@mcp-graph-workflow/mcp-graph 5.8.0 → 5.9.1

package/dist/core/rag/node-indexer.js

@@ -0,0 +1,120 @@
+/**
+ * Node Indexer — indexes graph nodes into the Knowledge Store
+ * so they become discoverable via RAG search.
+ *
+ * Converts node content (title, description, AC, tags) into
+ * knowledge documents with sourceType "graph_node".
+ */
+import { KnowledgeStore } from "../store/knowledge-store.js";
+import { indexEntitiesForDoc } from "./entity-index-hook.js";
+import { logger } from "../utils/logger.js";
+/**
+ * Index a single graph node as a knowledge document.
+ * If a doc already exists for this node (same sourceId), it is replaced.
+ */
+export function indexNodeAsKnowledge(db, node) {
+    try {
+        const ks = new KnowledgeStore(db);
+        // Build rich content from node fields
+        const parts = [];
+        parts.push(`# ${node.title}`);
+        parts.push(`Type: ${node.type} | Status: ${node.status} | Priority: ${node.priority}`);
+        if (node.description) {
+            parts.push("", node.description);
+        }
+        if (node.acceptanceCriteria && node.acceptanceCriteria.length > 0) {
+            parts.push("", "## Acceptance Criteria");
+            for (const ac of node.acceptanceCriteria) {
+                parts.push(`- ${ac}`);
+            }
+        }
+        if (node.tags && node.tags.length > 0) {
+            parts.push("", `Tags: ${node.tags.join(", ")}`);
+        }
+        const content = parts.join("\n");
+        // Remove existing doc for this node (update = delete + insert)
+        removeNodeFromKnowledge(db, node.id);
+        // Insert as knowledge document
+        const doc = ks.insert({
+            sourceType: "graph_node",
+            sourceId: node.id,
+            title: node.title,
+            content,
+            chunkIndex: 0,
+            metadata: {
+                nodeType: node.type,
+                status: node.status,
+                priority: node.priority,
+            },
+        });
+        // Extract entities from the node content
+        indexEntitiesForDoc(db, doc.id);
+        logger.debug("node-indexer:indexed", { nodeId: node.id, docId: doc.id });
+    }
+    catch (err) {
+        logger.warn("node-indexer:index-failed", { nodeId: node.id, error: String(err) });
+    }
+}
+/**
+ * Remove a node's knowledge document.
+ */
+export function removeNodeFromKnowledge(db, nodeId) {
+    try {
+        const ks = new KnowledgeStore(db);
+        const docs = ks.getBySourceId(nodeId);
+        for (const doc of docs) {
+            // Clean up orphaned entity mentions before deleting the doc
+            try {
+                db.prepare("DELETE FROM kg_mentions WHERE doc_id = ?").run(doc.id);
+            }
+            catch {
+                // kg_mentions table may not exist yet — safe to ignore
+            }
+            ks.delete(doc.id);
+        }
+    }
+    catch (err) {
+        logger.warn("node-indexer:remove-failed", { nodeId, error: String(err) });
+    }
+}
+/**
+ * Index all existing graph nodes into the Knowledge Store.
+ * Used by reindex_knowledge with source "graph".
+ */
+export function indexAllNodes(db, projectId) {
+    try {
+        const rows = projectId
+            ? db.prepare("SELECT * FROM nodes WHERE project_id = ?").all(projectId)
+            : db.prepare("SELECT * FROM nodes").all();
+        let indexed = 0;
+        for (const row of rows) {
+            try {
+                const node = {
+                    id: row.id,
+                    type: row.type,
+                    title: row.title,
+                    description: row.description,
+                    status: row.status,
+                    priority: row.priority,
+                    tags: row.tags ? JSON.parse(row.tags) : undefined,
+                    acceptanceCriteria: row.acceptance_criteria ? JSON.parse(row.acceptance_criteria) : undefined,
+                    parentId: row.parent_id,
+                    createdAt: row.created_at,
+                    updatedAt: row.updated_at,
+                };
+                indexNodeAsKnowledge(db, node);
+                indexed++;
+            }
+            catch (rowErr) {
+                logger.warn("node-indexer:row-parse-failed", { rowId: row.id, error: String(rowErr) });
+            }
+        }
+        logger.info("node-indexer:all-indexed", { indexed });
+        return { indexed };
+    }
+    catch (err) {
+        logger.warn("node-indexer:index-all-failed", { error: String(err) });
+        return { indexed: 0 };
+    }
+}
+//# sourceMappingURL=node-indexer.js.map

package/dist/core/rag/node-indexer.js.map

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package/dist/core/rag/query-understanding.d.ts

@@ -8,6 +8,7 @@
  * - Query expansion with related terms
  * - Query rewriting for FTS5 optimization
  */
+import type Database from "better-sqlite3";
 export type QueryIntent = "search" | "how_to" | "status" | "debug" | "compare" | "history";
 export interface UnderstandingResult {
     originalQuery: string;
@@ -34,4 +35,26 @@ export declare function expandQuery(query: string): string[];
  * Analyzes a natural language query and returns structured understanding.
  */
 export declare function understandQuery(query: string): UnderstandingResult;
+export interface EntityMatch {
+    entityId: string;
+    name: string;
+    type: string;
+    score: number;
+}
+export interface DecomposedQuery extends UnderstandingResult {
+    /** High-level keys: intent + abstract concepts (expanded terms) */
+    highLevelKeys: string[];
+    /** Low-level keys: specific entities and technical terms */
+    lowLevelKeys: string[];
+    /** Entities matched from the Knowledge Graph */
+    entityMatches: EntityMatch[];
+}
+/**
+ * Decompose query into high/low level keys with KG entity matching.
+ * Extends understandQuery() — the original function is NOT modified.
+ *
+ * If the KG tables don't exist or are empty, entityMatches will be [].
+ * This ensures graceful degradation when KG is not populated.
+ */
+export declare function decomposeQuery(query: string, db: Database.Database): DecomposedQuery;
 //# sourceMappingURL=query-understanding.d.ts.map

package/dist/core/rag/query-understanding.d.ts.map

@@ -1 +1 @@
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package/dist/core/rag/query-understanding.js

@@ -10,6 +10,8 @@
  */
 import { tokenize } from "../search/tokenizer.js";
 import { extractEntities } from "./enrichment-pipeline.js";
+import { extractEntitiesFromText } from "./entity-extractor.js";
+import { EntityStore } from "./entity-store.js";
 import { logger } from "../utils/logger.js";
 // ── Intent detection patterns ────────────────────────────
 const INTENT_PATTERNS = [
@@ -120,4 +122,87 @@ export function understandQuery(query) {
         sourceTypeFilter,
     };
 }
+/**
+ * Decompose query into high/low level keys with KG entity matching.
+ * Extends understandQuery() — the original function is NOT modified.
+ *
+ * If the KG tables don't exist or are empty, entityMatches will be [].
+ * This ensures graceful degradation when KG is not populated.
+ */
+export function decomposeQuery(query, db) {
+    const base = understandQuery(query);
+    // High-level keys: intent + expanded terms (abstract concepts)
+    const highLevelKeys = [base.intent, ...base.expandedTerms];
+    // Low-level keys: extracted entities from the query text (specific terms)
+    const queryEntities = extractEntitiesFromText(query);
+    const lowLevelKeys = [
+        ...base.entities,
+        ...queryEntities.map((e) => e.name),
+    ];
+    // Deduplicate
+    const uniqueLowKeys = [...new Set(lowLevelKeys)];
+    // Match against Knowledge Graph entities
+    const entityMatches = [];
+    try {
+        const entityStore = new EntityStore(db);
+        if (entityStore.hasKgTables()) {
+            // Search KG for each extracted entity name
+            const searched = new Set();
+            for (const key of uniqueLowKeys) {
+                if (searched.has(key.toLowerCase()))
+                    continue;
+                searched.add(key.toLowerCase());
+                const matches = entityStore.findByName(key, 3);
+                for (const match of matches) {
+                    // Score: exact match = 1.0, partial = 0.6
+                    const score = match.normalizedName === key.toLowerCase() ? 1.0 : 0.6;
+                    entityMatches.push({
+                        entityId: match.id,
+                        name: match.name,
+                        type: match.type,
+                        score,
+                    });
+                }
+            }
+            // Also try expanded terms against KG
+            for (const term of base.expandedTerms) {
+                if (searched.has(term.toLowerCase()))
+                    continue;
+                searched.add(term.toLowerCase());
+                const matches = entityStore.findByName(term, 2);
+                for (const match of matches) {
+                    entityMatches.push({
+                        entityId: match.id,
+                        name: match.name,
+                        type: match.type,
+                        score: 0.4, // Lower score for expanded term matches
+                    });
+                }
+            }
+        }
+    }
+    catch {
+        // KG not available — graceful degradation
+        logger.debug("decomposeQuery: KG tables not available, skipping entity matching");
+    }
+    // Deduplicate entity matches by entityId, keeping highest score
+    const entityMap = new Map();
+    for (const em of entityMatches) {
+        const existing = entityMap.get(em.entityId);
+        if (!existing || em.score > existing.score) {
+            entityMap.set(em.entityId, em);
+        }
+    }
+    logger.debug("Query decomposed", {
+        highLevelKeys: highLevelKeys.length,
+        lowLevelKeys: uniqueLowKeys.length,
+        entityMatches: entityMap.size,
+    });
+    return {
+        ...base,
+        highLevelKeys,
+        lowLevelKeys: uniqueLowKeys,
+        entityMatches: Array.from(entityMap.values()).sort((a, b) => b.score - a.score),
+    };
+}
 //# sourceMappingURL=query-understanding.js.map

package/dist/core/rag/query-understanding.js.map

@@ -1 +1 @@
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package/dist/core/store/migrations.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"migrations.d.ts","sourceRoot":"","sources":["../../../src/core/store/migrations.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,QAAQ,MAAM,gBAAgB,CAAC;AAmc3C,wBAAgB,aAAa,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,GAAG,IAAI,CA6BzD;AAED,wBAAgB,WAAW,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,GAAG,IAAI,CAGvD"}
+{"version":3,"file":"migrations.d.ts","sourceRoot":"","sources":["../../../src/core/store/migrations.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,QAAQ,MAAM,gBAAgB,CAAC;AAsf3C,wBAAgB,aAAa,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,GAAG,IAAI,CA6BzD;AAED,wBAAgB,WAAW,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,GAAG,IAAI,CAGvD"}

package/dist/core/store/migrations.js

@@ -439,6 +439,57 @@ const migrations = [
       CREATE INDEX IF NOT EXISTS idx_kusage_action ON knowledge_usage_log(action);
     `,
     },
+    {
+        version: 12,
+        description: "Knowledge Graph — entities, relations, mentions with FTS5 index",
+        sql: `
+      CREATE TABLE IF NOT EXISTS kg_entities (
+        id              TEXT PRIMARY KEY,
+        name            TEXT NOT NULL,
+        type            TEXT NOT NULL,
+        normalized_name TEXT NOT NULL,
+        aliases         TEXT DEFAULT '[]',
+        description     TEXT,
+        metadata        TEXT DEFAULT '{}',
+        mention_count   INTEGER DEFAULT 0,
+        created_at      TEXT NOT NULL,
+        updated_at      TEXT NOT NULL
+      );
+
+      CREATE INDEX IF NOT EXISTS idx_kg_entities_type ON kg_entities(type);
+      CREATE INDEX IF NOT EXISTS idx_kg_entities_normalized ON kg_entities(normalized_name);
+
+      CREATE VIRTUAL TABLE IF NOT EXISTS kg_entities_fts USING fts5(
+        name, aliases, description
+      );
+
+      CREATE TABLE IF NOT EXISTS kg_relations (
+        id              TEXT PRIMARY KEY,
+        from_entity_id  TEXT NOT NULL REFERENCES kg_entities(id),
+        to_entity_id    TEXT NOT NULL REFERENCES kg_entities(id),
+        relation_type   TEXT NOT NULL,
+        weight          REAL DEFAULT 1.0,
+        source_doc_id   TEXT,
+        created_at      TEXT NOT NULL,
+        UNIQUE(from_entity_id, to_entity_id, relation_type)
+      );
+
+      CREATE INDEX IF NOT EXISTS idx_kg_relations_from ON kg_relations(from_entity_id);
+      CREATE INDEX IF NOT EXISTS idx_kg_relations_to ON kg_relations(to_entity_id);
+
+      CREATE TABLE IF NOT EXISTS kg_mentions (
+        id          TEXT PRIMARY KEY,
+        entity_id   TEXT NOT NULL REFERENCES kg_entities(id),
+        doc_id      TEXT NOT NULL,
+        context     TEXT,
+        position    INTEGER DEFAULT 0,
+        created_at  TEXT NOT NULL
+      );
+
+      CREATE INDEX IF NOT EXISTS idx_kg_mentions_entity ON kg_mentions(entity_id);
+      CREATE INDEX IF NOT EXISTS idx_kg_mentions_doc ON kg_mentions(doc_id);
+    `,
+    },
 ];
 export function runMigrations(db) {
     // Create migrations tracking table

package/dist/core/store/migrations.js.map

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package/dist/mcp/tools/clone-node.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"clone-node.d.ts","sourceRoot":"","sources":["../../../src/mcp/tools/clone-node.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACzE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kCAAkC,CAAC;AA0EpE,wBAAgB,iBAAiB,CAAC,MAAM,EAAE,SAAS,EAAE,KAAK,EAAE,WAAW,GAAG,IAAI,CAwC7E"}
+{"version":3,"file":"clone-node.d.ts","sourceRoot":"","sources":["../../../src/mcp/tools/clone-node.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACzE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kCAAkC,CAAC;AA2EpE,wBAAgB,iBAAiB,CAAC,MAAM,EAAE,SAAS,EAAE,KAAK,EAAE,WAAW,GAAG,IAAI,CA4C7E"}

package/dist/mcp/tools/clone-node.js

@@ -4,6 +4,7 @@ import { generateId } from "../../core/utils/id.js";
 import { now } from "../../core/utils/time.js";
 import { logger } from "../../core/utils/logger.js";
 import { mcpText, mcpError } from "../response-helpers.js";
+import { indexNodeAsKnowledge } from "../../core/rag/node-indexer.js";
 function cloneSingle(store, source, parentId, timestamp) {
     const clone = {
         id: generateId("node"),
@@ -77,10 +78,14 @@ export function registerCloneNode(server, store) {
         if (deep) {
             const cloned = [];
             cloneDeep(store, id, parentForClone, timestamp, cloned);
+            for (const c of cloned) {
+                indexNodeAsKnowledge(store.getDb(), c);
+            }
             logger.info("tool:clone_node:ok", { sourceId: id, deep: true, clonedCount: cloned.length });
             return mcpText({ ok: true, clonedCount: cloned.length, nodes: cloned });
         }
         const clone = cloneSingle(store, source, parentForClone, timestamp);
+        indexNodeAsKnowledge(store.getDb(), clone);
         logger.info("tool:clone_node:ok", { sourceId: id, deep: false, cloneId: clone.id });
         return mcpText({ ok: true, node: clone });
     });

package/dist/mcp/tools/clone-node.js.map

@@ -1 +1 @@
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+{"version":3,"file":"clone-node.js","sourceRoot":"","sources":["../../../src/mcp/tools/clone-node.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,QAAQ,CAAC;AAI3B,OAAO,EAAE,iBAAiB,EAAE,MAAM,4BAA4B,CAAC;AAC/D,OAAO,EAAE,UAAU,EAAE,MAAM,wBAAwB,CAAC;AACpD,OAAO,EAAE,GAAG,EAAE,MAAM,0BAA0B,CAAC;AAC/C,OAAO,EAAE,MAAM,EAAE,MAAM,4BAA4B,CAAC;AACpD,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,wBAAwB,CAAC;AAC3D,OAAO,EAAE,oBAAoB,EAAE,MAAM,gCAAgC,CAAC;AAEtE,SAAS,WAAW,CAClB,KAAkB,EAClB,MAAiB,EACjB,QAAmC,EACnC,SAAiB;IAEjB,MAAM,KAAK,GAAc;QACvB,EAAE,EAAE,UAAU,CAAC,MAAM,CAAC;QACtB,IAAI,EAAE,MAAM,CAAC,IAAI;QACjB,KAAK,EAAE,MAAM,CAAC,KAAK;QACnB,WAAW,EAAE,MAAM,CAAC,WAAW;QAC/B,MAAM,EAAE,SAAS;QACjB,QAAQ,EAAE,MAAM,CAAC,QAAQ;QACzB,MAAM,EAAE,MAAM,CAAC,MAAM;QACrB,eAAe,EAAE,MAAM,CAAC,eAAe;QACvC,IAAI,EAAE,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,SAAS;QAChD,QAAQ,EAAE,QAAQ;QAClB,MAAM,EAAE,MAAM,CAAC,MAAM;QACrB,kBAAkB,EAAE,MAAM,CAAC,kBAAkB,CAAC,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC,kBAAkB,CAAC,CAAC,CAAC,CAAC,SAAS;QAC1F,OAAO,EAAE,KAAK;QACd,QAAQ,EAAE,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,GAAG,MAAM,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,SAAS;QAC9D,SAAS,EAAE,SAAS;QACpB,SAAS,EAAE,SAAS;KACrB,CAAC;IAEF,KAAK,CAAC,UAAU,CAAC,KAAK,CAAC,CAAC;IAExB,IAAI,QAAQ,EAAE,CAAC;QACb,KAAK,CAAC,UAAU,CAAC;YACf,EAAE,EAAE,UAAU,CAAC,MAAM,CAAC;YACtB,IAAI,EAAE,QAAQ;YACd,EAAE,EAAE,KAAK,CAAC,EAAE;YACZ,YAAY,EAAE,WAA2B;YACzC,SAAS,EAAE,SAAS;SACrB,CAAC,CAAC;QACH,KAAK,CAAC,UAAU,CAAC;YACf,EAAE,EAAE,UAAU,CAAC,MAAM,CAAC;YACtB,IAAI,EAAE,KAAK,CAAC,EAAE;YACd,EAAE,EAAE,QAAQ;YACZ,YAAY,EAAE,UAA0B;YACxC,SAAS,EAAE,SAAS;SACrB,CAAC,CAAC;IACL,CAAC;IAED,OAAO,KAAK,CAAC;AACf,CAAC;AAED,SAAS,SAAS,CAChB,KAAkB,EAClB,QAAgB,EAChB,QAAmC,EACnC,SAAiB,EACjB,MAAmB;IAEnB,MAAM,MAAM,GAAG,KAAK,CAAC,WAAW,CAAC,QAAQ,CAAC,CAAC;IAC3C,IAAI,CAAC,MAAM;QAAE,OAAO;IAEpB,MAAM,KAAK,GAAG,WAAW,CAAC,KAAK,EAAE,MAAM,EAAE,QAAQ,EAAE,SAAS,CAAC,CAAC;IAC9D,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;IAEnB,MAAM,QAAQ,GAAG,KAAK,CAAC,aAAa,CAAC,QAAQ,CAAC,CAAC;IAC/C,KAAK,MAAM,KAAK,IAAI,QAAQ,EAAE,CAAC;QAC7B,SAAS,CAAC,KAAK,EAAE,KAAK,CAAC,EAAE,EAAE,KAAK,CAAC,EAAE,EAAE,SAAS,EAAE,MAAM,CAAC,CAAC;IAC1D,CAAC;AACH,CAAC;AAED,MAAM,UAAU,iBAAiB,CAAC,MAAiB,EAAE,KAAkB;IACrE,MAAM,CAAC,IAAI,CACT,YAAY,EACZ,6CAA6C,EAC7C;QACE,EAAE,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,sBAAsB,CAAC;QAC/C,IAAI,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,6CAA6C,CAAC;QACpF,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,+BAA+B,CAAC;KAC7E,EACD,KAAK,EAAE,EAAE,EAAE,EAAE,IAAI,EAAE,WAAW,EAAE,EAAE,EAAE;QAClC,MAAM,CAAC,KAAK,CAAC,iBAAiB,EAAE,EAAE,QAAQ,EAAE,EAAE,EAAE,IAAI,EAAE,CAAC,CAAC;QACxD,MAAM,MAAM,GAAG,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC;QACrC,IAAI,CAAC,MAAM,EAAE,CAAC;YACZ,MAAM,GAAG,GAAG,IAAI,iBAAiB,CAAC,EAAE,CAAC,CAAC;YACtC,OAAO,QAAQ,CAAC,GAAG,CAAC,CAAC;QACvB,CAAC;QAED,IAAI,WAAW,EAAE,CAAC;YAChB,MAAM,MAAM,GAAG,KAAK,CAAC,WAAW,CAAC,WAAW,CAAC,CAAC;YAC9C,IAAI,CAAC,MAAM,EAAE,CAAC;gBACZ,MAAM,GAAG,GAAG,IAAI,iBAAiB,CAAC,WAAW,CAAC,CAAC;gBAC/C,OAAO,QAAQ,CAAC,qBAAqB,GAAG,CAAC,OAAO,EAAE,CAAC,CAAC;YACtD,CAAC;QACH,CAAC;QAED,MAAM,SAAS,GAAG,GAAG,EAAE,CAAC;QACxB,MAAM,cAAc,GAAG,WAAW,IAAI,MAAM,CAAC,QAAQ,CAAC;QAEtD,IAAI,IAAI,EAAE,CAAC;YACT,MAAM,MAAM,GAAgB,EAAE,CAAC;YAC/B,SAAS,CAAC,KAAK,EAAE,EAAE,EAAE,cAAc,EAAE,SAAS,EAAE,MAAM,CAAC,CAAC;YACxD,KAAK,MAAM,CAAC,IAAI,MAAM,EAAE,CAAC;gBACvB,oBAAoB,CAAC,KAAK,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC,CAAC;YACzC,CAAC;YACD,MAAM,CAAC,IAAI,CAAC,oBAAoB,EAAE,EAAE,QAAQ,EAAE,EAAE,EAAE,IAAI,EAAE,IAAI,EAAE,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,CAAC,CAAC;YAC5F,OAAO,OAAO,CAAC,EAAE,EAAE,EAAE,IAAI,EAAE,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,CAAC,CAAC;QAC1E,CAAC;QAED,MAAM,KAAK,GAAG,WAAW,CAAC,KAAK,EAAE,MAAM,EAAE,cAAc,EAAE,SAAS,CAAC,CAAC;QACpE,oBAAoB,CAAC,KAAK,CAAC,KAAK,EAAE,EAAE,KAAK,CAAC,CAAC;QAC3C,MAAM,CAAC,IAAI,CAAC,oBAAoB,EAAE,EAAE,QAAQ,EAAE,EAAE,EAAE,IAAI,EAAE,KAAK,EAAE,OAAO,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,CAAC;QACpF,OAAO,OAAO,CAAC,EAAE,EAAE,EAAE,IAAI,EAAE,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC;IAC5C,CAAC,CACF,CAAC;AACJ,CAAC"}

package/dist/mcp/tools/import-graph.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"import-graph.d.ts","sourceRoot":"","sources":["../../../src/mcp/tools/import-graph.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACzE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kCAAkC,CAAC;AAMpE,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,SAAS,EAAE,KAAK,EAAE,WAAW,GAAG,IAAI,CA+E/E"}
+{"version":3,"file":"import-graph.d.ts","sourceRoot":"","sources":["../../../src/mcp/tools/import-graph.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACzE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kCAAkC,CAAC;AAQpE,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,SAAS,EAAE,KAAK,EAAE,WAAW,GAAG,IAAI,CAuG/E"}

package/dist/mcp/tools/import-graph.js

@@ -3,6 +3,8 @@ import { readFileSync } from "node:fs";
 import { mergeGraph } from "../../core/importer/import-graph.js";
 import { logger } from "../../core/utils/logger.js";
 import { mcpText, mcpError } from "../response-helpers.js";
+import { indexEntitiesForSource } from "../../core/rag/entity-index-hook.js";
+import { indexNodeAsKnowledge } from "../../core/rag/node-indexer.js";
 export function registerImportGraph(server, store) {
     server.tool("import_graph", "Import and merge an exported graph JSON into the local graph without overriding existing data. " +
         "Nodes that already exist locally are kept (local wins). New nodes and edges are added. " +
@@ -47,9 +49,29 @@ export function registerImportGraph(server, store) {
         catch {
             return mcpError("Invalid JSON: failed to parse the graph document.");
         }
-        // 3. Merge
+        // 3. Capture existing node IDs before merge (to skip re-indexing)
+        const activeProject = store.getActiveProject();
+        const existingNodeIds = new Set((activeProject?.id
+            ? store.getDb().prepare("SELECT id FROM nodes WHERE project_id = ?").all(activeProject.id)
+            : store.getDb().prepare("SELECT id FROM nodes").all()).map((r) => r.id));
+        // 4. Merge
         try {
             const result = mergeGraph(store, parsed, { dryRun: dry_run });
+            // Index only newly inserted nodes into Knowledge Store + KG (skip on dry_run)
+            if (!dry_run && result.nodesInserted > 0) {
+                try {
+                    for (const node of parsed.nodes) {
+                        // Only index nodes that were actually inserted (not pre-existing)
+                        if (!existingNodeIds.has(node.id)) {
+                            indexNodeAsKnowledge(store.getDb(), node);
+                        }
+                    }
+                    indexEntitiesForSource(store.getDb(), "graph_node");
+                }
+                catch {
+                    logger.warn("import_graph:indexing-failed");
+                }
+            }
             logger.info("tool:import_graph:ok", {
                 sourceProject: result.sourceProject,
                 nodesInserted: result.nodesInserted,

package/dist/mcp/tools/import-graph.js.map

@@ -1 +1 @@
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+{"version":3,"file":"import-graph.js","sourceRoot":"","sources":["../../../src/mcp/tools/import-graph.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,QAAQ,CAAC;AAC3B,OAAO,EAAE,YAAY,EAAE,MAAM,SAAS,CAAC;AAGvC,OAAO,EAAE,UAAU,EAAE,MAAM,qCAAqC,CAAC;AAEjE,OAAO,EAAE,MAAM,EAAE,MAAM,4BAA4B,CAAC;AACpD,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,wBAAwB,CAAC;AAC3D,OAAO,EAAE,sBAAsB,EAAE,MAAM,qCAAqC,CAAC;AAC7E,OAAO,EAAE,oBAAoB,EAAE,MAAM,gCAAgC,CAAC;AAEtE,MAAM,UAAU,mBAAmB,CAAC,MAAiB,EAAE,KAAkB;IACvE,MAAM,CAAC,IAAI,CACT,cAAc,EACd,iGAAiG;QACjG,yFAAyF;QACzF,oDAAoD;QACpD,sFAAsF,EACtF;QACE,KAAK,EAAE,CAAC;aACL,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CAAC,0EAA0E,CAAC;QACvF,QAAQ,EAAE,CAAC;aACR,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CAAC,2DAA2D,CAAC;QACxE,OAAO,EAAE,CAAC;aACP,OAAO,EAAE;aACT,QAAQ,EAAE;aACV,OAAO,CAAC,KAAK,CAAC;aACd,QAAQ,CAAC,kFAAkF,CAAC;KAChG,EACD,KAAK,EAAE,EAAE,KAAK,EAAE,QAAQ,EAAE,OAAO,EAAE,EAAE,EAAE;QACrC,MAAM,CAAC,IAAI,CAAC,mBAAmB,EAAE,EAAE,QAAQ,EAAE,CAAC,CAAC,KAAK,EAAE,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,CAAC,CAAC;QAEnF,qDAAqD;QACrD,IAAI,UAAkB,CAAC;QACvB,IAAI,KAAK,EAAE,CAAC;YACV,UAAU,GAAG,KAAK,CAAC;QACrB,CAAC;aAAM,IAAI,QAAQ,EAAE,CAAC;YACpB,IAAI,CAAC;gBACH,UAAU,GAAG,YAAY,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;YAC/C,CAAC;YAAC,OAAO,GAAG,EAAE,CAAC;gBACb,OAAO,QAAQ,CAAC,wBAAwB,QAAQ,MAAM,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;YAC5G,CAAC;QACH,CAAC;aAAM,CAAC;YACN,OAAO,QAAQ,CAAC,kFAAkF,CAAC,CAAC;QACtG,CAAC;QAED,gBAAgB;QAChB,IAAI,MAAqB,CAAC;QAC1B,IAAI,CAAC;YACH,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,UAAU,CAAkB,CAAC;QACnD,CAAC;QAAC,MAAM,CAAC;YACP,OAAO,QAAQ,CAAC,mDAAmD,CAAC,CAAC;QACvE,CAAC;QAED,kEAAkE;QAClE,MAAM,aAAa,GAAG,KAAK,CAAC,gBAAgB,EAAE,CAAC;QAC/C,MAAM,eAAe,GAAG,IAAI,GAAG,CAC7B,CAAC,aAAa,EAAE,EAAE;YAChB,CAAC,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC,OAAO,CAAC,2CAA2C,CAAC,CAAC,GAAG,CAAC,aAAa,CAAC,EAAE,CAA0B;YACnH,CAAC,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC,OAAO,CAAC,sBAAsB,CAAC,CAAC,GAAG,EAA2B,CAC/E,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CACnB,CAAC;QAEF,WAAW;QACX,IAAI,CAAC;YACH,MAAM,MAAM,GAAG,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE,MAAM,EAAE,OAAO,EAAE,CAAC,CAAC;YAE9D,8EAA8E;YAC9E,IAAI,CAAC,OAAO,IAAI,MAAM,CAAC,aAAa,GAAG,CAAC,EAAE,CAAC;gBACzC,IAAI,CAAC;oBACH,KAAK,MAAM,IAAI,IAAI,MAAM,CAAC,KAAK,EAAE,CAAC;wBAChC,kEAAkE;wBAClE,IAAI,CAAC,eAAe,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,EAAE,CAAC;4BAClC,oBAAoB,CAAC,KAAK,CAAC,KAAK,EAAE,EAAE,IAAI,CAAC,CAAC;wBAC5C,CAAC;oBACH,CAAC;oBACD,sBAAsB,CAAC,KAAK,CAAC,KAAK,EAAE,EAAE,YAAY,CAAC,CAAC;gBACtD,CAAC;gBAAC,MAAM,CAAC;oBACP,MAAM,CAAC,IAAI,CAAC,8BAA8B,CAAC,CAAC;gBAC9C,CAAC;YACH,CAAC;YAED,MAAM,CAAC,IAAI,CAAC,sBAAsB,EAAE;gBAClC,aAAa,EAAE,MAAM,CAAC,aAAa;gBACnC,aAAa,EAAE,MAAM,CAAC,aAAa;gBACnC,YAAY,EAAE,MAAM,CAAC,YAAY;gBACjC,aAAa,EAAE,MAAM,CAAC,aAAa;gBACnC,YAAY,EAAE,MAAM,CAAC,YAAY;gBACjC,aAAa,EAAE,MAAM,CAAC,aAAa;gBACnC,MAAM,EAAE,OAAO;aAChB,CAAC,CAAC;YAEH,OAAO,OAAO,CAAC;gBACb,EAAE,EAAE,IAAI;gBACR,MAAM,EAAE,OAAO;gBACf,aAAa,EAAE,MAAM,CAAC,aAAa;gBACnC,aAAa,EAAE,MAAM,CAAC,aAAa;gBACnC,YAAY,EAAE,MAAM,CAAC,YAAY;gBACjC,aAAa,EAAE,MAAM,CAAC,aAAa;gBACnC,YAAY,EAAE,MAAM,CAAC,YAAY;gBACjC,aAAa,EAAE,MAAM,CAAC,aAAa;gBACnC,OAAO,EAAE,OAAO;oBACd,CAAC,CAAC,0BAA0B,MAAM,CAAC,aAAa,cAAc,MAAM,CAAC,aAAa,gBAAgB,MAAM,CAAC,aAAa,MAAM,MAAM,CAAC,YAAY,cAAc,MAAM,CAAC,YAAY,+BAA+B;oBAC/M,CAAC,CAAC,UAAU,MAAM,CAAC,aAAa,cAAc,MAAM,CAAC,aAAa,gBAAgB,MAAM,CAAC,aAAa,MAAM,MAAM,CAAC,YAAY,cAAc,MAAM,CAAC,YAAY,sDAAsD;aACzN,CAAC,CAAC;QACL,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,OAAO,QAAQ,CAAC,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC;QAC5D,CAAC;IACH,CAAC,CACF,CAAC;AACJ,CAAC"}

package/dist/mcp/tools/import-prd.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"import-prd.d.ts","sourceRoot":"","sources":["../../../src/mcp/tools/import-prd.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACzE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kCAAkC,CAAC;AASpE,wBAAgB,iBAAiB,CAAC,MAAM,EAAE,SAAS,EAAE,KAAK,EAAE,WAAW,GAAG,IAAI,CAgF7E"}
+{"version":3,"file":"import-prd.d.ts","sourceRoot":"","sources":["../../../src/mcp/tools/import-prd.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACzE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kCAAkC,CAAC;AAUpE,wBAAgB,iBAAiB,CAAC,MAAM,EAAE,SAAS,EAAE,KAAK,EAAE,WAAW,GAAG,IAAI,CAiF7E"}

package/dist/mcp/tools/import-prd.js

@@ -5,6 +5,7 @@ import { extractEntities } from "../../core/parser/extract.js";
 import { convertToGraph } from "../../core/importer/prd-to-graph.js";
 import { KnowledgeStore } from "../../core/store/knowledge-store.js";
 import { indexPrdContent } from "../../core/rag/prd-indexer.js";
+import { indexEntitiesForSource } from "../../core/rag/entity-index-hook.js";
 import { logger } from "../../core/utils/logger.js";
 import { mcpText, mcpError } from "../response-helpers.js";
 export function registerImportPrd(server, store) {
@@ -46,6 +47,7 @@ export function registerImportPrd(server, store) {
             const knowledgeStore = new KnowledgeStore(store.getDb());
             const indexResult = indexPrdContent(knowledgeStore, content, sourceFileName, "ANALYZE");
             knowledgeDocsIndexed = indexResult.documentsIndexed;
+            indexEntitiesForSource(store.getDb(), "prd");
         }
         catch (err) {
             logger.warn("tool:import_prd:knowledge_index_failed", { error: String(err) });

package/dist/mcp/tools/import-prd.js.map

@@ -1 +1 @@
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package/dist/mcp/tools/journey.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"journey.d.ts","sourceRoot":"","sources":["../../../src/mcp/tools/journey.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACzE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kCAAkC,CAAC;AAapE,wBAAgB,eAAe,CAAC,MAAM,EAAE,SAAS,EAAE,KAAK,EAAE,WAAW,GAAG,IAAI,CAmK3E"}
+{"version":3,"file":"journey.d.ts","sourceRoot":"","sources":["../../../src/mcp/tools/journey.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACzE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kCAAkC,CAAC;AAcpE,wBAAgB,eAAe,CAAC,MAAM,EAAE,SAAS,EAAE,KAAK,EAAE,WAAW,GAAG,IAAI,CAoK3E"}

package/dist/mcp/tools/journey.js

@@ -2,6 +2,7 @@ import { z } from "zod/v4";
 import { JourneyStore } from "../../core/journey/journey-store.js";
 import { KnowledgeStore } from "../../core/store/knowledge-store.js";
 import { indexJourneyMaps } from "../../core/rag/journey-indexer.js";
+import { indexEntitiesForSource } from "../../core/rag/entity-index-hook.js";
 import { logger } from "../../core/utils/logger.js";
 import { mcpText, mcpError } from "../response-helpers.js";
 function getJourneyStore(store) {
@@ -140,6 +141,7 @@ export function registerJourney(server, store) {
             case "index": {
                 const knowledgeStore = new KnowledgeStore(store.getDb());
                 const result = indexJourneyMaps(knowledgeStore, journeyStore);
+                indexEntitiesForSource(store.getDb(), "journey");
                 logger.info("tool:journey:index", { mapsIndexed: result.mapsIndexed, documentsIndexed: result.documentsIndexed });
                 return mcpText({
                     action: "index",

package/dist/mcp/tools/journey.js.map

@@ -1 +1 @@
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package/dist/mcp/tools/manage-skill.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"manage-skill.d.ts","sourceRoot":"","sources":["../../../src/mcp/tools/manage-skill.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAGH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACzE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kCAAkC,CAAC;AAgBpE,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,SAAS,EAAE,KAAK,EAAE,WAAW,GAAG,IAAI,CAqJ/E"}
+{"version":3,"file":"manage-skill.d.ts","sourceRoot":"","sources":["../../../src/mcp/tools/manage-skill.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAGH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACzE,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,kCAAkC,CAAC;AAiBpE,wBAAgB,mBAAmB,CAAC,MAAM,EAAE,SAAS,EAAE,KAAK,EAAE,WAAW,GAAG,IAAI,CAuJ/E"}

package/dist/mcp/tools/manage-skill.js

@@ -8,6 +8,7 @@ import { getBuiltInSkills, getSkillsByPhase, getSkillByName } from "../../core/s
 import { CustomSkillInputSchema } from "../../schemas/skill.schema.js";
 import { logger } from "../../core/utils/logger.js";
 import { mcpText, mcpError } from "../response-helpers.js";
+import { indexEntitiesForSource } from "../../core/rag/entity-index-hook.js";
 export function registerManageSkill(server, store) {
     server.tool("manage_skill", "Manage skills: list built-in skills, enable/disable, CRUD custom skills.", {
         action: z
@@ -94,6 +95,7 @@ export function registerManageSkill(server, store) {
                         return mcpError(`Validation failed: ${JSON.stringify(parsed.error.issues)}`);
                     }
                     const created = createCustomSkill(db, projectId, parsed.data);
+                    indexEntitiesForSource(db, "skill");
                     logger.info("tool:manage_skill:created", { id: created.id, name: created.name });
                     return mcpText(created);
                 }
@@ -102,6 +104,7 @@ export function registerManageSkill(server, store) {
                         return mcpError("skillId and data required for update");
                     }
                     const updated = updateCustomSkill(db, projectId, skillId, data);
+                    indexEntitiesForSource(db, "skill");
                     return mcpText(updated);
                 }
                 case "delete": {