@mcptoolshop/research-os 0.4.0 → 0.6.0

package/dist/index.d.ts

@@ -1,4 +1,5 @@
 import { z } from 'zod';
+import { R as ReviewerOptions } from './reviewer-options-schema-PZacF_MO.js';
 import * as Database from 'better-sqlite3';
 import Database__default from 'better-sqlite3';
 
@@ -11,21 +12,21 @@ declare const SectionSchema: z.ZodObject<{
     contradictions_required: z.ZodDefault<z.ZodBoolean>;
     status: z.ZodDefault<z.ZodEnum<["draft", "gathering", "gated", "reviewed", "frozen"]>>;
 }, "strip", z.ZodTypeAny, {
+    status: "draft" | "gathering" | "gated" | "reviewed" | "frozen";
     id: string;
     purpose: string;
     max_time_minutes: number;
     min_sources: number;
     primary_sources_required: number;
     contradictions_required: boolean;
-    status: "draft" | "gathering" | "gated" | "reviewed" | "frozen";
 }, {
     id: string;
     purpose: string;
+    status?: "draft" | "gathering" | "gated" | "reviewed" | "frozen" | undefined;
     max_time_minutes?: number | undefined;
     min_sources?: number | undefined;
     primary_sources_required?: number | undefined;
     contradictions_required?: boolean | undefined;
-    status?: "draft" | "gathering" | "gated" | "reviewed" | "frozen" | undefined;
 }>;
 declare const GateConfigSchema: z.ZodObject<{
     source_floor: z.ZodDefault<z.ZodObject<{
@@ -262,21 +263,21 @@ declare const ResearchYamlSchema: z.ZodObject<{
         contradictions_required: z.ZodDefault<z.ZodBoolean>;
         status: z.ZodDefault<z.ZodEnum<["draft", "gathering", "gated", "reviewed", "frozen"]>>;
     }, "strip", z.ZodTypeAny, {
+        status: "draft" | "gathering" | "gated" | "reviewed" | "frozen";
         id: string;
         purpose: string;
         max_time_minutes: number;
         min_sources: number;
         primary_sources_required: number;
         contradictions_required: boolean;
-        status: "draft" | "gathering" | "gated" | "reviewed" | "frozen";
     }, {
         id: string;
         purpose: string;
+        status?: "draft" | "gathering" | "gated" | "reviewed" | "frozen" | undefined;
         max_time_minutes?: number | undefined;
         min_sources?: number | undefined;
         primary_sources_required?: number | undefined;
         contradictions_required?: boolean | undefined;
-        status?: "draft" | "gathering" | "gated" | "reviewed" | "frozen" | undefined;
     }>, "many">>;
     gates: z.ZodDefault<z.ZodObject<{
         source_floor: z.ZodDefault<z.ZodObject<{
@@ -394,6 +395,28 @@ declare const ResearchYamlSchema: z.ZodObject<{
         mode: z.ZodDefault<z.ZodEnum<["general", "two_pass"]>>;
         status: z.ZodDefault<z.ZodEnum<["calibrated_baseline", "experimental", "deprecated"]>>;
         notes: z.ZodDefault<z.ZodNullable<z.ZodString>>;
+        reviewer_options: z.ZodOptional<z.ZodObject<{
+            num_ctx: z.ZodOptional<z.ZodNumber>;
+            temperature: z.ZodOptional<z.ZodNumber>;
+            seed: z.ZodOptional<z.ZodNumber>;
+            top_p: z.ZodOptional<z.ZodNumber>;
+            top_k: z.ZodOptional<z.ZodNumber>;
+            repeat_penalty: z.ZodOptional<z.ZodNumber>;
+        }, "strip", z.ZodTypeAny, {
+            num_ctx?: number | undefined;
+            temperature?: number | undefined;
+            seed?: number | undefined;
+            top_p?: number | undefined;
+            top_k?: number | undefined;
+            repeat_penalty?: number | undefined;
+        }, {
+            num_ctx?: number | undefined;
+            temperature?: number | undefined;
+            seed?: number | undefined;
+            top_p?: number | undefined;
+            top_k?: number | undefined;
+            repeat_penalty?: number | undefined;
+        }>>;
     }, "strip", z.ZodTypeAny, {
         status: "calibrated_baseline" | "experimental" | "deprecated";
         general_model: string | null;
@@ -401,6 +424,14 @@ declare const ResearchYamlSchema: z.ZodObject<{
         review_window: number | null;
         mode: "general" | "two_pass";
         notes: string | null;
+        reviewer_options?: {
+            num_ctx?: number | undefined;
+            temperature?: number | undefined;
+            seed?: number | undefined;
+            top_p?: number | undefined;
+            top_k?: number | undefined;
+            repeat_penalty?: number | undefined;
+        } | undefined;
     }, {
         status?: "calibrated_baseline" | "experimental" | "deprecated" | undefined;
         general_model?: string | null | undefined;
@@ -408,6 +439,14 @@ declare const ResearchYamlSchema: z.ZodObject<{
         review_window?: number | null | undefined;
         mode?: "general" | "two_pass" | undefined;
         notes?: string | null | undefined;
+        reviewer_options?: {
+            num_ctx?: number | undefined;
+            temperature?: number | undefined;
+            seed?: number | undefined;
+            top_p?: number | undefined;
+            top_k?: number | undefined;
+            repeat_penalty?: number | undefined;
+        } | undefined;
     }>>>;
     frozen_at: z.ZodDefault<z.ZodNullable<z.ZodString>>;
 }, "strip", z.ZodTypeAny, {
@@ -435,13 +474,13 @@ declare const ResearchYamlSchema: z.ZodObject<{
         reason?: string | undefined;
     };
     sections: {
+        status: "draft" | "gathering" | "gated" | "reviewed" | "frozen";
         id: string;
         purpose: string;
         max_time_minutes: number;
         min_sources: number;
         primary_sources_required: number;
         contradictions_required: boolean;
-        status: "draft" | "gathering" | "gated" | "reviewed" | "frozen";
     }[];
     gates: {
         source_floor: {
@@ -475,6 +514,14 @@ declare const ResearchYamlSchema: z.ZodObject<{
         review_window: number | null;
         mode: "general" | "two_pass";
         notes: string | null;
+        reviewer_options?: {
+            num_ctx?: number | undefined;
+            temperature?: number | undefined;
+            seed?: number | undefined;
+            top_p?: number | undefined;
+            top_k?: number | undefined;
+            repeat_penalty?: number | undefined;
+        } | undefined;
     }>;
     frozen_at: string | null;
 }, {
@@ -504,11 +551,11 @@ declare const ResearchYamlSchema: z.ZodObject<{
     sections?: {
         id: string;
         purpose: string;
+        status?: "draft" | "gathering" | "gated" | "reviewed" | "frozen" | undefined;
         max_time_minutes?: number | undefined;
         min_sources?: number | undefined;
         primary_sources_required?: number | undefined;
         contradictions_required?: boolean | undefined;
-        status?: "draft" | "gathering" | "gated" | "reviewed" | "frozen" | undefined;
     }[] | undefined;
     gates?: {
         source_floor?: {
@@ -542,6 +589,14 @@ declare const ResearchYamlSchema: z.ZodObject<{
         review_window?: number | null | undefined;
         mode?: "general" | "two_pass" | undefined;
         notes?: string | null | undefined;
+        reviewer_options?: {
+            num_ctx?: number | undefined;
+            temperature?: number | undefined;
+            seed?: number | undefined;
+            top_p?: number | undefined;
+            top_k?: number | undefined;
+            repeat_penalty?: number | undefined;
+        } | undefined;
     }> | undefined;
     frozen_at?: string | null | undefined;
 }>;
@@ -598,21 +653,21 @@ declare const SectionGatesYamlSchema: z.ZodObject<{
     primary_sources_required: z.ZodNumber;
     contradictions_required: z.ZodBoolean;
 }, "strip", z.ZodTypeAny, {
+    status: "draft" | "gathering" | "gated" | "reviewed" | "frozen";
     purpose: string;
     max_time_minutes: number;
     min_sources: number;
     primary_sources_required: number;
     contradictions_required: boolean;
-    status: "draft" | "gathering" | "gated" | "reviewed" | "frozen";
     section_id: string;
     created_at: string;
 }, {
+    status: "draft" | "gathering" | "gated" | "reviewed" | "frozen";
     purpose: string;
     max_time_minutes: number;
     min_sources: number;
     primary_sources_required: number;
     contradictions_required: boolean;
-    status: "draft" | "gathering" | "gated" | "reviewed" | "frozen";
     section_id: string;
     created_at: string;
 }>;
@@ -775,7 +830,7 @@ declare const SourceCardSchema: z.ZodObject<{
     extracted_by: "heuristic" | "ollama-intern";
     extracted_at: string;
     rule_hint?: string | undefined;
-    precedence_level?: 5 | 2 | 4 | 3 | 6 | undefined;
+    precedence_level?: 2 | 5 | 4 | 3 | 6 | undefined;
 }, {
     section_id: string;
     scope: string | null;
@@ -796,7 +851,7 @@ declare const SourceCardSchema: z.ZodObject<{
     extracted_by: "heuristic" | "ollama-intern";
     extracted_at: string;
     rule_hint?: string | undefined;
-    precedence_level?: 5 | 2 | 4 | 3 | 6 | undefined;
+    precedence_level?: 2 | 5 | 4 | 3 | 6 | undefined;
 }>;
 type FetchReceipt = z.infer<typeof FetchReceiptSchema>;
 type SourceCard = z.infer<typeof SourceCardSchema>;
@@ -1568,8 +1623,8 @@ declare const ContradictionSchema: z.ZodObject<{
     status: z.ZodEnum<["unresolved", "reconciled", "preserved_deliberately", "rejected"]>;
     created_at: z.ZodString;
 }, "strip", z.ZodTypeAny, {
-    status: "rejected" | "unresolved" | "reconciled" | "preserved_deliberately";
     type: "direct_conflict" | "scope_conflict" | "temporal_conflict" | "definition_conflict" | "evidence_conflict" | "overgeneralization_risk";
+    status: "rejected" | "unresolved" | "reconciled" | "preserved_deliberately";
     section_id: string;
     created_at: string;
     evidence: string;
@@ -1584,8 +1639,8 @@ declare const ContradictionSchema: z.ZodObject<{
     detector: "heuristic" | "ollama-intern";
     detection_method: string;
 }, {
-    status: "rejected" | "unresolved" | "reconciled" | "preserved_deliberately";
     type: "direct_conflict" | "scope_conflict" | "temporal_conflict" | "definition_conflict" | "evidence_conflict" | "overgeneralization_risk";
+    status: "rejected" | "unresolved" | "reconciled" | "preserved_deliberately";
     section_id: string;
     created_at: string;
     evidence: string;
@@ -1671,6 +1726,7 @@ declare const ClaimReviewSchema: z.ZodObject<{
     reviewer: z.ZodEnum<["heuristic", "ollama-intern"]>;
     review_method: z.ZodString;
     created_at: z.ZodString;
+    profile: z.ZodOptional<z.ZodString>;
 }, "strip", z.ZodTypeAny, {
     reason: string;
     created_at: string;
@@ -1679,6 +1735,7 @@ declare const ClaimReviewSchema: z.ZodObject<{
     reviewer: "heuristic" | "ollama-intern";
     review_method: string;
     finding_ids: string[];
+    profile?: string | undefined;
 }, {
     reason: string;
     created_at: string;
@@ -1687,6 +1744,7 @@ declare const ClaimReviewSchema: z.ZodObject<{
     reviewer: "heuristic" | "ollama-intern";
     review_method: string;
     finding_ids: string[];
+    profile?: string | undefined;
 }>;
 declare const ReviewSnapshotSchema: z.ZodObject<{
     section_id: z.ZodString;
@@ -1745,6 +1803,7 @@ declare const ReviewSnapshotSchema: z.ZodObject<{
         reviewer: z.ZodEnum<["heuristic", "ollama-intern"]>;
         review_method: z.ZodString;
         created_at: z.ZodString;
+        profile: z.ZodOptional<z.ZodString>;
     }, "strip", z.ZodTypeAny, {
         reason: string;
         created_at: string;
@@ -1753,6 +1812,7 @@ declare const ReviewSnapshotSchema: z.ZodObject<{
         reviewer: "heuristic" | "ollama-intern";
         review_method: string;
         finding_ids: string[];
+        profile?: string | undefined;
     }, {
         reason: string;
         created_at: string;
@@ -1761,11 +1821,34 @@ declare const ReviewSnapshotSchema: z.ZodObject<{
         reviewer: "heuristic" | "ollama-intern";
         review_method: string;
         finding_ids: string[];
+        profile?: string | undefined;
     }>, "many">;
     decision_counts: z.ZodRecord<z.ZodEnum<["accepted_for_synthesis", "rejected", "needs_scope_repair", "needs_source_repair", "needs_contradiction_mapping", "needs_human_review"]>, z.ZodNumber>;
     severity_counts: z.ZodRecord<z.ZodEnum<["info", "warn", "block"]>, z.ZodNumber>;
     llm_findings_rejected_ungrounded: z.ZodNumber;
     promoted_to_reviewed: z.ZodBoolean;
+    reviewer_options: z.ZodOptional<z.ZodObject<{
+        num_ctx: z.ZodOptional<z.ZodNumber>;
+        temperature: z.ZodOptional<z.ZodNumber>;
+        seed: z.ZodOptional<z.ZodNumber>;
+        top_p: z.ZodOptional<z.ZodNumber>;
+        top_k: z.ZodOptional<z.ZodNumber>;
+        repeat_penalty: z.ZodOptional<z.ZodNumber>;
+    }, "strip", z.ZodTypeAny, {
+        num_ctx?: number | undefined;
+        temperature?: number | undefined;
+        seed?: number | undefined;
+        top_p?: number | undefined;
+        top_k?: number | undefined;
+        repeat_penalty?: number | undefined;
+    }, {
+        num_ctx?: number | undefined;
+        temperature?: number | undefined;
+        seed?: number | undefined;
+        top_p?: number | undefined;
+        top_k?: number | undefined;
+        repeat_penalty?: number | undefined;
+    }>>;
 }, "strip", z.ZodTypeAny, {
     section_id: string;
     candidate_claims: number;
@@ -1795,11 +1878,20 @@ declare const ReviewSnapshotSchema: z.ZodObject<{
         reviewer: "heuristic" | "ollama-intern";
         review_method: string;
         finding_ids: string[];
+        profile?: string | undefined;
     }[];
     decision_counts: Partial<Record<"rejected" | "needs_scope_repair" | "needs_human_review" | "accepted_for_synthesis" | "needs_source_repair" | "needs_contradiction_mapping", number>>;
     severity_counts: Partial<Record<"warn" | "info" | "block", number>>;
     llm_findings_rejected_ungrounded: number;
     promoted_to_reviewed: boolean;
+    reviewer_options?: {
+        num_ctx?: number | undefined;
+        temperature?: number | undefined;
+        seed?: number | undefined;
+        top_p?: number | undefined;
+        top_k?: number | undefined;
+        repeat_penalty?: number | undefined;
+    } | undefined;
 }, {
     section_id: string;
     candidate_claims: number;
@@ -1829,11 +1921,20 @@ declare const ReviewSnapshotSchema: z.ZodObject<{
         reviewer: "heuristic" | "ollama-intern";
         review_method: string;
         finding_ids: string[];
+        profile?: string | undefined;
     }[];
     decision_counts: Partial<Record<"rejected" | "needs_scope_repair" | "needs_human_review" | "accepted_for_synthesis" | "needs_source_repair" | "needs_contradiction_mapping", number>>;
     severity_counts: Partial<Record<"warn" | "info" | "block", number>>;
     llm_findings_rejected_ungrounded: number;
     promoted_to_reviewed: boolean;
+    reviewer_options?: {
+        num_ctx?: number | undefined;
+        temperature?: number | undefined;
+        seed?: number | undefined;
+        top_p?: number | undefined;
+        top_k?: number | undefined;
+        repeat_penalty?: number | undefined;
+    } | undefined;
 }>;
 type ReviewFinding = z.infer<typeof ReviewFindingSchema>;
 type ClaimReview = z.infer<typeof ClaimReviewSchema>;
@@ -2139,8 +2240,8 @@ declare const SectionGateResultSchema: z.ZodObject<{
         unknown: z.ZodNumber;
         independent_publishers: z.ZodNumber;
         failed_fetches: z.ZodNumber;
-        section_primary: z.ZodNumber;
-        section_independent_publishers: z.ZodNumber;
+        section_primary: z.ZodDefault<z.ZodOptional<z.ZodNumber>>;
+        section_independent_publishers: z.ZodDefault<z.ZodOptional<z.ZodNumber>>;
     }, "strip", z.ZodTypeAny, {
         unknown: number;
         primary: number;
@@ -2163,8 +2264,8 @@ declare const SectionGateResultSchema: z.ZodObject<{
         total: number;
         independent_publishers: number;
         failed_fetches: number;
-        section_primary: number;
-        section_independent_publishers: number;
+        section_primary?: number | undefined;
+        section_independent_publishers?: number | undefined;
     }>;
     contradiction_counts: z.ZodObject<{
         total: z.ZodNumber;
@@ -2363,8 +2464,8 @@ declare const SectionGateResultSchema: z.ZodObject<{
         total: number;
         independent_publishers: number;
         failed_fetches: number;
-        section_primary: number;
-        section_independent_publishers: number;
+        section_primary?: number | undefined;
+        section_independent_publishers?: number | undefined;
     };
     contradiction_counts: {
         blocking: number;
@@ -2439,6 +2540,7 @@ interface RunReviewOptions {
     triagedOnly?: boolean;
     multiPass?: boolean;
     profile?: string;
+    reviewer_options?: ReviewerOptions;
 }
 interface RunReviewSummary {
     sectionId: string;
@@ -2469,6 +2571,7 @@ interface OllamaReviewerConfig {
     claimsPerWindow?: number;
     mode?: ReviewerMode;
     fetchImpl?: typeof fetch;
+    reviewer_options?: ReviewerOptions;
 }
 declare class OllamaInternReviewer implements Reviewer {
     readonly name: "ollama-intern";
@@ -2478,6 +2581,7 @@ declare class OllamaInternReviewer implements Reviewer {
     private readonly timeoutMs;
     private readonly claimsPerWindow;
     private readonly fetchImpl;
+    readonly reviewerOptions: ReviewerOptions | undefined;
     constructor(config?: OllamaReviewerConfig);
     available(): Promise<boolean>;
     private reviewOnePage;
@@ -2602,6 +2706,7 @@ declare function deriveClaimReviews(args: {
     reviewer: ReviewerName;
     reviewMethod: string;
     activeSectionWaivers?: SectionScopedWaiver[];
+    profile?: string;
 }): ClaimReview[];
 
 declare function renderReviewMarkdown(snapshot: ReviewSnapshot): string;
@@ -2909,8 +3014,8 @@ declare const SectionStateSchema: z.ZodObject<{
         overrides_applied_count: number;
     }>>;
 }, "strip", z.ZodTypeAny, {
-    purpose: string;
     status: string;
+    purpose: string;
     section_id: string;
     synthesis_eligible: boolean;
     blocking_reasons: string[];
@@ -2943,8 +3048,8 @@ declare const SectionStateSchema: z.ZodObject<{
         overrides_applied_count: number;
     } | undefined;
 }, {
-    purpose: string;
     status: string;
+    purpose: string;
     section_id: string;
     synthesis_eligible: boolean;
     blocking_reasons: string[];
@@ -3106,8 +3211,8 @@ declare const CoworkHandoffPayloadSchema: z.ZodObject<{
             overrides_applied_count: number;
         }>>;
     }, "strip", z.ZodTypeAny, {
-        purpose: string;
         status: string;
+        purpose: string;
         section_id: string;
         synthesis_eligible: boolean;
         blocking_reasons: string[];
@@ -3140,8 +3245,8 @@ declare const CoworkHandoffPayloadSchema: z.ZodObject<{
             overrides_applied_count: number;
         } | undefined;
     }, {
-        purpose: string;
         status: string;
+        purpose: string;
         section_id: string;
         synthesis_eligible: boolean;
         blocking_reasons: string[];
@@ -3232,8 +3337,8 @@ declare const CoworkHandoffPayloadSchema: z.ZodObject<{
 }, "strip", z.ZodTypeAny, {
     mode: "repair_required" | "synthesis_ready" | "human_review_required";
     sections: {
-        purpose: string;
         status: string;
+        purpose: string;
         section_id: string;
         synthesis_eligible: boolean;
         blocking_reasons: string[];
@@ -3301,8 +3406,8 @@ declare const CoworkHandoffPayloadSchema: z.ZodObject<{
 }, {
     mode: "repair_required" | "synthesis_ready" | "human_review_required";
     sections: {
-        purpose: string;
         status: string;
+        purpose: string;
         section_id: string;
         synthesis_eligible: boolean;
         blocking_reasons: string[];
@@ -3486,14 +3591,14 @@ declare const SectionAcceptedSummarySchema: z.ZodObject<{
     accepted_claim_ids: z.ZodArray<z.ZodString, "many">;
     excluded_reason: z.ZodNullable<z.ZodString>;
 }, "strip", z.ZodTypeAny, {
-    purpose: string;
     status: string;
+    purpose: string;
     section_id: string;
     accepted_claim_ids: string[];
     excluded_reason: string | null;
 }, {
-    purpose: string;
     status: string;
+    purpose: string;
     section_id: string;
     accepted_claim_ids: string[];
     excluded_reason: string | null;
@@ -3566,15 +3671,15 @@ declare const CrossSectionContradictionRefSchema: z.ZodObject<{
     severity: z.ZodString;
     status: z.ZodString;
 }, "strip", z.ZodTypeAny, {
-    status: string;
     type: string;
+    status: string;
     sections: string[];
     claim_ids: string[];
     severity: string;
     contradiction_id: string;
 }, {
-    status: string;
     type: string;
+    status: string;
     sections: string[];
     claim_ids: string[];
     severity: string;
@@ -3656,14 +3761,14 @@ declare const CrossSectionMapSchema: z.ZodObject<{
         accepted_claim_ids: z.ZodArray<z.ZodString, "many">;
         excluded_reason: z.ZodNullable<z.ZodString>;
     }, "strip", z.ZodTypeAny, {
-        purpose: string;
         status: string;
+        purpose: string;
         section_id: string;
         accepted_claim_ids: string[];
         excluded_reason: string | null;
     }, {
-        purpose: string;
         status: string;
+        purpose: string;
         section_id: string;
         accepted_claim_ids: string[];
         excluded_reason: string | null;
@@ -3736,15 +3841,15 @@ declare const CrossSectionMapSchema: z.ZodObject<{
         severity: z.ZodString;
         status: z.ZodString;
     }, "strip", z.ZodTypeAny, {
-        status: string;
         type: string;
+        status: string;
         sections: string[];
         claim_ids: string[];
         severity: string;
         contradiction_id: string;
     }, {
-        status: string;
         type: string;
+        status: string;
         sections: string[];
         claim_ids: string[];
         severity: string;
@@ -3816,8 +3921,8 @@ declare const CrossSectionMapSchema: z.ZodObject<{
     }>, "many">;
 }, "strip", z.ZodTypeAny, {
     sections: {
-        purpose: string;
         status: string;
+        purpose: string;
         section_id: string;
         accepted_claim_ids: string[];
         excluded_reason: string | null;
@@ -3850,8 +3955,8 @@ declare const CrossSectionMapSchema: z.ZodObject<{
         warning: string;
     }[];
     cross_section_contradictions: {
-        status: string;
         type: string;
+        status: string;
         sections: string[];
         claim_ids: string[];
         severity: string;
@@ -3883,8 +3988,8 @@ declare const CrossSectionMapSchema: z.ZodObject<{
     }[];
 }, {
     sections: {
-        purpose: string;
         status: string;
+        purpose: string;
         section_id: string;
         accepted_claim_ids: string[];
         excluded_reason: string | null;
@@ -3917,8 +4022,8 @@ declare const CrossSectionMapSchema: z.ZodObject<{
         warning: string;
     }[];
     cross_section_contradictions: {
-        status: string;
         type: string;
+        status: string;
         sections: string[];
         claim_ids: string[];
         severity: string;
@@ -4251,16 +4356,16 @@ declare const UnresolvedContradictionRowSchema: z.ZodObject<{
     claim_ids: z.ZodArray<z.ZodString, "many">;
     artifact_path: z.ZodString;
 }, "strip", z.ZodTypeAny, {
-    status: string;
     type: string;
+    status: string;
     section_id: string;
     claim_ids: string[];
     severity: string;
     contradiction_id: string;
     artifact_path: string;
 }, {
-    status: string;
     type: string;
+    status: string;
     section_id: string;
     claim_ids: string[];
     severity: string;
@@ -4319,8 +4424,8 @@ declare const SynthesisReadinessRowSchema: z.ZodObject<{
     cowork_handoff_mode: z.ZodEnum<["repair_required", "synthesis_ready", "human_review_required", "unknown"]>;
     workspace_allowed: z.ZodBoolean;
 }, "strip", z.ZodTypeAny, {
-    purpose: string;
     status: string;
+    purpose: string;
     section_id: string;
     candidate_claims: number;
     synthesis_eligible: boolean;
@@ -4335,8 +4440,8 @@ declare const SynthesisReadinessRowSchema: z.ZodObject<{
     cowork_handoff_mode: "unknown" | "repair_required" | "synthesis_ready" | "human_review_required";
     workspace_allowed: boolean;
 }, {
-    purpose: string;
     status: string;
+    purpose: string;
     section_id: string;
     candidate_claims: number;
     synthesis_eligible: boolean;
@@ -4374,8 +4479,8 @@ declare const PackAuditPayloadSchema: z.ZodObject<{
         cowork_handoff_mode: z.ZodEnum<["repair_required", "synthesis_ready", "human_review_required", "unknown"]>;
         workspace_allowed: z.ZodBoolean;
     }, "strip", z.ZodTypeAny, {
-        purpose: string;
         status: string;
+        purpose: string;
         section_id: string;
         candidate_claims: number;
         synthesis_eligible: boolean;
@@ -4390,8 +4495,8 @@ declare const PackAuditPayloadSchema: z.ZodObject<{
         cowork_handoff_mode: "unknown" | "repair_required" | "synthesis_ready" | "human_review_required";
         workspace_allowed: boolean;
     }, {
-        purpose: string;
         status: string;
+        purpose: string;
         section_id: string;
         candidate_claims: number;
         synthesis_eligible: boolean;
@@ -4582,8 +4687,8 @@ declare const PackAuditPayloadSchema: z.ZodObject<{
     generated_at: string;
     synthesis_allowed: boolean;
     section_summaries: {
-        purpose: string;
         status: string;
+        purpose: string;
         section_id: string;
         candidate_claims: number;
         synthesis_eligible: boolean;
@@ -4667,8 +4772,8 @@ declare const PackAuditPayloadSchema: z.ZodObject<{
     generated_at: string;
     synthesis_allowed: boolean;
     section_summaries: {
-        purpose: string;
         status: string;
+        purpose: string;
         section_id: string;
         candidate_claims: number;
         synthesis_eligible: boolean;
@@ -4915,15 +5020,15 @@ declare const FreezeReceiptPayloadSchema: z.ZodObject<{
         status: z.ZodString;
         disclosed_in: z.ZodArray<z.ZodString, "many">;
     }, "strip", z.ZodTypeAny, {
-        status: string;
         type: string;
+        status: string;
         section_id: string;
         severity: string;
         contradiction_id: string;
         disclosed_in: string[];
     }, {
-        status: string;
         type: string;
+        status: string;
         section_id: string;
         severity: string;
         contradiction_id: string;
@@ -5015,8 +5120,8 @@ declare const FreezeReceiptPayloadSchema: z.ZodObject<{
     cited_claim_ids: string[];
     uncited_accepted_claim_ids: string[];
     unresolved_contradictions: {
-        status: string;
         type: string;
+        status: string;
         section_id: string;
         severity: string;
         contradiction_id: string;
@@ -5067,8 +5172,8 @@ declare const FreezeReceiptPayloadSchema: z.ZodObject<{
     cited_claim_ids: string[];
     uncited_accepted_claim_ids: string[];
     unresolved_contradictions: {
-        status: string;
         type: string;
+        status: string;
         section_id: string;
         severity: string;
         contradiction_id: string;
@@ -6149,6 +6254,6 @@ declare class SynthesisNotReadyError extends ResearchOSError {
     constructor(mode: string);
 }
 
-declare const RESEARCH_OS_VERSION = "0.4.0";
+declare const RESEARCH_OS_VERSION = "0.6.0";
 
 export { type AllowedSynthesisInput, AllowedSynthesisInputSchema, type ApproveOptions, type ApproveResult, type ArchivedArtifact, ArchivedArtifactSchema, type ArtifactHash, ArtifactHashSchema, type AuditDensityOptions, type AuditDensityResult, type HandoffMode as AuditHandoffMode, HandoffModeSchema as AuditHandoffModeSchema, type AuditOptions, type AuditSummary, type CitationCoverage, type Claim, type ClaimCluster, ClaimClusterSchema, type ClaimCounts, type ClaimDensityAudit, ClaimDensityAuditSchema, type ClaimExtractionInput, type ClaimExtractionResult, type ClaimExtractor, type ClaimExtractorAdapter, ClaimExtractorSchema, type ClaimReview, ClaimReviewSchema, ClaimSchema, type ClaimSummary, type ClaimTriage, ClaimTriageSchema, type Confidence, ConfidenceSchema, type Contradiction, ContradictionConfidenceSchema, type ContradictionCounts, type ContradictionDetector, type ContradictionDetectorName, ContradictionDetectorSchema, type ContradictionResolution, ContradictionResolutionSchema, ContradictionSchema, type ContradictionStatus, ContradictionStatusSchema, type ContradictionSummary, type ContradictionType, ContradictionTypeSchema, type CoworkHandoffPayload$1 as CoworkHandoffPayload, CoworkHandoffPayloadSchema, type CrossSectionContradictionRef, CrossSectionContradictionRefSchema, type CrossSectionMap, CrossSectionMapSchema, DEFAULT_PROFILE, type DensityFlag, DensityFlagSchema, type DetectionResult, type DetectorMode, type DiscoverOptions, type DiscoverProposal, type DiscoverProvider, type DiscoverProviderInput, type DiscoverProviderResult, type DiscoverResult, type DiscoveryCandidate, DiscoveryCandidateSchema, type DiscoveryCandidateStatus, DiscoveryCandidateStatusSchema, type DiscoverySummary, DiscoverySummarySchema, type DraftClaim, type DraftContradiction, type DraftFinding, EXCERPT_ID_PATTERN, type Excerpt, type ExcerptDraft, type ExcerptOrigin, ExcerptOriginSchema, ExcerptSchema, type ExportOptions, type ExportSummary, type ExportUrlsOptions, type ExportUrlsResult, type ExtractClaimsOptions, type ExtractClaimsSummary, type ExtractionInput, type ExtractionResult, type Extractor, type ExtractorName, ExtractorNameSchema, FORBIDDEN_ACTIONS_ALWAYS, type FetchReceipt, FetchReceiptSchema, type FindingCategory, FindingCategorySchema, type FindingSeverity, FindingSeveritySchema, type ForbiddenInput, ForbiddenInputSchema, type FreezeOptions, type FreezeReceiptPayload, FreezeReceiptPayloadSchema, type FreezeRefusalPayload, FreezeRefusalPayloadSchema, type FreezeSummary, type FreshnessSummary, type GateCheckResult, GateCheckResultSchema, type GateCheckStatus, GateCheckStatusSchema, type GateConfig, GateConfigSchema, type GateFamily, GateFamilySchema, type GateInput, type GateVerdictEntry, GateVerdictEntrySchema, type GatherOptions, type GatherSummary, type HandoffMode$1 as HandoffMode, HandoffModeSchema$1 as HandoffModeSchema, HandoffNotFoundError, type HandoffOptions, type HandoffSummary, HeuristicClaimExtractor, HeuristicContradictionDetector, HeuristicExtractor, HeuristicReviewer, type IndexBuildOptions, type IndexBuildSummary, IndexNotBuiltError, type IndexQueryOptions, type IndexQuerySummary, type IndexStatus, IndexStatusSchema, type InitOptions, type InitResult, IntakeValidationError, type IntegrityCheck, IntegrityCheckSchema, InvalidSectionIdError, type InvalidateExtractionOptions, type InvalidateExtractionResult, type InvalidateReviewOptions, type InvalidateReviewResult, type InvalidationReceipt, InvalidationReceiptSchema, LlmHeuristicDiscoverProvider, type LoadOrBuildArgs, type LoadOrBuildResult, type MapOptions, type MapSummary, type NearDuplicateCluster, NearDuplicateClusterSchema, NoSourcesGatheredError, NoUrlsProvidedError, OllamaInternClaimExtractor, OllamaInternContradictionDetector, OllamaInternExtractor, OllamaInternReviewer, type OrphanClaimRow, OrphanClaimRowSchema, type OverlapAssessment, OverlapAssessmentSchema, type PackAuditPayload, PackAuditPayloadSchema, PackExistsError, PackNotFoundError, type PackVerdict, PackVerdictSchema, type PairedDraft, type PerSourceDensity, PerSourceDensitySchema, type PrimarySourceWaiver, PrimarySourceWaiverSchema, type PromoteOptions, type PromoteResult, type QueryHit, RESEARCH_OS_VERSION, type ReadinessSummary, type RecordType, type RejectOptions, type RejectResult, type Relevance, RelevanceSchema, ResearchOSError, type ResearchYaml, ResearchYamlSchema, type ResolutionStatus, ResolutionStatusSchema, type ReviewActive, ReviewActiveSchema, ReviewConfidenceSchema, type ReviewDecision, type ReviewDecisionCount, ReviewDecisionCountSchema, ReviewDecisionSchema, type ReviewFinding, ReviewFindingSchema, type ReviewInvalidationReceipt, ReviewInvalidationReceiptSchema, type ReviewSnapshot, ReviewSnapshotSchema, type ReviewState, ReviewStateSchema, type ReviewSummary, type Reviewer, type ReviewerInput, type ReviewerName, ReviewerNameSchema, type ReviewerResult, type RunGateOptions, type RunReviewOptions, type RunReviewSummary, SCHEMA_VERSION, type ScopeIntegritySummary, type ScopeOverlap, ScopeOverlapSchema, type ScopeWideningRiskRow, ScopeWideningRiskRowSchema, type Section, type SectionAcceptedSummary, SectionAcceptedSummarySchema, type SectionAddOptions, type SectionAddResult, SectionExistsError, type SectionGateResult$1 as SectionGateResult, SectionGateResultSchema, type SectionGatesYaml, SectionGatesYamlSchema, SectionNotFoundError, type SectionReport, SectionReportAcceptanceSchema, SectionReportContradictionsSchema, SectionReportExtractionSchema, type SectionReportOptions, type SectionReportResult, SectionReportReviewSchema, SectionReportSchema, SectionReportSourcesSchema, SectionSchema, type SectionState, SectionStateSchema, type SectionStatusChange, SectionStatusChangeSchema, type Severity, SeveritySchema, type SharedSource, SharedSourceSchema, type SourceCard, type SourceCardOverride, SourceCardOverrideSchema, SourceCardSchema, type SourceCounts, type SourceDiversityGapRow, SourceDiversityGapRowSchema, type SourceFetchPair, type SourceSummary, type SourceType$1 as SourceType, type SourceTypeGuess, SourceTypeGuessSchema, SourceTypeSchema, type StaleSourceRow, StaleSourceRowSchema, type SyncOptions, type SyncSummary, SynthesisNotReadyError, type SynthesisReadinessRow, SynthesisReadinessRowSchema, TemplateNotFoundError, type TriageDecision, TriageDecisionSchema, type TriageOptions, type TriageRunResult, type TriageSummary, TriageSummarySchema, type UnresolvedContradictionRow, UnresolvedContradictionRowSchema, type Verdict, VerdictSchema, type WaiverApplication, WaiverApplicationSchema, type WaiverDependency, WaiverDependencySchema, type WaiverEntry, WaiverEntrySchema, type WaiverSummary, type WeakSourceRow, WeakSourceRowSchema, type WorkspaceOptions, type WorkspaceSummary, add, aggregate, appendFetchLog, appendOverride, appendSectionSourceId, applySchema, applyWaivers, approve, assessScopeOverlap, audit, auditDensity, build, buildCard, buildExcerptIndex, buildResearchYaml, checkClaimIntegrity, checkContradiction, checkFreshness, checkScopeIntegrity, checkSectionBudget, checkSourceFloor, chunkKeyPoints, chunkRawText, collectUrls, dedupeAndValidate, defaultClaimExtractors, defaultContradictionDetectors, defaultExtractors, defaultReviewers, derive, deriveClaimReviews, deriveCrossSectionMap, discover, evidenceGrounded, exportRepoKnowledge, exportUrls, extract, extractClaimCitations, extractContradictionDisclosures, extractWaiverDisclosures, fetchOnce, freeze, gate, gather, getEffectivePublisher, getEffectiveSourceType, handoff, hasNegation, indexDbPath, init, invalidateExtraction, invalidateReview, isValidProfileName, jaccardSimilarity, ledgerPathFor, loadOrBuildLedger, makeReceiptId, makeSourceId, map, normalizeOllamaHost, openIndexDb, parseUrlsFileText, pickClaimExtractor, pickContradictionDetector, pickExtractor, pickReviewer, profileDir, promote, query, readActiveProfile, readOverrides, readTriagedClaimIds, readUrlsFile, reject, renderCoworkMaster, renderCrossSectionMapMarkdown, renderDecisionBrief, renderFinalReport, renderFreezeReceiptMarkdown, renderFreezeRefusalMarkdown, renderGateMarkdown, renderLedgerForPrompt, renderMarkdownView, renderOrphanClaimsMarkdown, renderPackAuditMarkdown, renderReviewMarkdown, renderScopeWideningRisksMarkdown, renderSourceDiversityGapsMarkdown, renderStaleSourcesMarkdown, renderSynthesisReadinessMarkdown, renderUnresolvedContradictionsMarkdown, renderWeakSourcesMarkdown, renderWorkingReport, reportSection, resolve, review, reviewActivePath, slugify, syncRepoKnowledge, tokenize, triage, validateSourceCardOverride, workspace, writeActiveProfile, writeSourceCard };