@medplum/agent 5.0.8 → 5.0.10

package/dist/cjs/index.cjs

@@ -54337,7 +54337,7 @@ var require_package = __commonJS({
     module2.exports = {
       name: "winston",
       description: "A logger for just about everything.",
-      version: "3.18.3",
+      version: "3.19.0",
       author: "Charlie Robbins <charlie.robbins@gmail.com>",
       maintainers: [
         "David Hyde <dabh@alumni.stanford.edu>"
@@ -54383,9 +54383,8 @@ var require_package = __commonJS({
         "cross-spawn-async": "^2.2.5",
         eslint: "^8.57.0",
         hock: "^1.4.1",
-        mocha: "^10.3.0",
-        nyc: "^17.1.0",
-        rimraf: "5.0.1",
+        jest: "^29.7.0",
+        rimraf: "5.0.10",
         split2: "^4.1.0",
         "std-mocks": "^2.0.0",
         through2: "^4.0.2",
@@ -54396,11 +54395,12 @@ var require_package = __commonJS({
       types: "./index.d.ts",
       scripts: {
         lint: "eslint lib/*.js lib/winston/*.js lib/winston/**/*.js --resolve-plugins-relative-to ./node_modules/@dabh/eslint-config-populist",
-        test: "rimraf test/fixtures/logs/* && mocha",
-        "test:coverage": "nyc npm run test:unit",
-        "test:unit": "mocha test/unit",
-        "test:integration": "mocha test/integration",
-        build: "rimraf dist && babel lib -d dist",
+        test: "jest",
+        "test:unit": "jest -c test/jest.config.unit.js",
+        "test:integration": "jest -c test/jest.config.integration.js",
+        "test:typescript": "npx --package typescript tsc --project test",
+        build: "babel lib -d dist",
+        prebuild: "rimraf dist",
         prepublishOnly: "npm run build"
       },
       engines: {
@@ -59996,6 +59996,28 @@ var require_file = __commonJS({
           }
         }
       }
+      /**
+       * Called by Node.js Writable stream before emitting 'finish'.
+       * Ensures all buffered data is flushed to the underlying file stream
+       * before the transport signals completion.
+       * @param {Function} callback - Callback to signal completion.
+       * @private
+       */
+      _final(callback) {
+        if (this._opening) {
+          this.once("open", () => this._final(callback));
+          return;
+        }
+        this._stream.end();
+        if (!this._dest) {
+          return callback();
+        }
+        if (this._dest.writableFinished) {
+          return callback();
+        }
+        this._dest.once("finish", callback);
+        this._dest.once("error", callback);
+      }
       /**
        * Core logging method exposed to Winston. Metadata is optional.
        * @param {Object} info - TODO: add param description.
@@ -61669,6 +61691,7 @@ var require_logger = __commonJS({
               if (info instanceof Error) {
                 infoClone.stack = info.stack;
                 infoClone.message = info.message;
+                infoClone.cause = info.cause;
               }
               logger.write(infoClone);
             }
@@ -67624,7 +67647,7 @@ var ur = class {
   }
   consumeAndParse(e = 1 / 0) {
     let t = this.consume(), n = this.prefixParselets[t.id];
-    if (!n) throw Error(`Parse error at "${t.value}" (line ${t.line}, column ${t.column}). No matching prefix parselet.`);
+    if (!n) throw new Error(`Parse error at "${t.value}" (line ${t.line}, column ${t.column}). No matching prefix parselet.`);
     let i = n.parse(this, t);
     for (; e > this.getPrecedence(); ) {
       let o2 = this.consume();
@@ -67639,14 +67662,14 @@ var ur = class {
     return t ? t.precedence : 1 / 0;
   }
   consume(e, t) {
-    if (!this.tokens.length) throw Error("Cant consume unknown more tokens.");
+    if (!this.tokens.length) throw new Error("Cant consume unknown more tokens.");
     if (e && this.peek()?.id !== e) {
       let n = this.peek();
-      throw Error(`Expected ${e} but got "${n.id}" (${n.value}) at line ${n.line} column ${n.column}.`);
+      throw new Error(`Expected ${e} but got "${n.id}" (${n.value}) at line ${n.line} column ${n.column}.`);
     }
     if (t && this.peek()?.value !== t) {
       let n = this.peek();
-      throw Error(`Expected "${t}" but got "${n.value}" at line ${n.line} column ${n.column}.`);
+      throw new Error(`Expected "${t}" but got "${n.value}" at line ${n.line} column ${n.column}.`);
     }
     return this.tokens.shift();
   }
@@ -68216,7 +68239,7 @@ function si(r6) {
 }
 function ai(r6) {
   let e = ci(r6), t = new Uint8Array(e), n = new Array(t.length);
-  for (let i = 0; i < t.length; i++) n[i] = String.fromCharCode(t[i]);
+  for (let i = 0; i < t.length; i++) n[i] = String.fromCodePoint(t[i]);
   return window.btoa(n.join(""));
 }
 function ci(r6) {
@@ -68256,7 +68279,7 @@ function fi(r6) {
   return typeof r6 == "object" && !Array.isArray(r6) && !(r6 instanceof URLSearchParams) && (r6 = Object.fromEntries(Object.entries(r6).filter((e) => e[1] !== void 0))), new URLSearchParams(r6).toString();
 }
 var ds = /^(([a-zA-Z0-9]|[a-zA-Z0-9][a-zA-Z0-9\-_]*[a-zA-Z0-9])\.)*([A-Za-z0-9]|[A-Za-z0-9][A-Za-z0-9\-_]*[A-Za-z0-9])$/;
-function jl(r6) {
+function $l(r6) {
   return ds.test(r6);
 }
 function Xe(r6, e) {
@@ -68822,7 +68845,7 @@ var ie = { assign(r6) {
 } };
 function fa(r6) {
   if (q()) {
-    let t = window.atob(r6), n = Uint8Array.from(t, (i) => i.charCodeAt(0));
+    let t = window.atob(r6), n = Uint8Array.from(t, (i) => i.codePointAt(0));
     return new window.TextDecoder().decode(n);
   }
   let e = Xr();
@@ -68831,7 +68854,7 @@ function fa(r6) {
 }
 function Wt(r6) {
   if (q()) {
-    let t = new window.TextEncoder().encode(r6), n = String.fromCharCode.apply(null, t);
+    let t = new window.TextEncoder().encode(r6), n = String.fromCodePoint.apply(null, t);
     return window.btoa(n);
   }
   let e = Xr();
@@ -68851,7 +68874,7 @@ async function Vi(r6) {
   return crypto.subtle.digest("SHA-256", new TextEncoder().encode(r6));
 }
 function oe() {
-  return "xxxxxxxx-xxxx-4xxx-yxxx-xxxxxxxxxxxx".replaceAll(/[xy]/g, (r6) => {
+  return typeof crypto < "u" && "randomUUID" in crypto ? crypto.randomUUID() : "xxxxxxxx-xxxx-4xxx-yxxx-xxxxxxxxxxxx".replaceAll(/[xy]/g, (r6) => {
     let e = Math.trunc(Math.random() * 16);
     return (r6 === "x" ? e : e & 3 | 8).toString(16);
   });
@@ -69528,7 +69551,7 @@ var zt = class {
     return this.masterSubEmitter || (this.masterSubEmitter = new it(...Array.from(this.criteriaEntries.keys()))), this.masterSubEmitter;
   }
 };
-var an = "5.0.8-2b1f5fb";
+var an = "5.0.10-1efb88d";
 var La = w.FHIR_JSON + ", */*; q=0.1";
 var Fa = "https://api.medplum.com/";
 var Na = 1e3;
@@ -69577,8 +69600,9 @@ var Jt = class extends Z {
     c(this, "initPromise");
     c(this, "initComplete", true);
     c(this, "keyValueClient");
+    c(this, "logLevel");
     if (t?.baseUrl && !t.baseUrl.startsWith("http")) throw new Error("Base URL must start with http or https");
-    this.options = t ?? {}, this.fetch = t?.fetch ?? Ha(), this.storage = t?.storage ?? new nt(void 0, t?.storagePrefix), this.createPdfImpl = t?.createPdf, this.baseUrl = Hr(t?.baseUrl ?? Fa), this.fhirBaseUrl = H(this.baseUrl, t?.fhirUrlPath ?? "fhir/R4"), this.authorizeUrl = H(this.baseUrl, t?.authorizeUrl ?? "oauth2/authorize"), this.tokenUrl = H(this.baseUrl, t?.tokenUrl ?? "oauth2/token"), this.logoutUrl = H(this.baseUrl, t?.logoutUrl ?? "oauth2/logout"), this.fhircastHubUrl = H(this.baseUrl, t?.fhircastHubUrl ?? "fhircast/STU3"), this.clientId = t?.clientId ?? "", this.clientSecret = t?.clientSecret ?? "", this.credentialsInHeader = t?.authCredentialsMethod === "header", this.defaultHeaders = t?.defaultHeaders ?? {}, this.onUnauthenticated = t?.onUnauthenticated, this.refreshGracePeriod = t?.refreshGracePeriod ?? Wa, this.cacheTime = t?.cacheTime ?? (q() ? Ua : Ba), this.cacheTime > 0 ? this.requestCache = new Ve(t?.resourceCacheSize ?? Na) : this.requestCache = void 0, t?.autoBatchTime ? (this.autoBatchTime = t.autoBatchTime, this.autoBatchQueue = []) : (this.autoBatchTime = 0, this.autoBatchQueue = void 0), t?.accessToken && this.setAccessToken(t.accessToken), this.storage.getInitPromise === void 0 ? (t?.accessToken || this.attemptResumeActiveLogin().catch(console.error), this.initPromise = Promise.resolve(), this.dispatchEvent({ type: "storageInitialized" })) : (this.initComplete = false, this.initPromise = this.storage.getInitPromise(), this.initPromise.then(() => {
+    this.options = t ?? {}, this.fetch = t?.fetch ?? Ha(), this.storage = t?.storage ?? new nt(void 0, t?.storagePrefix), this.createPdfImpl = t?.createPdf, this.baseUrl = Hr(t?.baseUrl ?? Fa), this.fhirBaseUrl = H(this.baseUrl, t?.fhirUrlPath ?? "fhir/R4"), this.authorizeUrl = H(this.baseUrl, t?.authorizeUrl ?? "oauth2/authorize"), this.tokenUrl = H(this.baseUrl, t?.tokenUrl ?? "oauth2/token"), this.logoutUrl = H(this.baseUrl, t?.logoutUrl ?? "oauth2/logout"), this.fhircastHubUrl = H(this.baseUrl, t?.fhircastHubUrl ?? "fhircast/STU3"), this.clientId = t?.clientId ?? "", this.clientSecret = t?.clientSecret ?? "", this.credentialsInHeader = t?.authCredentialsMethod === "header", this.defaultHeaders = t?.defaultHeaders ?? {}, this.onUnauthenticated = t?.onUnauthenticated, this.refreshGracePeriod = t?.refreshGracePeriod ?? Wa, this.logLevel = this.initializeLogLevel(t), this.cacheTime = t?.cacheTime ?? (q() ? Ua : Ba), this.cacheTime > 0 ? this.requestCache = new Ve(t?.resourceCacheSize ?? Na) : this.requestCache = void 0, t?.autoBatchTime ? (this.autoBatchTime = t.autoBatchTime, this.autoBatchQueue = []) : (this.autoBatchTime = 0, this.autoBatchQueue = void 0), t?.accessToken && this.setAccessToken(t.accessToken), this.storage.getInitPromise === void 0 ? (t?.accessToken || this.attemptResumeActiveLogin().catch(console.error), this.initPromise = Promise.resolve(), this.dispatchEvent({ type: "storageInitialized" })) : (this.initComplete = false, this.initPromise = this.storage.getInitPromise(), this.initPromise.then(() => {
       t?.accessToken || this.attemptResumeActiveLogin().catch(console.error), this.initComplete = true, this.dispatchEvent({ type: "storageInitialized" });
     }).catch((n) => {
       console.error(n), this.initComplete = true, this.dispatchEvent({ type: "storageInitFailed", payload: { error: n } });
@@ -69590,6 +69614,9 @@ var Jt = class extends Z {
   getInitPromise() {
     return this.initPromise;
   }
+  initializeLogLevel(t) {
+    return t?.logLevel ? t.logLevel : t?.verbose !== void 0 && t.verbose ? "verbose" : "none";
+  }
   async attemptResumeActiveLogin() {
     let t = this.getActiveLogin();
     t && (this.setAccessToken(t.accessToken, t.refreshToken), await this.refreshProfile());
@@ -70111,9 +70138,9 @@ var Jt = class extends Z {
     t.startsWith("http") || (t = H(this.baseUrl, t));
     let i = n?.maxRetries ?? 2;
     for (let o2 = 0; o2 <= i; o2++) try {
-      this.options.verbose && this.logRequest(t, n);
+      this.logLevel !== "none" && this.logRequest(t, n);
       let s = await this.fetch(t, n);
-      if (this.options.verbose && this.logResponse(s), this.setCurrentRateLimit(s), o2 >= i || !Ja(s)) return s;
+      if (this.logLevel !== "none" && this.logResponse(s), this.setCurrentRateLimit(s), o2 >= i || !Ja(s)) return s;
       let a = this.getRetryDelay(o2), u2 = n.maxRetryTime ?? 2e3;
       if (a > u2) return s;
       await $r(a);
@@ -70123,13 +70150,13 @@ var Jt = class extends Z {
     throw new Error("Unreachable");
   }
   logRequest(t, n) {
-    if (console.log(`> ${n.method} ${t}`), n.headers) {
+    if (console.log(`> ${n.method} ${t}`), this.logLevel === "verbose" && n.headers) {
       let i = n.headers;
       for (let o2 of Rt(Object.keys(i))) console.log(`> ${o2}: ${i[o2]}`);
     }
   }
   logResponse(t) {
-    console.log(`< ${t.status} ${t.statusText}`), t.headers && t.headers.forEach((n, i) => console.log(`< ${i}: ${n}`));
+    console.log(`< ${t.status} ${t.statusText}`), this.logLevel === "verbose" && t.headers && t.headers.forEach((n, i) => console.log(`< ${i}: ${n}`));
   }
   setCurrentRateLimit(t) {
     if (!t?.headers || typeof t.headers.get != "function") return;
@@ -70242,8 +70269,14 @@ var Jt = class extends Z {
   setBasicAuth(t, n) {
     this.clientId = t, this.clientSecret = n, this.basicAuth = Wt(t + ":" + n);
   }
+  setLogLevel(t) {
+    this.logLevel = t, this.options.verbose = t === "verbose";
+  }
+  getLogLevel() {
+    return this.logLevel;
+  }
   setVerbose(t) {
-    this.options.verbose = t;
+    this.logLevel = t ? "verbose" : "none", this.options.verbose = t;
   }
   async fhircastSubscribe(t, n) {
     if (!(typeof t == "string" && t !== "")) throw new f(g("Invalid topic provided. Topic must be a valid string."));
@@ -70555,7 +70588,7 @@ var mo = class r5 {
     this.write(JSON.stringify({ level: Fc[e], timestamp: (/* @__PURE__ */ new Date()).toISOString(), msg: this.prefix ? `${this.prefix}${t}` : t, ...i, ...this.metadata }));
   }
 };
-function Zh(r6) {
+function em(r6) {
   let e = $e[r6.toUpperCase()];
   if (e === void 0) throw new Error(`Invalid log level: ${r6}`);
   return e;
@@ -70608,7 +70641,7 @@ async function xn(r6, e, t) {
 function Xc(r6) {
   return /^\d+\.\d+\.\d+(-[0-9a-z]{7})?$/.test(r6);
 }
-async function Pm(r6, e) {
+async function wm(r6, e) {
   if (!Xc(e)) return false;
   try {
     await xn(r6, e);
@@ -70617,7 +70650,7 @@ async function Pm(r6, e) {
   }
   return true;
 }
-async function wm(r6) {
+async function Am(r6) {
   let e = await xn(r6);
   if (!e.tag_name.startsWith("v")) throw new Error(`Invalid release name found. Release tag '${e.tag_name}' did not start with 'v'`);
   return e.tag_name.slice(1);
@@ -72160,7 +72193,7 @@ function parseLoggerConfigFromArgs(args) {
     let configValue;
     if (settingName === "logLevel") {
       try {
-        configValue = Zh(propVal);
+        configValue = em(propVal);
       } catch (err) {
         warnings.push(`Error while parsing ${propName}: ${Me(err)}`);
       }
@@ -73089,7 +73122,7 @@ IPv6 is currently unsupported.`;
         this.log.error(errMsg);
         throw new Error(errMsg);
       }
-      if (!((0, import_node_net4.isIPv4)(message.remote) || jl(message.remote))) {
+      if (!((0, import_node_net4.isIPv4)(message.remote) || $l(message.remote))) {
         const errMsg = `Attempted to ping an invalid host.
 
 "${message.remote}" is not a valid IPv4 address or a resolvable hostname.`;
@@ -73164,7 +73197,7 @@ ${result}`);
       return;
     }
     let child;
-    if (message.version && !await Pm("agent-upgrader", message.version)) {
+    if (message.version && !await wm("agent-upgrader", message.version)) {
       const versionTag = message.version ? `v${message.version}` : "latest";
       const errMsg = `Error during upgrading to version '${versionTag}'. '${message.version}' is not a valid version`;
       this.log.error(errMsg);
@@ -73175,7 +73208,7 @@ ${result}`);
       });
       return;
     }
-    const targetVersion = message.version ?? await wm("agent-upgrader");
+    const targetVersion = message.version ?? await Am("agent-upgrader");
     if (an.startsWith(targetVersion)) {
       if (!message?.force) {
         this.log.info(`Attempted to upgrade to version ${targetVersion}, but agent is already on that version`);
@@ -73463,7 +73496,7 @@ async function agentMain(argv) {
   for (const warning of warnings) {
     mainLogger.warn(warning);
   }
-  const app = new App(medplum, agentId, args.logLevel ? Zh(args.logLevel) : void 0, {
+  const app = new App(medplum, agentId, args.logLevel ? em(args.logLevel) : void 0, {
     mainLogger,
     channelLogger
   });
@@ -73508,7 +73541,7 @@ async function upgraderMain(argv) {
   if (argv[3] && !Xc(argv[3])) {
     throw new Error("Invalid version specified");
   }
-  const version = argv[3] ?? await wm("agent-upgrader");
+  const version = argv[3] ?? await Am("agent-upgrader");
   const binPath = getReleaseBinPath(version);
   if (!(0, import_node_fs6.existsSync)(binPath)) {
     globalLogger.info(`Could not find binary at "${binPath}". Downloading release from GitHub...`);

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@medplum/agent",
-  "version": "5.0.8",
+  "version": "5.0.10",
   "description": "Medplum Agent",
   "homepage": "https://www.medplum.com/",
   "bugs": {
@@ -26,18 +26,18 @@
     "test": "jest --runInBand"
   },
   "dependencies": {
-    "@medplum/core": "5.0.8",
-    "@medplum/hl7": "5.0.8",
+    "@medplum/core": "5.0.10",
+    "@medplum/hl7": "5.0.10",
     "dcmjs-dimse": "0.3.1",
-    "iconv-lite": "0.7.0",
+    "iconv-lite": "0.7.1",
     "semver": "7.7.3",
-    "winston": "3.18.3",
+    "winston": "3.19.0",
     "winston-daily-rotate-file": "5.0.0",
     "ws": "8.18.3"
   },
   "devDependencies": {
-    "@medplum/fhirtypes": "5.0.8",
-    "@medplum/mock": "5.0.8",
+    "@medplum/fhirtypes": "5.0.10",
+    "@medplum/mock": "5.0.10",
     "@types/async-eventemitter": "0.2.4",
     "@types/ws": "8.18.1",
     "mock-socket": "9.3.1",