@medemagroup/bgc-viewer-components 0.3.0 → 0.3.7

package/dist/web-components/bgc-viewer-components.umd.js

@@ -1,50 +1,34 @@
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f=n.clientX,h=n.clientY;f>=c.left&&f<=c.right&&h>=c.top&&h<=c.bottom||i.style("opacity","0").style("pointer-events","none")}}return i.on("click",c=>{c.stopPropagation(),o.style("display")==="none"?a():u()}),be.select(t).on("click.trackviewer-context",()=>{u()}),{destroy(){document.removeEventListener("mousemove",s),be.select(e.containerElement).on("mouseenter",null).on("mouseleave",null),be.select(t).on("click.trackviewer-context",null),o.remove(),i.remove()},updateCheckbox(c,f){const h=l.find(g=>g.label===c);h&&h.checkboxElement&&(f?h.checkboxElement.html("&#10003;").style("background","#2196F3").style("color","white").style("border-color","#2196F3"):h.checkboxElement.html("").style("background","white").style("border-color","#999"))},toggle(){o.style("display")==="none"?a():u()}}}const Ft=class Ft{constructor(t){this.data={tracks:[],annotations:[],primitives:[]},this.showAllAnnotationLabels=!1,this.isDragging=!1,this.isResponsiveWidth=t.width===void 0;const n=typeof t.container=="string"?document.querySelector(t.container):t.container;if(!n)throw new Error("Container element not found");this.containerElement=n;const s=this.isResponsiveWidth?this.calculateResponsiveWidth():t.width||800,r=t.showTrackLabels!==!1?60:10,i=t.margin||{top:20,right:10,bottom:20,left:r};this.config={container:t.container,width:s,height:t.height||300,margin:i,trackHeight:t.trackHeight||30,domain:t.domain||[0,100],zoomExtent:t.zoomExtent||[.5,20],showTrackLabels:t.showTrackLabels!==void 0?t.showTrackLabels:!0,onAnnotationClick:t.onAnnotationClick||(()=>{}),onAnnotationHover:t.onAnnotationHover||(()=>{}),onBackgroundClick:t.onBackgroundClick||(()=>{})},this.originalLeftMargin=this.config.margin.left,this.showTrackLabels=this.config.showTrackLabels,this.showTrackLabels||(this.config.margin.left=this.originalLeftMargin),this.currentTransform=be.zoomIdentity,this.initialize(),this.isResponsiveWidth&&this.setupAutoResize()}calculateResponsiveWidth(){const t=this.containerElement.clientWidth||800;return Math.max(600,t-40)}setupAutoResize(){let t;this.resizeObserver=new ResizeObserver(n=>{clearTimeout(t),t=setTimeout(()=>{this.resize()},100)}),this.resizeObserver.observe(this.containerElement)}initialize(){const t=typeof this.config.container=="string"?document.querySelector(this.config.container):this.config.container;if(!t)throw new Error("Container element not found");const n=document.body||document.documentElement;this.tooltip=be.select(n).append("div").attr("class","track-viewer-tooltip").style("position","absolute").style("background","white").style("border","1px solid #ccc").style("padding","4px 8px").style("pointer-events","none").style("display","none").style("z-index","1000"),this.svg=be.select(t).append("svg").attr("width",this.config.width).attr("height",this.config.height),this.chart=this.svg.append("g").attr("transform",`translate(${this.config.margin.left},${this.config.margin.top})`);const s=this.config.width-this.config.margin.left-this.config.margin.right;this.clipId=`clip-${Math.random().toString(36).substring(2,11)}`,this.svg.append("defs").append("clipPath").attr("id",this.clipId).append("rect").attr("x",0).attr("y",-Ft.LABEL_PADDING).attr("width",s).attr("height","100%"),this.xAxisGroup=this.chart.append("g").attr("class","x-axis"),this.clippedChart=this.chart.append("g").attr("clip-path",`url(#${this.clipId})`),this.x=be.scaleLinear().domain(this.config.domain).range([0,this.config.width-this.config.margin.left-this.config.margin.right]),this.initializeZoom(),this.createContextMenu()}initializeZoom(){const t=this.config.width-this.config.margin.left-this.config.margin.right,n=this.config.height-this.config.margin.top-this.config.margin.bottom;this.zoom=be.zoom().scaleExtent(this.config.zoomExtent).translateExtent([[0,0],[t,n]]).extent([[0,0],[t,n]]).filter(s=>(s.type==="mousedown"&&s.button===0&&(this.isDragging=!0),s.type==="mouseup"&&(this.isDragging=!1),!s.ctrlKey&&!s.button)).on("zoom",s=>{this.currentTransform=s.transform,this.drawTracks()}).on("start",s=>{s.sourceEvent&&s.sourceEvent.type==="mousedown"&&(this.clippedChart.select(".chart-background").style("cursor","grabbing"),this.svg.style("cursor","grabbing"))}).on("end",()=>{this.isDragging=!1,this.clippedChart.select(".chart-background").style("cursor","grab"),this.svg.style("cursor","")}),this.svg.call(this.zoom),this.clippedChart.insert("rect",":first-child").attr("class","chart-background").attr("width",t).attr("height",n).attr("y",-Ft.LABEL_PADDING).style("fill","transparent").style("pointer-events","all").style("cursor","grab").on("click",()=>{this.config.onBackgroundClick()})}createContextMenu(){this.contextMenuController=Ic({containerElement:this.containerElement,onSaveSVG:()=>this.saveAsSVG(),onSavePNG:()=>this.saveAsPNG(),getShowTrackLabels:()=>this.showTrackLabels,getShowAllAnnotationLabels:()=>this.showAllAnnotationLabels,onToggleTrackLabels:()=>this.toggleTrackLabels(),onToggleAllAnnotationLabels:()=>this.toggleAllAnnotationLabels()})}saveAsSVG(){const t=this.svg.node();if(!t)return;const n=t.cloneNode(!0),s=this.getInlineStyles(n),r=document.createElementNS("http://www.w3.org/2000/svg","style");r.textContent=s,n.insertBefore(r,n.firstChild),be.select(n).selectAll("[data-styled]").attr("data-styled",null);const o=new XMLSerializer().serializeToString(n),l=new Blob([o],{type:"image/svg+xml"}),a=URL.createObjectURL(l),u=document.createElement("a");u.href=a,u.download="track-viewer.svg",u.click(),URL.revokeObjectURL(a)}saveAsPNG(){const t=this.svg.node();if(!t)return;const n=t.cloneNode(!0),s=this.getInlineStyles(n),r=document.createElementNS("http://www.w3.org/2000/svg","style");r.textContent=s,n.insertBefore(r,n.firstChild),be.select(n).selectAll("[data-styled]").attr("data-styled",null);const o=new XMLSerializer().serializeToString(n),l=20,a=document.createElement("canvas"),u=a.getContext("2d");if(!u)return;const c=2;a.width=(this.config.width+l*2)*c,a.height=(this.config.height+l*2)*c,u.scale(c,c);const f=new Image,h=new Blob([o],{type:"image/svg+xml"}),g=URL.createObjectURL(h);f.onload=()=>{u.fillStyle="white",u.fillRect(0,0,this.config.width+l*2,this.config.height+l*2),u.drawImage(f,l,l),URL.revokeObjectURL(g),a.toBlob(b=>{if(b){const v=URL.createObjectURL(b),A=document.createElement("a");A.href=v,A.download="track-viewer.png",A.click(),URL.revokeObjectURL(v)}})},f.src=g}getInlineStyles(t=this.svg.node()){const n=Array.from(document.styleSheets),s=[];n.forEach(i=>{try{const o=i.cssRules||i.rules;o&&Array.from(o).forEach(l=>{if(l.selectorText){const a=l.selectorText;(a.includes(".track")||a.includes(".annotation")||a.includes(".axis")||a.includes(".primitive")||a.includes("svg")||a.includes("text")||a.includes("rect")||a.includes("path")||a.includes("circle")||a.includes("line")||a.includes("polygon"))&&s.push(l.cssText)}})}catch{}});const r=be.select(t);return r.selectAll(".track-label").each(function(){const i=this,o=window.getComputedStyle(i);i.hasAttribute("data-styled")||(i.setAttribute("data-styled","true"),i.setAttribute("style",`font-family: ${o.fontFamily}; font-size: ${o.fontSize}; fill: ${o.fill||"currentColor"};`))}),r.selectAll(".annotation, .primitive").each(function(){const i=this,o=window.getComputedStyle(i),l=i.getAttribute("data-label");if(l&&!i.querySelector("title")){const u=document.createElementNS("http://www.w3.org/2000/svg","title");u.textContent=l,i.insertBefore(u,i.firstChild),i.removeAttribute("data-label")}i.querySelectorAll("path, rect, circle, line, polygon, ellipse").forEach(u=>{const c=u,f=window.getComputedStyle(c);if(!c.hasAttribute("data-styled")){c.setAttribute("data-styled","true");const h=[],g=f.fill,b=o.fill;if(g&&g!=="none"&&g!=="rgb(0, 0, 0)"?h.push(`fill: ${g}`):b&&b!=="none"&&b!=="rgb(0, 0, 0)"&&h.push(`fill: ${b}`),f.stroke&&f.stroke!=="none"&&h.push(`stroke: ${f.stroke}`),f.strokeWidth&&h.push(`stroke-width: ${f.strokeWidth}`),f.opacity&&f.opacity!=="1"&&h.push(`opacity: ${f.opacity}`),h.length>0){const v=c.getAttribute("style")||"";c.setAttribute("style",v+" "+h.join("; ")+";")}}})}),s.join(`
-`)}toggleTrackLabels(){var n;if(this.showTrackLabels=!this.showTrackLabels,this.chart.select(".track-labels-container").style("display",this.showTrackLabels?"":"none"),this.showTrackLabels)this.updateMarginAndLayout();else{this.config.margin.left=this.originalLeftMargin,this.chart.attr("transform",`translate(${this.config.margin.left},${this.config.margin.top})`),this.x.range([0,this.config.width-this.config.margin.left-this.config.margin.right]);const s=this.config.width-this.config.margin.left-this.config.margin.right;this.svg.select("clipPath rect").attr("width",s),this.clippedChart.select(".chart-background").attr("width",s),this.drawTracks()}(n=this.contextMenuController)==null||n.updateCheckbox("Show track labels",this.showTrackLabels)}toggleAllAnnotationLabels(){var n;this.showAllAnnotationLabels=!this.showAllAnnotationLabels;const t=this.showAllAnnotationLabels;this.clippedChart.selectAll(".annotation-labels-layer .annotation-label-group").each(function(){const s=be.select(this),i=s.select(".annotation-label").attr("data-show-label");i==="never"?s.style("display","none"):i==="always"?s.style("display",""):s.style("display",t?"":"none")}),(n=this.contextMenuController)==null||n.updateCheckbox("Show all annotation labels",this.showAllAnnotationLabels)}getTrackHeight(t){return t.height||this.config.trackHeight}getTotalTracksHeight(){return this.data.tracks.reduce((t,n)=>t+this.getTrackHeight(n),0)}getTrackYPosition(t){let n=0;for(let s=0;s<t;s++)n+=this.getTrackHeight(this.data.tracks[s]);return n}updateHeight(){const t=this.getTotalTracksHeight()+this.config.margin.top+this.config.margin.bottom;this.config.height=t,this.svg.attr("height",t);const n=this.getTotalTracksHeight();this.xAxisGroup.attr("transform",`translate(0, ${n})`),this.svg.select("clipPath rect").attr("height",n+Ft.LABEL_PADDING),this.clippedChart.select(".chart-background").attr("height",n+Ft.LABEL_PADDING)}createTrackGroups(){this.trackGroups=this.clippedChart.selectAll(".track").data(this.data.tracks,n=>n.id).join("g").attr("id",n=>n.id).attr("class","track").attr("transform",(n,s)=>`translate(0, ${this.getTrackYPosition(s)})`);let t=this.chart.select(".track-labels-container");t.empty()&&(t=this.chart.append("g").attr("class","track-labels-container")),t.style("display",this.showTrackLabels?"":"none"),this.labelGroups=t.selectAll(".track-label-group").data(this.data.tracks,n=>n.id).join("g").attr("id",n=>`${n.id}-label`).attr("class","track-label-group").attr("transform",(n,s)=>`translate(0, ${this.getTrackYPosition(s)})`),this.labelGroups.selectAll(".track-label").data(n=>[n]).join("text").attr("class","track-label").attr("x",-10).attr("y",n=>this.getTrackHeight(n)/2).attr("dy","0.35em").attr("text-anchor","end").text(n=>n.label)}drawTracks(){const t=this.currentTransform.rescaleX(this.x);if(this.xAxisGroup.call(be.axisBottom(t)),this.xAxisGroup.selectAll("text").attr("class","axis-label"),!this.trackGroups)return;const n=[];this.trackGroups.each((s,r,i)=>{const o=be.select(i[r]),l=this.getTrackYPosition(r),a=this.data.annotations.filter(g=>g.trackId===s.id),c=[...(this.data.primitives||[]).filter(g=>g.trackId===s.id).map(g=>({type:"primitive",data:g})),...a.map(g=>({type:"annotation",data:g}))],f=o.selectAll("g.element").data(c,g=>g.data.id).join(g=>g.append("g"),g=>g,g=>g.remove()).attr("id",g=>g.data.id).attr("class",g=>g.type==="primitive"?`element ${g.type} ${g.data.type} ${g.data.class}`:`element ${g.type} ${g.data.type} ${g.data.classes.join(" ")}`),h=this;f.each(function(g){const b=be.select(this);b.selectAll("*").remove(),g.type==="primitive"?h.renderPrimitive(b,g.data,t,s):h.renderAnnotation(b,g.data,t,s,n,l)})}),this.renderAllLabels(n,t)}renderAnnotation(t,n,s,r,i,o=0){const l=s(n.start),a=Math.max(1,s(n.end)-s(n.start)),u=this.getTrackHeight(r),c=n.heightFraction!==void 0?u*n.heightFraction:u/2,f=u-(n.fy!==void 0?n.fy*u:u/2);let h;switch(n.type){case"arrow":h=this.renderArrow(t,l,f,a,c,n.direction);break;case"circle":h=this.renderCircle(t,l,f,c);break;case"triangle":h=this.renderTriangle(t,l,f,c);break;case"pin":h=this.renderPin(t,l,f,c);break;case"box":default:h=this.renderBox(t,l,f,a,c,n.corner_radius||0);break}t.attr("data-label",n.label),h.attr("data-annotation-id",n.id).style("cursor","pointer").style("pointer-events","all"),n.fill&&h.style("fill",n.fill),n.stroke&&h.style("stroke",n.stroke),n.opacity!==void 0&&h.style("opacity",n.opacity),h.on("mouseover",g=>{this.isDragging||(h.classed("hovered",!0),this.clippedChart.selectAll(`.annotation-label-group[data-annotation-id="${n.id}"]`).style("display","block").select(".annotation-label-background").style("display",""),n.tooltip!==void 0&&this.showTooltip(g,n,r),this.config.onAnnotationHover(n,r,g))}).on("mouseout",()=>{h.classed("hovered",!1);const g=this.showAllAnnotationLabels;this.clippedChart.selectAll(`.annotation-label-group[data-annotation-id="${n.id}"]`).each(function(){const b=be.select(this),A=b.select(".annotation-label").attr("data-show-label");A==="hover"&&g?b.style("display",""):A==="hover"?b.style("display","none"):b.style("display",""),b.select(".annotation-label-background").style("display","none")}),this.hideTooltip()}).on("click",()=>{this.config.onAnnotationClick(n,r)}),i&&n.label&&n.showLabel!=="never"&&i.push({annotation:n,trackData:r,x:l,y:f,width:a,height:c,trackY:o})}renderPrimitive(t,n,s,r){const i=this.getTrackHeight(r);let o;switch(n.type){case"horizontal-line":o=this.renderHorizontalLine(t,n,s,i);break;case"background":o=this.renderBackground(t,n,s,i);break;default:return}o.attr("class",`primitive 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0?(o=i[0],l=s(n.end)):(o=i[0],l=i[1]),t.append("rect").attr("x",o).attr("y",0).attr("width",l-o).attr("height",r)}renderBox(t,n,s,r,i,o=0){return t.append("rect").attr("x",n).attr("y",s-i/2).attr("width",r).attr("height",i).attr("rx",o).attr("ry",o)}renderArrow(t,n,s,r,i,o){const l=Math.min(r*.2,i*.5,8),a=r-l;let u;const c=s-i/2,f=s+i/2;if(o==="right")u=`
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-        L ${n+a} ${f}
-        L ${n} ${f}
+(function(oe,i){typeof exports=="object"&&typeof module<"u"?i(exports,require("vue"),require("d3")):typeof define=="function"&&define.amd?define(["exports","vue","d3"],i):(oe=typeof globalThis<"u"?globalThis:oe||self,i(oe.BGCViewerComponents={},oe.Vue,oe.d3))})(this,function(oe,i,Vn){"use strict";function Mn(n){const e=Object.create(null,{[Symbol.toStringTag]:{value:"Module"}});if(n){for(const t in n)if(t!=="default"){const r=Object.getOwnPropertyDescriptor(n,t);Object.defineProperty(e,t,r.get?r:{enumerable:!0,get:()=>n[t]})}}return e.default=n,Object.freeze(e)}const z=Mn(Vn);function jn(n){const e=document.body||document.documentElement;let t=null;const r=d=>{t=d};document.addEventListener("mousemove",r),window.getComputedStyle(n.containerElement).position==="static"&&z.select(n.containerElement).style("position","relative");const a=z.select(n.containerElement).append("div").attr("class","track-viewer-menu-button").attr("aria-label","Track viewer options menu").attr("role","button").attr("tabindex","0").style("position","absolute").style("top","8px").style("right","8px").style("width","32px").style("height","32px").style("background","white").style("border","1px solid #ccc").style("border-radius","4px").style("cursor","pointer").style("display","flex").style("align-items","center").style("justify-content","center").style("z-index","100").style("box-shadow","0 2px 4px rgba(0,0,0,0.1)").style("opacity","0").style("transition","opacity 0.2s").style("pointer-events","none").html("&#8942;").style("font-size","20px").style("line-height","1").style("user-select","none"),s=z.select(e).append("div").attr("class","track-viewer-context-menu").style("position","absolute").style("background","white").style("border","1px solid #ccc").style("border-radius","4px").style("box-shadow","0 2px 8px rgba(0,0,0,0.15)").style("padding","4px 0").style("min-width","200px").style("display","none").style("z-index","1001"),l=[{label:"Save as SVG",action:n.onSaveSVG},{label:"Save as PNG",action:n.onSavePNG},{type:"separator"},{label:"Show track labels",action:n.onToggleTrackLabels,checkbox:!0,checked:n.getShowTrackLabels},{label:"Show all annotation labels",action:n.onToggleAllAnnotationLabels,checkbox:!0,checked:n.getShowAllAnnotationLabels}];l.forEach(d=>{if(d.type==="separator")s.append("div").style("height","1px").style("background","#e0e0e0").style("margin","4px 0");else{const h=s.append("div").attr("class","track-viewer-menu-item").style("padding","8px 16px").style("cursor","pointer").style("user-select","none").style("display","flex").style("align-items","center").style("gap","8px").on("mouseenter",function(){z.select(this).style("background","#f5f5f5")}).on("mouseleave",function(){z.select(this).style("background","transparent")}).on("click",()=>{typeof d.action=="function"&&d.action(),f()});if(d.checkbox){const p=h.append("span").attr("class","menu-checkbox").style("width","16px").style("height","16px").style("border","1px solid #999").style("border-radius","3px").style("display","inline-flex").style("align-items","center").style("justify-content","center").style("flex-shrink","0");d.checkboxElement=p,d.checked&&d.checked()&&p.html("&#10003;").style("background","#2196F3").style("color","white").style("border-color","#2196F3")}h.append("span").text(d.label)}}),z.select(n.containerElement).on("mouseenter",()=>{a.style("opacity","1").style("pointer-events","all")}).on("mouseleave",()=>{s.style("display")==="none"&&a.style("opacity","0").style("pointer-events","none")});function c(){const d=a.node().getBoundingClientRect(),h=window.pageYOffset||document.documentElement.scrollTop,p=window.pageXOffset||document.documentElement.scrollLeft;s.style("display","block").style("top",`${d.bottom+h+4}px`).style("left",`${d.right+p-200}px`)}function f(){s.style("display","none");const d=n.containerElement.getBoundingClientRect();if(t){const h=t.clientX,p=t.clientY;h>=d.left&&h<=d.right&&p>=d.top&&p<=d.bottom||a.style("opacity","0").style("pointer-events","none")}}return a.on("click",d=>{d.stopPropagation(),s.style("display")==="none"?c():f()}),z.select(e).on("click.trackviewer-context",()=>{f()}),{destroy(){document.removeEventListener("mousemove",r),z.select(n.containerElement).on("mouseenter",null).on("mouseleave",null),z.select(e).on("click.trackviewer-context",null),s.remove(),a.remove()},updateCheckbox(d,h){const p=l.find(m=>m.label===d);p&&p.checkboxElement&&(h?p.checkboxElement.html("&#10003;").style("background","#2196F3").style("color","white").style("border-color","#2196F3"):p.checkboxElement.html("").style("background","white").style("border-color","#999"))},toggle(){s.style("display")==="none"?c():f()}}}const Ee=class Ee{constructor(e){this.data={tracks:[],annotations:[],primitives:[]},this.showAllAnnotationLabels=!1,this.isDragging=!1,this.isResponsiveWidth=e.width===void 0;const t=typeof e.container=="string"?document.querySelector(e.container):e.container;if(!t)throw new Error("Container element not found");this.containerElement=t;const r=this.isResponsiveWidth?this.calculateResponsiveWidth():e.width||800,o=e.showTrackLabels!==!1?60:10,a=e.margin||{top:20,right:10,bottom:20,left:o};this.config={container:e.container,width:r,height:e.height||300,margin:a,trackHeight:e.trackHeight||30,domain:e.domain||[0,100],zoomExtent:e.zoomExtent||[.5,20],showTrackLabels:e.showTrackLabels!==void 0?e.showTrackLabels:!0,onAnnotationClick:e.onAnnotationClick||(()=>{}),onAnnotationHover:e.onAnnotationHover||(()=>{}),onBackgroundClick:e.onBackgroundClick||(()=>{}),onDomainChange:e.onDomainChange||(()=>{})},this.originalLeftMargin=this.config.margin.left,this.showTrackLabels=this.config.showTrackLabels,this.showTrackLabels||(this.config.margin.left=this.originalLeftMargin),this.currentTransform=z.zoomIdentity,this.initialize(),this.isResponsiveWidth&&this.setupAutoResize()}calculateResponsiveWidth(){const e=this.containerElement.clientWidth||800;return Math.max(600,e-40)}setupAutoResize(){let e;this.resizeObserver=new ResizeObserver(t=>{clearTimeout(e),e=setTimeout(()=>{this.resize()},100)}),this.resizeObserver.observe(this.containerElement)}initialize(){const e=typeof this.config.container=="string"?document.querySelector(this.config.container):this.config.container;if(!e)throw new Error("Container element not found");const t=document.body||document.documentElement;this.tooltip=z.select(t).append("div").attr("class","track-viewer-tooltip").style("position","absolute").style("background","white").style("border","1px solid #ccc").style("padding","4px 8px").style("pointer-events","none").style("display","none").style("z-index","1000"),this.svg=z.select(e).append("svg").attr("width",this.config.width).attr("height",this.config.height),this.chart=this.svg.append("g").attr("transform",`translate(${this.config.margin.left},${this.config.margin.top})`);const r=this.config.width-this.config.margin.left-this.config.margin.right;this.clipId=`clip-${Math.random().toString(36).substring(2,11)}`,this.svg.append("defs").append("clipPath").attr("id",this.clipId).append("rect").attr("x",0).attr("y",-Ee.LABEL_PADDING).attr("width",r).attr("height","100%"),this.xAxisGroup=this.chart.append("g").attr("class","x-axis"),this.clippedChart=this.chart.append("g").attr("clip-path",`url(#${this.clipId})`),this.x=z.scaleLinear().domain(this.config.domain).range([0,this.config.width-this.config.margin.left-this.config.margin.right]),this.initializeZoom(),this.createContextMenu()}initializeZoom(){const e=this.config.width-this.config.margin.left-this.config.margin.right,t=this.config.height-this.config.margin.top-this.config.margin.bottom;this.zoom=z.zoom().scaleExtent(this.config.zoomExtent).translateExtent([[0,0],[e,t]]).extent([[0,0],[e,t]]).filter(r=>(r.type==="mousedown"&&r.button===0&&(this.isDragging=!0),r.type==="mouseup"&&(this.isDragging=!1),!r.ctrlKey&&!r.button)).on("zoom",r=>{this.currentTransform=r.transform,this.drawTracks();const o=this.getCurrentDomain();this.config.onDomainChange(o)}).on("start",r=>{r.sourceEvent&&r.sourceEvent.type==="mousedown"&&(this.clippedChart.select(".chart-background").style("cursor","grabbing"),this.svg.style("cursor","grabbing"))}).on("end",()=>{this.isDragging=!1,this.clippedChart.select(".chart-background").style("cursor","grab"),this.svg.style("cursor","")}),this.svg.call(this.zoom),this.clippedChart.insert("rect",":first-child").attr("class","chart-background").attr("width",e).attr("height",t).attr("y",-Ee.LABEL_PADDING).style("fill","transparent").style("pointer-events","all").style("cursor","grab").on("click",()=>{this.config.onBackgroundClick()})}createContextMenu(){this.contextMenuController=jn({containerElement:this.containerElement,onSaveSVG:()=>this.saveAsSVG(),onSavePNG:()=>this.saveAsPNG(),getShowTrackLabels:()=>this.showTrackLabels,getShowAllAnnotationLabels:()=>this.showAllAnnotationLabels,onToggleTrackLabels:()=>this.toggleTrackLabels(),onToggleAllAnnotationLabels:()=>this.toggleAllAnnotationLabels()})}saveAsSVG(){const e=this.svg.node();if(!e)return;const t=e.cloneNode(!0),r=this.getInlineStyles(t),o=document.createElementNS("http://www.w3.org/2000/svg","style");o.textContent=r,t.insertBefore(o,t.firstChild),z.select(t).selectAll("[data-styled]").attr("data-styled",null);const s=new XMLSerializer().serializeToString(t),l=new Blob([s],{type:"image/svg+xml"}),c=URL.createObjectURL(l),f=document.createElement("a");f.href=c,f.download="track-viewer.svg",f.click(),URL.revokeObjectURL(c)}saveAsPNG(){const e=this.svg.node();if(!e)return;const t=e.cloneNode(!0),r=this.getInlineStyles(t),o=document.createElementNS("http://www.w3.org/2000/svg","style");o.textContent=r,t.insertBefore(o,t.firstChild),z.select(t).selectAll("[data-styled]").attr("data-styled",null);const s=new XMLSerializer().serializeToString(t),l=20,c=document.createElement("canvas"),f=c.getContext("2d");if(!f)return;const d=2;c.width=(this.config.width+l*2)*d,c.height=(this.config.height+l*2)*d,f.scale(d,d);const h=new Image,p=new Blob([s],{type:"image/svg+xml"}),m=URL.createObjectURL(p);h.onload=()=>{f.fillStyle="white",f.fillRect(0,0,this.config.width+l*2,this.config.height+l*2),f.drawImage(h,l,l),URL.revokeObjectURL(m),c.toBlob(E=>{if(E){const O=URL.createObjectURL(E),I=document.createElement("a");I.href=O,I.download="track-viewer.png",I.click(),URL.revokeObjectURL(O)}})},h.src=m}getInlineStyles(e=this.svg.node()){const t=Array.from(document.styleSheets),r=[];t.forEach(a=>{try{const s=a.cssRules||a.rules;s&&Array.from(s).forEach(l=>{if(l.selectorText){const c=l.selectorText;(c.includes(".track")||c.includes(".annotation")||c.includes(".axis")||c.includes(".primitive")||c.includes("svg")||c.includes("text")||c.includes("rect")||c.includes("path")||c.includes("circle")||c.includes("line")||c.includes("polygon"))&&r.push(l.cssText)}})}catch{}});const o=z.select(e);return o.selectAll(".track-label").each(function(){const a=this,s=window.getComputedStyle(a);a.hasAttribute("data-styled")||(a.setAttribute("data-styled","true"),a.setAttribute("style",`font-family: ${s.fontFamily}; font-size: ${s.fontSize}; fill: ${s.fill||"currentColor"};`))}),o.selectAll(".annotation, .primitive").each(function(){const a=this,s=window.getComputedStyle(a),l=a.getAttribute("data-label");if(l&&!a.querySelector("title")){const f=document.createElementNS("http://www.w3.org/2000/svg","title");f.textContent=l,a.insertBefore(f,a.firstChild),a.removeAttribute("data-label")}a.querySelectorAll("path, rect, circle, line, polygon, ellipse").forEach(f=>{const d=f,h=window.getComputedStyle(d);if(!d.hasAttribute("data-styled")){d.setAttribute("data-styled","true");const p=[],m=h.fill,E=s.fill;if(m&&m!=="none"&&m!=="rgb(0, 0, 0)"?p.push(`fill: ${m}`):E&&E!=="none"&&E!=="rgb(0, 0, 0)"&&p.push(`fill: ${E}`),h.stroke&&h.stroke!=="none"&&p.push(`stroke: ${h.stroke}`),h.strokeWidth&&p.push(`stroke-width: ${h.strokeWidth}`),h.opacity&&h.opacity!=="1"&&p.push(`opacity: ${h.opacity}`),p.length>0){const O=d.getAttribute("style")||"";d.setAttribute("style",O+" "+p.join("; ")+";")}}})}),r.join(`
+`)}toggleTrackLabels(){var t;if(this.showTrackLabels=!this.showTrackLabels,this.chart.select(".track-labels-container").style("display",this.showTrackLabels?"":"none"),this.showTrackLabels)this.updateMarginAndLayout();else{this.config.margin.left=this.originalLeftMargin,this.chart.attr("transform",`translate(${this.config.margin.left},${this.config.margin.top})`),this.x.range([0,this.config.width-this.config.margin.left-this.config.margin.right]);const r=this.config.width-this.config.margin.left-this.config.margin.right;this.svg.select("clipPath rect").attr("width",r),this.clippedChart.select(".chart-background").attr("width",r),this.drawTracks()}(t=this.contextMenuController)==null||t.updateCheckbox("Show track labels",this.showTrackLabels)}toggleAllAnnotationLabels(){var t;this.showAllAnnotationLabels=!this.showAllAnnotationLabels;const e=this.showAllAnnotationLabels;this.clippedChart.selectAll(".annotation-labels-layer .annotation-label-group").each(function(){const r=z.select(this),a=r.select(".annotation-label").attr("data-show-label");a==="never"?r.style("display","none"):a==="always"?r.style("display",""):r.style("display",e?"":"none")}),(t=this.contextMenuController)==null||t.updateCheckbox("Show all annotation labels",this.showAllAnnotationLabels)}getTrackHeight(e){return e.height||this.config.trackHeight}getTotalTracksHeight(){return this.data.tracks.reduce((e,t)=>e+this.getTrackHeight(t),0)}getTrackYPosition(e){let t=0;for(let r=0;r<e;r++)t+=this.getTrackHeight(this.data.tracks[r]);return t}updateHeight(){const e=this.getTotalTracksHeight()+this.config.margin.top+this.config.margin.bottom;this.config.height=e,this.svg.attr("height",e);const t=this.getTotalTracksHeight();this.xAxisGroup.attr("transform",`translate(0, ${t})`),this.svg.select("clipPath rect").attr("height",t+Ee.LABEL_PADDING),this.clippedChart.select(".chart-background").attr("height",t+Ee.LABEL_PADDING)}createTrackGroups(){this.trackGroups=this.clippedChart.selectAll(".track").data(this.data.tracks,t=>t.id).join("g").attr("id",t=>t.id).attr("class","track").attr("transform",(t,r)=>`translate(0, ${this.getTrackYPosition(r)})`);let e=this.chart.select(".track-labels-container");e.empty()&&(e=this.chart.append("g").attr("class","track-labels-container")),e.style("display",this.showTrackLabels?"":"none"),this.labelGroups=e.selectAll(".track-label-group").data(this.data.tracks,t=>t.id).join("g").attr("id",t=>`${t.id}-label`).attr("class","track-label-group").attr("transform",(t,r)=>`translate(0, ${this.getTrackYPosition(r)})`),this.labelGroups.selectAll(".track-label").data(t=>[t]).join("text").attr("class","track-label").attr("x",-10).attr("y",t=>this.getTrackHeight(t)/2).attr("dy","0.35em").attr("text-anchor","end").text(t=>t.label)}drawTracks(){const e=this.currentTransform.rescaleX(this.x);if(this.xAxisGroup.call(z.axisBottom(e)),this.xAxisGroup.selectAll("text").attr("class","axis-label"),!this.trackGroups)return;const t=[];this.trackGroups.each((r,o,a)=>{const s=z.select(a[o]),l=this.getTrackYPosition(o),c=this.data.annotations.filter(m=>m.trackId===r.id),d=[...(this.data.primitives||[]).filter(m=>m.trackId===r.id).map(m=>({type:"primitive",data:m})),...c.map(m=>({type:"annotation",data:m}))],h=s.selectAll("g.element").data(d,m=>m.data.id).join(m=>m.append("g"),m=>m,m=>m.remove()).attr("id",m=>m.data.id).attr("class",m=>m.type==="primitive"?`element ${m.type} ${m.data.type} ${m.data.class}`:`element ${m.type} ${m.data.type} ${m.data.classes.join(" ")}`),p=this;h.each(function(m){const E=z.select(this);E.selectAll("*").remove(),m.type==="primitive"?p.renderPrimitive(E,m.data,e,r):p.renderAnnotation(E,m.data,e,r,t,l)})}),this.renderAllLabels(t,e)}renderAnnotation(e,t,r,o,a,s=0){const l=r(t.start),c=Math.max(1,r(t.end)-r(t.start)),f=this.getTrackHeight(o),d=t.heightFraction!==void 0?f*t.heightFraction:f/2,h=f-(t.fy!==void 0?t.fy*f:f/2);let p;switch(t.type){case"arrow":p=this.renderArrow(e,l,h,c,d,t.direction);break;case"circle":p=this.renderCircle(e,l,h,d);break;case"triangle":p=this.renderTriangle(e,l,h,d);break;case"pin":p=this.renderPin(e,l,h,d);break;case"box":default:p=this.renderBox(e,l,h,c,d,t.corner_radius||0);break}e.attr("data-label",t.label),p.attr("data-annotation-id",t.id).style("cursor","pointer").style("pointer-events","all"),t.fill&&p.style("fill",t.fill),t.stroke&&p.style("stroke",t.stroke),t.opacity!==void 0&&p.style("opacity",t.opacity),p.on("mouseover",m=>{this.isDragging||(p.classed("hovered",!0),this.clippedChart.selectAll(`.annotation-label-group[data-annotation-id="${t.id}"]`).style("display","block").select(".annotation-label-background").style("display",""),t.tooltip!==void 0&&this.showTooltip(m,t,o),this.config.onAnnotationHover(t,o,m))}).on("mouseout",()=>{p.classed("hovered",!1);const m=this.showAllAnnotationLabels;this.clippedChart.selectAll(`.annotation-label-group[data-annotation-id="${t.id}"]`).each(function(){const E=z.select(this),I=E.select(".annotation-label").attr("data-show-label");I==="hover"&&m?E.style("display",""):I==="hover"?E.style("display","none"):E.style("display",""),E.select(".annotation-label-background").style("display","none")}),this.hideTooltip()}).on("click",()=>{this.config.onAnnotationClick(t,o)}),a&&t.label&&t.showLabel!=="never"&&a.push({annotation:t,trackData:o,x:l,y:h,width:c,height:d,trackY:s})}renderPrimitive(e,t,r,o){const a=this.getTrackHeight(o);let s;switch(t.type){case"horizontal-line":s=this.renderHorizontalLine(e,t,r,a);break;case"background":s=this.renderBackground(e,t,r,a);break;default:return}s.attr("class",`primitive ${t.class}`),t.stroke?s.style("stroke",t.stroke):t.type==="horizontal-line"&&s.style("stroke","currentColor"),t.fill?s.style("fill",t.fill):t.type==="background"&&s.style("fill","none"),t.opacity!==void 0&&s.style("opacity",t.opacity)}renderHorizontalLine(e,t,r,o){const a=r.range();let s,l;t.start!==void 0&&t.end!==void 0?(s=r(t.start),l=r(t.end)):t.start!==void 0&&t.end===void 0?(s=r(t.start),l=a[1]):t.start===void 0&&t.end!==void 0?(s=a[0],l=r(t.end)):(s=a[0],l=a[1]);const c=o-(t.fy!==void 0?t.fy*o:o/2),f=Math.round(c)+.5;return e.append("line").attr("x1",s).attr("x2",l).attr("y1",f).attr("y2",f).style("stroke-width",1).style("shape-rendering","crispEdges")}renderBackground(e,t,r,o){const a=r.range();let s,l;return t.start!==void 0&&t.end!==void 0?(s=r(t.start),l=r(t.end)):t.start!==void 0&&t.end===void 0?(s=r(t.start),l=a[1]):t.start===void 0&&t.end!==void 0?(s=a[0],l=r(t.end)):(s=a[0],l=a[1]),e.append("rect").attr("x",s).attr("y",0).attr("width",l-s).attr("height",o)}renderBox(e,t,r,o,a,s=0){return e.append("rect").attr("x",t).attr("y",r-a/2).attr("width",o).attr("height",a).attr("rx",s).attr("ry",s)}renderArrow(e,t,r,o,a,s){const l=Math.min(o*.2,a*.5,8),c=o-l;let f;const d=r-a/2,h=r+a/2;if(s==="right")f=`
+        M ${t} ${d}
+        L ${t+c} ${d}
+        L ${t+o} ${r}
+        L ${t+c} ${h}
+        L ${t} ${h}
         Z
-      `;else if(o==="left")u=`
-        M ${n} ${s}
-        L ${n+l} ${c}
-        L ${n+r} ${c}
-        L ${n+r} ${f}
-        L ${n+l} ${f}
+      `;else if(s==="left")f=`
+        M ${t} ${r}
+        L ${t+l} ${d}
+        L ${t+o} ${d}
+        L ${t+o} ${h}
+        L ${t+l} ${h}
         Z
-      `;else{const h=Math.min(r*.1,i*.3,4);u=`
-        M ${n+h} ${c}
-        L ${n+r-h} ${c}
-        L ${n+r} ${s}
-        L ${n+r-h} ${f}
-        L ${n+h} ${f}
-        L ${n} ${s}
+      `;else{const p=Math.min(o*.1,a*.3,4);f=`
+        M ${t+p} ${d}
+        L ${t+o-p} ${d}
+        L ${t+o} ${r}
+        L ${t+o-p} ${h}
+        L ${t+p} ${h}
+        L ${t} ${r}
         Z
-      `}return t.append("path").attr("d",u)}renderCircle(t,n,s,r){return t.append("circle").attr("cx",n).attr("cy",s).attr("r",r/2).attr("class","annotation-marker")}renderTriangle(t,n,s,r=.5){const i=r*.8,o=[[n-i/2,s+r],[n,s],[n+i/2,s+r]].map(l=>l.join(",")).join(" ");return t.append("polygon").attr("points",o).attr("class","annotation-triangle")}renderPin(t,n,s,r){const i=t.append("g").attr("class","annotation-pin");return i.append("line").attr("x1",n).attr("y1",s).attr("x2",n).attr("y2",s-r).attr("stroke","black").attr("class","annotation-pin-line"),i.append("circle").attr("cx",n).attr("cy",s-r).attr("r",3).attr("class","annotation-pin-head"),i}renderAnnotationLabel(t,n,s,r,i,o){const l=n.showLabel||"hover";if(!n.label)return;const a=n.labelPosition||"above";let u,c,f="middle";n.type==="circle"||n.type==="triangle"||n.type==="pin"?(u=s,a==="above"?n.type==="pin"?c=r-o-8:c=r-o/2-2:c=r):(u=s+i/2,a==="above"?c=r-o/2-8:c=r);const h=t.append("text").attr("x",u).attr("y",c).attr("dy","0.35em").attr("text-anchor",f).attr("class","annotation-label").attr("data-annotation-id",n.id).attr("data-show-label",l).style("fill","currentColor").text(n.label);if(l==="hover"){const g=h.node();if(g&&typeof g.getBBox=="function")try{const b=g.getBBox(),v=0;t.insert("rect","text").attr("x",b.x-v).attr("y",b.y-v).attr("width",b.width+v*2).attr("height",b.height+v*2).attr("rx",2).attr("ry",2).attr("class","annotation-label-background").style("fill","white").style("opacity","0.8").style("display","none")}catch{}}l==="always"?t.style("display",""):l==="never"?t.style("display","none"):t.style("display",this.showAllAnnotationLabels?"":"none")}renderAllLabels(t,n){let s=this.clippedChart.select(".annotation-labels-layer");s.empty()&&(s=this.clippedChart.append("g").attr("class","annotation-labels-layer"));const 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0&&(Qe[e]=n)});function mn(n){const e=new we(n),t=Et(we.prototype.request,e);return u.extend(t,we.prototype,e,{allOwnKeys:!0}),u.extend(t,e,null,{allOwnKeys:!0}),t.create=function(o){return mn(be(n,o))},t}const v=mn(Ie);v.Axios=we,v.CanceledError=Ve,v.CancelToken=Ti,v.isCancel=Jt,v.VERSION=pt,v.toFormData=We,v.AxiosError=C,v.Cancel=v.CanceledError,v.all=function(e){return Promise.all(e)},v.spread=xi,v.isAxiosError=Oi,v.mergeConfig=be,v.AxiosHeaders=Y,v.formToJSON=n=>Wt(u.isHTMLForm(n)?new FormData(n):n),v.getAdapter=hn.getAdapter,v.HttpStatusCode=Qe,v.default=v;const{Axios:Ki,AxiosError:Xi,CanceledError:Qi,isCancel:Yi,CancelToken:Zi,VERSION:ea,all:ta,Cancel:na,isAxiosError:ra,spread:oa,toFormData:sa,AxiosHeaders:ia,HttpStatusCode:aa,formToJSON:la,getAdapter:ca,mergeConfig:da,create:ua}=v;class gn{}function Ni(n){const e=n.split(`
+`),t={};for(let r=1;r<e.length;r++){const o=e[r].trim();if(o){const[a,s]=o.split(",");a&&s&&(t[a]=s)}}return t}async function yn(n="/domain-colors.csv"){try{const e="/",t=e.endsWith("/")?e:e+"/",r=new URL(t+n.replace(/^\//,""),window.location.origin).href,o=await fetch(r);if(!o.ok)return console.warn(`Failed to load PFAM color mapping from ${r}: ${o.status} ${o.statusText}`),{};const a=await o.text();return Ni(a)}catch(e){return console.warn("Failed to load PFAM color mapping:",e),{}}}class Li extends gn{constructor(e={}){super();const t=e.baseURL||"";this.axiosInstance=v.create({baseURL:t})}async loadEntry(e){const t=await this.axiosInstance.post("/api/load-entry",{id:e});return{entryId:e,recordId:t.data.record_id,filename:t.data.filename,fileMetadata:t.data.file_metadata,recordInfo:{description:t.data.record_info.description}}}async getRecords(){throw new Error("getRecords() is not yet implemented in the API")}async searchRecords(e,t=1,r=20){const o={page:t,per_page:r};e.trim()&&(o.search=e.trim());const a=await this.axiosInstance.get("/api/database-entries",{params:o});return{records:a.data.entries.map(l=>({recordId:l.record_id,filename:l.filename,recordInfo:{description:l.description},entryId:l.id,organism:l.organism,products:l.products,clusterTypes:l.cluster_types,featureCount:l.feature_count,regionCount:l.region_count})),total:a.data.total,totalPages:a.data.total_pages,currentPage:a.data.page}}async getRegions(e){const t=e.includes(":")?e.split(":")[1]:e;return(await this.axiosInstance.get(`/api/records/${t}/regions`)).data}async getRecordFeatures(e){const t=e.includes(":")?e.split(":")[1]:e;return(await this.axiosInstance.get(`/api/records/${t}/features`)).data}async getRegionFeatures(e,t){const r=e.includes(":")?e.split(":")[1]:e;return(await this.axiosInstance.get(`/api/records/${r}/regions/${t}/features`)).data}async getPfamColorMap(){return yn()}async getMiBIGEntries(e,t,r="1"){const o=e.includes(":")?e.split(":")[1]:e;return(await this.axiosInstance.get(`/api/records/${o}/mibig-entries/${t}`,{params:{region:r}})).data}async getTFBSHits(e,t="1"){const r=e.includes(":")?e.split(":")[1]:e;return(await this.axiosInstance.get(`/api/records/${r}/tfbs-hits`,{params:{region:t}})).data}async getTTACodons(e){const t=e.includes(":")?e.split(":")[1]:e;return(await this.axiosInstance.get(`/api/records/${t}/tta-codons`)).data}async getResistanceFeatures(e){const t=e.includes(":")?e.split(":")[1]:e;return(await this.axiosInstance.get(`/api/records/${t}/resistance`)).data}}class Bi extends gn{constructor(e={}){super(),this.records=e.records||[],this.pfamColorMap=e.pfamColorMap||{},this.fileMetadata={}}async loadFromFile(e){let t,r;if(e instanceof File){const o=await e.text();t=JSON.parse(o),r=e.name}else if(typeof e=="string")t=await(await fetch(e)).json(),r=e.split("/").pop()||"unknown";else throw new Error("Invalid file parameter");this.parseAntiSMASHData(t,r)}parseAntiSMASHData(e,t){const r=e.records?e.records:[e],o=e.input_file||t;r.forEach(a=>{const s=a.id;a._originalId=s,a._sourceFilename=t,a._inputFile=o,a.id=`${t}:${s}`}),this.records=[...this.records,...r],e.version&&!this.fileMetadata.version&&(this.fileMetadata.version=e.version),e.input_file&&(this.fileMetadata.input_files||(this.fileMetadata.input_files=[]),Array.isArray(this.fileMetadata.input_files)&&this.fileMetadata.input_files.push(e.input_file))}async loadEntry(e){let t=this.records.find(o=>o.id===e);if(!t&&e.includes(":")){const o=e.split(":")[1];t=this.records.find(a=>a.id===o||a._originalId===o)}if(t||(t=this.records.find(o=>o._originalId===e)),!t)throw new Error(`Record ${e} not found`);let r=t._sourceFilename;return!r&&e.includes(":")&&(r=e.split(":")[0]),{entryId:t.id,recordId:t._originalId||t.id,filename:r||"unknown",fileMetadata:{...this.fileMetadata,input_file:t._inputFile||"unknown"},recordInfo:{description:t.description||""}}}async getRecords(){return this.records.map(e=>({recordId:e.id,filename:e._sourceFilename||"unknown.json",recordInfo:{description:e.description||e.definition||""}}))}async searchRecords(e,t=1,r=20){let o=this.records;if(e.trim()){const s=e.toLowerCase().split(/\s+/).filter(l=>l.length>0);o=this.records.filter(l=>{const f=this.extractLeafValues(l).join(" ");return s.every(d=>f.includes(d))})}const a=o.map(s=>{let l=0;return s.regions&&Array.isArray(s.regions)?l=s.regions.length:s.features&&Array.isArray(s.features)&&(l=s.features.filter(c=>c.type==="region").length),{entryId:s.id,recordId:s._originalId||s.id.split(":")[1],filename:s._sourceFilename||"unknown.json",recordInfo:{description:s.description||s.definition||""},featureCount:(s.features||[]).length,regionCount:l}});return{records:a,total:a.length,totalPages:Math.ceil(a.length/r),currentPage:1}}extractLeafValues(e,t=[]){if(e==null)return t;if(typeof e=="string"||typeof e=="number"||typeof e=="boolean")return t.push(String(e).toLowerCase()),t;if(Array.isArray(e)){for(const r of e)this.extractLeafValues(r,t);return t}if(typeof e=="object"){for(const r of Object.values(e))this.extractLeafValues(r,t);return t}return t}async getRegions(e){const t=this.findRecord(e);if(!t)throw new Error(`Record not found: ${e}`);const r=[];return(t.features||[]).filter(s=>s.type==="region").forEach((s,l)=>{var d,h,p;const c=this.parseLocation(s.location),f=parseInt((h=(d=s.qualifiers)==null?void 0:d.region_number)==null?void 0:h[0])||l+1;r.push({id:`region_${f}`,region_number:f,product:((p=s.qualifiers)==null?void 0:p.product)||[],start:c==null?void 0:c.start,end:c==null?void 0:c.end})}),{regions:r}}async getRecordFeatures(e){const t=this.findRecord(e);if(!t)throw new Error(`Record not found: ${e}`);return{features:t.features||[]}}async getRegionFeatures(e,t){const r=this.findRecord(e);if(!r)throw new Error(`Record not found: ${e}`);const o=r.features||[],a=t.replace("region_",""),s=o.find(f=>{var h,p;if(f.type!=="region")return!1;const d=(p=(h=f.qualifiers)==null?void 0:h.region_number)==null?void 0:p[0];return String(d)===a});if(!s)throw new Error(`Region not found: ${t}`);const l=this.parseLocation(s.location);if(!l)throw new Error(`Invalid region location: ${s.location}`);return{features:o.filter(f=>{const d=this.parseLocation(f.location);return d?!(d.end<l.start||d.start>l.end):!1}),region_boundaries:{start:l.start,end:l.end}}}async getPfamColorMap(){return Object.keys(this.pfamColorMap).length>0?this.pfamColorMap:(this.pfamColorMap=await yn(),this.pfamColorMap)}setPfamColorMap(e){this.pfamColorMap=e}findRecord(e){return this.records.find((t,r)=>(t.id||`record-${r}`)===e)}async getMiBIGEntries(e,t,r="1"){const o=this.findRecord(e);if(!o)throw new Error(`Record not found: ${e}`);const c=(((o.modules||{})["antismash.modules.clusterblast"]||{}).knowncluster||{}).mibig_entries||{};if(!c[r])return{record_id:e,locus_tag:t,region:r,count:0,entries:[]};const f=c[r][t]||[];if(f.length===0)return{record_id:e,locus_tag:t,region:r,count:0,entries:[]};const d=f.map(h=>({mibig_protein:h[0],description:h[1],mibig_cluster:h[2],rank:h[3],mibig_product:h[4],percent_identity:h[5],blast_score:h[6],percent_coverage:h[7],evalue:h[8]}));return{record_id:e,locus_tag:t,region:r,count:d.length,entries:d}}async getTFBSHits(e,t="1"){const r=this.findRecord(e);if(!r)throw new Error(`Record not found: ${e}`);const s=((r.modules||{})["antismash.modules.tfbs_finder"]||{}).hits_by_region||{};if(!s[t])return{record_id:e,region:t,count:0,hits:[]};const l=s[t]||[];return{record_id:e,region:t,count:l.length,hits:l}}async getTTACodons(e){const t=this.findRecord(e);if(!t)throw new Error(`Record not found: ${e}`);const a=((t.modules||{})["antismash.modules.tta"]||{})["TTA codons"]||[];return{record_id:e,count:a.length,codons:a}}async getResistanceFeatures(e){const t=this.findRecord(e);if(!t)throw new Error(`Record not found: ${e}`);const l=((((t.modules||{})["antismash.detection.genefunctions"]||{}).tools||{}).resist||{}).best_hits||{},c=[];for(const[f,d]of Object.entries(l))c.push({locus_tag:f,...d});return{record_id:e,count:c.length,features:c}}parseLocation(e){if(!e)return null;const t=e.match(/\[<?(\d+):>?(\d+)\](?:\(([+-])\))?/);return t?{start:parseInt(t[1]),end:parseInt(t[2]),strand:t[3]||null}:null}}const bn=i.defineCustomElement(Co),wn=i.defineCustomElement(wt);customElements.define("bgc-region-viewer-container",bn),customElements.define("bgc-region-viewer",wn),oe.BGCViewerAPIProvider=Li,oe.JSONFileProvider=Bi,oe.RegionViewer=wn,oe.RegionViewerContainer=bn,oe.TrackViewer=qe,Object.defineProperty(oe,Symbol.toStringTag,{value:"Module"})});