@mcp-graph-workflow/mcp-graph 5.2.0 → 5.3.0

package/dist/core/code/code-store.js

@@ -0,0 +1,228 @@
+/**
+ * SQLite CRUD operations for code_symbols and code_relations tables.
+ * Uses the same Database instance from SqliteStore (shared DB).
+ */
+import { generateId } from "../utils/id.js";
+import { now } from "../utils/time.js";
+// ── Mappers ──────────────────────────────────────────────
+function rowToSymbol(row) {
+    return {
+        id: row.id,
+        projectId: row.project_id,
+        name: row.name,
+        kind: row.kind,
+        file: row.file,
+        startLine: row.start_line,
+        endLine: row.end_line,
+        exported: row.exported === 1,
+        modulePath: row.module_path,
+        signature: row.signature,
+        metadata: row.metadata ? JSON.parse(row.metadata) : undefined,
+        indexedAt: row.indexed_at,
+    };
+}
+function rowToRelation(row) {
+    return {
+        id: row.id,
+        projectId: row.project_id,
+        fromSymbol: row.from_symbol,
+        toSymbol: row.to_symbol,
+        type: row.type,
+        file: row.file,
+        line: row.line,
+        metadata: row.metadata ? JSON.parse(row.metadata) : undefined,
+        indexedAt: row.indexed_at,
+    };
+}
+function rowToMeta(row) {
+    return {
+        projectId: row.project_id,
+        lastIndexed: row.last_indexed,
+        fileCount: row.file_count,
+        symbolCount: row.symbol_count,
+        relationCount: row.relation_count,
+        gitHash: row.git_hash,
+    };
+}
+// ── CodeStore ────────────────────────────────────────────
+export class CodeStore {
+    db;
+    constructor(db) {
+        this.db = db;
+    }
+    // ── Symbols ──────────────────────────────────────
+    insertSymbol(symbol) {
+        const id = generateId("csym");
+        const indexedAt = now();
+        this.db
+            .prepare(`INSERT INTO code_symbols (id, project_id, name, kind, file, start_line, end_line, exported, module_path, signature, metadata, indexed_at)
+         VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`)
+            .run(id, symbol.projectId, symbol.name, symbol.kind, symbol.file, symbol.startLine, symbol.endLine, symbol.exported ? 1 : 0, symbol.modulePath ?? null, symbol.signature ?? null, symbol.metadata ? JSON.stringify(symbol.metadata) : null, indexedAt);
+        return { ...symbol, id, indexedAt };
+    }
+    insertSymbolsBulk(symbols) {
+        const indexedAt = now();
+        const stmt = this.db.prepare(`INSERT INTO code_symbols (id, project_id, name, kind, file, start_line, end_line, exported, module_path, signature, metadata, indexed_at)
+       VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`);
+        const insertMany = this.db.transaction((syms) => {
+            for (const s of syms) {
+                stmt.run(generateId("csym"), s.projectId, s.name, s.kind, s.file, s.startLine, s.endLine, s.exported ? 1 : 0, s.modulePath ?? null, s.signature ?? null, s.metadata ? JSON.stringify(s.metadata) : null, indexedAt);
+            }
+            return syms.length;
+        });
+        return insertMany(symbols);
+    }
+    getSymbol(id) {
+        const row = this.db
+            .prepare("SELECT * FROM code_symbols WHERE id = ?")
+            .get(id);
+        return row ? rowToSymbol(row) : null;
+    }
+    findSymbolsByName(name, projectId) {
+        const rows = this.db
+            .prepare("SELECT * FROM code_symbols WHERE name = ? AND project_id = ?")
+            .all(name, projectId);
+        return rows.map(rowToSymbol);
+    }
+    findSymbolsByFile(file, projectId) {
+        const rows = this.db
+            .prepare("SELECT * FROM code_symbols WHERE file = ? AND project_id = ?")
+            .all(file, projectId);
+        return rows.map(rowToSymbol);
+    }
+    findSymbolAtLine(file, line, projectId) {
+        const row = this.db
+            .prepare("SELECT * FROM code_symbols WHERE file = ? AND start_line <= ? AND end_line >= ? AND project_id = ? ORDER BY (end_line - start_line) ASC LIMIT 1")
+            .get(file, line, line, projectId);
+        return row ? rowToSymbol(row) : null;
+    }
+    getAllSymbols(projectId, limit = 5000) {
+        const rows = this.db
+            .prepare("SELECT * FROM code_symbols WHERE project_id = ? LIMIT ?")
+            .all(projectId, limit);
+        return rows.map(rowToSymbol);
+    }
+    deleteSymbolsByFile(file, projectId) {
+        // First delete relations referencing these symbols
+        const symbolIds = this.db
+            .prepare("SELECT id FROM code_symbols WHERE file = ? AND project_id = ?")
+            .all(file, projectId);
+        if (symbolIds.length === 0)
+            return 0;
+        const ids = symbolIds.map((r) => r.id);
+        const placeholders = ids.map(() => "?").join(",");
+        this.db
+            .prepare(`DELETE FROM code_relations WHERE from_symbol IN (${placeholders}) OR to_symbol IN (${placeholders})`)
+            .run(...ids, ...ids);
+        const result = this.db
+            .prepare("DELETE FROM code_symbols WHERE file = ? AND project_id = ?")
+            .run(file, projectId);
+        return result.changes;
+    }
+    deleteAllSymbols(projectId) {
+        this.db.transaction(() => {
+            this.db.prepare("DELETE FROM code_relations WHERE project_id = ?").run(projectId);
+            this.db.prepare("DELETE FROM code_symbols WHERE project_id = ?").run(projectId);
+        })();
+    }
+    // ── Relations ────────────────────────────────────
+    insertRelation(relation) {
+        const id = generateId("crel");
+        const indexedAt = now();
+        this.db
+            .prepare(`INSERT INTO code_relations (id, project_id, from_symbol, to_symbol, type, file, line, metadata, indexed_at)
+         VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)`)
+            .run(id, relation.projectId, relation.fromSymbol, relation.toSymbol, relation.type, relation.file ?? null, relation.line ?? null, relation.metadata ? JSON.stringify(relation.metadata) : null, indexedAt);
+        return { ...relation, id, indexedAt };
+    }
+    insertRelationsBulk(relations) {
+        const indexedAt = now();
+        const stmt = this.db.prepare(`INSERT INTO code_relations (id, project_id, from_symbol, to_symbol, type, file, line, metadata, indexed_at)
+       VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)`);
+        const insertMany = this.db.transaction((rels) => {
+            for (const r of rels) {
+                stmt.run(generateId("crel"), r.projectId, r.fromSymbol, r.toSymbol, r.type, r.file ?? null, r.line ?? null, r.metadata ? JSON.stringify(r.metadata) : null, indexedAt);
+            }
+            return rels.length;
+        });
+        return insertMany(relations);
+    }
+    getRelationsFrom(symbolId) {
+        const rows = this.db
+            .prepare("SELECT * FROM code_relations WHERE from_symbol = ?")
+            .all(symbolId);
+        return rows.map(rowToRelation);
+    }
+    getRelationsTo(symbolId) {
+        const rows = this.db
+            .prepare("SELECT * FROM code_relations WHERE to_symbol = ?")
+            .all(symbolId);
+        return rows.map(rowToRelation);
+    }
+    getRelationsBetween(fromId, toId) {
+        const rows = this.db
+            .prepare("SELECT * FROM code_relations WHERE from_symbol = ? AND to_symbol = ?")
+            .all(fromId, toId);
+        return rows.map(rowToRelation);
+    }
+    getAllRelations(projectId, limit = 10000) {
+        const rows = this.db
+            .prepare("SELECT * FROM code_relations WHERE project_id = ? LIMIT ?")
+            .all(projectId, limit);
+        return rows.map(rowToRelation);
+    }
+    // ── FTS5 Search ──────────────────────────────────
+    searchSymbols(query, projectId, limit = 20) {
+        const rows = this.db
+            .prepare(`SELECT cs.*, rank AS score
+         FROM code_symbols_fts fts
+         JOIN code_symbols cs ON cs.rowid = fts.rowid
+         WHERE code_symbols_fts MATCH ? AND cs.project_id = ?
+         ORDER BY rank
+         LIMIT ?`)
+            .all(query, projectId, limit);
+        return rows.map((row) => ({
+            symbol: rowToSymbol(row),
+            score: Math.abs(row.score), // BM25 returns negative scores
+        }));
+    }
+    // ── Index Meta ───────────────────────────────────
+    getIndexMeta(projectId) {
+        const row = this.db
+            .prepare("SELECT * FROM code_index_meta WHERE project_id = ?")
+            .get(projectId);
+        return row ? rowToMeta(row) : null;
+    }
+    upsertIndexMeta(meta) {
+        this.db
+            .prepare(`INSERT INTO code_index_meta (project_id, last_indexed, file_count, symbol_count, relation_count, git_hash)
+         VALUES (?, ?, ?, ?, ?, ?)
+         ON CONFLICT(project_id) DO UPDATE SET
+           last_indexed = excluded.last_indexed,
+           file_count = excluded.file_count,
+           symbol_count = excluded.symbol_count,
+           relation_count = excluded.relation_count,
+           git_hash = excluded.git_hash`)
+            .run(meta.projectId, meta.lastIndexed, meta.fileCount, meta.symbolCount, meta.relationCount, meta.gitHash ?? null);
+    }
+    // ── Stats ────────────────────────────────────────
+    getSymbolCount(projectId) {
+        const row = this.db
+            .prepare("SELECT COUNT(*) as count FROM code_symbols WHERE project_id = ?")
+            .get(projectId);
+        return row.count;
+    }
+    getRelationCount(projectId) {
+        const row = this.db
+            .prepare("SELECT COUNT(*) as count FROM code_relations WHERE project_id = ?")
+            .get(projectId);
+        return row.count;
+    }
+    getModulePaths(projectId) {
+        const rows = this.db
+            .prepare("SELECT DISTINCT module_path FROM code_symbols WHERE project_id = ? AND module_path IS NOT NULL ORDER BY module_path")
+            .all(projectId);
+        return rows.map((r) => r.module_path);
+    }
+}
+//# sourceMappingURL=code-store.js.map

package/dist/core/code/code-store.js.map

@@ -0,0 +1 @@
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package/dist/core/code/code-types.d.ts

@@ -0,0 +1,209 @@
+/**
+ * Zod schemas and types for the native Code Intelligence engine.
+ * Replaces GitNexus types with Zod-validated, SQLite-backed structures.
+ */
+import { z } from "zod/v4";
+export declare const SymbolKindSchema: z.ZodEnum<{
+    function: "function";
+    enum: "enum";
+    class: "class";
+    method: "method";
+    variable: "variable";
+    interface: "interface";
+    type_alias: "type_alias";
+}>;
+export type SymbolKind = z.infer<typeof SymbolKindSchema>;
+export declare const RelationTypeSchema: z.ZodEnum<{
+    implements: "implements";
+    calls: "calls";
+    imports: "imports";
+    extends: "extends";
+    belongs_to: "belongs_to";
+}>;
+export type CodeRelationType = z.infer<typeof RelationTypeSchema>;
+export declare const RiskLevelSchema: z.ZodEnum<{
+    low: "low";
+    medium: "medium";
+    high: "high";
+}>;
+export type RiskLevel = z.infer<typeof RiskLevelSchema>;
+export declare const CodeSymbolSchema: z.ZodObject<{
+    id: z.ZodString;
+    projectId: z.ZodString;
+    name: z.ZodString;
+    kind: z.ZodEnum<{
+        function: "function";
+        enum: "enum";
+        class: "class";
+        method: "method";
+        variable: "variable";
+        interface: "interface";
+        type_alias: "type_alias";
+    }>;
+    file: z.ZodString;
+    startLine: z.ZodInt;
+    endLine: z.ZodInt;
+    exported: z.ZodBoolean;
+    modulePath: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+    signature: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+    metadata: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodUnknown>>;
+    indexedAt: z.ZodString;
+}, z.core.$strip>;
+export type CodeSymbol = z.infer<typeof CodeSymbolSchema>;
+export declare const CodeRelationSchema: z.ZodObject<{
+    id: z.ZodString;
+    projectId: z.ZodString;
+    fromSymbol: z.ZodString;
+    toSymbol: z.ZodString;
+    type: z.ZodEnum<{
+        implements: "implements";
+        calls: "calls";
+        imports: "imports";
+        extends: "extends";
+        belongs_to: "belongs_to";
+    }>;
+    file: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+    line: z.ZodOptional<z.ZodNullable<z.ZodInt>>;
+    metadata: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodUnknown>>;
+    indexedAt: z.ZodString;
+}, z.core.$strip>;
+export type CodeRelation = z.infer<typeof CodeRelationSchema>;
+export declare const CodeGraphDataSchema: z.ZodObject<{
+    symbols: z.ZodArray<z.ZodObject<{
+        id: z.ZodString;
+        projectId: z.ZodString;
+        name: z.ZodString;
+        kind: z.ZodEnum<{
+            function: "function";
+            enum: "enum";
+            class: "class";
+            method: "method";
+            variable: "variable";
+            interface: "interface";
+            type_alias: "type_alias";
+        }>;
+        file: z.ZodString;
+        startLine: z.ZodInt;
+        endLine: z.ZodInt;
+        exported: z.ZodBoolean;
+        modulePath: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        signature: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        metadata: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodUnknown>>;
+        indexedAt: z.ZodString;
+    }, z.core.$strip>>;
+    relations: z.ZodArray<z.ZodObject<{
+        id: z.ZodString;
+        projectId: z.ZodString;
+        fromSymbol: z.ZodString;
+        toSymbol: z.ZodString;
+        type: z.ZodEnum<{
+            implements: "implements";
+            calls: "calls";
+            imports: "imports";
+            extends: "extends";
+            belongs_to: "belongs_to";
+        }>;
+        file: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        line: z.ZodOptional<z.ZodNullable<z.ZodInt>>;
+        metadata: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodUnknown>>;
+        indexedAt: z.ZodString;
+    }, z.core.$strip>>;
+}, z.core.$strip>;
+export type CodeGraphData = z.infer<typeof CodeGraphDataSchema>;
+export declare const AffectedSymbolSchema: z.ZodObject<{
+    name: z.ZodString;
+    file: z.ZodString;
+    confidence: z.ZodNumber;
+    depth: z.ZodOptional<z.ZodInt>;
+}, z.core.$strip>;
+export type AffectedSymbol = z.infer<typeof AffectedSymbolSchema>;
+export declare const ImpactResultSchema: z.ZodObject<{
+    symbol: z.ZodString;
+    affectedSymbols: z.ZodArray<z.ZodObject<{
+        name: z.ZodString;
+        file: z.ZodString;
+        confidence: z.ZodNumber;
+        depth: z.ZodOptional<z.ZodInt>;
+    }, z.core.$strip>>;
+    riskLevel: z.ZodEnum<{
+        low: "low";
+        medium: "medium";
+        high: "high";
+    }>;
+}, z.core.$strip>;
+export type ImpactResult = z.infer<typeof ImpactResultSchema>;
+export declare const CodeIndexMetaSchema: z.ZodObject<{
+    projectId: z.ZodString;
+    lastIndexed: z.ZodString;
+    fileCount: z.ZodInt;
+    symbolCount: z.ZodInt;
+    relationCount: z.ZodInt;
+    gitHash: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+}, z.core.$strip>;
+export type CodeIndexMeta = z.infer<typeof CodeIndexMetaSchema>;
+export declare const CodeSearchResultSchema: z.ZodObject<{
+    symbol: z.ZodObject<{
+        id: z.ZodString;
+        projectId: z.ZodString;
+        name: z.ZodString;
+        kind: z.ZodEnum<{
+            function: "function";
+            enum: "enum";
+            class: "class";
+            method: "method";
+            variable: "variable";
+            interface: "interface";
+            type_alias: "type_alias";
+        }>;
+        file: z.ZodString;
+        startLine: z.ZodInt;
+        endLine: z.ZodInt;
+        exported: z.ZodBoolean;
+        modulePath: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        signature: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+        metadata: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodUnknown>>;
+        indexedAt: z.ZodString;
+    }, z.core.$strip>;
+    score: z.ZodNumber;
+    modulePath: z.ZodOptional<z.ZodNullable<z.ZodString>>;
+}, z.core.$strip>;
+export type CodeSearchResult = z.infer<typeof CodeSearchResultSchema>;
+export interface AnalyzedFile {
+    file: string;
+    symbols: Omit<CodeSymbol, "id" | "projectId" | "indexedAt">[];
+    relations: Omit<CodeRelation, "id" | "projectId" | "indexedAt">[];
+}
+export interface DetectedChange {
+    file: string;
+    changeType: "added" | "modified" | "deleted";
+    affectedSymbols: string[];
+}
+export interface ChangeDetectionResult {
+    changes: DetectedChange[];
+    impactSummary: {
+        totalFiles: number;
+        totalSymbols: number;
+        riskLevel: RiskLevel;
+    };
+}
+export interface DetectedProcess {
+    entryPoint: string;
+    entryFile: string;
+    chain: Array<{
+        name: string;
+        file: string;
+    }>;
+}
+export interface CodeAnalyzer {
+    /** Languages supported by this analyzer (e.g., ["typescript", "javascript"]) */
+    readonly languages: string[];
+    /** Analyze a single file and return symbols + relations */
+    analyzeFile(filePath: string, basePath: string): AnalyzedFile;
+}
+export interface IndexResult {
+    fileCount: number;
+    symbolCount: number;
+    relationCount: number;
+}
+export declare function calculateRiskLevel(affectedCount: number): RiskLevel;
+//# sourceMappingURL=code-types.d.ts.map

package/dist/core/code/code-types.d.ts.map

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package/dist/core/code/code-types.js

@@ -0,0 +1,94 @@
+/**
+ * Zod schemas and types for the native Code Intelligence engine.
+ * Replaces GitNexus types with Zod-validated, SQLite-backed structures.
+ */
+import { z } from "zod/v4";
+// ── Symbol Kinds ──────────────────────────────────────
+export const SymbolKindSchema = z.enum([
+    "function",
+    "class",
+    "method",
+    "interface",
+    "type_alias",
+    "enum",
+    "variable",
+]);
+// ── Relation Types ────────────────────────────────────
+export const RelationTypeSchema = z.enum([
+    "calls",
+    "imports",
+    "extends",
+    "implements",
+    "belongs_to",
+]);
+// ── Risk Levels ───────────────────────────────────────
+export const RiskLevelSchema = z.enum(["low", "medium", "high"]);
+// ── Code Symbol ───────────────────────────────────────
+export const CodeSymbolSchema = z.object({
+    id: z.string(),
+    projectId: z.string(),
+    name: z.string(),
+    kind: SymbolKindSchema,
+    file: z.string(),
+    startLine: z.int().min(1),
+    endLine: z.int().min(1),
+    exported: z.boolean(),
+    modulePath: z.string().nullable().optional(),
+    signature: z.string().nullable().optional(),
+    metadata: z.record(z.string(), z.unknown()).optional(),
+    indexedAt: z.string(),
+});
+// ── Code Relation ─────────────────────────────────────
+export const CodeRelationSchema = z.object({
+    id: z.string(),
+    projectId: z.string(),
+    fromSymbol: z.string(),
+    toSymbol: z.string(),
+    type: RelationTypeSchema,
+    file: z.string().nullable().optional(),
+    line: z.int().nullable().optional(),
+    metadata: z.record(z.string(), z.unknown()).optional(),
+    indexedAt: z.string(),
+});
+// ── Code Graph Data (API response shape) ──────────────
+export const CodeGraphDataSchema = z.object({
+    symbols: z.array(CodeSymbolSchema),
+    relations: z.array(CodeRelationSchema),
+});
+// ── Affected Symbol (impact analysis) ─────────────────
+export const AffectedSymbolSchema = z.object({
+    name: z.string(),
+    file: z.string(),
+    confidence: z.number().min(0).max(1),
+    depth: z.int().min(1).optional(),
+});
+// ── Impact Result ─────────────────────────────────────
+export const ImpactResultSchema = z.object({
+    symbol: z.string(),
+    affectedSymbols: z.array(AffectedSymbolSchema),
+    riskLevel: RiskLevelSchema,
+});
+// ── Index Meta ────────────────────────────────────────
+export const CodeIndexMetaSchema = z.object({
+    projectId: z.string(),
+    lastIndexed: z.string(),
+    fileCount: z.int().min(0),
+    symbolCount: z.int().min(0),
+    relationCount: z.int().min(0),
+    gitHash: z.string().nullable().optional(),
+});
+// ── Search Result ─────────────────────────────────────
+export const CodeSearchResultSchema = z.object({
+    symbol: CodeSymbolSchema,
+    score: z.number(),
+    modulePath: z.string().nullable().optional(),
+});
+// ── Helpers ───────────────────────────────────────────
+export function calculateRiskLevel(affectedCount) {
+    if (affectedCount > 15)
+        return "high";
+    if (affectedCount >= 5)
+        return "medium";
+    return "low";
+}
+//# sourceMappingURL=code-types.js.map

package/dist/core/code/code-types.js.map

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package/dist/core/code/graph-traversal.d.ts

@@ -0,0 +1,27 @@
+/**
+ * Graph traversal algorithms for Code Intelligence.
+ * Operates on CodeStore data: BFS for context/impact, symbol lookup for change detection.
+ */
+import type { CodeStore } from "./code-store.js";
+import type { CodeGraphData, CodeSymbol, CodeRelation, ImpactResult } from "./code-types.js";
+/**
+ * Get 360° context for a symbol: all direct callers, callees, and related symbols.
+ */
+export declare function getSymbolContext(store: CodeStore, name: string, projectId: string): CodeGraphData;
+/**
+ * Analyze blast radius via BFS. Direction controls traversal:
+ * - "upstream": who depends on this symbol (callers, importers)
+ * - "downstream": what this symbol depends on (callees, imported)
+ */
+export declare function analyzeImpact(store: CodeStore, name: string, projectId: string, direction?: "upstream" | "downstream", maxDepth?: number): ImpactResult;
+/**
+ * Get the complete code graph for a project (with optional limit).
+ */
+export declare function getFullGraph(store: CodeStore, projectId: string, symbolLimit?: number): {
+    symbols: CodeSymbol[];
+    relations: Array<CodeRelation & {
+        from: string;
+        to: string;
+    }>;
+};
+//# sourceMappingURL=graph-traversal.d.ts.map

package/dist/core/code/graph-traversal.d.ts.map

@@ -0,0 +1 @@
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