@meaningfully/core 0.1.6 → 0.1.8

package/dist/Meaningfully.d.ts

@@ -53,6 +53,10 @@ export declare class MeaningfullyAPI {
     setMaskedSettings(newSettings: Settings): Promise<{
         success: boolean;
     }>;
+    getAvailableModelOptions(): Promise<{
+        availableModelOptions: Record<string, string[]>;
+        allModelOptions: Record<string, string[]>;
+    }>;
     deletePostgresVectorStore(projectName: string): Promise<void>;
     deletePostgresIndexStore(projectName: string): Promise<void>;
     deletePostgresDocStore(projectName: string): Promise<void>;

package/dist/Meaningfully.d.ts.map

@@ -1 +1 @@
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package/dist/Meaningfully.js

@@ -251,6 +251,38 @@ export class MeaningfullyAPI {
         };
         return this.metadataManager.setSettings(settings);
     }
+    async getAvailableModelOptions() {
+        const settings = await this.metadataManager.getSettings();
+        // Define all possible model options
+        const allModelOptions = {
+            "openai": ["text-embedding-3-small", "text-embedding-3-large"],
+            "azure": ["text-embedding-3-small", "text-embedding-3-large"],
+            "ollama": ["mxbai-embed-large", "nomic-embed-text"],
+            "mistral": ["mistral-embed"],
+            "gemini": ["gemini-embedding-001"]
+        };
+        // Filter based on which settings are configured
+        const availableModelOptions = {};
+        if (settings.openAIKey) {
+            availableModelOptions.openai = allModelOptions.openai;
+        }
+        if (settings.azureOpenAIKey && settings.azureOpenAIEndpoint) {
+            availableModelOptions.azure = allModelOptions.azure;
+        }
+        if (settings.oLlamaBaseURL) {
+            availableModelOptions.ollama = allModelOptions.ollama;
+        }
+        if (settings.mistralApiKey) {
+            availableModelOptions.mistral = allModelOptions.mistral;
+        }
+        if (settings.geminiApiKey) {
+            availableModelOptions.gemini = allModelOptions.gemini;
+        }
+        return {
+            availableModelOptions,
+            allModelOptions
+        };
+    }
     // these should be moved to another file, just because they're too low-level for this one.
     async deletePostgresVectorStore(projectName) {
         if (this.clients.postgresClient) {

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package/dist/MetadataManager.d.ts

@@ -1,19 +1,7 @@
 import type { DocumentSetMetadata, Settings } from './types/index.js';
+import type { Knex } from 'knex';
 export declare abstract class MetadataManager {
-    protected queries: {
-        createDocumentSetsTable: string;
-        createSettingsTable: string;
-        insertDocumentSet: string;
-        selectDocumentSet: string;
-        selectDocumentSets: string;
-        countDocumentSets: string;
-        updateDocumentCount: string;
-        deleteDocumentSet: string;
-        selectSettings: string;
-        upsertSettings: string;
-    };
-    protected abstract runQuery<T>(query: string, params?: any[]): Promise<T[]>;
-    protected abstract runQuerySingle<T>(query: string, params?: any[]): Promise<T | null>;
+    protected abstract knex: Knex;
     protected abstract initializeDatabase(): Promise<void>;
     protected abstract close(): void;
     addDocumentSet(metadata: Omit<DocumentSetMetadata, 'documentSetId'>): Promise<number>;

package/dist/MetadataManager.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"MetadataManager.d.ts","sourceRoot":"","sources":["../src/MetadataManager.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,mBAAmB,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AAEtE,8BAAsB,eAAe;IACnC,SAAS,CAAC,OAAO;;;;;;;;;;;MAmDf;IAEF,SAAS,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,GAAG,EAAE,GAAG,OAAO,CAAC,CAAC,EAAE,CAAC;IAC3E,SAAS,CAAC,QAAQ,CAAC,cAAc,CAAC,CAAC,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,GAAG,EAAE,GAAG,OAAO,CAAC,CAAC,GAAG,IAAI,CAAC;IACtF,SAAS,CAAC,QAAQ,CAAC,kBAAkB,IAAI,OAAO,CAAC,IAAI,CAAC;IACtD,SAAS,CAAC,QAAQ,CAAC,KAAK,IAAI,IAAI;IAE1B,cAAc,CAAC,QAAQ,EAAE,IAAI,CAAC,mBAAmB,EAAE,eAAe,CAAC,GAAG,OAAO,CAAC,MAAM,CAAC;IAUrF,cAAc,CAAC,aAAa,EAAE,MAAM,GAAG,OAAO,CAAC,mBAAmB,GAAG,IAAI,CAAC;IAoB1E,eAAe,CAAC,IAAI,GAAE,MAAU,EAAE,QAAQ,GAAE,MAAW,GAAG,OAAO,CAAC;QAAE,SAAS,EAAE,mBAAmB,EAAE,CAAC;QAAC,KAAK,EAAE,MAAM,CAAA;KAAE,CAAC;IAwBtH,mBAAmB,CAAC,aAAa,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAIxE,iBAAiB,CAAC,aAAa,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAIvD,WAAW,IAAI,OAAO,CAAC,QAAQ,CAAC;IAehC,WAAW,CAAC,QAAQ,EAAE,QAAQ,GAAG,OAAO,CAAC;QAAE,OAAO,EAAE,OAAO,CAAA;KAAE,CAAC;CAMrE"}
+{"version":3,"file":"MetadataManager.d.ts","sourceRoot":"","sources":["../src/MetadataManager.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,mBAAmB,EAAE,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AACtE,OAAO,KAAK,EAAE,IAAI,EAAE,MAAM,MAAM,CAAC;AAEjC,8BAAsB,eAAe;IACnC,SAAS,CAAC,QAAQ,CAAC,IAAI,EAAE,IAAI,CAAC;IAE9B,SAAS,CAAC,QAAQ,CAAC,kBAAkB,IAAI,OAAO,CAAC,IAAI,CAAC;IACtD,SAAS,CAAC,QAAQ,CAAC,KAAK,IAAI,IAAI;IAE1B,cAAc,CAAC,QAAQ,EAAE,IAAI,CAAC,mBAAmB,EAAE,eAAe,CAAC,GAAG,OAAO,CAAC,MAAM,CAAC;IAarF,cAAc,CAAC,aAAa,EAAE,MAAM,GAAG,OAAO,CAAC,mBAAmB,GAAG,IAAI,CAAC;IAgB1E,eAAe,CAAC,IAAI,GAAE,MAAU,EAAE,QAAQ,GAAE,MAAW,GAAG,OAAO,CAAC;QAAE,SAAS,EAAE,mBAAmB,EAAE,CAAC;QAAC,KAAK,EAAE,MAAM,CAAA;KAAE,CAAC;IAuBtH,mBAAmB,CAAC,aAAa,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAMxE,iBAAiB,CAAC,aAAa,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAMvD,WAAW,IAAI,OAAO,CAAC,QAAQ,CAAC;IAkBhC,WAAW,CAAC,QAAQ,EAAE,QAAQ,GAAG,OAAO,CAAC;QAAE,OAAO,EAAE,OAAO,CAAA;KAAE,CAAC;CAWrE"}

package/dist/MetadataManager.js

@@ -1,67 +1,19 @@
 export class MetadataManager {
-    queries = {
-        /*
-        Note: RETURNING on non-select/non-create statements is important for compatibility between SQLite and PostgreSQL.
-        (Without it, better-sqlite would demand to use run() instead of all() or get(), which would break the abstraction.)
-        */
-        createDocumentSetsTable: `
-      CREATE TABLE IF NOT EXISTS document_sets (
-        set_id SERIAL PRIMARY KEY,
-        name TEXT NOT NULL UNIQUE,
-        upload_date TIMESTAMP NOT NULL,
-        parameters TEXT NOT NULL,
-        total_documents INTEGER NOT NULL DEFAULT 0
-      );
-    `,
-        createSettingsTable: `
-      CREATE TABLE IF NOT EXISTS meaningfully_settings (
-        settings_id SERIAL PRIMARY KEY,
-        settings TEXT NOT NULL
-      );
-    `,
-        insertDocumentSet: `
-      INSERT INTO document_sets (name, upload_date, parameters, total_documents)
-      VALUES ($1, $2, $3, $4) RETURNING set_id
-    `,
-        selectDocumentSet: `
-      SELECT * FROM document_sets WHERE set_id = $1
-    `,
-        selectDocumentSets: `
-      SELECT * FROM document_sets ORDER BY upload_date DESC LIMIT $1 OFFSET $2
-    `,
-        countDocumentSets: `
-      SELECT COUNT(*) as count FROM document_sets
-    `,
-        updateDocumentCount: `
-      UPDATE document_sets SET total_documents = total_documents + $1 WHERE set_id = $2 RETURNING *
-    `,
-        deleteDocumentSet: `
-      DELETE FROM document_sets WHERE set_id = $1 RETURNING *
-    `,
-        selectSettings: `
-      SELECT * FROM meaningfully_settings WHERE settings_id = 1
-    `,
-        upsertSettings: `
-      INSERT INTO meaningfully_settings (settings_id, settings)
-      VALUES (1, $1)
-      ON CONFLICT (settings_id) DO UPDATE SET settings = $2
-      RETURNING *
-    `
-        // the two arguments $1 and $2 are identical, but, to work around a cross-compatibility bug in SQLite versus Postgresql,
-        // where PG can accept the same argument twice (specified as $1 in two places), but SQLITE cannot (it just has ? placeholders)
-        // they are specified separately.
-    };
     async addDocumentSet(metadata) {
-        const result = await this.runQuerySingle(this.queries.insertDocumentSet, [
-            metadata.name,
-            metadata.uploadDate.toISOString(),
-            JSON.stringify(metadata.parameters),
-            metadata.totalDocuments
-        ]);
-        return result?.set_id || 0;
+        const [result] = await this.knex('document_sets')
+            .insert({
+            name: metadata.name,
+            upload_date: metadata.uploadDate,
+            parameters: JSON.stringify(metadata.parameters),
+            total_documents: metadata.totalDocuments
+        })
+            .returning('set_id');
+        return typeof result === 'object' ? result.set_id : result;
     }
     async getDocumentSet(documentSetId) {
-        const row = await this.runQuerySingle(this.queries.selectDocumentSet, [documentSetId]);
+        const row = await this.knex('document_sets')
+            .where('set_id', documentSetId)
+            .first();
         if (!row)
             return null;
         return {
@@ -74,9 +26,13 @@ export class MetadataManager {
     }
     async getDocumentSets(page = 1, pageSize = 10) {
         const offset = (page - 1) * pageSize;
-        const totalCountRow = await this.runQuerySingle(this.queries.countDocumentSets);
-        const totalCount = totalCountRow?.count || 0;
-        const rows = await this.runQuery(this.queries.selectDocumentSets, [pageSize, offset]);
+        const totalCountRow = await this.knex('document_sets').count('* as count').first();
+        const totalCount = totalCountRow ? Number(totalCountRow.count) : 0;
+        const rows = await this.knex('document_sets')
+            .select('*')
+            .orderBy('upload_date', 'desc')
+            .limit(pageSize)
+            .offset(offset);
         const documents = rows.map((row) => ({
             documentSetId: row.set_id,
             name: row.name,
@@ -87,10 +43,14 @@ export class MetadataManager {
         return { documents, total: totalCount };
     }
     async updateDocumentCount(documentSetId, count) {
-        await this.runQuery(this.queries.updateDocumentCount, [count, documentSetId]);
+        await this.knex('document_sets')
+            .where('set_id', documentSetId)
+            .increment('total_documents', count);
     }
     async deleteDocumentSet(documentSetId) {
-        await this.runQuery(this.queries.deleteDocumentSet, [documentSetId]);
+        await this.knex('document_sets')
+            .where('set_id', documentSetId)
+            .delete();
     }
     async getSettings() {
         const DEFAULT_SETTINGS = {
@@ -102,13 +62,19 @@ export class MetadataManager {
             mistralApiKey: null,
             geminiApiKey: null,
         };
-        const row = await this.runQuerySingle(this.queries.selectSettings);
+        const row = await this.knex('meaningfully_settings')
+            .where('settings_id', 1)
+            .first();
         return row ? { ...DEFAULT_SETTINGS, ...JSON.parse(row.settings) } : DEFAULT_SETTINGS;
     }
     async setSettings(settings) {
-        // the JSON.stringify(settings) is repeated to work around a cross-compatibility bug in SQLite versus Postgresql
-        // where PG can accept the same argument twice (specified as $1 in two places), but SQLITE cannot (it just has ? placeholders)
-        await this.runQuery(this.queries.upsertSettings, [JSON.stringify(settings), JSON.stringify(settings)]);
+        await this.knex('meaningfully_settings')
+            .insert({
+            settings_id: 1,
+            settings: JSON.stringify(settings)
+        })
+            .onConflict('settings_id')
+            .merge();
         return { success: true };
     }
 }

package/dist/MetadataManager.js.map

@@ -1 +1 @@
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+{"version":3,"file":"MetadataManager.js","sourceRoot":"","sources":["../src/MetadataManager.ts"],"names":[],"mappings":"AAGA,MAAM,OAAgB,eAAe;IAMnC,KAAK,CAAC,cAAc,CAAC,QAAoD;QACvE,MAAM,CAAC,MAAM,CAAC,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,eAAe,CAAC;aAC9C,MAAM,CAAC;YACN,IAAI,EAAE,QAAQ,CAAC,IAAI;YACnB,WAAW,EAAE,QAAQ,CAAC,UAAU;YAChC,UAAU,EAAE,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,UAAU,CAAC;YAC/C,eAAe,EAAE,QAAQ,CAAC,cAAc;SACzC,CAAC;aACD,SAAS,CAAC,QAAQ,CAAC,CAAC;QAEvB,OAAO,OAAO,MAAM,KAAK,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC;IAC7D,CAAC;IAED,KAAK,CAAC,cAAc,CAAC,aAAqB;QACxC,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,eAAe,CAAC;aACzC,KAAK,CAAC,QAAQ,EAAE,aAAa,CAAC;aAC9B,KAAK,EAAE,CAAC;QAEX,IAAI,CAAC,GAAG;YAAE,OAAO,IAAI,CAAC;QAEtB,OAAO;YACL,aAAa,EAAE,GAAG,CAAC,MAAM;YACzB,IAAI,EAAE,GAAG,CAAC,IAAI;YACd,UAAU,EAAE,IAAI,IAAI,CAAC,GAAG,CAAC,WAAW,CAAC;YACrC,UAAU,EAAE,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,UAAU,CAAC;YACtC,cAAc,EAAE,GAAG,CAAC,eAAe;SACpC,CAAC;IACJ,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,OAAe,CAAC,EAAE,WAAmB,EAAE;QAC3D,MAAM,MAAM,GAAG,CAAC,IAAI,GAAG,CAAC,CAAC,GAAG,QAAQ,CAAC;QAErC,MAAM,aAAa,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,eAAe,CAAC,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC,KAAK,EAAE,CAAC;QACnF,MAAM,UAAU,GAAG,aAAa,CAAC,CAAC,CAAC,MAAM,CAAC,aAAa,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAEnE,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,eAAe,CAAC;aAC1C,MAAM,CAAC,GAAG,CAAC;aACX,OAAO,CAAC,aAAa,EAAE,MAAM,CAAC;aAC9B,KAAK,CAAC,QAAQ,CAAC;aACf,MAAM,CAAC,MAAM,CAAC,CAAC;QAElB,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,GAAQ,EAAE,EAAE,CAAC,CAAC;YACxC,aAAa,EAAE,GAAG,CAAC,MAAM;YACzB,IAAI,EAAE,GAAG,CAAC,IAAI;YACd,UAAU,EAAE,IAAI,IAAI,CAAC,GAAG,CAAC,WAAW,CAAC;YACrC,UAAU,EAAE,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,UAAU,CAAC;YACtC,cAAc,EAAE,GAAG,CAAC,eAAe;SACpC,CAAC,CAAC,CAAC;QAEJ,OAAO,EAAE,SAAS,EAAE,KAAK,EAAE,UAAU,EAAE,CAAC;IAC1C,CAAC;IAED,KAAK,CAAC,mBAAmB,CAAC,aAAqB,EAAE,KAAa;QAC5D,MAAM,IAAI,CAAC,IAAI,CAAC,eAAe,CAAC;aAC7B,KAAK,CAAC,QAAQ,EAAE,aAAa,CAAC;aAC9B,SAAS,CAAC,iBAAiB,EAAE,KAAK,CAAC,CAAC;IACzC,CAAC;IAED,KAAK,CAAC,iBAAiB,CAAC,aAAqB;QAC3C,MAAM,IAAI,CAAC,IAAI,CAAC,eAAe,CAAC;aAC7B,KAAK,CAAC,QAAQ,EAAE,aAAa,CAAC;aAC9B,MAAM,EAAE,CAAC;IACd,CAAC;IAED,KAAK,CAAC,WAAW;QACf,MAAM,gBAAgB,GAAa;YACjC,SAAS,EAAE,IAAI;YACf,aAAa,EAAE,IAAI;YACnB,cAAc,EAAE,IAAI;YACpB,mBAAmB,EAAE,IAAI;YACzB,qBAAqB,EAAE,YAAY;YACnC,aAAa,EAAE,IAAI;YACnB,YAAY,EAAE,IAAI;SACnB,CAAC;QAEF,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,uBAAuB,CAAC;aACjD,KAAK,CAAC,aAAa,EAAE,CAAC,CAAC;aACvB,KAAK,EAAE,CAAC;QAEX,OAAO,GAAG,CAAC,CAAC,CAAC,EAAE,GAAG,gBAAgB,EAAE,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC,CAAC,gBAAgB,CAAC;IACvF,CAAC;IAED,KAAK,CAAC,WAAW,CAAC,QAAkB;QAClC,MAAM,IAAI,CAAC,IAAI,CAAC,uBAAuB,CAAC;aACrC,MAAM,CAAC;YACN,WAAW,EAAE,CAAC;YACd,QAAQ,EAAE,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC;SACnC,CAAC;aACD,UAAU,CAAC,aAAa,CAAC;aACzB,KAAK,EAAE,CAAC;QAEX,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC;IAC3B,CAAC;CACF"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@meaningfully/core",
-  "version": "0.1.6",
+  "version": "0.1.8",
   "description": "Core functionality for meaningfully semantic search",
   "repository": "https://github.com/jeremybmerrill/meaningfully-core",
   "license": "MIT",
@@ -29,6 +29,7 @@
     "@llamaindex/postgres": "^0.0.64",
     "@llamaindex/weaviate": "^0.0.36",
     "js-tiktoken": "^1.0.8",
+    "knex": "^3.1.0",
     "llamaindex": "^0.11.14",
     "lodash": "^4.17.21",
     "natural": "^8.1.0",

package/src/Meaningfully.ts

@@ -275,6 +275,43 @@ export class MeaningfullyAPI {
     return this.metadataManager.setSettings(settings);
   }
 
+  async getAvailableModelOptions() {
+    const settings = await this.metadataManager.getSettings();
+    
+    // Define all possible model options
+    const allModelOptions: Record<string, string[]> = {
+      "openai": ["text-embedding-3-small", "text-embedding-3-large"],
+      "azure": ["text-embedding-3-small", "text-embedding-3-large"],
+      "ollama": ["mxbai-embed-large", "nomic-embed-text"],
+      "mistral": ["mistral-embed"],
+      "gemini": ["gemini-embedding-001"]
+    };
+
+    // Filter based on which settings are configured
+    const availableModelOptions: Record<string, string[]> = {};
+    
+    if (settings.openAIKey) {
+      availableModelOptions.openai = allModelOptions.openai!;
+    }
+    if (settings.azureOpenAIKey && settings.azureOpenAIEndpoint) {
+      availableModelOptions.azure = allModelOptions.azure!;
+    }
+    if (settings.oLlamaBaseURL) {
+      availableModelOptions.ollama = allModelOptions.ollama!;
+    }
+    if (settings.mistralApiKey) {
+      availableModelOptions.mistral = allModelOptions.mistral!;
+    }
+    if (settings.geminiApiKey) {
+      availableModelOptions.gemini = allModelOptions.gemini!;
+    }
+
+    return {
+      availableModelOptions,
+      allModelOptions
+    };
+  }
+
 
   // these should be moved to another file, just because they're too low-level for this one.
   async deletePostgresVectorStore(projectName: string) {

package/src/MetadataManager.ts

@@ -1,82 +1,29 @@
 import type { DocumentSetMetadata, Settings } from './types/index.js';
+import type { Knex } from 'knex';
 
 export abstract class MetadataManager {
-  protected queries = {
-    /* 
-    Note: RETURNING on non-select/non-create statements is important for compatibility between SQLite and PostgreSQL.
-    (Without it, better-sqlite would demand to use run() instead of all() or get(), which would break the abstraction.)
-    */
-    createDocumentSetsTable: `
-      CREATE TABLE IF NOT EXISTS document_sets (
-        set_id SERIAL PRIMARY KEY,
-        name TEXT NOT NULL UNIQUE,
-        upload_date TIMESTAMP NOT NULL,
-        parameters TEXT NOT NULL,
-        total_documents INTEGER NOT NULL DEFAULT 0
-      );
-    `,
-    createSettingsTable: `
-      CREATE TABLE IF NOT EXISTS meaningfully_settings (
-        settings_id SERIAL PRIMARY KEY,
-        settings TEXT NOT NULL
-      );
-    `,
-    insertDocumentSet: `
-      INSERT INTO document_sets (name, upload_date, parameters, total_documents)
-      VALUES ($1, $2, $3, $4) RETURNING set_id
-    `,
-    selectDocumentSet: `
-      SELECT * FROM document_sets WHERE set_id = $1
-    `,
-    selectDocumentSets: `
-      SELECT * FROM document_sets ORDER BY upload_date DESC LIMIT $1 OFFSET $2
-    `,
-    countDocumentSets: `
-      SELECT COUNT(*) as count FROM document_sets
-    `,
-    updateDocumentCount: `
-      UPDATE document_sets SET total_documents = total_documents + $1 WHERE set_id = $2 RETURNING *
-    `,
-    deleteDocumentSet: `
-      DELETE FROM document_sets WHERE set_id = $1 RETURNING *
-    `,
-    selectSettings: `
-      SELECT * FROM meaningfully_settings WHERE settings_id = 1
-    `,
-    upsertSettings: `
-      INSERT INTO meaningfully_settings (settings_id, settings)
-      VALUES (1, $1)
-      ON CONFLICT (settings_id) DO UPDATE SET settings = $2
-      RETURNING *
-    `     
-    // the two arguments $1 and $2 are identical, but, to work around a cross-compatibility bug in SQLite versus Postgresql,
-    // where PG can accept the same argument twice (specified as $1 in two places), but SQLITE cannot (it just has ? placeholders)
-    // they are specified separately.
-  };
+  protected abstract knex: Knex;
 
-  protected abstract runQuery<T>(query: string, params?: any[]): Promise<T[]>;
-  protected abstract runQuerySingle<T>(query: string, params?: any[]): Promise<T | null>;
   protected abstract initializeDatabase(): Promise<void>;
   protected abstract close(): void;
 
   async addDocumentSet(metadata: Omit<DocumentSetMetadata, 'documentSetId'>): Promise<number> {
-    const result = await this.runQuerySingle<{ set_id: number }>(this.queries.insertDocumentSet, [
-      metadata.name,
-      metadata.uploadDate.toISOString(),
-      JSON.stringify(metadata.parameters),
-      metadata.totalDocuments
-    ]);
-    return result?.set_id || 0;
+    const [result] = await this.knex('document_sets')
+      .insert({
+        name: metadata.name,
+        upload_date: metadata.uploadDate,
+        parameters: JSON.stringify(metadata.parameters),
+        total_documents: metadata.totalDocuments
+      })
+      .returning('set_id');
+    
+    return typeof result === 'object' ? result.set_id : result;
   }
 
   async getDocumentSet(documentSetId: number): Promise<DocumentSetMetadata | null> {
-    const row = await this.runQuerySingle<{
-      set_id: number;
-      name: string;
-      upload_date: string;
-      parameters: string;
-      total_documents: number;
-    }>(this.queries.selectDocumentSet, [documentSetId]);
+    const row = await this.knex('document_sets')
+      .where('set_id', documentSetId)
+      .first();
 
     if (!row) return null;
 
@@ -91,18 +38,17 @@ export abstract class MetadataManager {
 
   async getDocumentSets(page: number = 1, pageSize: number = 10): Promise<{ documents: DocumentSetMetadata[]; total: number }> {
     const offset = (page - 1) * pageSize;
-    const totalCountRow = await this.runQuerySingle<{ count: number }>(this.queries.countDocumentSets);
-    const totalCount = totalCountRow?.count || 0;
+    
+    const totalCountRow = await this.knex('document_sets').count('* as count').first();
+    const totalCount = totalCountRow ? Number(totalCountRow.count) : 0;
 
-    const rows = await this.runQuery<{
-      set_id: number;
-      name: string;
-      upload_date: string;
-      parameters: string;
-      total_documents: number;
-    }>(this.queries.selectDocumentSets, [pageSize, offset]);
+    const rows = await this.knex('document_sets')
+      .select('*')
+      .orderBy('upload_date', 'desc')
+      .limit(pageSize)
+      .offset(offset);
 
-    const documents = rows.map((row) => ({
+    const documents = rows.map((row: any) => ({
       documentSetId: row.set_id,
       name: row.name,
       uploadDate: new Date(row.upload_date),
@@ -114,11 +60,15 @@ export abstract class MetadataManager {
   }
 
   async updateDocumentCount(documentSetId: number, count: number): Promise<void> {
-    await this.runQuery(this.queries.updateDocumentCount, [count, documentSetId]);
+    await this.knex('document_sets')
+      .where('set_id', documentSetId)
+      .increment('total_documents', count);
   }
 
   async deleteDocumentSet(documentSetId: number): Promise<void> {
-    await this.runQuery(this.queries.deleteDocumentSet, [documentSetId]);
+    await this.knex('document_sets')
+      .where('set_id', documentSetId)
+      .delete();
   }
 
   async getSettings(): Promise<Settings> {
@@ -132,14 +82,22 @@ export abstract class MetadataManager {
       geminiApiKey: null,
     };
 
-    const row = await this.runQuerySingle<{ settings: string }>(this.queries.selectSettings);
+    const row = await this.knex('meaningfully_settings')
+      .where('settings_id', 1)
+      .first();
+    
     return row ? { ...DEFAULT_SETTINGS, ...JSON.parse(row.settings) } : DEFAULT_SETTINGS;
   }
 
   async setSettings(settings: Settings): Promise<{ success: boolean }> {
-    // the JSON.stringify(settings) is repeated to work around a cross-compatibility bug in SQLite versus Postgresql
-    // where PG can accept the same argument twice (specified as $1 in two places), but SQLITE cannot (it just has ? placeholders)
-    await this.runQuery(this.queries.upsertSettings, [JSON.stringify(settings), JSON.stringify(settings)]);
+    await this.knex('meaningfully_settings')
+      .insert({
+        settings_id: 1,
+        settings: JSON.stringify(settings)
+      })
+      .onConflict('settings_id')
+      .merge();
+    
     return { success: true };
   }
 }

package/src/__tests__/MetadataManager.test.ts

@@ -1,24 +1,47 @@
 import { MetadataManager } from '../MetadataManager.js';
 import { describe, it, expect, vi, beforeEach } from 'vitest';
+import type { Knex } from 'knex';
 
 describe('MetadataManager', () => {
   let metadataManager: MetadataManager;
+  let mockKnex: any;
 
   beforeEach(() => {
+    // Create a mock Knex instance with chainable methods
+    mockKnex = {
+      schema: {
+        hasTable: vi.fn().mockResolvedValue(true),
+        createTable: vi.fn().mockReturnThis(),
+      },
+      insert: vi.fn().mockReturnThis(),
+      returning: vi.fn().mockResolvedValue([{ set_id: 1 }]),
+      where: vi.fn().mockReturnThis(),
+      first: vi.fn().mockResolvedValue(null),
+      select: vi.fn().mockReturnThis(),
+      orderBy: vi.fn().mockReturnThis(),
+      limit: vi.fn().mockReturnThis(),
+      offset: vi.fn().mockResolvedValue([]),
+      count: vi.fn().mockReturnThis(),
+      increment: vi.fn().mockResolvedValue(undefined),
+      delete: vi.fn().mockResolvedValue(undefined),
+      onConflict: vi.fn().mockReturnThis(),
+      merge: vi.fn().mockResolvedValue(undefined),
+      destroy: vi.fn().mockResolvedValue(undefined),
+    };
+
+    // Make mockKnex callable as a function that returns itself for chaining
+    const knexFn = vi.fn().mockReturnValue(mockKnex);
+    Object.assign(knexFn, mockKnex);
+
     metadataManager = new (class extends MetadataManager {
-      protected async runQuery<T>(query: string, params?: any[]): Promise<T[]> {
-        return [] as T[];
-      }
-      protected async runQuerySingle<T>(query: string, params?: any[]): Promise<T | null> {
-        return null;
-      }
+      protected knex = knexFn as any;
       protected async initializeDatabase(): Promise<void> {}
       protected close(): void {}
     })();
   });
 
   it('should add a document set and return its ID', async () => {
-    vi.spyOn(metadataManager, 'runQuerySingle').mockResolvedValueOnce({ set_id: 1 });
+    mockKnex.returning.mockResolvedValueOnce([{ set_id: 1 }]);
 
     const documentSetId = await metadataManager.addDocumentSet({
       name: 'Test Set',
@@ -31,7 +54,7 @@ describe('MetadataManager', () => {
   });
 
   it('should retrieve a document set by ID', async () => {
-    vi.spyOn(metadataManager, 'runQuerySingle').mockResolvedValueOnce({
+    mockKnex.first.mockResolvedValueOnce({
       set_id: 1,
       name: 'Test Set',
       upload_date: new Date().toISOString(),
@@ -51,23 +74,19 @@ describe('MetadataManager', () => {
   });
 
   it('should update the document count for a document set', async () => {
-    const runQuerySpy = vi.spyOn(metadataManager, 'runQuery').mockResolvedValueOnce([]);
-
     await metadataManager.updateDocumentCount(1, 5);
 
-    expect(runQuerySpy).toHaveBeenCalledWith(metadataManager.queries.updateDocumentCount, [5, 1]);
+    expect(mockKnex.increment).toHaveBeenCalledWith('total_documents', 5);
   });
 
   it('should delete a document set by ID', async () => {
-    const runQuerySpy = vi.spyOn(metadataManager, 'runQuery').mockResolvedValueOnce([]);
-
     await metadataManager.deleteDocumentSet(1);
 
-    expect(runQuerySpy).toHaveBeenCalledWith(metadataManager.queries.deleteDocumentSet, [1]);
+    expect(mockKnex.delete).toHaveBeenCalled();
   });
 
   it('should retrieve default settings if none exist', async () => {
-    vi.spyOn(metadataManager, 'runQuerySingle').mockResolvedValueOnce(null);
+    mockKnex.first.mockResolvedValueOnce(null);
 
     const settings = await metadataManager.getSettings();
 
@@ -83,8 +102,6 @@ describe('MetadataManager', () => {
   });
 
   it('should update settings', async () => {
-    const runQuerySpy = vi.spyOn(metadataManager, 'runQuery').mockResolvedValueOnce([]);
-
     const result = await metadataManager.setSettings({
       openAIKey: 'test-key',
       oLlamaBaseURL: 'http://localhost',
@@ -96,25 +113,8 @@ describe('MetadataManager', () => {
     });
 
     expect(result).toEqual({ success: true });
-    expect(runQuerySpy).toHaveBeenCalledWith(metadataManager.queries.upsertSettings, [
-      JSON.stringify({
-        openAIKey: 'test-key',
-        oLlamaBaseURL: 'http://localhost',
-        azureOpenAIKey: 'azure-key',
-        azureOpenAIEndpoint: 'http://azure.endpoint',
-        azureOpenAIApiVersion: '2024-02-01',
-        mistralApiKey: 'mistral-key',
-        geminiApiKey: 'gemini-key',
-      }),
-      JSON.stringify({
-        openAIKey: 'test-key',
-        oLlamaBaseURL: 'http://localhost',
-        azureOpenAIKey: 'azure-key',
-        azureOpenAIEndpoint: 'http://azure.endpoint',
-        azureOpenAIApiVersion: '2024-02-01',
-        mistralApiKey: 'mistral-key',
-        geminiApiKey: 'gemini-key',
-      }),
-    ]);
+    expect(mockKnex.insert).toHaveBeenCalled();
+    expect(mockKnex.onConflict).toHaveBeenCalledWith('settings_id');
+    expect(mockKnex.merge).toHaveBeenCalled();
   });
 });