Returns a list of all AWS CloudFormation stacks (both Medplum and non-Medplum).\n * @returns List of AWS CloudFormation stacks.\n */\nexport async function getAllStacks(): Promise<(StackSummary & { StackName: string })[]> {\n  const listResult = await cloudFormationClient.send(new ListStacksCommand({}));\n  return (\n    (listResult.StackSummaries?.filter((s) => s.StackName && s.StackStatus !== 'DELETE_COMPLETE') as (StackSummary & {\n      StackName: string;\n    })[]) || []\n  );\n}\n\n/**\n * Returns Medplum stack details for the given tag.\n * @param tag The Medplum stack tag.\n * @returns The Medplum stack details.\n */\nexport async function getStackByTag(tag: string): Promise<MedplumStackDetails | undefined> {\n  const stackSummaries = await getAllStacks();\n  for (const stackSummary of stackSummaries) {\n    const stackName = stackSummary.StackName;\n    const details = await getStackDetails(stackName);\n    if (details?.tag === tag) {\n      return details;\n    }\n  }\n  return undefined;\n}\n\n/**\n * Returns Medplum stack details for the given stack name.\n * @param stackName The CloudFormation stack name.\n * @returns The Medplum stack details.\n */\nexport async function getStackDetails(stackName: string): Promise<MedplumStackDetails | undefined> {\n  const describeStacksCommand = new DescribeStacksCommand({ StackName: stackName });\n  const stackDetails = await cloudFormationClient.send(describeStacksCommand);\n  const stack = stackDetails?.Stacks?.[0];\n  const medplumTag = stack?.Tags?.find((tag) => tag.Key === tagKey);\n  if (!medplumTag) {\n    return undefined;\n  }\n\n  const stackResources = await cloudFormationClient.send(new DescribeStackResourcesCommand({ StackName: stackName }));\n  if (!stackResources.StackResources) {\n    return undefined;\n  }\n\n  const result: MedplumStackDetails = {\n    stack: stack as Stack,\n    tag: medplumTag.Value as string,\n  };\n\n  for (const resource of stackResources.StackResources) {\n    if (resource.ResourceType === 'AWS::ECS::Cluster') {\n      result.ecsCluster = resource;\n    } else if (resource.ResourceType === 'AWS::ECS::Service') {\n      result.ecsService = resource;\n    } else if (\n      resource.ResourceType === 'AWS::S3::Bucket' &&\n      resource.LogicalResourceId?.startsWith('FrontEndAppBucket')\n    ) {\n      result.appBucket = resource;\n    } else if (\n      resource.ResourceType === 'AWS::S3::Bucket' &&\n      resource.LogicalResourceId?.startsWith('StorageStorageBucket')\n    ) {\n      result.storageBucket = resource;\n    } else if (\n      resource.ResourceType === 'AWS::CloudFront::Distribution' &&\n      resource.LogicalResourceId?.startsWith('FrontEndAppDistribution')\n    ) {\n      result.appDistribution = resource;\n    }\n  }\n\n  return result;\n}\n\n/**\n * Prints the given Medplum stack details to stdout.\n * @param details The Medplum stack details.\n */\nexport function printStackDetails(details: MedplumStackDetails): void {\n  console.log(`Medplum Tag:     ${details.tag}`);\n  console.log(`Stack Name:      ${details.stack.StackName}`);\n  console.log(`Stack ID:        ${details.stack.StackId}`);\n  console.log(`Status:          ${details.stack.StackStatus}`);\n  console.log(`ECS Cluster:     ${details.ecsCluster?.PhysicalResourceId}`);\n  console.log(`ECS Service:     ${getEcsServiceName(details.ecsService)}`);\n  console.log(`App Bucket:      ${details.appBucket?.PhysicalResourceId}`);\n  console.log(`Storage Bucket:  ${details.storageBucket?.PhysicalResourceId}`);\n}\n\n/**\n * Parses the ECS service name from the given AWS ECS service resource.\n * @param resource The AWS ECS service resource.\n * @returns The ECS service name.\n */\nexport function getEcsServiceName(resource: StackResource | undefined): string | undefined {\n  return resource?.PhysicalResourceId?.split('/')?.pop() || '';\n}\n","import { getStackByTag, printStackDetails } from './utils';\n\n/**\n * The AWS \"describe\" command prints details about a Medplum CloudFormation stack.\n *\n * @param tag The Medplum stack tag.\n */\nexport async function describeStacksCommand(tag: string): Promise<void> {\n  const details = await getStackByTag(tag);\n  if (!details) {\n    console.log('Stack not found');\n    return;\n  }\n  printStackDetails(details);\n}\n","import { getAllStacks, getStackDetails, printStackDetails } from './utils';\n\n/**\n * The AWS \"list\" command prints summary details about all Medplum CloudFormation stacks.\n */\nexport async function listStacksCommand(): Promise<void> {\n  const stackSummaries = await getAllStacks();\n  for (const stackSummary of stackSummaries) {\n    const stackName = stackSummary.StackName;\n    const details = await getStackDetails(stackName);\n    if (!details) {\n      continue;\n    }\n    printStackDetails(details);\n    console.log('');\n  }\n}\n","import { MedplumClient } from '@medplum/core';\nimport { Bot, OperationOutcome } from '@medplum/fhirtypes';\nimport { existsSync, readFileSync, writeFile } from 'fs';\nimport { resolve } from 'path';\nimport internal from 'stream';\nimport tar from 'tar';\n\ninterface MedplumConfig {\n  readonly baseUrl?: string;\n  readonly clientId?: string;\n  readonly googleClientId?: string;\n  readonly recaptchaSiteKey?: string;\n  readonly registerEnabled?: boolean;\n  readonly bots?: MedplumBotConfig[];\n}\n\ninterface MedplumBotConfig {\n  readonly name: string;\n  readonly id: string;\n  readonly source: string;\n  readonly dist?: string;\n}\n\nexport function prettyPrint(input: unknown): void {\n  console.log(JSON.stringify(input, null, 2));\n}\n\nexport async function saveBot(medplum: MedplumClient, botConfig: MedplumBotConfig, bot: Bot): Promise<void> {\n  const code = readFileContents(botConfig.source);\n  if (!code) {\n    return;\n  }\n\n  try {\n    console.log('Update bot code.....');\n    const updateResult = await medplum.updateResource({\n      ...bot,\n      code,\n    });\n    if (!updateResult) {\n      console.log('Bot not modified');\n    } else {\n      console.log('Success! New bot version: ' + updateResult.meta?.versionId);\n    }\n  } catch (err) {\n    console.log('Update error: ', err);\n  }\n}\n\nexport async function deployBot(medplum: MedplumClient, botConfig: MedplumBotConfig, bot: Bot): Promise<void> {\n  const code = readFileContents(botConfig.dist ?? botConfig.source);\n  if (!code) {\n    return;\n  }\n\n  try {\n    console.log('Deploying bot...');\n    const deployResult = (await medplum.post(medplum.fhirUrl('Bot', bot.id as string, '$deploy'), {\n      code,\n    })) as OperationOutcome;\n    console.log('Deploy result: ' + deployResult.issue?.[0]?.details?.text);\n  } catch (err) {\n    console.log('Deploy error: ', err);\n  }\n}\n\nexport async function createBot(medplum: MedplumClient, argv: string[]): Promise<void> {\n  if (argv.length < 4) {\n    console.log(`Error: command needs to be npx medplum <new-bot-name> <project-id> <source-file> <dist-file>`);\n    return;\n  }\n  const botName = argv[0];\n  const projectId = argv[1];\n  const sourceFile = argv[2];\n  const distFile = argv[3];\n\n  try {\n    const body = {\n      name: botName,\n      description: '',\n    };\n    const newBot = await medplum.post('admin/projects/' + projectId + '/bot', body);\n    const bot = await medplum.readResource('Bot', newBot.id);\n\n    const botConfig = {\n      name: botName,\n      id: newBot.id,\n      source: sourceFile,\n      dist: distFile,\n    };\n    await saveBot(medplum, botConfig as MedplumBotConfig, bot);\n    console.log(`Success! Bot created: ${bot.id}`);\n\n    addBotToConfig(botConfig);\n  } catch (err) {\n    console.log('Error while creating new bot: ' + err);\n  }\n}\n\nexport function readBotConfigs(botName: string): MedplumBotConfig[] {\n  const regExBotName = new RegExp('^' + escapeRegex(botName).replace(/\\\\\\*/g, '.*') + '$');\n  const botConfigs = readConfig()?.bots?.filter((b) => regExBotName.test(b.name));\n  if (!botConfigs) {\n    return [];\n  }\n  return botConfigs;\n}\n\nexport function readConfig(tagName?: string): MedplumConfig | undefined {\n  const fileName = tagName ? `medplum.${tagName}.config.json` : 'medplum.config.json';\n  const content = readFileContents(fileName);\n  if (!content) {\n    return undefined;\n  }\n  return JSON.parse(content);\n}\n\nfunction readFileContents(fileName: string): string | undefined {\n  const path = resolve(process.cwd(), fileName);\n  if (!existsSync(path)) {\n    console.log('Error: File does not exist: ' + path);\n    return '';\n  }\n  return readFileSync(path, 'utf8');\n}\n\nfunction addBotToConfig(botConfig: MedplumBotConfig): void {\n  const config = readConfig();\n  config?.bots?.push(botConfig);\n  writeFile('medplum.config.json', JSON.stringify(config), () => {\n    console.log(`Bot added to config: ${botConfig.id}`);\n  });\n}\n\nfunction escapeRegex(str: string): string {\n  return str.replace(/[/\\-\\\\^$*+?.()|[\\]{}]/g, '\\\\$&');\n}\n\n/**\n * Creates a safe tar extractor that limits the number of files and total size.\n *\n * Expanding archive files without controlling resource consumption is security-sensitive\n *\n * See: https://sonarcloud.io/organizations/medplum/rules?open=typescript%3AS5042&rule_key=typescript%3AS5042\n *\n * @param destinationDir The destination directory where all files will be extracted.\n * @returns A tar file extractor.\n */\nexport function safeTarExtractor(destinationDir: string): internal.Writable {\n  const MAX_FILES = 100;\n  const MAX_SIZE = 10 * 1024 * 1024; // 10 MB\n\n  let fileCount = 0;\n  let totalSize = 0;\n\n  return tar.x({\n    cwd: destinationDir,\n    filter: (_path, entry) => {\n      fileCount++;\n      if (fileCount > MAX_FILES) {\n        throw new Error('Tar extractor reached max number of files');\n      }\n\n      totalSize += entry.size;\n      if (totalSize > MAX_SIZE) {\n        throw new Error('Tar extractor reached max size');\n      }\n\n      return true;\n    },\n  });\n}\n","import { CreateInvalidationCommand } from '@aws-sdk/client-cloudfront';\nimport { PutObjectCommand } from '@aws-sdk/client-s3';\nimport fastGlob from 'fast-glob';\nimport { createReadStream, mkdtempSync, readFileSync, readdirSync, rmSync, writeFileSync } from 'fs';\nimport fetch from 'node-fetch';\nimport { tmpdir } from 'os';\nimport { join, sep } from 'path';\nimport { pipeline } from 'stream/promises';\nimport { readConfig, safeTarExtractor } from '../utils';\nimport { cloudFrontClient, getStackByTag, s3Client } from './utils';\n\n/**\n * The AWS \"update-app\" command updates the Medplum app in a Medplum CloudFormation stack to the latest version.\n * @param tag The Medplum stack tag.\n */\nexport async function updateAppCommand(tag: string): Promise<void> {\n  const config = readConfig(tag);\n  if (!config) {\n    console.log('Config not found');\n    return;\n  }\n  const details = await getStackByTag(tag);\n  if (!details) {\n    console.log('Stack not found');\n    return;\n  }\n  const appBucket = details.appBucket;\n  if (!appBucket) {\n    console.log('App bucket not found');\n    return;\n  }\n\n  const tmpDir = await downloadNpmPackage('@medplum/app', 'latest');\n\n  // Replace variables in the app\n  replaceVariables(tmpDir, {\n    MEDPLUM_BASE_URL: config.baseUrl as string,\n    MEDPLUM_CLIENT_ID: config.clientId || '',\n    GOOGLE_CLIENT_ID: config.googleClientId || '',\n    RECAPTCHA_SITE_KEY: config.recaptchaSiteKey || '',\n    MEDPLUM_REGISTER_ENABLED: config.registerEnabled ? 'true' : 'false',\n  });\n\n  // Upload the app to S3 with correct content-type and cache-control\n  await uploadAppToS3(tmpDir, appBucket.PhysicalResourceId as string);\n\n  // Create a CloudFront invalidation to clear any cached resources\n  if (details.appDistribution?.PhysicalResourceId) {\n    await createInvalidation(details.appDistribution.PhysicalResourceId);\n  }\n\n  console.log('Done');\n}\n\n/**\n * Returns NPM package metadata for a given package name.\n * See: https://github.com/npm/registry/blob/master/docs/REGISTRY-API.md#getpackageversion\n * @param packageName The npm package name.\n */\nasync function getNpmPackageMetadata(packageName: string, version: string): Promise<any> {\n  const url = `https://registry.npmjs.org/${packageName}/${version}`;\n  const response = await fetch(url);\n  return response.json();\n}\n\n/**\n * Downloads and extracts an NPM package.\n * @param packageName The NPM package name.\n * @param version The NPM package version or \"latest\".\n * @returns Path to temporary directory where the package was downloaded and extracted.\n */\nasync function downloadNpmPackage(packageName: string, version: string): Promise<string> {\n  const packageMetadata = await getNpmPackageMetadata(packageName, version);\n  const tarballUrl = packageMetadata.dist.tarball as string;\n  const tmpDir = mkdtempSync(join(tmpdir(), 'tarball-'));\n  try {\n    const response = await fetch(tarballUrl);\n    const extractor = safeTarExtractor(tmpDir);\n    await pipeline(response.body, extractor);\n    return join(tmpDir, 'package', 'dist');\n  } catch (error) {\n    rmSync(tmpDir, { recursive: true, force: true });\n    throw error;\n  }\n}\n\n/**\n * Replaces variables in all JS files in the given folder.\n * @param folderName The folder name of the files.\n * @param replacements The collection of variable placeholders and replacements.\n */\nfunction replaceVariables(folderName: string, replacements: Record<string, string>): void {\n  for (const item of readdirSync(folderName, { withFileTypes: true })) {\n    const itemPath = join(folderName, item.name);\n    if (item.isDirectory()) {\n      replaceVariables(itemPath, replacements);\n    } else if (item.isFile() && itemPath.endsWith('.js')) {\n      replaceVariablesInFile(itemPath, replacements);\n    }\n  }\n}\n\n/**\n * Replaces variables in the JS file.\n * @param fileName The file name.\n * @param replacements The collection of variable placeholders and replacements.\n */\nfunction replaceVariablesInFile(fileName: string, replacements: Record<string, string>): void {\n  let contents = readFileSync(fileName, 'utf-8');\n  for (const [placeholder, replacement] of Object.entries(replacements)) {\n    contents = contents.replaceAll(`process.env.${placeholder}`, `'${replacement}'`);\n  }\n  writeFileSync(fileName, contents);\n}\n\n/**\n * Uploads the app to S3.\n * Ensures correct content-type and cache-control for each file.\n * @param tmpDir The temporary directory where the app is located.\n * @param bucketName The destination S3 bucket name.\n */\nasync function uploadAppToS3(tmpDir: string, bucketName: string): Promise<void> {\n  // Manually iterate and upload files\n  // Automatic content-type detection is not reliable on Microsoft Windows\n  // So we explicitly set content-type\n  const uploadPatterns: [string, string, boolean][] = [\n    // Cached\n    // These files generally have a hash, so they can be cached forever\n    // It is important to upload them first to avoid broken references from index.html\n    ['css/**/*.css', 'text/css', true],\n    ['css/**/*.css.map', 'application/json', true],\n    ['img/**/*.png', 'image/png', true],\n    ['img/**/*.svg', 'image/svg+xml', true],\n    ['js/**/*.js', 'application/javascript', true],\n    ['js/**/*.js.map', 'application/json', true],\n    ['js/**/*.txt', 'text/plain', true],\n    ['favicon.ico', 'image/vnd.microsoft.icon', true],\n    ['robots.txt', 'text/plain', true],\n    ['workbox-*.js', 'application/javascript', true],\n    ['workbox-*.js.map', 'application/json', true],\n\n    // Not cached\n    ['manifest.webmanifest', 'application/manifest+json', false],\n    ['service-worker.js', 'application/javascript', false],\n    ['service-worker.js.map', 'application/json', false],\n    ['index.html', 'text/html', false],\n  ];\n  for (const uploadPattern of uploadPatterns) {\n    await uploadFolderToS3({\n      rootDir: tmpDir,\n      bucketName,\n      fileNamePattern: uploadPattern[0],\n      contentType: uploadPattern[1],\n      cached: uploadPattern[2],\n    });\n  }\n}\n\n/**\n * Uploads a directory of files to S3.\n * @param options The upload options such as bucket name, content type, and cache control.\n */\nasync function uploadFolderToS3(options: {\n  rootDir: string;\n  bucketName: string;\n  fileNamePattern: string;\n  contentType: string;\n  cached: boolean;\n}): Promise<void> {\n  const items = fastGlob.sync(options.fileNamePattern, { cwd: options.rootDir });\n  for (const item of items) {\n    await uploadFileToS3(join(options.rootDir, item), options);\n  }\n}\n\n/**\n * Uploads a file to S3.\n * @param filePath The file path.\n * @param options The upload options such as bucket name, content type, and cache control.\n */\nasync function uploadFileToS3(\n  filePath: string,\n  options: {\n    rootDir: string;\n    bucketName: string;\n    contentType: string;\n    cached: boolean;\n  }\n): Promise<void> {\n  const fileStream = createReadStream(filePath);\n  const s3Key = filePath\n    .substring(options.rootDir.length + 1)\n    .split(sep)\n    .join('/');\n\n  const putObjectParams = {\n    Bucket: options.bucketName,\n    Key: s3Key,\n    Body: fileStream,\n    ContentType: options.contentType,\n    CacheControl: options.cached ? 'public, max-age=31536000' : 'no-cache, no-store, must-revalidate',\n  };\n\n  console.log(`Uploading ${s3Key} to ${options.bucketName}...`);\n  await s3Client.send(new PutObjectCommand(putObjectParams));\n}\n\n/**\n * Creates a CloudFront invalidation to clear the cache for all files.\n * This is not strictly necessary, but it helps to ensure that the latest version of the app is served.\n * In a perfect world, every deploy is clean, and hashed resources should be cached forever.\n * However, we do not recalculate hashes after variable replacements.\n * So if variables change, we need to invalidate the cache.\n * @param distributionId The CloudFront distribution ID.\n */\nasync function createInvalidation(distributionId: string): Promise<void> {\n  const response = await cloudFrontClient.send(\n    new CreateInvalidationCommand({\n      DistributionId: distributionId,\n      InvalidationBatch: {\n        CallerReference: `invalidate-all-${Date.now()}`,\n        Paths: {\n          Quantity: 1,\n          Items: ['/*'],\n        },\n      },\n    })\n  );\n  console.log(`Created invalidation with ID: ${response.Invalidation?.Id}`);\n}\n","import { UpdateServiceCommand } from '@aws-sdk/client-ecs';\nimport { ecsClient, getEcsServiceName, getStackByTag } from './utils';\n\n/**\n * The AWS \"update-server\" command updates the Medplum server in a Medplum CloudFormation stack.\n * @param tag The Medplum stack tag.\n * @returns\n */\nexport async function updateServerCommand(tag: string): Promise<void> {\n  const details = await getStackByTag(tag);\n  if (!details) {\n    console.log('Stack not found');\n    return;\n  }\n  const ecsCluster = details.ecsCluster?.PhysicalResourceId;\n  if (!ecsCluster) {\n    console.log('ECS Cluster not found');\n    return;\n  }\n  const ecsService = getEcsServiceName(details.ecsService);\n  if (!ecsService) {\n    console.log('ECS Service not found');\n    return;\n  }\n  await ecsClient.send(\n    new UpdateServiceCommand({\n      cluster: ecsCluster,\n      service: ecsService,\n      forceNewDeployment: true,\n    })\n  );\n  console.log(`Service \"${ecsService}\" updated successfully.`);\n}\n","import { Command } from 'commander';\nimport { describeStacksCommand } from './describe';\nimport { listStacksCommand } from './list';\nimport { updateAppCommand } from './update-app';\nimport { updateServerCommand } from './update-server';\n\nexport const aws = new Command('aws').description('Commands to manage AWS resources');\n\naws.command('list').description('List Medplum AWS CloudFormation stacks').action(listStacksCommand);\n\naws\n  .command('describe')\n  .description('Describe a Medplum AWS CloudFormation stack by tag')\n  .argument('<tag>')\n  .action(describeStacksCommand);\n\naws.command('update-server').description('Update the server image').argument('<tag>').action(updateServerCommand);\n\naws.command('update-app').description('Update the app site').argument('<tag>').action(updateAppCommand);\n","import { Command } from 'commander';\nimport { medplum } from '.';\nimport { createBot, deployBot, readBotConfigs, saveBot } from './utils';\nimport { MedplumClient } from '@medplum/core';\n\nexport const bot = new Command('bot');\n\n// Commands to deprecate\nexport const saveBotDeprecate = new Command('save-bot');\nexport const deployBotDeprecate = new Command('deploy-bot');\nexport const createBotDeprecate = new Command('create-bot');\n\nbot\n  .command('save')\n  .description('Saving the bot')\n  .argument('<botName>')\n  .action(async (botName) => {\n    await botWrapper(medplum, botName);\n  });\n\nbot\n  .command('deploy')\n  .description('Deploy the app to AWS')\n  .argument('<botName>')\n  .action(async (botName) => {\n    await botWrapper(medplum, botName, true);\n  });\n\nbot\n  .command('create')\n  .arguments('<botName> <projectId> <sourceFile> <distFile>')\n  .description('Creating a bot')\n  .action(async (botName, projectId, sourceFile, distFile) => {\n    await createBot(medplum, [botName, projectId, sourceFile, distFile]);\n  });\n\nexport async function botWrapper(medplum: MedplumClient, botName: string, deploy = false): Promise<void> {\n  const botConfigs = readBotConfigs(botName);\n  for (const botConfig of botConfigs) {\n    const bot = await medplum.readResource('Bot', botConfig.id);\n    await saveBot(medplum, botConfig, bot);\n    if (deploy) {\n      await deployBot(medplum, botConfig, bot);\n    }\n  }\n  console.log(`Number of bots deployed: ${botConfigs.length}`);\n}\n\n// Deprecate bot commands\nsaveBotDeprecate\n  .description('Saves the bot')\n  .argument('<botName>')\n  .action(async (botName) => {\n    await botWrapper(medplum, botName);\n  });\n\ndeployBotDeprecate\n  .description('Deploy the bot to AWS')\n  .argument('<botName>')\n  .action(async (botName) => {\n    await botWrapper(medplum, botName, true);\n  });\n\ncreateBotDeprecate\n  .arguments('<botName> <projectId> <sourceFile> <distFile>')\n  .description('Creates and saves the bot')\n  .action(async (botName, projectId, sourceFile, distFile) => {\n    await createBot(medplum, [botName, projectId, sourceFile, distFile]);\n  });\n","import { Command, Option } from 'commander';\nimport { medplum } from '.';\nimport { MedplumClient, LoginState, InviteBody } from '@medplum/core';\n\nexport const project = new Command('project');\n\nproject\n  .command('list')\n  .description('List of current projects')\n  .action(async () => {\n    projectList(medplum);\n  });\n\nfunction projectList(medplum: MedplumClient): void {\n  const logins = medplum.getLogins();\n\n  const projects = logins\n    .map((login: LoginState) => `${login.project.display} (${login.project.reference})`)\n    .join('\\n\\n');\n\n  console.log(projects);\n}\n\nproject\n  .command('current')\n  .description('Project you are currently on')\n  .action(() => {\n    const login = medplum.getActiveLogin();\n    if (!login) {\n      throw new Error('Unauthenticated: run `npx medplum login` to login');\n    }\n    console.log(`${login.project.display} (${login.project.reference})`);\n  });\n\nproject\n  .command('switch')\n  .description('Switching to another project from the current one')\n  .argument('<projectId>')\n  .action(async (projectId) => {\n    await switchProject(medplum, projectId);\n  });\n\nproject\n  .command('invite')\n  .description('Invite a member to your current project (run npx medplum project current to confirm)')\n  .arguments('<firstName> <lastName> <email>')\n  .option('--send-email', 'If you want to send the email when inviting the user')\n  .option('--admin', 'If the user you are inviting is an admin')\n  .addOption(\n    new Option('-r, --role <role>', 'Role of user')\n      .choices(['Practitioner', 'Patient', 'RelatedPerson'])\n      .default('Practitioner')\n  )\n  .action(async (firstName, lastName, email, options) => {\n    const login = medplum.getActiveLogin();\n    if (!login) {\n      throw new Error('Unauthenticated: run `npx medplum login` to login');\n    }\n    if (!login.project?.reference) {\n      throw new Error('No current project to invite user to');\n    }\n\n    const projectId = login.project.reference.split('/')[1];\n    const inviteBody: InviteBody = {\n      resourceType: options.role,\n      firstName,\n      lastName,\n      email,\n      sendEmail: !!options.sendEmail,\n      admin: !!options.admin,\n    };\n    await inviteUser(projectId, inviteBody);\n  });\n\nasync function switchProject(medplum: MedplumClient, projectId: string): Promise<void> {\n  const logins = medplum.getLogins();\n  const login = logins.find((login: LoginState) => login.project?.reference?.includes(projectId));\n  if (!login) {\n    console.log(`Error: project ${projectId} not found. Make sure you are added as a user to this project`);\n  } else {\n    await medplum.setActiveLogin(login);\n    console.log(`Switched to project ${projectId}\\n`);\n  }\n}\n\nasync function inviteUser(projectId: string, inviteBody: InviteBody): Promise<void> {\n  try {\n    await medplum.invite(projectId, inviteBody);\n    if (inviteBody.sendEmail) {\n      console.log('Email sent');\n    }\n    console.log('See your users at https://app.medplum.com/admin/users');\n  } catch (err) {\n    console.log('Error while sending invite ' + err);\n  }\n}\n","import { convertToTransactionBundle } from '@medplum/core';\nimport { Command } from 'commander';\nimport { medplum } from '.';\nimport { prettyPrint } from './utils';\n\nexport const deleteObject = new Command('delete');\nexport const get = new Command('get');\nexport const patch = new Command('patch');\nexport const post = new Command('post');\nexport const put = new Command('put');\n\ndeleteObject.argument('<url>', 'Resource/$id').action(async (url) => {\n  prettyPrint(await medplum.delete(cleanUrl(url)));\n});\n\nget\n  .argument('<url>', 'Resource/$id')\n  .option('--as-transaction', 'Print out the bundle as a transaction type')\n  .action(async (url, options) => {\n    const response = await medplum.get(cleanUrl(url));\n    if (options.asTransaction) {\n      prettyPrint(convertToTransactionBundle(response));\n    } else {\n      prettyPrint(response);\n    }\n  });\n\npatch.arguments('<url> <body>').action(async (url, body) => {\n  prettyPrint(await medplum.patch(cleanUrl(url), parseBody(body)));\n});\n\npost.arguments('<url> <body>').action(async (url, body) => {\n  prettyPrint(await medplum.post(cleanUrl(url), parseBody(body)));\n});\n\nput.arguments('<url> <body>').action(async (url, body) => {\n  prettyPrint(await medplum.put(cleanUrl(url), parseBody(body)));\n});\n\nfunction parseBody(input: string | undefined): any {\n  if (!input) {\n    return undefined;\n  }\n  try {\n    return JSON.parse(input);\n  } catch (err) {\n    return input;\n  }\n}\n\nexport function cleanUrl(input: string): string {\n  const knownPrefixes = ['admin/', 'auth/', 'fhir/R4'];\n  if (knownPrefixes.some((p) => input.startsWith(p))) {\n    // If the URL starts with a known prefix, return it as-is\n    return input;\n  }\n  // Otherwise, default to FHIR\n  return 'fhir/R4/' + input;\n}\n","import { ClientStorage } from '@medplum/core';\nimport { existsSync, mkdirSync, readFileSync, writeFileSync } from 'fs';\nimport { homedir } from 'os';\nimport { resolve } from 'path';\n\nexport class FileSystemStorage extends ClientStorage {\n  private readonly dirName: string;\n  private readonly fileName: string;\n\n  constructor() {\n    super();\n    this.dirName = resolve(homedir(), '.medplum');\n    this.fileName = resolve(this.dirName, 'credentials');\n  }\n\n  clear(): void {\n    this.writeFile({});\n  }\n\n  getString(key: string): string | undefined {\n    return this.readFile()?.[key];\n  }\n\n  setString(key: string, value: string | undefined): void {\n    const data = this.readFile() || {};\n    if (value) {\n      data[key] = value;\n    } else {\n      delete data[key];\n    }\n    this.writeFile(data);\n  }\n\n  private readFile(): Record<string, string> | undefined {\n    if (existsSync(this.fileName)) {\n      return JSON.parse(readFileSync(this.fileName, 'utf8'));\n    }\n    return undefined;\n  }\n\n  private writeFile(data: Record<string, string>): void {\n    if (!existsSync(this.dirName)) {\n      mkdirSync(this.dirName);\n    }\n    writeFileSync(this.fileName, JSON.stringify(data, null, 2), 'utf8');\n  }\n}\n","import { MEDPLUM_VERSION, MedplumClient, normalizeErrorString } from '@medplum/core';\nimport { Command } from 'commander';\nimport dotenv from 'dotenv';\nimport { login, whoami } from './auth';\nimport { aws } from './aws/index';\nimport { bot, createBotDeprecate, deployBotDeprecate, saveBotDeprecate } from './bots';\nimport { project } from './project';\nimport { deleteObject, get, patch, post, put } from './rest';\nimport { FileSystemStorage } from './storage';\n\nexport let medplum: MedplumClient;\n\nexport async function main(medplumClient: MedplumClient, argv: string[]): Promise<void> {\n  medplum = medplumClient;\n\n  // Legacy support for MEDPLUM_CLIENT_ID and MEDPLUM_CLIENT_SECRET environment variables\n  const clientId = process.env['MEDPLUM_CLIENT_ID'];\n  const clientSecret = process.env['MEDPLUM_CLIENT_SECRET'];\n  if (clientId && clientSecret) {\n    await medplum.startClientLogin(clientId, clientSecret);\n  }\n  try {\n    const index = new Command('medplum').description('Command to access Medplum CLI');\n    index.version(MEDPLUM_VERSION);\n\n    // Auth commands\n    index.addCommand(login);\n    index.addCommand(whoami);\n\n    // REST commands\n    index.addCommand(get);\n    index.addCommand(post);\n    index.addCommand(patch);\n    index.addCommand(put);\n    index.addCommand(deleteObject);\n\n    // Project\n    index.addCommand(project);\n\n    // Bot Commands\n    index.addCommand(bot);\n\n    // Deprecated Bot Commands\n    index.addCommand(saveBotDeprecate);\n    index.addCommand(deployBotDeprecate);\n    index.addCommand(createBotDeprecate);\n\n    // AWS commands\n    index.addCommand(aws);\n\n    await index.parseAsync(argv);\n  } catch (err) {\n    console.error('Error: ' + normalizeErrorString(err));\n  }\n}\n\nif (require.main === module) {\n  dotenv.config();\n  const baseUrl = process.env['MEDPLUM_BASE_URL'] || 'https://api.medplum.com/';\n  const medplumClient = new MedplumClient({\n    fetch,\n    baseUrl,\n    storage: new FileSystemStorage(),\n    onUnauthenticated: onUnauthenticated,\n  });\n  main(medplumClient, process.argv).catch((err) => console.error('Unhandled error:', err));\n}\n\nfunction onUnauthenticated(): void {\n  console.log('Unauthenticated: run `npx medplum login` to sign 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You may close this window.`);\n      } catch (err) {\n        res.writeHead(400, { 'Content-Type': 'text/plain' });\n        res.end(`Error: ${normalizeErrorString(err)}`);\n      } finally {\n        server.close();\n      }\n    } else {\n      res.writeHead(404, { 'Content-Type': 'text/plain' });\n      res.end('Not found');\n    }\n  }).listen(9615);\n}\n\n/**\n * Opens a web browser to the specified URL.\n * See: https://hasinthaindrajee.medium.com/browser-sso-for-cli-applications-b0be743fa656\n * @param url The URL to open.\n */\nasync function openBrowser(url: string): Promise<void> {\n  const os = platform();\n  let cmd = undefined;\n  switch (os) {\n    case 'openbsd':\n    case 'linux':\n      cmd = `xdg-open '${url}'`;\n      break;\n    case 'darwin':\n      cmd = `open '${url}'`;\n      break;\n    case 'win32':\n      cmd = `cmd /c start \"\" \"${url}\"`;\n      break;\n    default:\n      throw new Error('Unsupported platform: ' + os);\n  }\n  exec(cmd);\n}\n\n/**\n * 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StackResource;\n  appBucket?: StackResource;\n  appDistribution?: StackResource;\n  storageBucket?: StackResource;\n}\n\nexport const cloudFormationClient = new CloudFormationClient({});\nexport const cloudFrontClient = new CloudFrontClient({});\nexport const ecsClient = new ECSClient({});\nexport const s3Client = new S3Client({});\nexport const tagKey = 'medplum:environment';\n\n/**\n * Returns a list of all AWS CloudFormation stacks (both Medplum and non-Medplum).\n * @returns List of AWS CloudFormation stacks.\n */\nexport async function getAllStacks(): Promise<(StackSummary & { StackName: string })[]> {\n  const listResult = await cloudFormationClient.send(new ListStacksCommand({}));\n  return (\n    (listResult.StackSummaries?.filter((s) => s.StackName && s.StackStatus !== 'DELETE_COMPLETE') as (StackSummary & {\n      StackName: string;\n    })[]) || []\n  );\n}\n\n/**\n * Returns Medplum stack details for the given tag.\n * @param tag The Medplum stack tag.\n * @returns The Medplum stack details.\n */\nexport async function getStackByTag(tag: string): Promise<MedplumStackDetails | undefined> {\n  const stackSummaries = await getAllStacks();\n  for (const stackSummary of stackSummaries) {\n    const stackName = stackSummary.StackName;\n    const details = await getStackDetails(stackName);\n    if (details?.tag === tag) {\n      return details;\n    }\n  }\n  return undefined;\n}\n\n/**\n * Returns Medplum stack details for the given stack name.\n * @param stackName The CloudFormation stack name.\n * @returns The Medplum stack details.\n */\nexport async function getStackDetails(stackName: string): Promise<MedplumStackDetails | undefined> {\n  const describeStacksCommand = new DescribeStacksCommand({ StackName: stackName });\n  const stackDetails = await cloudFormationClient.send(describeStacksCommand);\n  const stack = stackDetails?.Stacks?.[0];\n  const medplumTag = stack?.Tags?.find((tag) => tag.Key === tagKey);\n  if (!medplumTag) {\n    return undefined;\n  }\n\n  const stackResources = await cloudFormationClient.send(new DescribeStackResourcesCommand({ StackName: stackName }));\n  if (!stackResources.StackResources) {\n    return undefined;\n  }\n\n  const result: MedplumStackDetails = {\n    stack: stack as Stack,\n    tag: medplumTag.Value as string,\n  };\n\n  for (const resource of stackResources.StackResources) {\n    if (resource.ResourceType === 'AWS::ECS::Cluster') {\n      result.ecsCluster = resource;\n    } else if (resource.ResourceType === 'AWS::ECS::Service') {\n      result.ecsService = resource;\n    } else if (\n      resource.ResourceType === 'AWS::S3::Bucket' &&\n      resource.LogicalResourceId?.startsWith('FrontEndAppBucket')\n    ) {\n      result.appBucket = resource;\n    } else if (\n      resource.ResourceType === 'AWS::S3::Bucket' &&\n      resource.LogicalResourceId?.startsWith('StorageStorageBucket')\n    ) {\n      result.storageBucket = resource;\n    } else if (\n      resource.ResourceType === 'AWS::CloudFront::Distribution' &&\n      resource.LogicalResourceId?.startsWith('FrontEndAppDistribution')\n    ) {\n      result.appDistribution = resource;\n    }\n  }\n\n  return result;\n}\n\n/**\n * Prints the given Medplum stack details to stdout.\n * @param details The Medplum stack details.\n */\nexport function printStackDetails(details: MedplumStackDetails): void {\n  console.log(`Medplum Tag:     ${details.tag}`);\n  console.log(`Stack Name:      ${details.stack.StackName}`);\n  console.log(`Stack ID:        ${details.stack.StackId}`);\n  console.log(`Status:          ${details.stack.StackStatus}`);\n  console.log(`ECS Cluster:     ${details.ecsCluster?.PhysicalResourceId}`);\n  console.log(`ECS Service:     ${getEcsServiceName(details.ecsService)}`);\n  console.log(`App Bucket:      ${details.appBucket?.PhysicalResourceId}`);\n  console.log(`Storage Bucket:  ${details.storageBucket?.PhysicalResourceId}`);\n}\n\n/**\n * Parses the ECS service name from the given AWS ECS service resource.\n * @param resource The AWS ECS service resource.\n * @returns The ECS service name.\n */\nexport function getEcsServiceName(resource: StackResource | undefined): string | undefined {\n  return resource?.PhysicalResourceId?.split('/')?.pop() || '';\n}\n","import { getStackByTag, printStackDetails } from './utils';\n\n/**\n * The AWS \"describe\" command prints details about a Medplum CloudFormation stack.\n *\n * @param tag The Medplum stack tag.\n */\nexport async function describeStacksCommand(tag: string): Promise<void> {\n  const details = await getStackByTag(tag);\n  if (!details) {\n    console.log('Stack not found');\n    return;\n  }\n  printStackDetails(details);\n}\n","import { getAllStacks, getStackDetails, printStackDetails } from './utils';\n\n/**\n * The AWS \"list\" command prints summary details about all Medplum CloudFormation stacks.\n */\nexport async function listStacksCommand(): Promise<void> {\n  const stackSummaries = await getAllStacks();\n  for (const stackSummary of stackSummaries) {\n    const stackName = stackSummary.StackName;\n    const details = await getStackDetails(stackName);\n    if (!details) {\n      continue;\n    }\n    printStackDetails(details);\n    console.log('');\n  }\n}\n","import { MedplumClient } from '@medplum/core';\nimport { Bot, OperationOutcome } from '@medplum/fhirtypes';\nimport { existsSync, readFileSync, writeFile } from 'fs';\nimport { resolve } from 'path';\nimport internal from 'stream';\nimport tar from 'tar';\n\ninterface MedplumConfig {\n  readonly baseUrl?: string;\n  readonly clientId?: string;\n  readonly googleClientId?: string;\n  readonly recaptchaSiteKey?: string;\n  readonly registerEnabled?: boolean;\n  readonly bots?: MedplumBotConfig[];\n}\n\ninterface MedplumBotConfig {\n  readonly name: string;\n  readonly id: string;\n  readonly source: string;\n  readonly dist?: string;\n}\n\nexport function prettyPrint(input: unknown): void {\n  console.log(JSON.stringify(input, null, 2));\n}\n\nexport async function saveBot(medplum: MedplumClient, botConfig: MedplumBotConfig, bot: Bot): Promise<void> {\n  const code = readFileContents(botConfig.source);\n  if (!code) {\n    return;\n  }\n\n  try {\n    console.log('Update bot code.....');\n    const updateResult = await medplum.updateResource({\n      ...bot,\n      code,\n    });\n    if (!updateResult) {\n      console.log('Bot not modified');\n    } else {\n      console.log('Success! New bot version: ' + updateResult.meta?.versionId);\n    }\n  } catch (err) {\n    console.log('Update error: ', err);\n  }\n}\n\nexport async function deployBot(medplum: MedplumClient, botConfig: MedplumBotConfig, bot: Bot): Promise<void> {\n  const code = readFileContents(botConfig.dist ?? botConfig.source);\n  if (!code) {\n    return;\n  }\n\n  try {\n    console.log('Deploying bot...');\n    const deployResult = (await medplum.post(medplum.fhirUrl('Bot', bot.id as string, '$deploy'), {\n      code,\n    })) as OperationOutcome;\n    console.log('Deploy result: ' + deployResult.issue?.[0]?.details?.text);\n  } catch (err) {\n    console.log('Deploy error: ', err);\n  }\n}\n\nexport async function createBot(medplum: MedplumClient, argv: string[]): Promise<void> {\n  if (argv.length < 4) {\n    console.log(`Error: command needs to be npx medplum <new-bot-name> <project-id> <source-file> <dist-file>`);\n    return;\n  }\n  const botName = argv[0];\n  const projectId = argv[1];\n  const sourceFile = argv[2];\n  const distFile = argv[3];\n\n  try {\n    const body = {\n      name: botName,\n      description: '',\n    };\n    const newBot = await medplum.post('admin/projects/' + projectId + '/bot', body);\n    const bot = await medplum.readResource('Bot', newBot.id);\n\n    const botConfig = {\n      name: botName,\n      id: newBot.id,\n      source: sourceFile,\n      dist: distFile,\n    };\n    await saveBot(medplum, botConfig as MedplumBotConfig, bot);\n    console.log(`Success! Bot created: ${bot.id}`);\n\n    addBotToConfig(botConfig);\n  } catch (err) {\n    console.log('Error while creating new bot: ' + err);\n  }\n}\n\nexport function readBotConfigs(botName: string): MedplumBotConfig[] {\n  const regExBotName = new RegExp('^' + escapeRegex(botName).replace(/\\\\\\*/g, '.*') + '$');\n  const botConfigs = readConfig()?.bots?.filter((b) => regExBotName.test(b.name));\n  if (!botConfigs) {\n    return [];\n  }\n  return botConfigs;\n}\n\nexport function readConfig(tagName?: string): MedplumConfig | undefined {\n  const fileName = tagName ? `medplum.${tagName}.config.json` : 'medplum.config.json';\n  const content = readFileContents(fileName);\n  if (!content) {\n    return undefined;\n  }\n  return JSON.parse(content);\n}\n\nfunction readFileContents(fileName: string): string | undefined {\n  const path = resolve(process.cwd(), fileName);\n  if (!existsSync(path)) {\n    console.log('Error: File does not exist: ' + path);\n    return '';\n  }\n  return readFileSync(path, 'utf8');\n}\n\nfunction addBotToConfig(botConfig: MedplumBotConfig): void {\n  const config = readConfig();\n  config?.bots?.push(botConfig);\n  writeFile('medplum.config.json', JSON.stringify(config), () => {\n    console.log(`Bot added to config: ${botConfig.id}`);\n  });\n}\n\nfunction escapeRegex(str: string): string {\n  return str.replace(/[/\\-\\\\^$*+?.()|[\\]{}]/g, '\\\\$&');\n}\n\n/**\n * Creates a safe tar extractor that limits the number of files and total size.\n *\n * Expanding archive files without controlling resource consumption is security-sensitive\n *\n * See: https://sonarcloud.io/organizations/medplum/rules?open=typescript%3AS5042&rule_key=typescript%3AS5042\n *\n * @param destinationDir The destination directory where all files will be extracted.\n * @returns A tar file extractor.\n */\nexport function safeTarExtractor(destinationDir: string): internal.Writable {\n  const MAX_FILES = 100;\n  const MAX_SIZE = 10 * 1024 * 1024; // 10 MB\n\n  let fileCount = 0;\n  let totalSize = 0;\n\n  return tar.x({\n    cwd: destinationDir,\n    filter: (_path, entry) => {\n      fileCount++;\n      if (fileCount > MAX_FILES) {\n        throw new Error('Tar extractor reached max number of files');\n      }\n\n      totalSize += entry.size;\n      if (totalSize > MAX_SIZE) {\n        throw new Error('Tar extractor reached max size');\n      }\n\n      return true;\n    },\n  });\n}\n","import { CreateInvalidationCommand } from '@aws-sdk/client-cloudfront';\nimport { PutObjectCommand } from '@aws-sdk/client-s3';\nimport fastGlob from 'fast-glob';\nimport { createReadStream, mkdtempSync, readFileSync, readdirSync, rmSync, writeFileSync } from 'fs';\nimport fetch from 'node-fetch';\nimport { tmpdir } from 'os';\nimport { join, sep } from 'path';\nimport { pipeline } from 'stream/promises';\nimport { readConfig, safeTarExtractor } from '../utils';\nimport { cloudFrontClient, getStackByTag, s3Client } from './utils';\n\n/**\n * The AWS \"update-app\" command updates the Medplum app in a Medplum CloudFormation stack to the latest version.\n * @param tag The Medplum stack tag.\n */\nexport async function updateAppCommand(tag: string): Promise<void> {\n  const config = readConfig(tag);\n  if (!config) {\n    console.log('Config not found');\n    return;\n  }\n  const details = await getStackByTag(tag);\n  if (!details) {\n    console.log('Stack not found');\n    return;\n  }\n  const appBucket = details.appBucket;\n  if (!appBucket) {\n    console.log('App bucket not found');\n    return;\n  }\n\n  const tmpDir = await downloadNpmPackage('@medplum/app', 'latest');\n\n  // Replace variables in the app\n  replaceVariables(tmpDir, {\n    MEDPLUM_BASE_URL: config.baseUrl as string,\n    MEDPLUM_CLIENT_ID: config.clientId || '',\n    GOOGLE_CLIENT_ID: config.googleClientId || '',\n    RECAPTCHA_SITE_KEY: config.recaptchaSiteKey || '',\n    MEDPLUM_REGISTER_ENABLED: config.registerEnabled ? 'true' : 'false',\n  });\n\n  // Upload the app to S3 with correct content-type and cache-control\n  await uploadAppToS3(tmpDir, appBucket.PhysicalResourceId as string);\n\n  // Create a CloudFront invalidation to clear any cached resources\n  if (details.appDistribution?.PhysicalResourceId) {\n    await createInvalidation(details.appDistribution.PhysicalResourceId);\n  }\n\n  console.log('Done');\n}\n\n/**\n * Returns NPM package metadata for a given package name.\n * See: https://github.com/npm/registry/blob/master/docs/REGISTRY-API.md#getpackageversion\n * @param packageName The npm package name.\n */\nasync function getNpmPackageMetadata(packageName: string, version: string): Promise<any> {\n  const url = `https://registry.npmjs.org/${packageName}/${version}`;\n  const response = await fetch(url);\n  return response.json();\n}\n\n/**\n * Downloads and extracts an NPM package.\n * @param packageName The NPM package name.\n * @param version The NPM package version or \"latest\".\n * @returns Path to temporary directory where the package was downloaded and extracted.\n */\nasync function downloadNpmPackage(packageName: string, version: string): Promise<string> {\n  const packageMetadata = await getNpmPackageMetadata(packageName, version);\n  const tarballUrl = packageMetadata.dist.tarball as string;\n  const tmpDir = mkdtempSync(join(tmpdir(), 'tarball-'));\n  try {\n    const response = await fetch(tarballUrl);\n    const extractor = safeTarExtractor(tmpDir);\n    await pipeline(response.body, extractor);\n    return join(tmpDir, 'package', 'dist');\n  } catch (error) {\n    rmSync(tmpDir, { recursive: true, force: true });\n    throw error;\n  }\n}\n\n/**\n * Replaces variables in all JS files in the given folder.\n * @param folderName The folder name of the files.\n * @param replacements The collection of variable placeholders and replacements.\n */\nfunction replaceVariables(folderName: string, replacements: Record<string, string>): void {\n  for (const item of readdirSync(folderName, { withFileTypes: true })) {\n    const itemPath = join(folderName, item.name);\n    if (item.isDirectory()) {\n      replaceVariables(itemPath, replacements);\n    } else if (item.isFile() && itemPath.endsWith('.js')) {\n      replaceVariablesInFile(itemPath, replacements);\n    }\n  }\n}\n\n/**\n * Replaces variables in the JS file.\n * @param fileName The file name.\n * @param replacements The collection of variable placeholders and replacements.\n */\nfunction replaceVariablesInFile(fileName: string, replacements: Record<string, string>): void {\n  let contents = readFileSync(fileName, 'utf-8');\n  for (const [placeholder, replacement] of Object.entries(replacements)) {\n    contents = contents.replaceAll(`process.env.${placeholder}`, `'${replacement}'`);\n  }\n  writeFileSync(fileName, contents);\n}\n\n/**\n * Uploads the app to S3.\n * Ensures correct content-type and cache-control for each file.\n * @param tmpDir The temporary directory where the app is located.\n * @param bucketName The destination S3 bucket name.\n */\nasync function uploadAppToS3(tmpDir: string, bucketName: string): Promise<void> {\n  // Manually iterate and upload files\n  // Automatic content-type detection is not reliable on Microsoft Windows\n  // So we explicitly set content-type\n  const uploadPatterns: [string, string, boolean][] = [\n    // Cached\n    // These files generally have a hash, so they can be cached forever\n    // It is important to upload them first to avoid broken references from index.html\n    ['css/**/*.css', 'text/css', true],\n    ['css/**/*.css.map', 'application/json', true],\n    ['img/**/*.png', 'image/png', true],\n    ['img/**/*.svg', 'image/svg+xml', true],\n    ['js/**/*.js', 'application/javascript', true],\n    ['js/**/*.js.map', 'application/json', true],\n    ['js/**/*.txt', 'text/plain', true],\n    ['favicon.ico', 'image/vnd.microsoft.icon', true],\n    ['robots.txt', 'text/plain', true],\n    ['workbox-*.js', 'application/javascript', true],\n    ['workbox-*.js.map', 'application/json', true],\n\n    // Not cached\n    ['manifest.webmanifest', 'application/manifest+json', false],\n    ['service-worker.js', 'application/javascript', false],\n    ['service-worker.js.map', 'application/json', false],\n    ['index.html', 'text/html', false],\n  ];\n  for (const uploadPattern of uploadPatterns) {\n    await uploadFolderToS3({\n      rootDir: tmpDir,\n      bucketName,\n      fileNamePattern: uploadPattern[0],\n      contentType: uploadPattern[1],\n      cached: uploadPattern[2],\n    });\n  }\n}\n\n/**\n * Uploads a directory of files to S3.\n * @param options The upload options such as bucket name, content type, and cache control.\n */\nasync function uploadFolderToS3(options: {\n  rootDir: string;\n  bucketName: string;\n  fileNamePattern: string;\n  contentType: string;\n  cached: boolean;\n}): Promise<void> {\n  const items = fastGlob.sync(options.fileNamePattern, { cwd: options.rootDir });\n  for (const item of items) {\n    await uploadFileToS3(join(options.rootDir, item), options);\n  }\n}\n\n/**\n * Uploads a file to S3.\n * @param filePath The file path.\n * @param options The upload options such as bucket name, content type, and cache control.\n */\nasync function uploadFileToS3(\n  filePath: string,\n  options: {\n    rootDir: string;\n    bucketName: string;\n    contentType: string;\n    cached: boolean;\n  }\n): Promise<void> {\n  const fileStream = createReadStream(filePath);\n  const s3Key = filePath\n    .substring(options.rootDir.length + 1)\n    .split(sep)\n    .join('/');\n\n  const putObjectParams = {\n    Bucket: options.bucketName,\n    Key: s3Key,\n    Body: fileStream,\n    ContentType: options.contentType,\n    CacheControl: options.cached ? 'public, max-age=31536000' : 'no-cache, no-store, must-revalidate',\n  };\n\n  console.log(`Uploading ${s3Key} to ${options.bucketName}...`);\n  await s3Client.send(new PutObjectCommand(putObjectParams));\n}\n\n/**\n * Creates a CloudFront invalidation to clear the cache for all files.\n * This is not strictly necessary, but it helps to ensure that the latest version of the app is served.\n * In a perfect world, every deploy is clean, and hashed resources should be cached forever.\n * However, we do not recalculate hashes after variable replacements.\n * So if variables change, we need to invalidate the cache.\n * @param distributionId The CloudFront distribution ID.\n */\nasync function createInvalidation(distributionId: string): Promise<void> {\n  const response = await cloudFrontClient.send(\n    new CreateInvalidationCommand({\n      DistributionId: distributionId,\n      InvalidationBatch: {\n        CallerReference: `invalidate-all-${Date.now()}`,\n        Paths: {\n          Quantity: 1,\n          Items: ['/*'],\n        },\n      },\n    })\n  );\n  console.log(`Created invalidation with ID: ${response.Invalidation?.Id}`);\n}\n","import { UpdateServiceCommand } from '@aws-sdk/client-ecs';\nimport { ecsClient, getEcsServiceName, getStackByTag } from './utils';\n\n/**\n * The AWS \"update-server\" command updates the Medplum server in a Medplum CloudFormation stack.\n * @param tag The Medplum stack tag.\n * @returns\n */\nexport async function updateServerCommand(tag: string): Promise<void> {\n  const details = await getStackByTag(tag);\n  if (!details) {\n    console.log('Stack not found');\n    return;\n  }\n  const ecsCluster = details.ecsCluster?.PhysicalResourceId;\n  if (!ecsCluster) {\n    console.log('ECS Cluster not found');\n    return;\n  }\n  const ecsService = getEcsServiceName(details.ecsService);\n  if (!ecsService) {\n    console.log('ECS Service not found');\n    return;\n  }\n  await ecsClient.send(\n    new UpdateServiceCommand({\n      cluster: ecsCluster,\n      service: ecsService,\n      forceNewDeployment: true,\n    })\n  );\n  console.log(`Service \"${ecsService}\" updated successfully.`);\n}\n","import { ACMClient, CertificateSummary, ListCertificatesCommand, RequestCertificateCommand } from '@aws-sdk/client-acm';\nimport { PutParameterCommand, SSMClient } from '@aws-sdk/client-ssm';\nimport { GetCallerIdentityCommand, STSClient } from '@aws-sdk/client-sts';\nimport { MedplumInfraConfig } from '@medplum/core';\nimport { generateKeyPairSync, randomUUID } from 'crypto';\nimport { existsSync, writeFileSync } from 'fs';\nimport { resolve } from 'path';\nimport readline from 'readline';\n\ntype MedplumDomainType = 'api' | 'app' | 'storage';\ntype MedplumDomainSetting = `${MedplumDomainType}DomainName`;\ntype MedplumDomainCertSetting = `${MedplumDomainType}SslCertArn`;\n\nconst getDomainSetting = (domain: MedplumDomainType): MedplumDomainSetting => `${domain}DomainName`;\nconst getDomainCertSetting = (domain: MedplumDomainType): MedplumDomainCertSetting => `${domain}SslCertArn`;\n\nlet terminal: readline.Interface;\n\nexport async function initStackCommand(): Promise<void> {\n  const config = { apiPort: 8103, region: 'us-east-1' } as MedplumInfraConfig;\n  terminal = readline.createInterface({ input: process.stdin, output: process.stdout });\n  header('MEDPLUM');\n  print('This tool prepares the necessary prerequisites for deploying Medplum in your AWS account.');\n  print('');\n  print('Most Medplum infrastructure is deployed using the AWS CDK.');\n  print('However, some AWS resources must be created manually, such as email addresses and SSL certificates.');\n  print('This tool will help you create those resources.');\n  print('');\n  print('Upon completion, this tool will:');\n  print('  1. Generate a Medplum CDK config file (i.e., medplum.demo.config.json)');\n  print('  2. Optionally generate an AWS CloudFront signing key');\n  print('  3. Optionally request SSL certificates from AWS Certificate Manager');\n  print('  4. Optionally write server config settings to AWS Parameter Store');\n  print('');\n  print('The Medplum infra config file is an input to the Medplum CDK.');\n  print('The Medplum CDK will create and manage the necessary AWS resources.');\n  print('');\n  print('We will ask a series of questions to generate your infra config file.');\n  print('Some questions have predefined options in [square brackets].');\n  print('Some questions have default values in (parentheses), which you can accept by pressing Enter.');\n  print('Press Ctrl+C at any time to exit.');\n\n  header('ENVIRONMENT NAME');\n  print('Medplum deployments have a short environment name such as \"prod\", \"staging\", \"alice\", or \"demo\".');\n  print('The environment name is used in multiple places:');\n  print('  1. As part of config file names (i.e., medplum.demo.config.json)');\n  print('  2. As the base of CloudFormation stack names (i.e., MedplumDemo)');\n  print('  3. AWS Parameter Store keys (i.e., /medplum/demo/...)');\n  config.name = await ask('What is your environment name?', 'demo');\n  print('Using environment name \"' + config.name + '\"...');\n\n  header('CONFIG FILE');\n  print('Medplum Infrastructure will create a config file in the current directory.');\n  const configFileName = await ask('What is the config file name?', `medplum.${config.name}.config.json`);\n  if (existsSync(configFileName)) {\n    print('Config file already exists.');\n    await checkOk('Do you want to overwrite the config file?');\n  }\n  print('Using config file \"' + configFileName + '\"...');\n  writeConfig(configFileName, config);\n\n  header('AWS REGION');\n  print('Most Medplum resources will be created in a single AWS region.');\n  config.region = await ask('Enter your AWS region:', 'us-east-1');\n  writeConfig(configFileName, config);\n\n  header('AWS ACCOUNT NUMBER');\n  print('Medplum Infrastructure will use your AWS account number to create AWS resources.');\n  const currentAccountId = await getAccountId(config.region);\n  print('Using the AWS CLI, your current account ID is: ' + currentAccountId);\n  config.accountNumber = await ask('What is your AWS account number?', currentAccountId);\n  writeConfig(configFileName, config);\n\n  header('STACK NAME');\n  print('Medplum will create a CloudFormation stack to manage AWS resources.');\n  const defaultStackName = 'Medplum' + config.name.charAt(0).toUpperCase() + config.name.slice(1);\n  config.stackName = await ask('Enter your CloudFormation stack name?', defaultStackName);\n  writeConfig(configFileName, config);\n\n  header('BASE DOMAIN NAME');\n  print('Medplum deploys multiple subdomains for various services.');\n  print('');\n  print('For example, \"api.\" for the REST API and \"app.\" for the web application.');\n  print('The base domain name is the common suffix for all subdomains.');\n  print('');\n  print('For example, if your base domain name is \"example.com\",');\n  print('then the REST API will be \"api.example.com\".');\n  print('');\n  print('Note that you must own the base domain, and it must use Route53 DNS.');\n  print('Medplum will create subdomains for you, but you must configure the base domain.');\n  while (!config.domainName) {\n    config.domainName = await ask('Enter your base domain name:');\n  }\n  writeConfig(configFileName, config);\n\n  header('SUPPORT EMAIL');\n  print('Medplum sends transactional emails to users.');\n  print('For example, emails to new users or for password reset.');\n  print('Medplum will use the support email address to send these emails.');\n  print('Note that you must verify the support email address in SES.');\n  const supportEmail = await ask('Enter your support email address:');\n\n  header('API DOMAIN NAME');\n  print('Medplum deploys a REST API for the backend services.');\n  config.apiDomainName = await ask('Enter your REST API domain name:', 'api.' + config.domainName);\n  writeConfig(configFileName, config);\n\n  header('APP DOMAIN NAME');\n  print('Medplum deploys a web application for the user interface.');\n  config.appDomainName = await ask('Enter your web application domain name:', 'app.' + config.domainName);\n  writeConfig(configFileName, config);\n\n  header('STORAGE DOMAIN NAME');\n  print('Medplum deploys a storage service for file uploads.');\n  config.storageDomainName = await ask('Enter your storage domain name:', 'storage.' + config.domainName);\n  writeConfig(configFileName, config);\n\n  header('STORAGE BUCKET');\n  print('Medplum uses an S3 bucket to store binary content such as file uploads.');\n  print('Medplum will create a the S3 bucket as part of the CloudFormation stack.');\n  config.storageBucketName = await ask('Enter your storage bucket name:', 'medplum-' + config.name + '-storage');\n  writeConfig(configFileName, config);\n\n  header('MAX AVAILABILITY ZONES');\n  print('Medplum API servers can be deployed in multiple availability zones.');\n  print('This provides redundancy and high availability.');\n  print('However, it also increases the cost of the deployment.');\n  print('If you want to use all availability zones, choose a large number such as 99.');\n  print('If you want to restrict the number, for example to manage EIP limits,');\n  print('then choose a small number such as 1 or 2.');\n  config.maxAzs = await chooseInt('Enter the maximum number of availability zones:', [1, 2, 3, 99], 2);\n\n  header('DATABASE INSTANCES');\n  print('Medplum uses a relational database to store data.');\n  print('You can set up your own database,');\n  print('or Medplum can create a new RDS database as part of the CloudFormation stack.');\n  if (await yesOrNo('Do you want to create a new RDS database as part of the CloudFormation stack?')) {\n    print('Medplum will create a new RDS database as part of the CloudFormation stack.');\n    print('');\n    print('If you need high availability, you can choose multiple instances.');\n    print('Use 1 for a single instance, or 2 for a primary and a standby.');\n    config.rdsInstances = await chooseInt('Enter the number of database instances:', [1, 2], 1);\n  } else {\n    print('Medplum will not create a new RDS database.');\n    print('Please create a new RDS database and enter the database name, username, and password.');\n    print('Set the AWS Secrets Manager secret ARN in the config file in the \"rdsSecretsArn\" setting.');\n    config.rdsSecretsArn = 'TODO';\n  }\n  writeConfig(configFileName, config);\n\n  header('SERVER INSTANCES');\n  print('Medplum uses AWS Fargate to run the API servers.');\n  print('Medplum will create a new Fargate cluster as part of the CloudFormation stack.');\n  print('Fargate will automatically scale the number of servers up and down.');\n  print('If you need high availability, you can choose multiple instances.');\n  config.desiredServerCount = await chooseInt('Enter the number of server instances:', [1, 2, 3, 4, 6, 8], 1);\n  writeConfig(configFileName, config);\n\n  header('SERVER MEMORY');\n  print('You can choose the amount of memory for each server instance.');\n  print('The default is 512 MB, which is sufficient for getting started.');\n  print('Note that only certain CPU units are compatible with memory units.');\n  print('Consult AWS Fargate \"Task Definition Parameters\" for more information.');\n  config.serverMemory = await chooseInt('Enter the server memory (MB):', [512, 1024, 2048, 4096, 8192, 16384], 512);\n  writeConfig(configFileName, config);\n\n  header('SERVER CPU');\n  print('You can choose the amount of CPU for each server instance.');\n  print('CPU is expressed as an integer using AWS CPU units');\n  print('The default is 256, which is sufficient for getting started.');\n  print('Note that only certain CPU units are compatible with memory units.');\n  print('Consult AWS Fargate \"Task Definition Parameters\" for more information.');\n  config.serverCpu = await chooseInt('Enter the server CPU:', [256, 512, 1024, 2048, 4096, 8192, 16384], 256);\n  writeConfig(configFileName, config);\n\n  header('SERVER IMAGE');\n  print('Medplum uses Docker images for the API servers.');\n  print('You can choose the image to use for the servers.');\n  print('Docker images can be loaded from either Docker Hub or AWS ECR.');\n  print('The default is the latest Medplum release.');\n  config.serverImage = await ask('Enter the server image:', 'medplum/medplum-server:latest');\n  writeConfig(configFileName, config);\n\n  header('SIGNING KEY');\n  print('Medplum uses AWS CloudFront Presigned URLs for binary content such as file uploads.');\n  const { privateKey, publicKey, passphrase } = generateSigningKey();\n  config.storagePublicKey = publicKey;\n  writeConfig(configFileName, config);\n\n  header('SSL CERTIFICATES');\n  print(`Medplum will now check for existing SSL certificates for the subdomains.`);\n  const allCerts = await listAllCertificates(config.region);\n  print('Found ' + allCerts.length + ' certificate(s).');\n\n  // Process certificates for each subdomain\n  // Note: The \"api\" certificate must be created in the same region as the API\n  // Note: The \"app\" and \"storage\" certificates must be created in us-east-1\n  for (const { region, certName } of [\n    { region: config.region, certName: 'api' },\n    { region: 'us-east-1', certName: 'app' },\n    { region: 'us-east-1', certName: 'storage' },\n  ] as const) {\n    print('');\n    const arn = await processCert(config, allCerts, region, certName);\n    config[getDomainCertSetting(certName)] = arn;\n    writeConfig(configFileName, config);\n  }\n\n  header('AWS PARAMETER STORE');\n  print('Medplum uses AWS Parameter Store to store sensitive configuration values.');\n  print('These values will be encrypted at rest.');\n  print(`The values will be stored in the \"/medplum/${config.name}\" path.`);\n\n  const serverParams = {\n    port: config.apiPort,\n    baseUrl: `https://${config.apiDomainName}/`,\n    appBaseUrl: `https://${config.appDomainName}/`,\n    storageBaseUrl: `https://${config.storageDomainName}/binary/`,\n    binaryStorage: `s3:${config.storageBucketName}`,\n    signingKey: privateKey,\n    signingKeyPassphrase: passphrase,\n    supportEmail: supportEmail,\n  };\n\n  print(\n    JSON.stringify(\n      {\n        ...serverParams,\n        signingKey: '****',\n        signingKeyPassphrase: '****',\n      },\n      null,\n      2\n    )\n  );\n\n  await checkOk('Do you want to store these values in AWS Parameter Store?');\n  await writeParameters(config.region, `/medplum/${config.name}/`, serverParams);\n\n  header('DONE!');\n  print('Medplum configuration complete.');\n  print('You can now proceed to deploying the Medplum infrastructure with CDK.');\n  print('Run:');\n  print('');\n  print(`    npx cdk bootstrap -c config=${configFileName}`);\n  print(`    npx cdk synth -c config=${configFileName}`);\n  if (config.region === 'us-east-1') {\n    print(`    npx cdk deploy -c config=${configFileName}`);\n  } else {\n    print(`    npx cdk deploy -c config=${configFileName} --all`);\n  }\n  print('');\n  print('See Medplum documentation for more information:');\n  print('');\n  print('    https://www.medplum.com/docs/self-hosting/install-on-aws');\n  print('');\n}\n\n/** Prints to stdout. */\nfunction print(text: string): void {\n  terminal.write(text + '\\n');\n}\n\n/** Prints a header with extra line spacing. */\nfunction header(text: string): void {\n  print('\\n' + text + '\\n');\n}\n\n/** Prints a question and waits for user input. */\nfunction ask(text: string, defaultValue: string | number = ''): Promise<string> {\n  return new Promise((resolve) => {\n    terminal.question(text + (defaultValue ? ' (' + defaultValue + ')' : '') + ' ', (answer: string) => {\n      resolve(answer || defaultValue.toString());\n    });\n  });\n}\n\n/** Prints a question and waits for user to choose one of the provided options. */\nasync function choose(text: string, options: (string | number)[], defaultValue = ''): Promise<string> {\n  const str = text + ' [' + options.map((o) => (o === defaultValue ? '(' + o + ')' : o)).join('|') + ']';\n  // eslint-disable-next-line no-constant-condition\n  while (true) {\n    const answer = (await ask(str)) || defaultValue;\n    if (options.includes(answer)) {\n      return answer;\n    }\n    print('Please choose one of the following options: ' + options.join(', '));\n  }\n}\n\n/** Prints a question and waits for the user to choose a valid integer option. */\nasync function chooseInt(text: string, options: number[], defaultValue = 0): Promise<number> {\n  return parseInt(\n    await choose(\n      text,\n      options.map((o) => o.toString()),\n      defaultValue.toString()\n    )\n  );\n}\n\n/** Prints a question and waits for the user to choose yes or no. */\nasync function yesOrNo(text: string): Promise<boolean> {\n  return (await choose(text, ['y', 'n'])).toLowerCase() === 'y';\n}\n\n/** Prints a question and waits for the user to confirm yes. Throws error on no, and exits the program. */\nasync function checkOk(text: string): Promise<void> {\n  if (!(await yesOrNo(text))) {\n    print('Exiting...');\n    throw new Error('User cancelled');\n  }\n}\n\n/**\n * Writes a config file to disk.\n * @param configFileName The config file name.\n * @param config The config file contents.\n */\nfunction writeConfig(configFileName: string, config: MedplumInfraConfig): void {\n  writeFileSync(resolve(configFileName), JSON.stringify(config, undefined, 2), 'utf-8');\n}\n\n/**\n * Returns the current AWS account ID.\n * This is used as the default value for the \"accountNumber\" config setting.\n * @param region The AWS region.\n * @returns The AWS account ID.\n */\nasync function getAccountId(region: string): Promise<string | undefined> {\n  try {\n    const client = new STSClient({ region });\n    const command = new GetCallerIdentityCommand({});\n    const response = await client.send(command);\n    return response.Account as string;\n  } catch (err) {\n    console.log('Warning: Unable to get AWS account ID', (err as Error).message);\n    return undefined;\n  }\n}\n\n/**\n * Returns a list of all AWS certificates.\n * This is used to find existing certificates for the subdomains.\n * If the primary region is not us-east-1, then certificates in us-east-1 will also be returned.\n * @param region The AWS region.\n * @returns The list of AWS Certificates.\n */\nasync function listAllCertificates(region: string): Promise<CertificateSummary[]> {\n  const result = await listCertificates(region);\n  if (region !== 'us-east-1') {\n    const usEast1Result = await listCertificates('us-east-1');\n    result.push(...usEast1Result);\n  }\n  return result;\n}\n\n/**\n * Returns a list of AWS Certificates.\n * This is used to find existing certificates for the subdomains.\n * @param region The AWS region.\n * @returns The list of AWS Certificates.\n */\nasync function listCertificates(region: string): Promise<CertificateSummary[]> {\n  try {\n    const client = new ACMClient({ region });\n    const command = new ListCertificatesCommand({ MaxItems: 1000 });\n    const response = await client.send(command);\n    return response.CertificateSummaryList as CertificateSummary[];\n  } catch (err) {\n    console.log('Warning: Unable to list certificates', (err as Error).message);\n    return [];\n  }\n}\n\n/**\n * Processes a required certificate.\n *\n * 1. If the certificate already exists, return the ARN.\n * 2. If the certificate does not exist, and the user wants to create a new certificate, create it and return the ARN.\n * 3. If the certificate does not exist, and the user does not want to create a new certificate, return a placeholder.\n *\n * @param config In-progress config settings.\n * @param allCerts List of all existing certificates.\n * @param region The AWS region where the certificate is needed.\n * @param certName The name of the certificate (api, app, or storage).\n * @returns The ARN of the certificate or placeholder if a new certificate is needed.\n */\nasync function processCert(\n  config: MedplumInfraConfig,\n  allCerts: CertificateSummary[],\n  region: string,\n  certName: 'api' | 'app' | 'storage'\n): Promise<string> {\n  const domainName = config[getDomainSetting(certName)];\n  const existingCert = allCerts.find((cert) => cert.CertificateArn?.includes(region) && cert.DomainName === domainName);\n  if (existingCert) {\n    print(`Found existing certificate for \"${domainName}\" in \"${region}.`);\n    return existingCert.CertificateArn as string;\n  }\n\n  print(`No existing certificate found for \"${domainName}\" in \"${region}.`);\n  if (!(await yesOrNo('Do you want to request a new certificate?'))) {\n    print(`Please add your certificate ARN to the config file in the \"${getDomainCertSetting(certName)}\" setting.`);\n    return 'TODO';\n  }\n\n  const arn = await requestCert(region, domainName);\n  print('Certificate ARN: ' + arn);\n  return arn;\n}\n\n/**\n * Requests an AWS Certificate.\n * @param region The AWS region.\n * @param domain The domain name.\n * @returns The AWS Certificate ARN on success, or undefined on failure.\n */\nasync function requestCert(region: string, domain: string): Promise<string> {\n  try {\n    const validationMethod = await choose(\n      'Validate certificate using DNS or email validation?',\n      ['dns', 'email'],\n      'dns'\n    );\n    const client = new ACMClient({ region });\n    const command = new RequestCertificateCommand({\n      DomainName: domain,\n      ValidationMethod: validationMethod.toUpperCase(),\n    });\n    const response = await client.send(command);\n    return response.CertificateArn as string;\n  } catch (err) {\n    console.log('Error: Unable to request certificate', (err as Error).message);\n    return 'TODO';\n  }\n}\n\n/**\n * Generates an AWS CloudFront signing key.\n *\n * Requirements:\n *\n *   1. It must be an SSH-2 RSA key pair.\n *   2. It must be in base64-encoded PEM format.\n *   3. It must be a 2048-bit key pair.\n *\n * See: https://docs.aws.amazon.com/AmazonCloudFront/latest/DeveloperGuide/private-content-trusted-signers.html#private-content-creating-cloudfront-key-pairs\n *\n * @returns A new signing key.\n */\nfunction generateSigningKey(): { publicKey: string; privateKey: string; passphrase: string } {\n  const passphrase = randomUUID();\n  const signingKey = generateKeyPairSync('rsa', {\n    modulusLength: 2048,\n    publicKeyEncoding: {\n      type: 'spki',\n      format: 'pem',\n    },\n    privateKeyEncoding: {\n      type: 'pkcs1',\n      format: 'pem',\n      cipher: 'aes-256-cbc',\n      passphrase,\n    },\n  });\n  return {\n    publicKey: signingKey.publicKey,\n    privateKey: signingKey.privateKey,\n    passphrase,\n  };\n}\n\n/**\n * Writes a parameter to AWS Parameter Store.\n * @param region The AWS region.\n * @param key The parameter key.\n * @param value The parameter value.\n */\nasync function writeParameter(region: string, key: string, value: string): Promise<void> {\n  const client = new SSMClient({ region });\n  const command = new PutParameterCommand({\n    Name: key,\n    Value: value,\n    Type: 'SecureString',\n    Overwrite: true,\n  });\n  await client.send(command);\n}\n\n/**\n * Writes a collection of parameters to AWS Parameter Store.\n * @param region The AWS region.\n * @param prefix The AWS Parameter Store prefix.\n * @param params The parameters to write.\n */\nasync function writeParameters(region: string, prefix: string, params: Record<string, string | number>): Promise<void> {\n  for (const [key, value] of Object.entries(params)) {\n    const valueStr = value.toString();\n    if (valueStr) {\n      await writeParameter(region, prefix + key, valueStr);\n    }\n  }\n}\n","import { Command } from 'commander';\nimport { describeStacksCommand } from './describe';\nimport { listStacksCommand } from './list';\nimport { updateAppCommand } from './update-app';\nimport { updateServerCommand } from './update-server';\nimport { initStackCommand } from './init';\n\nexport const aws = new Command('aws').description('Commands to manage AWS resources');\n\naws.command('init').description('Initialize a new Medplum AWS CloudFormation stacks').action(initStackCommand);\n\naws.command('list').description('List Medplum AWS CloudFormation stacks').action(listStacksCommand);\n\naws\n  .command('describe')\n  .description('Describe a Medplum AWS CloudFormation stack by tag')\n  .argument('<tag>')\n  .action(describeStacksCommand);\n\naws.command('update-server').description('Update the server image').argument('<tag>').action(updateServerCommand);\n\naws.command('update-app').description('Update the app site').argument('<tag>').action(updateAppCommand);\n","import { Command } from 'commander';\nimport { medplum } from '.';\nimport { createBot, deployBot, readBotConfigs, saveBot } from './utils';\nimport { MedplumClient } from '@medplum/core';\n\nexport const bot = new Command('bot');\n\n// Commands to deprecate\nexport const saveBotDeprecate = new Command('save-bot');\nexport const deployBotDeprecate = new Command('deploy-bot');\nexport const createBotDeprecate = new Command('create-bot');\n\nbot\n  .command('save')\n  .description('Saving the bot')\n  .argument('<botName>')\n  .action(async (botName) => {\n    await botWrapper(medplum, botName);\n  });\n\nbot\n  .command('deploy')\n  .description('Deploy the app to AWS')\n  .argument('<botName>')\n  .action(async (botName) => {\n    await botWrapper(medplum, botName, true);\n  });\n\nbot\n  .command('create')\n  .arguments('<botName> <projectId> <sourceFile> <distFile>')\n  .description('Creating a bot')\n  .action(async (botName, projectId, sourceFile, distFile) => {\n    await createBot(medplum, [botName, projectId, sourceFile, distFile]);\n  });\n\nexport async function botWrapper(medplum: MedplumClient, botName: string, deploy = false): Promise<void> {\n  const botConfigs = readBotConfigs(botName);\n  for (const botConfig of botConfigs) {\n    const bot = await medplum.readResource('Bot', botConfig.id);\n    await saveBot(medplum, botConfig, bot);\n    if (deploy) {\n      await deployBot(medplum, botConfig, bot);\n    }\n  }\n  console.log(`Number of bots deployed: ${botConfigs.length}`);\n}\n\n// Deprecate bot commands\nsaveBotDeprecate\n  .description('Saves the bot')\n  .argument('<botName>')\n  .action(async (botName) => {\n    await botWrapper(medplum, botName);\n  });\n\ndeployBotDeprecate\n  .description('Deploy the bot to AWS')\n  .argument('<botName>')\n  .action(async (botName) => {\n    await botWrapper(medplum, botName, true);\n  });\n\ncreateBotDeprecate\n  .arguments('<botName> <projectId> <sourceFile> <distFile>')\n  .description('Creates and saves the bot')\n  .action(async (botName, projectId, sourceFile, distFile) => {\n    await createBot(medplum, [botName, projectId, sourceFile, distFile]);\n  });\n","import { BundleEntry } from '@medplum/fhirtypes';\nimport { Command } from 'commander';\nimport { createReadStream, writeFile } from 'fs';\nimport { resolve } from 'path';\nimport { createInterface } from 'readline';\nimport { medplum } from '.';\nimport { prettyPrint } from './utils';\n\nexport const bulk = new Command('bulk');\n\nbulk\n  .command('export')\n  .option(\n    '-e, --exportLevel <exportLevel>',\n    'Optional export level. Defaults to system level export. \"Group/:id\" - Group of Patients, \"Patient\" - All Patients.'\n  )\n  .option('-t, --types <types>', 'optional resource types to export')\n  .option(\n    '-s, --since <since>',\n    'optional Resources will be included in the response if their state has changed after the supplied time (e.g. if Resource.meta.lastUpdated is later than the supplied _since time).'\n  )\n  .action(async ({ exportLevel, types, since }) => {\n    const response = await medplum.bulkExport(exportLevel, types, since);\n    response.output?.forEach(async ({ type, url }) => {\n      const data = await medplum.download(url as string);\n      const fileName = `${type}.ndjson`;\n      writeFile(`${fileName}`, await data.text(), () => {\n        console.log(`${fileName} is created`);\n      });\n    });\n  });\n\nbulk\n  .command('import')\n  .argument('<filename>', 'File Name')\n  .option(\n    '--numResourcesPerRequest <numResourcesPerRequest>',\n    'optional number of resources to import per batch request. Defaults to 25.',\n    '25'\n  )\n  .action(async (fileName, options) => {\n    const path = resolve(process.cwd(), fileName);\n    const { numResourcesPerRequest } = options;\n\n    await importFile(path, parseInt(numResourcesPerRequest));\n  });\n\nasync function importFile(path: string, numResourcesPerRequest: number): Promise<void> {\n  let entries = [] as BundleEntry[];\n  const fileStream = createReadStream(path);\n  const rl = createInterface({\n    input: fileStream,\n  });\n\n  for await (const line of rl) {\n    const resource = JSON.parse(line);\n    entries.push({\n      resource: resource,\n      request: {\n        method: 'POST',\n        url: resource.resourceType,\n      },\n    });\n    if (entries.length % numResourcesPerRequest === 0) {\n      await sendBatchEntries(entries);\n      entries = [];\n    }\n  }\n  if (entries.length > 0) {\n    await sendBatchEntries(entries);\n  }\n}\n\nasync function sendBatchEntries(entries: BundleEntry[]): Promise<void> {\n  const result = await medplum.executeBatch({\n    resourceType: 'Bundle',\n    type: 'transaction',\n    entry: entries,\n  });\n\n  result.entry?.forEach((resultEntry) => {\n    prettyPrint(resultEntry.response);\n  });\n}\n","import { Command, Option } from 'commander';\nimport { medplum } from '.';\nimport { MedplumClient, LoginState, InviteBody } from '@medplum/core';\n\nexport const project = new Command('project');\n\nproject\n  .command('list')\n  .description('List of current projects')\n  .action(async () => {\n    projectList(medplum);\n  });\n\nfunction projectList(medplum: MedplumClient): void {\n  const logins = medplum.getLogins();\n\n  const projects = logins\n    .map((login: LoginState) => `${login.project.display} (${login.project.reference})`)\n    .join('\\n\\n');\n\n  console.log(projects);\n}\n\nproject\n  .command('current')\n  .description('Project you are currently on')\n  .action(() => {\n    const login = medplum.getActiveLogin();\n    if (!login) {\n      throw new Error('Unauthenticated: run `npx medplum login` to login');\n    }\n    console.log(`${login.project.display} (${login.project.reference})`);\n  });\n\nproject\n  .command('switch')\n  .description('Switching to another project from the current one')\n  .argument('<projectId>')\n  .action(async (projectId) => {\n    await switchProject(medplum, projectId);\n  });\n\nproject\n  .command('invite')\n  .description('Invite a member to your current project (run npx medplum project current to confirm)')\n  .arguments('<firstName> <lastName> <email>')\n  .option('--send-email', 'If you want to send the email when inviting the user')\n  .option('--admin', 'If the user you are inviting is an admin')\n  .addOption(\n    new Option('-r, --role <role>', 'Role of user')\n      .choices(['Practitioner', 'Patient', 'RelatedPerson'])\n      .default('Practitioner')\n  )\n  .action(async (firstName, lastName, email, options) => {\n    const login = medplum.getActiveLogin();\n    if (!login) {\n      throw new Error('Unauthenticated: run `npx medplum login` to login');\n    }\n    if (!login.project?.reference) {\n      throw new Error('No current project to invite user to');\n    }\n\n    const projectId = login.project.reference.split('/')[1];\n    const inviteBody: InviteBody = {\n      resourceType: options.role,\n      firstName,\n      lastName,\n      email,\n      sendEmail: !!options.sendEmail,\n      admin: !!options.admin,\n    };\n    await inviteUser(projectId, inviteBody);\n  });\n\nasync function switchProject(medplum: MedplumClient, projectId: string): Promise<void> {\n  const logins = medplum.getLogins();\n  const login = logins.find((login: LoginState) => login.project?.reference?.includes(projectId));\n  if (!login) {\n    console.log(`Error: project ${projectId} not found. Make sure you are added as a user to this project`);\n  } else {\n    await medplum.setActiveLogin(login);\n    console.log(`Switched to project ${projectId}\\n`);\n  }\n}\n\nasync function inviteUser(projectId: string, inviteBody: InviteBody): Promise<void> {\n  try {\n    await medplum.invite(projectId, inviteBody);\n    if (inviteBody.sendEmail) {\n      console.log('Email sent');\n    }\n    console.log('See your users at https://app.medplum.com/admin/users');\n  } catch (err) {\n    console.log('Error while sending invite ' + err);\n  }\n}\n","import { convertToTransactionBundle } from '@medplum/core';\nimport { Command } from 'commander';\nimport { medplum } from '.';\nimport { prettyPrint } from './utils';\n\nexport const deleteObject = new Command('delete');\nexport const get = new Command('get');\nexport const patch = new Command('patch');\nexport const post = new Command('post');\nexport const put = new Command('put');\n\ndeleteObject.argument('<url>', 'Resource/$id').action(async (url) => {\n  prettyPrint(await medplum.delete(cleanUrl(url)));\n});\n\nget\n  .argument('<url>', 'Resource/$id')\n  .option('--as-transaction', 'Print out the bundle as a transaction type')\n  .action(async (url, options) => {\n    const response = await medplum.get(cleanUrl(url));\n    if (options.asTransaction) {\n      prettyPrint(convertToTransactionBundle(response));\n    } else {\n      prettyPrint(response);\n    }\n  });\n\npatch.arguments('<url> <body>').action(async (url, body) => {\n  prettyPrint(await medplum.patch(cleanUrl(url), parseBody(body)));\n});\n\npost.arguments('<url> <body>').action(async (url, body) => {\n  prettyPrint(await medplum.post(cleanUrl(url), parseBody(body)));\n});\n\nput.arguments('<url> <body>').action(async (url, body) => {\n  prettyPrint(await medplum.put(cleanUrl(url), parseBody(body)));\n});\n\nfunction parseBody(input: string | undefined): any {\n  if (!input) {\n    return undefined;\n  }\n  try {\n    return JSON.parse(input);\n  } catch (err) {\n    return input;\n  }\n}\n\nexport function cleanUrl(input: string): string {\n  const knownPrefixes = ['admin/', 'auth/', 'fhir/R4'];\n  if (knownPrefixes.some((p) => input.startsWith(p))) {\n    // If the URL starts with a known prefix, return it as-is\n    return input;\n  }\n  // Otherwise, default to FHIR\n  return 'fhir/R4/' + input;\n}\n","import { ClientStorage } from '@medplum/core';\nimport { existsSync, mkdirSync, readFileSync, writeFileSync } from 'fs';\nimport { homedir } from 'os';\nimport { resolve } from 'path';\n\nexport class FileSystemStorage extends ClientStorage {\n  private readonly dirName: string;\n  private readonly fileName: string;\n\n  constructor() {\n    super();\n    this.dirName = resolve(homedir(), '.medplum');\n    this.fileName = resolve(this.dirName, 'credentials');\n  }\n\n  clear(): void {\n    this.writeFile({});\n  }\n\n  getString(key: string): string | undefined {\n    return this.readFile()?.[key];\n  }\n\n  setString(key: string, value: string | undefined): void {\n    const data = this.readFile() || {};\n    if (value) {\n      data[key] = value;\n    } else {\n      delete data[key];\n    }\n    this.writeFile(data);\n  }\n\n  private readFile(): Record<string, string> | undefined {\n    if (existsSync(this.fileName)) {\n      return JSON.parse(readFileSync(this.fileName, 'utf8'));\n    }\n    return undefined;\n  }\n\n  private writeFile(data: Record<string, string>): void {\n    if (!existsSync(this.dirName)) {\n      mkdirSync(this.dirName);\n    }\n    writeFileSync(this.fileName, JSON.stringify(data, null, 2), 'utf8');\n  }\n}\n","import { MEDPLUM_VERSION, MedplumClient, normalizeErrorString } from '@medplum/core';\nimport { Command } from 'commander';\nimport dotenv from 'dotenv';\nimport { login, whoami } from './auth';\nimport { aws } from './aws/index';\nimport { bot, createBotDeprecate, deployBotDeprecate, saveBotDeprecate } from './bots';\nimport { bulk } from 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index.addCommand(deleteObject);\n\n    // Project\n    index.addCommand(project);\n\n    // Export\n    index.addCommand(bulk);\n\n    // Bot Commands\n    index.addCommand(bot);\n\n    // Deprecated Bot Commands\n    index.addCommand(saveBotDeprecate);\n    index.addCommand(deployBotDeprecate);\n    index.addCommand(createBotDeprecate);\n\n    // AWS commands\n    index.addCommand(aws);\n\n    await index.parseAsync(argv);\n  } catch (err) {\n    console.error('Error: ' + normalizeErrorString(err));\n  }\n}\n\nexport function run(): void {\n  dotenv.config();\n  const baseUrl = process.env['MEDPLUM_BASE_URL'] || 'https://api.medplum.com/';\n  const fhirUrlPath = process.env['MEDPLUM_FHIR_URL_PATH'] || '';\n  const accessToken = process.env['MEDPLUM_CLIENT_ACCESS_TOKEN'] || '';\n\n  const medplumClient = new MedplumClient({\n    fetch,\n    baseUrl,\n    fhirUrlPath,\n    storage: new FileSystemStorage(),\n    onUnauthenticated: onUnauthenticated,\n  });\n\n  if (accessToken) {\n    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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@medplum/cli",
-  "version": "2.0.19",
+  "version": "2.0.21",
   "description": "Medplum Command Line Interface",
   "author": "Medplum <hello@medplum.com>",
   "license": "Apache-2.0",
@@ -17,22 +17,25 @@
     "test": "jest"
   },
   "dependencies": {
+    "@aws-sdk/client-acm": "3.332.0",
     "@aws-sdk/client-cloudformation": "3.332.0",
     "@aws-sdk/client-cloudfront": "3.332.0",
     "@aws-sdk/client-ecs": "3.332.0",
     "@aws-sdk/client-s3": "3.332.0",
+    "@aws-sdk/client-ssm": "3.332.0",
+    "@aws-sdk/client-sts": "3.332.0",
     "@medplum/core": "*",
     "aws-sdk-client-mock": "2.1.1",
     "commander": "10.0.1",
     "dotenv": "16.0.3",
     "fast-glob": "3.2.12",
-    "node-fetch": "2.6.9",
-    "tar": "6.1.14"
+    "node-fetch": "2.6.11",
+    "tar": "6.1.15"
   },
   "devDependencies": {
     "@medplum/fhirtypes": "*",
     "@medplum/mock": "*",
-    "@types/node-fetch": "2.6.3",
+    "@types/node-fetch": "2.6.4",
     "@types/tar": "6.1.5"
   },
   "bin": {