@mcmcjs/julia 0.4.0 → 0.6.0

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../src/environment.ts","../src/doctor.ts","../src/engine.ts","../src/fit.ts","../src/runner-common.ts","../src/predict.ts","../src/project.ts","../src/run-matrix.ts","../src/setup.ts","../src/versions.ts"],"sourcesContent":["import { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport { type CommandRunner, createRunner, type ToolInfo } from \"@mcmcjs/engine\";\n\nexport type { CommandRunner, ToolInfo } from \"@mcmcjs/engine\";\nexport { createRunner } from \"@mcmcjs/engine\";\n\nconst defaultRunner = createRunner();\n\n// juliaup installs its shims here; we also fall back to whatever is on PATH.\nfunction candidates(binary: string): string[] {\n  return [join(homedir(), \".juliaup\", \"bin\", binary), binary];\n}\n\nasync function detect(\n  binary: string,\n  parseVersion: (stdout: string) => string | undefined,\n  runner: CommandRunner,\n): Promise<ToolInfo> {\n  for (const path of candidates(binary)) {\n    try {\n      const version = parseVersion(await runner(path, [\"--version\"]));\n      if (version) return { found: true, version, path };\n    } catch {\n      // not available at this path; try the next candidate\n    }\n  }\n  return { found: false };\n}\n\nconst versionNumber = (stdout: string): string | undefined => stdout.match(/(\\d+\\.\\d+\\.\\d+)/)?.[1];\n\n/** Detects the Julia runtime via `julia --version`. */\nexport function detectJulia(runner: CommandRunner = defaultRunner): Promise<ToolInfo> {\n  return detect(\"julia\", versionNumber, runner);\n}\n\n/** Detects the juliaup version manager via `juliaup --version`. */\nexport function detectJuliaup(runner: CommandRunner = defaultRunner): Promise<ToolInfo> {\n  return detect(\"juliaup\", versionNumber, runner);\n}\n","import { type CommandRunner, detectJulia, detectJuliaup, type ToolInfo } from \"./environment\";\n\n/** A summary of the Julia toolchain available for inference. */\nexport interface DoctorReport {\n  juliaup: ToolInfo;\n  julia: ToolInfo;\n  /** True when Julia itself is available (the minimum needed to run inference). */\n  ready: boolean;\n}\n\n/** Detects the installed Julia toolchain and reports whether inference can run. */\nexport async function runDoctor(runner?: CommandRunner): Promise<DoctorReport> {\n  const [juliaup, julia] = await Promise.all([detectJuliaup(runner), detectJulia(runner)]);\n  return { juliaup, julia, ready: julia.found };\n}\n","import type { Engine, EngineContext, HealthReport } from \"@mcmcjs/engine\";\nimport { runDoctor } from \"./doctor\";\n\nconst JULIAUP_URL = \"https://github.com/JuliaLang/juliaup\";\n\nexport const juliaEngine: Engine = {\n  id: \"julia\",\n  displayName: \"Julia\",\n  capabilities: { setup: true, versions: true, fit: true, predict: true },\n  async doctor(ctx: EngineContext): Promise<HealthReport> {\n    const report = await runDoctor(ctx.run);\n    return {\n      engineId: \"julia\",\n      ready: report.ready,\n      tools: [\n        { name: \"juliaup\", ...report.juliaup },\n        { name: \"julia\", ...report.julia },\n      ],\n      hint: report.ready\n        ? undefined\n        : `Julia not found. Install it with juliaup (${JULIAUP_URL}), or run \\`mcmc setup\\`.`,\n    };\n  },\n};\n","import { existsSync, mkdtempSync, readFileSync, writeFileSync } from \"node:fs\";\nimport { tmpdir } from \"node:os\";\nimport { join } from \"node:path\";\nimport {\n  canonicalJson,\n  parseSamples,\n  type ResolvedSpec,\n  RUN_RECORD_SCHEMA_VERSION,\n  type RunRecord,\n} from \"@mcmcjs/core\";\nimport type { FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { driverPath, lastJsonLine, sha256, toStage } from \"./runner-common\";\n\nexport interface FitIo {\n  /** Spawns the Julia process; injectable so runFit is testable without Julia. */\n  spawn: FitRunner;\n  /** The managed Julia project directory passed as --project. */\n  projectDir: string;\n  /** Where the samples file is written. */\n  outPath: string;\n  tmpDir?: string;\n}\n\n/** Runs one inference for a resolved spec on a resolved runtime invocation. */\nexport async function runFit(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: FitIo,\n): Promise<FitResult> {\n  const startedAt = new Date().toISOString();\n  const start = performance.now();\n  const runtimeRequested = spec.backend.version;\n\n  const tmp = io.tmpDir ?? mkdtempSync(join(tmpdir(), \"mcmcjs-fit-\"));\n  const requestPath = join(tmp, \"request.json\");\n  writeFileSync(\n    requestPath,\n    JSON.stringify({\n      schema_version: spec.schema_version,\n      backend: { id: spec.backend.id },\n      model: { file: spec.modelPath, entry: spec.model.entry },\n      data: spec.data,\n      sampler: spec.sampler,\n      seed: spec.seed,\n      out: io.outPath,\n    }),\n  );\n\n  const args = [\n    ...resolved.args,\n    \"--startup-file=no\",\n    `--project=${io.projectDir}`,\n    driverPath(),\n    requestPath,\n  ];\n  const { stdout, stderr, code } = await io.spawn(resolved.command, args);\n  const elapsedMs = Math.round(performance.now() - start);\n\n  if (code !== 0 || !existsSync(io.outPath)) {\n    const failure = lastJsonLine(stderr);\n    const stage = toStage(failure?.stage);\n    const error =\n      (failure?.error as string) ??\n      stderr.trim().split(\"\\n\").pop() ??\n      `julia exited with code ${code}`;\n    return { status: \"error\", runtimeRequested, elapsedMs, stage, error };\n  }\n\n  try {\n    parseSamples(readFileSync(io.outPath, \"utf8\"));\n  } catch (error) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: `samples file did not parse: ${(error as Error).message}`,\n    };\n  }\n\n  const provenance = lastJsonLine(stdout);\n  const julia = provenance?.julia_version as string | undefined;\n  const record: RunRecord = {\n    schema_version: RUN_RECORD_SCHEMA_VERSION,\n    spec_hash: spec.specHash,\n    seed: spec.seed,\n    backend: { id: spec.backend.id, runtime: spec.backend.runtime },\n    runtime: { requested: runtimeRequested, actual: julia, path: resolved.command },\n    manifest_sha256: provenance?.manifest_sha256 as string | undefined,\n    packages: provenance?.packages as Record<string, string> | undefined,\n    model_sha256: existsSync(spec.modelPath)\n      ? sha256(readFileSync(spec.modelPath, \"utf8\"))\n      : undefined,\n    data_sha256: sha256(canonicalJson(spec.data)),\n    samples_file: io.outPath,\n    started_at: startedAt,\n    elapsed_ms: elapsedMs,\n  };\n  writeFileSync(`${io.outPath}.run.json`, `${JSON.stringify(record, null, 2)}\\n`);\n\n  return {\n    status: \"ok\",\n    samplesFile: io.outPath,\n    runtimeRequested,\n    runtimeActual: julia,\n    elapsedMs,\n  };\n}\n","import { createHash } from \"node:crypto\";\nimport { dirname, join } from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\nimport type { FitResult } from \"@mcmcjs/engine\";\n\n/** Path to the shipped Julia driver, resolved next to this module in dist/. */\nexport function driverPath(): string {\n  return join(dirname(fileURLToPath(import.meta.url)), \"driver.jl\");\n}\n\nexport function sha256(text: string): string {\n  return createHash(\"sha256\").update(text).digest(\"hex\");\n}\n\n/** Parses the last JSON-object line of text (the driver's provenance or error line). */\nexport function lastJsonLine(text: string): Record<string, unknown> | undefined {\n  for (const line of text.trimEnd().split(\"\\n\").reverse()) {\n    const trimmed = line.trim();\n    if (!trimmed.startsWith(\"{\")) continue;\n    try {\n      return JSON.parse(trimmed) as Record<string, unknown>;\n    } catch {\n      return undefined;\n    }\n  }\n  return undefined;\n}\n\nconst STAGES = new Set<NonNullable<FitResult[\"stage\"]>>([\n  \"compile\",\n  \"sample\",\n  \"load_samples\",\n  \"predict\",\n  \"write\",\n  \"spawn\",\n]);\n\n/** Narrows a driver-reported stage string to the known set. */\nexport function toStage(value: unknown): FitResult[\"stage\"] {\n  return typeof value === \"string\" && STAGES.has(value as NonNullable<FitResult[\"stage\"]>)\n    ? (value as FitResult[\"stage\"])\n    : undefined;\n}\n","import { existsSync, mkdtempSync, readFileSync, writeFileSync } from \"node:fs\";\nimport { tmpdir } from \"node:os\";\nimport { join } from \"node:path\";\nimport {\n  canonicalJson,\n  parseSamples,\n  type ResolvedSpec,\n  RUN_RECORD_SCHEMA_VERSION,\n  type RunRecord,\n} from \"@mcmcjs/core\";\nimport type { FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { driverPath, lastJsonLine, sha256, toStage } from \"./runner-common\";\n\nexport interface PredictIo {\n  /** Spawns the Julia process; injectable so runPredict is testable without Julia. */\n  spawn: FitRunner;\n  projectDir: string;\n  /** Where the posterior-predictive samples file is written. */\n  outPath: string;\n  /** The posterior samples file fed to prediction. */\n  samplesPath: string;\n  tmpDir?: string;\n}\n\n/** The prediction data: [data] with [predict].data overrides, target outcomes blanked to nulls. */\nexport function predictData(spec: ResolvedSpec): Record<string, unknown> {\n  const predict = spec.predict;\n  if (!predict) throw new Error(\"spec has no [predict] block\");\n  const data: Record<string, unknown> = { ...spec.data, ...(predict.data ?? {}) };\n  // Blank a target to null, preserving array shape so the driver maps it to a\n  // matching shape of `missing` (a multidimensional outcome stays nested).\n  const blank = (value: unknown): unknown => (Array.isArray(value) ? value.map(blank) : null);\n  for (const target of predict.targets) {\n    data[target] = blank(data[target]);\n  }\n  return data;\n}\n\n/** Draws posterior-predictive samples from a fitted model and its posterior samples file. */\nexport async function runPredict(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: PredictIo,\n): Promise<FitResult> {\n  const startedAt = new Date().toISOString();\n  const start = performance.now();\n  const runtimeRequested = spec.backend.version;\n  const data = predictData(spec);\n\n  const tmp = io.tmpDir ?? mkdtempSync(join(tmpdir(), \"mcmcjs-predict-\"));\n  const requestPath = join(tmp, \"request.json\");\n  writeFileSync(\n    requestPath,\n    JSON.stringify({\n      mode: \"predict\",\n      schema_version: spec.schema_version,\n      backend: { id: spec.backend.id },\n      model: { file: spec.modelPath, entry: spec.model.entry },\n      data,\n      predict: { targets: spec.predict?.targets ?? [] },\n      samples: io.samplesPath,\n      seed: spec.seed,\n      out: io.outPath,\n    }),\n  );\n\n  const args = [\n    ...resolved.args,\n    \"--startup-file=no\",\n    `--project=${io.projectDir}`,\n    driverPath(),\n    requestPath,\n  ];\n  const { stdout, stderr, code } = await io.spawn(resolved.command, args);\n  const elapsedMs = Math.round(performance.now() - start);\n\n  if (code !== 0 || !existsSync(io.outPath)) {\n    const failure = lastJsonLine(stderr);\n    const error =\n      (failure?.error as string) ??\n      stderr.trim().split(\"\\n\").pop() ??\n      `julia exited with code ${code}`;\n    return { status: \"error\", runtimeRequested, elapsedMs, stage: toStage(failure?.stage), error };\n  }\n\n  try {\n    parseSamples(readFileSync(io.outPath, \"utf8\"));\n  } catch (error) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: `samples file did not parse: ${(error as Error).message}`,\n    };\n  }\n\n  const provenance = lastJsonLine(stdout);\n  const julia = provenance?.julia_version as string | undefined;\n  const record: RunRecord = {\n    schema_version: RUN_RECORD_SCHEMA_VERSION,\n    spec_hash: spec.specHash,\n    seed: spec.seed,\n    backend: { id: spec.backend.id, runtime: spec.backend.runtime },\n    runtime: { requested: runtimeRequested, actual: julia, path: resolved.command },\n    manifest_sha256: provenance?.manifest_sha256 as string | undefined,\n    packages: provenance?.packages as Record<string, string> | undefined,\n    model_sha256: existsSync(spec.modelPath)\n      ? sha256(readFileSync(spec.modelPath, \"utf8\"))\n      : undefined,\n    data_sha256: sha256(canonicalJson(data)),\n    posterior_samples: io.samplesPath,\n    posterior_samples_sha256: existsSync(io.samplesPath)\n      ? sha256(readFileSync(io.samplesPath, \"utf8\"))\n      : undefined,\n    samples_file: io.outPath,\n    started_at: startedAt,\n    elapsed_ms: elapsedMs,\n  };\n  writeFileSync(`${io.outPath}.run.json`, `${JSON.stringify(record, null, 2)}\\n`);\n\n  return {\n    status: \"ok\",\n    samplesFile: io.outPath,\n    runtimeRequested,\n    runtimeActual: julia,\n    elapsedMs,\n  };\n}\n","import { existsSync, mkdirSync, readFileSync, writeFileSync } from \"node:fs\";\nimport { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport { type CommandRunner, createRunner } from \"@mcmcjs/engine\";\n\nconst PACKAGES = [\n  \"Turing\",\n  \"FlexiChains\",\n  \"DimensionalData\",\n  \"MCMCChains\",\n  \"JuliaBUGS\",\n  \"AdvancedHMC\",\n  \"ForwardDiff\",\n  \"JSON\",\n  \"StableRNGs\",\n];\n\n/** The per-user directory holding the managed Julia project (Project + Manifest). */\nexport function managedProjectDir(): string {\n  const base = process.env.XDG_DATA_HOME || join(homedir(), \".local\", \"share\");\n  return join(base, \"mcmcjs\", \"julia\", \"env\");\n}\n\n// Records the package set a managed dir was provisioned with, so an env from an\n// older package set is healed (Pkg.add is additive) rather than left incomplete.\nfunction sentinelPath(dir: string): string {\n  return join(dir, \".mcmcjs-packages.json\");\n}\n\nfunction provisioned(dir: string): boolean {\n  try {\n    return readFileSync(sentinelPath(dir), \"utf8\").trim() === JSON.stringify([...PACKAGES].sort());\n  } catch {\n    return false;\n  }\n}\n\n/** Whether the managed project is present and provisioned with the current package set. */\nexport function managedProjectReady(dir: string = managedProjectDir()): boolean {\n  return existsSync(join(dir, \"Project.toml\")) && provisioned(dir);\n}\n\n/**\n * Ensures the managed Julia project exists with the inference packages installed.\n * Idempotent: returns immediately when already provisioned with the current set,\n * otherwise adds (and precompiles) the missing packages. The first run resolves\n * and precompiles the project, which can take several minutes.\n */\nexport async function ensureProject(\n  juliaBin: string,\n  run: CommandRunner = createRunner(30 * 60_000),\n  dir: string = managedProjectDir(),\n): Promise<string> {\n  if (managedProjectReady(dir)) return dir;\n  mkdirSync(dir, { recursive: true });\n  const code = `using Pkg; Pkg.add(${JSON.stringify(PACKAGES)}); Pkg.precompile()`;\n  await run(juliaBin, [\"--startup-file=no\", `--project=${dir}`, \"-e\", code]);\n  writeFileSync(sentinelPath(dir), JSON.stringify([...PACKAGES].sort()));\n  return dir;\n}\n","import { join } from \"node:path\";\nimport type { ResolvedSpec } from \"@mcmcjs/core\";\nimport type { FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { runFit } from \"./fit\";\n\nexport interface MatrixEntry {\n  version: string;\n  status: \"ok\" | \"error\";\n  samplesFile?: string;\n  runtimeActual?: string;\n  elapsedMs: number;\n  stage?: FitResult[\"stage\"];\n  error?: string;\n}\n\nexport interface MatrixResult {\n  entries: MatrixEntry[];\n  /** True only when every requested version ran and succeeded. */\n  ok: boolean;\n}\n\nexport interface MatrixIo {\n  spawn: FitRunner;\n  projectDir: string;\n  /** Directory the per-version samples files are written into. */\n  outDir: string;\n  /** Resolves a version/channel to a concrete invocation; injectable for tests. */\n  resolve: (version: string) => Promise<{ command: string; args: string[] }>;\n  /** Continue after a version fails instead of stopping. */\n  keepGoing?: boolean;\n}\n\n/** Runs the same spec across several Julia versions, one samples file per version. */\nexport async function runMatrix(\n  spec: ResolvedSpec,\n  versions: string[],\n  io: MatrixIo,\n): Promise<MatrixResult> {\n  const entries: MatrixEntry[] = [];\n  for (const version of versions) {\n    let entry: MatrixEntry;\n    try {\n      const resolved = await io.resolve(version);\n      const versioned = { ...spec, backend: { ...spec.backend, version } };\n      const result = await runFit(versioned, resolved, {\n        spawn: io.spawn,\n        projectDir: io.projectDir,\n        outPath: join(io.outDir, `${version}.samples.json`),\n      });\n      entry = {\n        version,\n        status: result.status,\n        samplesFile: result.samplesFile,\n        runtimeActual: result.runtimeActual,\n        elapsedMs: result.elapsedMs,\n        stage: result.stage,\n        error: result.error,\n      };\n    } catch (error) {\n      entry = { version, status: \"error\", elapsedMs: 0, error: (error as Error).message };\n    }\n    entries.push(entry);\n    if (entry.status === \"error\" && !io.keepGoing) break;\n  }\n  return {\n    entries,\n    ok: entries.length === versions.length && entries.every((e) => e.status === \"ok\"),\n  };\n}\n","import { type DoctorReport, runDoctor } from \"./doctor\";\nimport { type CommandRunner, createRunner, type ToolInfo } from \"./environment\";\n\n/** The official juliaup install script, piped to a shell by the install step. */\nconst JULIAUP_INSTALL_URL = \"https://install.julialang.org\";\n\n/** An executable and its arguments, run directly (no shell word-splitting). */\nexport interface InstallCommand {\n  command: string;\n  args: string[];\n}\n\n/**\n * The command that installs juliaup on the given platform, or null when\n * automatic install is not yet supported there.\n */\nexport function juliaupInstallCommand(platform: NodeJS.Platform): InstallCommand | null {\n  if (platform === \"win32\") {\n    // TODO: install juliaup on Windows via winget or the Microsoft Store.\n    return null;\n  }\n  return { command: \"sh\", args: [\"-c\", `curl -fsSL ${JULIAUP_INSTALL_URL} | sh -s -- --yes`] };\n}\n\n/** A single provisioning step needed to make the toolchain ready. */\nexport interface SetupStep {\n  tool: \"juliaup\" | \"julia\";\n  /** A short description of what the step does. */\n  label: string;\n  /** The command to run, or null when the step cannot be performed automatically. */\n  command: InstallCommand | null;\n}\n\n/** The ordered steps needed to reach a ready toolchain, given the current state. */\nexport function planSetup(report: DoctorReport, platform: NodeJS.Platform): SetupStep[] {\n  if (report.julia.found) return [];\n  if (report.juliaup.found) {\n    return [\n      {\n        tool: \"julia\",\n        label: \"install the latest stable Julia via juliaup\",\n        command: { command: report.juliaup.path ?? \"juliaup\", args: [\"add\", \"release\"] },\n      },\n    ];\n  }\n  return [\n    {\n      tool: \"juliaup\",\n      label: \"install juliaup (this also installs Julia)\",\n      command: juliaupInstallCommand(platform),\n    },\n  ];\n}\n\nexport type StepStatus = \"ran\" | \"skipped\" | \"failed\" | \"unsupported\";\n\nexport interface SetupStepResult extends SetupStep {\n  status: StepStatus;\n  /** Error detail when the step failed. */\n  detail?: string;\n}\n\nexport interface SetupResult {\n  juliaup: ToolInfo;\n  julia: ToolInfo;\n  /** True when Julia is available after setup. */\n  ready: boolean;\n  steps: SetupStepResult[];\n}\n\nexport interface SetupOptions {\n  /** Runs detection commands. Injectable for tests. */\n  runner?: CommandRunner;\n  /** Runs install steps, which may take several minutes. Injectable for tests. */\n  installer?: CommandRunner;\n  /** Target platform; defaults to the current process platform. */\n  platform?: NodeJS.Platform;\n  /** Plan the steps but do not run them. */\n  dryRun?: boolean;\n}\n\n/** Installs the Julia toolchain (juliaup and Julia) needed for inference. */\nexport async function runSetup(options: SetupOptions = {}): Promise<SetupResult> {\n  const {\n    runner,\n    installer = createRunner(15 * 60_000),\n    platform = process.platform,\n    dryRun = false,\n  } = options;\n\n  const before = await runDoctor(runner);\n  if (before.ready) return { ...before, steps: [] };\n\n  const plan = planSetup(before, platform);\n\n  if (dryRun) {\n    return {\n      ...before,\n      steps: plan.map((step) => ({ ...step, status: step.command ? \"skipped\" : \"unsupported\" })),\n    };\n  }\n\n  const steps: SetupStepResult[] = [];\n  for (const step of plan) {\n    if (!step.command) {\n      steps.push({ ...step, status: \"unsupported\" });\n      continue;\n    }\n    try {\n      await installer(step.command.command, step.command.args);\n      steps.push({ ...step, status: \"ran\" });\n    } catch (error) {\n      const detail = error instanceof Error ? error.message : String(error);\n      steps.push({ ...step, status: \"failed\", detail });\n    }\n  }\n\n  const after = await runDoctor(runner);\n  return { juliaup: after.juliaup, julia: after.julia, ready: after.ready, steps };\n}\n","import type { CommandRunner, RuntimeVersion } from \"@mcmcjs/engine\";\n\ninterface ChannelInfo {\n  Name: string;\n  File: string;\n  Args?: string[];\n  Version?: string;\n  Arch?: string;\n}\n\ninterface Getconfig1 {\n  DefaultChannel: ChannelInfo | null;\n  OtherChannels: ChannelInfo[];\n}\n\nfunction parseChannel(value: unknown): ChannelInfo {\n  const c = value as Record<string, unknown>;\n  if (!c || typeof c.Name !== \"string\" || typeof c.File !== \"string\") {\n    throw new Error(\"unexpected `juliaup api getconfig1` channel shape\");\n  }\n  return {\n    Name: c.Name,\n    File: c.File,\n    Args: Array.isArray(c.Args) ? (c.Args as string[]) : undefined,\n    Version: typeof c.Version === \"string\" ? c.Version : undefined,\n    Arch: typeof c.Arch === \"string\" ? c.Arch : undefined,\n  };\n}\n\nfunction parseGetconfig1(raw: string): Getconfig1 {\n  let data: unknown;\n  try {\n    data = JSON.parse(raw);\n  } catch {\n    throw new Error(\"could not parse `juliaup api getconfig1` output as JSON\");\n  }\n  const obj = data as Record<string, unknown>;\n  if (!obj || typeof obj !== \"object\" || !Array.isArray(obj.OtherChannels)) {\n    throw new Error(\"unexpected `juliaup api getconfig1` output\");\n  }\n  return {\n    DefaultChannel: obj.DefaultChannel ? parseChannel(obj.DefaultChannel) : null,\n    OtherChannels: obj.OtherChannels.map(parseChannel),\n  };\n}\n\nfunction toVersion(channel: ChannelInfo, isDefault: boolean): RuntimeVersion {\n  return { id: channel.Name, version: channel.Version, path: channel.File || undefined, isDefault };\n}\n\n/** Lists the installed Julia versions, marking the default channel. */\nexport async function listVersions(bin: string, run: CommandRunner): Promise<RuntimeVersion[]> {\n  const config = parseGetconfig1(await run(bin, [\"api\", \"getconfig1\"]));\n  const versions: RuntimeVersion[] = [];\n  if (config.DefaultChannel) versions.push(toVersion(config.DefaultChannel, true));\n  for (const channel of config.OtherChannels) versions.push(toVersion(channel, false));\n  return versions;\n}\n\nexport async function addVersion(\n  bin: string,\n  channel: string,\n  opts: { default?: boolean },\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, [\"add\", channel]);\n  if (opts.default) await run(bin, [\"default\", channel]);\n}\n\nexport async function removeVersion(\n  bin: string,\n  channel: string,\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, [\"remove\", channel]);\n}\n\nexport async function setDefaultVersion(\n  bin: string,\n  channel: string,\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, [\"default\", channel]);\n}\n\nexport async function updateVersion(\n  bin: string,\n  channel: string | undefined,\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, channel ? [\"update\", channel] : [\"update\"]);\n}\n\nexport async function gcVersions(bin: string, run: CommandRunner): Promise<void> {\n  await run(bin, [\"gc\"]);\n}\n\n/** Resolves a channel to a concrete invocation, preferring its absolute binary path. */\nexport async function resolveVersion(\n  bin: string,\n  channel: string,\n  run: CommandRunner,\n): Promise<{ command: string; args: string[] }> {\n  const config = parseGetconfig1(await run(bin, [\"api\", \"getconfig1\"]));\n  const all = config.DefaultChannel\n    ? [config.DefaultChannel, ...config.OtherChannels]\n    : config.OtherChannels;\n  const match = all.find((c) => c.Name === channel);\n  if (!match?.File) {\n    throw new Error(\n      `Julia version \"${channel}\" is not installed. Add it with: mcmc julia version add ${channel}`,\n    );\n  }\n  return { command: match.File, args: match.Args ?? [] };\n}\n\n/** Throws with an actionable message if any requested channel is not installed. */\nexport function assertVersionsInstalled(channels: string[], installed: RuntimeVersion[]): void {\n  const have = new Set(installed.map((v) => v.id));\n  const missing = channels.filter((c) => !have.has(c));\n  if (missing.length > 0) {\n    const fixes = missing.map((m) => `mcmc julia version add ${m}`).join(\"; \");\n    throw new Error(\n      `Julia version(s) not installed: ${missing.join(\", \")}. Install with: ${fixes}`,\n    );\n  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+{"version":3,"sources":["../src/environment.ts","../src/doctor.ts","../src/engine.ts","../src/fit.ts","../src/runner-common.ts","../src/predict.ts","../src/project.ts","../src/run-matrix.ts","../src/setup.ts","../src/versions.ts","../src/worker.ts"],"sourcesContent":["import { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport { type CommandRunner, createRunner, type ToolInfo } from \"@mcmcjs/engine\";\n\nexport type { CommandRunner, ToolInfo } from \"@mcmcjs/engine\";\nexport { createRunner } from \"@mcmcjs/engine\";\n\nconst defaultRunner = createRunner();\n\n// juliaup installs its shims under the home directory; we also fall back to\n// whatever is on PATH. $HOME is honored first so a sandbox that redirects HOME\n// (mcmc sandbox --strict) finds its own juliaup, not the user's.\nfunction candidates(binary: string): string[] {\n  const home = process.env.HOME || homedir();\n  return [join(home, \".juliaup\", \"bin\", binary), binary];\n}\n\nasync function detect(\n  binary: string,\n  parseVersion: (stdout: string) => string | undefined,\n  runner: CommandRunner,\n): Promise<ToolInfo> {\n  for (const path of candidates(binary)) {\n    try {\n      const version = parseVersion(await runner(path, [\"--version\"]));\n      if (version) return { found: true, version, path };\n    } catch {\n      // not available at this path; try the next candidate\n    }\n  }\n  return { found: false };\n}\n\nconst versionNumber = (stdout: string): string | undefined => stdout.match(/(\\d+\\.\\d+\\.\\d+)/)?.[1];\n\n/** Detects the Julia runtime via `julia --version`. */\nexport function detectJulia(runner: CommandRunner = defaultRunner): Promise<ToolInfo> {\n  return detect(\"julia\", versionNumber, runner);\n}\n\n/** Detects the juliaup version manager via `juliaup --version`. */\nexport function detectJuliaup(runner: CommandRunner = defaultRunner): Promise<ToolInfo> {\n  return detect(\"juliaup\", versionNumber, runner);\n}\n","import { type CommandRunner, detectJulia, detectJuliaup, type ToolInfo } from \"./environment\";\n\n/** A summary of the Julia toolchain available for inference. */\nexport interface DoctorReport {\n  juliaup: ToolInfo;\n  julia: ToolInfo;\n  /** True when Julia itself is available (the minimum needed to run inference). */\n  ready: boolean;\n}\n\n/** Detects the installed Julia toolchain and reports whether inference can run. */\nexport async function runDoctor(runner?: CommandRunner): Promise<DoctorReport> {\n  const [juliaup, julia] = await Promise.all([detectJuliaup(runner), detectJulia(runner)]);\n  return { juliaup, julia, ready: julia.found };\n}\n","import type { Engine, EngineContext, HealthReport } from \"@mcmcjs/engine\";\nimport { runDoctor } from \"./doctor\";\n\nconst JULIAUP_URL = \"https://github.com/JuliaLang/juliaup\";\n\nexport const juliaEngine: Engine = {\n  id: \"julia\",\n  displayName: \"Julia\",\n  capabilities: { setup: true, versions: true, fit: true, predict: true },\n  async doctor(ctx: EngineContext): Promise<HealthReport> {\n    const report = await runDoctor(ctx.run);\n    return {\n      engineId: \"julia\",\n      ready: report.ready,\n      tools: [\n        { name: \"juliaup\", ...report.juliaup },\n        { name: \"julia\", ...report.julia },\n      ],\n      hint: report.ready\n        ? undefined\n        : `Julia not found. Install it with juliaup (${JULIAUP_URL}), or run \\`mcmc setup\\`.`,\n    };\n  },\n};\n","import { existsSync, mkdirSync, mkdtempSync, readFileSync, rmSync, writeFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport {\n  canonicalJson,\n  parseSamples,\n  type ResolvedSpec,\n  RUN_RECORD_SCHEMA_VERSION,\n  type RunRecord,\n} from \"@mcmcjs/core\";\nimport type { FitProgress, FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { driverPath, lastJsonLine, sha256, sharedTmpParent, toStage } from \"./runner-common\";\n\nexport interface FitIo {\n  /** Spawns the Julia process; injectable so runFit is testable without Julia. */\n  spawn: FitRunner;\n  /** The managed Julia project directory passed as --project. */\n  projectDir: string;\n  /** Where the samples file is written. */\n  outPath: string;\n  /** Where the run record is written; defaults to `<outPath>.run.json`. */\n  recordPath?: string;\n  /** Streamed per-chain sampling progress. */\n  onProgress?: (progress: FitProgress) => void;\n  /** Source path when the data came from a referenced file; recorded, not copied. */\n  dataFile?: string;\n  /** Overrides the recorded data hash (e.g. the data file's bytes hash). */\n  dataSha256?: string;\n  tmpDir?: string;\n}\n\n/** A fresh request dir under the shared per-user tmp parent. */\nexport function makeRequestDir(kind: string): string {\n  const parent = sharedTmpParent();\n  mkdirSync(parent, { recursive: true });\n  return mkdtempSync(join(parent, `${kind}-`));\n}\n\n/** The driver/worker request object for one fit. */\nexport function fitRequest(spec: ResolvedSpec, outPath: string): Record<string, unknown> {\n  return {\n    schema_version: spec.schema_version,\n    backend: { id: spec.backend.id },\n    model: { file: spec.modelPath, entry: spec.model.entry },\n    data: spec.data,\n    sampler: spec.sampler,\n    seed: spec.seed,\n    out: outPath,\n  };\n}\n\n/**\n * Validates the written samples and records provenance; the success tail\n * shared by the one-shot driver and the worker paths.\n */\nexport function finalizeOkFit(\n  spec: ResolvedSpec,\n  resolved: { command: string },\n  io: Pick<FitIo, \"outPath\" | \"recordPath\" | \"dataFile\" | \"dataSha256\">,\n  provenance: Record<string, unknown> | undefined,\n  startedAt: string,\n  elapsedMs: number,\n): FitResult {\n  const runtimeRequested = spec.backend.version;\n  if (!existsSync(io.outPath)) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: \"the runtime reported success but wrote no samples file\",\n    };\n  }\n  try {\n    parseSamples(readFileSync(io.outPath, \"utf8\"));\n  } catch (error) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: `samples file did not parse: ${(error as Error).message}`,\n    };\n  }\n\n  const julia = provenance?.julia_version as string | undefined;\n  const record: RunRecord = {\n    schema_version: RUN_RECORD_SCHEMA_VERSION,\n    spec_hash: spec.specHash,\n    seed: spec.seed,\n    backend: { id: spec.backend.id, runtime: spec.backend.runtime },\n    runtime: { requested: runtimeRequested, actual: julia, path: resolved.command },\n    manifest_sha256: provenance?.manifest_sha256 as string | undefined,\n    packages: provenance?.packages as Record<string, string> | undefined,\n    model_sha256: existsSync(spec.modelPath)\n      ? sha256(readFileSync(spec.modelPath, \"utf8\"))\n      : undefined,\n    data_sha256: io.dataSha256 ?? sha256(canonicalJson(spec.data)),\n    ...(io.dataFile ? { data_file: io.dataFile } : {}),\n    samples_file: io.outPath,\n    started_at: startedAt,\n    elapsed_ms: elapsedMs,\n  };\n  writeFileSync(io.recordPath ?? `${io.outPath}.run.json`, `${JSON.stringify(record, null, 2)}\\n`);\n\n  return {\n    status: \"ok\",\n    samplesFile: io.outPath,\n    runtimeRequested,\n    runtimeActual: julia,\n    elapsedMs,\n  };\n}\n\n/** Runs one inference for a resolved spec on a resolved runtime invocation. */\nexport async function runFit(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: FitIo,\n): Promise<FitResult> {\n  const startedAt = new Date().toISOString();\n  const start = performance.now();\n  const runtimeRequested = spec.backend.version;\n\n  const ownTmp = io.tmpDir === undefined;\n  const tmp = io.tmpDir ?? makeRequestDir(\"fit\");\n  const requestPath = join(tmp, \"request.json\");\n  writeFileSync(requestPath, JSON.stringify(fitRequest(spec, io.outPath)));\n\n  const args = [\n    ...resolved.args,\n    \"--startup-file=no\",\n    `--project=${io.projectDir}`,\n    driverPath(),\n    requestPath,\n  ];\n  let stdout: string;\n  let stderr: string;\n  let code: number;\n  try {\n    ({ stdout, stderr, code } = await io.spawn(resolved.command, args, {\n      onProgress: io.onProgress,\n    }));\n  } finally {\n    if (ownTmp) rmSync(tmp, { recursive: true, force: true });\n  }\n  const elapsedMs = Math.round(performance.now() - start);\n\n  if (code !== 0 || !existsSync(io.outPath)) {\n    const failure = lastJsonLine(stderr);\n    const stage = toStage(failure?.stage);\n    const error =\n      (failure?.error as string) ??\n      stderr.trim().split(\"\\n\").pop() ??\n      `julia exited with code ${code}`;\n    return { status: \"error\", runtimeRequested, elapsedMs, stage, error };\n  }\n\n  return finalizeOkFit(spec, resolved, io, lastJsonLine(stdout), startedAt, elapsedMs);\n}\n","import { createHash } from \"node:crypto\";\nimport { tmpdir } from \"node:os\";\nimport { dirname, join } from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\nimport type { FitResult } from \"@mcmcjs/engine\";\n\n/**\n * The per-user parent for all mcmcjs temp state. The uid suffix keeps users\n * on a shared /tmp out of each other's way (macOS tmpdir is per-user already,\n * Linux /tmp is not).\n */\nexport function sharedTmpParent(): string {\n  const uid = typeof process.getuid === \"function\" ? `-${process.getuid()}` : \"\";\n  return join(tmpdir(), `mcmcjs${uid}`);\n}\n\n/** Path to the shipped Julia driver, resolved next to this module in dist/. */\nexport function driverPath(): string {\n  return join(dirname(fileURLToPath(import.meta.url)), \"driver.jl\");\n}\n\n/** Path to the shipped persistent worker, resolved next to this module in dist/. */\nexport function workerPath(): string {\n  return join(dirname(fileURLToPath(import.meta.url)), \"worker.jl\");\n}\n\nexport function sha256(text: string): string {\n  return createHash(\"sha256\").update(text).digest(\"hex\");\n}\n\n/** Parses the last JSON-object line of text (the driver's provenance or error line). */\nexport function lastJsonLine(text: string): Record<string, unknown> | undefined {\n  for (const line of text.trimEnd().split(\"\\n\").reverse()) {\n    const trimmed = line.trim();\n    if (!trimmed.startsWith(\"{\")) continue;\n    try {\n      return JSON.parse(trimmed) as Record<string, unknown>;\n    } catch {\n      return undefined;\n    }\n  }\n  return undefined;\n}\n\nconst STAGES = new Set<NonNullable<FitResult[\"stage\"]>>([\n  \"compile\",\n  \"sample\",\n  \"load_samples\",\n  \"predict\",\n  \"write\",\n  \"spawn\",\n  \"worker\",\n]);\n\n/** Narrows a driver-reported stage string to the known set. */\nexport function toStage(value: unknown): FitResult[\"stage\"] {\n  return typeof value === \"string\" && STAGES.has(value as NonNullable<FitResult[\"stage\"]>)\n    ? (value as FitResult[\"stage\"])\n    : undefined;\n}\n","import { existsSync, readFileSync, rmSync, writeFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport {\n  canonicalJson,\n  parseSamples,\n  type ResolvedSpec,\n  RUN_RECORD_SCHEMA_VERSION,\n  type RunRecord,\n} from \"@mcmcjs/core\";\nimport type { FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { makeRequestDir } from \"./fit\";\nimport { driverPath, lastJsonLine, sha256, toStage } from \"./runner-common\";\n\nexport interface PredictIo {\n  /** Spawns the Julia process; injectable so runPredict is testable without Julia. */\n  spawn: FitRunner;\n  projectDir: string;\n  /** Where the posterior-predictive samples file is written. */\n  outPath: string;\n  /** The posterior samples file fed to prediction. */\n  samplesPath: string;\n  tmpDir?: string;\n}\n\n/** The prediction data: [data] with [predict].data overrides, target outcomes blanked to nulls. */\nexport function predictData(spec: ResolvedSpec): Record<string, unknown> {\n  const predict = spec.predict;\n  if (!predict) throw new Error(\"spec has no [predict] block\");\n  const data: Record<string, unknown> = { ...spec.data, ...(predict.data ?? {}) };\n  // Blank a target to null, preserving array shape so the driver maps it to a\n  // matching shape of `missing` (a multidimensional outcome stays nested).\n  const blank = (value: unknown): unknown => (Array.isArray(value) ? value.map(blank) : null);\n  for (const target of predict.targets) {\n    data[target] = blank(data[target]);\n  }\n  return data;\n}\n\n/** Draws posterior-predictive samples from a fitted model and its posterior samples file. */\nexport async function runPredict(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: PredictIo,\n): Promise<FitResult> {\n  const startedAt = new Date().toISOString();\n  const start = performance.now();\n  const runtimeRequested = spec.backend.version;\n  const data = predictData(spec);\n\n  const ownTmp = io.tmpDir === undefined;\n  const tmp = io.tmpDir ?? makeRequestDir(\"predict\");\n  const requestPath = join(tmp, \"request.json\");\n  writeFileSync(\n    requestPath,\n    JSON.stringify({\n      mode: \"predict\",\n      schema_version: spec.schema_version,\n      backend: { id: spec.backend.id },\n      model: { file: spec.modelPath, entry: spec.model.entry },\n      data,\n      predict: { targets: spec.predict?.targets ?? [] },\n      samples: io.samplesPath,\n      seed: spec.seed,\n      out: io.outPath,\n    }),\n  );\n\n  const args = [\n    ...resolved.args,\n    \"--startup-file=no\",\n    `--project=${io.projectDir}`,\n    driverPath(),\n    requestPath,\n  ];\n  let stdout: string;\n  let stderr: string;\n  let code: number;\n  try {\n    ({ stdout, stderr, code } = await io.spawn(resolved.command, args));\n  } finally {\n    if (ownTmp) rmSync(tmp, { recursive: true, force: true });\n  }\n  const elapsedMs = Math.round(performance.now() - start);\n\n  if (code !== 0 || !existsSync(io.outPath)) {\n    const failure = lastJsonLine(stderr);\n    const error =\n      (failure?.error as string) ??\n      stderr.trim().split(\"\\n\").pop() ??\n      `julia exited with code ${code}`;\n    return { status: \"error\", runtimeRequested, elapsedMs, stage: toStage(failure?.stage), error };\n  }\n\n  try {\n    parseSamples(readFileSync(io.outPath, \"utf8\"));\n  } catch (error) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: `samples file did not parse: ${(error as Error).message}`,\n    };\n  }\n\n  const provenance = lastJsonLine(stdout);\n  const julia = provenance?.julia_version as string | undefined;\n  const record: RunRecord = {\n    schema_version: RUN_RECORD_SCHEMA_VERSION,\n    spec_hash: spec.specHash,\n    seed: spec.seed,\n    backend: { id: spec.backend.id, runtime: spec.backend.runtime },\n    runtime: { requested: runtimeRequested, actual: julia, path: resolved.command },\n    manifest_sha256: provenance?.manifest_sha256 as string | undefined,\n    packages: provenance?.packages as Record<string, string> | undefined,\n    model_sha256: existsSync(spec.modelPath)\n      ? sha256(readFileSync(spec.modelPath, \"utf8\"))\n      : undefined,\n    data_sha256: sha256(canonicalJson(data)),\n    posterior_samples: io.samplesPath,\n    posterior_samples_sha256: existsSync(io.samplesPath)\n      ? sha256(readFileSync(io.samplesPath, \"utf8\"))\n      : undefined,\n    samples_file: io.outPath,\n    started_at: startedAt,\n    elapsed_ms: elapsedMs,\n  };\n  writeFileSync(`${io.outPath}.run.json`, `${JSON.stringify(record, null, 2)}\\n`);\n\n  return {\n    status: \"ok\",\n    samplesFile: io.outPath,\n    runtimeRequested,\n    runtimeActual: julia,\n    elapsedMs,\n  };\n}\n","import { existsSync, mkdirSync, readFileSync, writeFileSync } from \"node:fs\";\nimport { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport { canonicalJson } from \"@mcmcjs/core\";\nimport { type CommandRunner, createRunner } from \"@mcmcjs/engine\";\nimport { sha256 } from \"./runner-common\";\n\nconst PACKAGES = [\n  \"Turing\",\n  \"FlexiChains\",\n  \"DimensionalData\",\n  \"MCMCChains\",\n  \"JuliaBUGS\",\n  \"AdvancedHMC\",\n  \"ForwardDiff\",\n  \"JSON\",\n  \"StableRNGs\",\n];\n\n/** Version pins for managed packages, by name (e.g. { Turing: \"0.45\" }). */\nexport type PackagePins = Record<string, string>;\n\n// Version strings are interpolated into Julia source for Pkg.add; this allows\n// only the characters of a Julia version specifier (digits, letters, and the\n// range operators) and notably excludes `$` and backticks, which would\n// otherwise let a shared spec run arbitrary Julia via string interpolation.\nconst VERSION_RE = /^[0-9A-Za-z.+~^=<>,\\s-]+$/;\n\n/** Rejects a version string that could break out of the generated Julia literal. */\nexport function validateVersionString(name: string, version: string): void {\n  if (!VERSION_RE.test(version)) {\n    throw new Error(\n      `invalid version \"${version}\" for package ${name}; a version may contain only digits, letters, and . + ~ ^ = < > , - and spaces`,\n    );\n  }\n}\n\n/** Rejects pins for unmanaged packages or with unsafe version strings. */\nexport function validatePins(pins: PackagePins | undefined): void {\n  for (const [name, version] of Object.entries(pins ?? {})) {\n    if (!PACKAGES.includes(name)) {\n      throw new Error(\n        `cannot pin unknown package \"${name}\"; managed packages are: ${PACKAGES.join(\", \")}`,\n      );\n    }\n    validateVersionString(name, version);\n  }\n}\n\nfunction hasPins(pins?: PackagePins): pins is PackagePins {\n  return pins !== undefined && Object.keys(pins).length > 0;\n}\n\n/**\n * The per-user directory holding a managed Julia project (Project + Manifest).\n * Keyed by the concrete Julia version AND any package pins, so each version\n * resolves its own compatible Manifest and each distinct set of pins gets its\n * own environment: a Manifest resolved by one Julia version (or package set)\n * can pin versions that fail to precompile under another. A missing version\n * and no pins falls back to the unversioned root.\n */\nexport function managedProjectDir(version?: string, pins?: PackagePins): string {\n  const base = process.env.XDG_DATA_HOME || join(homedir(), \".local\", \"share\");\n  const root = join(base, \"mcmcjs\", \"julia\", \"env\");\n  if (!version && !hasPins(pins)) return root;\n  let leaf = (version ?? \"default\").replace(/[^A-Za-z0-9._-]/g, \"_\");\n  if (hasPins(pins)) leaf += `-${sha256(canonicalJson(pins)).slice(0, 8)}`;\n  return join(root, leaf);\n}\n\n// Records what a managed dir was provisioned with (package set + pins), so an\n// env from an older set is healed (Pkg.add is additive) rather than left stale.\nfunction sentinelPath(dir: string): string {\n  return join(dir, \".mcmcjs-packages.json\");\n}\n\nfunction expectedSentinel(pins?: PackagePins): string {\n  return canonicalJson({ packages: [...PACKAGES].sort(), pins: pins ?? {} });\n}\n\nfunction provisioned(dir: string, pins?: PackagePins): boolean {\n  try {\n    return readFileSync(sentinelPath(dir), \"utf8\").trim() === expectedSentinel(pins);\n  } catch {\n    return false;\n  }\n}\n\n/** Whether the managed project is present and provisioned with the current package set and pins. */\nexport function managedProjectReady(\n  dir: string = managedProjectDir(),\n  pins?: PackagePins,\n): boolean {\n  return existsSync(join(dir, \"Project.toml\")) && provisioned(dir, pins);\n}\n\n/** The `Pkg.add` argument: a PackageSpec per managed package, version-pinned where requested. */\nfunction packageSpecsCode(pins?: PackagePins): string {\n  const specs = PACKAGES.map((name) => {\n    const version = pins?.[name];\n    return version\n      ? `Pkg.PackageSpec(name=${JSON.stringify(name)}, version=${JSON.stringify(version)})`\n      : `Pkg.PackageSpec(name=${JSON.stringify(name)})`;\n  });\n  return `[${specs.join(\", \")}]`;\n}\n\n/**\n * Ensures the managed Julia project exists with the inference packages installed\n * (version-pinned where `pins` requests). Idempotent: returns immediately when\n * already provisioned with the current set and pins, otherwise adds (and\n * precompiles) the packages. The first run resolves and precompiles the project,\n * which can take several minutes.\n */\nexport async function ensureProject(\n  juliaBin: string,\n  run: CommandRunner = createRunner(30 * 60_000),\n  dir: string = managedProjectDir(),\n  pins?: PackagePins,\n): Promise<string> {\n  validatePins(pins);\n  if (managedProjectReady(dir, pins)) return dir;\n  mkdirSync(dir, { recursive: true });\n  const code = `using Pkg; Pkg.add(${packageSpecsCode(pins)}); Pkg.precompile()`;\n  await run(juliaBin, [\"--startup-file=no\", `--project=${dir}`, \"-e\", code]);\n  writeFileSync(sentinelPath(dir), expectedSentinel(pins));\n  return dir;\n}\n","import { join } from \"node:path\";\nimport type { ResolvedSpec } from \"@mcmcjs/core\";\nimport type { FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { runFit } from \"./fit\";\n\nexport interface MatrixEntry {\n  version: string;\n  status: \"ok\" | \"error\";\n  samplesFile?: string;\n  runtimeActual?: string;\n  elapsedMs: number;\n  stage?: FitResult[\"stage\"];\n  error?: string;\n}\n\nexport interface MatrixResult {\n  entries: MatrixEntry[];\n  /** True only when every requested version ran and succeeded. */\n  ok: boolean;\n}\n\nexport interface ResolvedInvocation {\n  command: string;\n  args: string[];\n  version?: string;\n}\n\nexport interface MatrixIo {\n  spawn: FitRunner;\n  /** Directory the per-version samples files are written into. */\n  outDir: string;\n  /** Resolves a version/channel to a concrete invocation; injectable for tests. */\n  resolve: (version: string) => Promise<ResolvedInvocation>;\n  /** Provisions the managed env for a resolved version and returns its dir. */\n  ensure: (resolved: ResolvedInvocation) => Promise<string>;\n  /** Source path when the data came from a referenced file; recorded per version. */\n  dataFile?: string;\n  /** Overrides the recorded data hash (the data file's bytes hash). */\n  dataSha256?: string;\n  /** Continue after a version fails instead of stopping. */\n  keepGoing?: boolean;\n}\n\n/** Runs the same spec across several Julia versions, one samples file per version. */\nexport async function runMatrix(\n  spec: ResolvedSpec,\n  versions: string[],\n  io: MatrixIo,\n): Promise<MatrixResult> {\n  const entries: MatrixEntry[] = [];\n  for (const version of versions) {\n    let entry: MatrixEntry;\n    try {\n      const resolved = await io.resolve(version);\n      const projectDir = await io.ensure(resolved);\n      const versioned = { ...spec, backend: { ...spec.backend, version } };\n      const result = await runFit(versioned, resolved, {\n        spawn: io.spawn,\n        projectDir,\n        outPath: join(io.outDir, `${version}.samples.json`),\n        dataFile: io.dataFile,\n        dataSha256: io.dataSha256,\n      });\n      entry = {\n        version,\n        status: result.status,\n        samplesFile: result.samplesFile,\n        runtimeActual: result.runtimeActual,\n        elapsedMs: result.elapsedMs,\n        stage: result.stage,\n        error: result.error,\n      };\n    } catch (error) {\n      entry = { version, status: \"error\", elapsedMs: 0, error: (error as Error).message };\n    }\n    entries.push(entry);\n    if (entry.status === \"error\" && !io.keepGoing) break;\n  }\n  return {\n    entries,\n    ok: entries.length === versions.length && entries.every((e) => e.status === \"ok\"),\n  };\n}\n","import { type DoctorReport, runDoctor } from \"./doctor\";\nimport { type CommandRunner, createRunner, type ToolInfo } from \"./environment\";\n\n/** The official juliaup install script, piped to a shell by the install step. */\nconst JULIAUP_INSTALL_URL = \"https://install.julialang.org\";\n\n/** An executable and its arguments, run directly (no shell word-splitting). */\nexport interface InstallCommand {\n  command: string;\n  args: string[];\n}\n\n/**\n * The command that installs juliaup on the given platform, or null when\n * automatic install is not yet supported there.\n */\nexport function juliaupInstallCommand(platform: NodeJS.Platform): InstallCommand | null {\n  if (platform === \"win32\") {\n    // TODO: install juliaup on Windows via winget or the Microsoft Store.\n    return null;\n  }\n  return { command: \"sh\", args: [\"-c\", `curl -fsSL ${JULIAUP_INSTALL_URL} | sh -s -- --yes`] };\n}\n\n/** A single provisioning step needed to make the toolchain ready. */\nexport interface SetupStep {\n  tool: \"juliaup\" | \"julia\";\n  /** A short description of what the step does. */\n  label: string;\n  /** The command to run, or null when the step cannot be performed automatically. */\n  command: InstallCommand | null;\n}\n\n/** The ordered steps needed to reach a ready toolchain, given the current state. */\nexport function planSetup(report: DoctorReport, platform: NodeJS.Platform): SetupStep[] {\n  if (report.julia.found) return [];\n  if (report.juliaup.found) {\n    return [\n      {\n        tool: \"julia\",\n        label: \"install the latest stable Julia via juliaup\",\n        command: { command: report.juliaup.path ?? \"juliaup\", args: [\"add\", \"release\"] },\n      },\n    ];\n  }\n  return [\n    {\n      tool: \"juliaup\",\n      label: \"install juliaup (this also installs Julia)\",\n      command: juliaupInstallCommand(platform),\n    },\n  ];\n}\n\nexport type StepStatus = \"ran\" | \"skipped\" | \"failed\" | \"unsupported\";\n\nexport interface SetupStepResult extends SetupStep {\n  status: StepStatus;\n  /** Error detail when the step failed. */\n  detail?: string;\n}\n\nexport interface SetupResult {\n  juliaup: ToolInfo;\n  julia: ToolInfo;\n  /** True when Julia is available after setup. */\n  ready: boolean;\n  steps: SetupStepResult[];\n}\n\nexport interface SetupOptions {\n  /** Runs detection commands. Injectable for tests. */\n  runner?: CommandRunner;\n  /** Runs install steps, which may take several minutes. Injectable for tests. */\n  installer?: CommandRunner;\n  /** Target platform; defaults to the current process platform. */\n  platform?: NodeJS.Platform;\n  /** Plan the steps but do not run them. */\n  dryRun?: boolean;\n}\n\n/** Installs the Julia toolchain (juliaup and Julia) needed for inference. */\nexport async function runSetup(options: SetupOptions = {}): Promise<SetupResult> {\n  const {\n    runner,\n    installer = createRunner(15 * 60_000),\n    platform = process.platform,\n    dryRun = false,\n  } = options;\n\n  const before = await runDoctor(runner);\n  if (before.ready) return { ...before, steps: [] };\n\n  const plan = planSetup(before, platform);\n\n  if (dryRun) {\n    return {\n      ...before,\n      steps: plan.map((step) => ({ ...step, status: step.command ? \"skipped\" : \"unsupported\" })),\n    };\n  }\n\n  const steps: SetupStepResult[] = [];\n  for (const step of plan) {\n    if (!step.command) {\n      steps.push({ ...step, status: \"unsupported\" });\n      continue;\n    }\n    try {\n      await installer(step.command.command, step.command.args);\n      steps.push({ ...step, status: \"ran\" });\n    } catch (error) {\n      const detail = error instanceof Error ? error.message : String(error);\n      steps.push({ ...step, status: \"failed\", detail });\n    }\n  }\n\n  const after = await runDoctor(runner);\n  return { juliaup: after.juliaup, julia: after.julia, ready: after.ready, steps };\n}\n","import type { CommandRunner, RuntimeVersion } from \"@mcmcjs/engine\";\n\ninterface ChannelInfo {\n  Name: string;\n  File: string;\n  Args?: string[];\n  Version?: string;\n  Arch?: string;\n}\n\ninterface Getconfig1 {\n  DefaultChannel: ChannelInfo | null;\n  OtherChannels: ChannelInfo[];\n}\n\nfunction parseChannel(value: unknown): ChannelInfo {\n  const c = value as Record<string, unknown>;\n  if (!c || typeof c.Name !== \"string\" || typeof c.File !== \"string\") {\n    throw new Error(\"unexpected `juliaup api getconfig1` channel shape\");\n  }\n  return {\n    Name: c.Name,\n    File: c.File,\n    Args: Array.isArray(c.Args) ? (c.Args as string[]) : undefined,\n    Version: typeof c.Version === \"string\" ? c.Version : undefined,\n    Arch: typeof c.Arch === \"string\" ? c.Arch : undefined,\n  };\n}\n\nfunction parseGetconfig1(raw: string): Getconfig1 {\n  let data: unknown;\n  try {\n    data = JSON.parse(raw);\n  } catch {\n    throw new Error(\"could not parse `juliaup api getconfig1` output as JSON\");\n  }\n  const obj = data as Record<string, unknown>;\n  if (!obj || typeof obj !== \"object\" || !Array.isArray(obj.OtherChannels)) {\n    throw new Error(\"unexpected `juliaup api getconfig1` output\");\n  }\n  return {\n    DefaultChannel: obj.DefaultChannel ? parseChannel(obj.DefaultChannel) : null,\n    OtherChannels: obj.OtherChannels.map(parseChannel),\n  };\n}\n\nfunction toVersion(channel: ChannelInfo, isDefault: boolean): RuntimeVersion {\n  return { id: channel.Name, version: channel.Version, path: channel.File || undefined, isDefault };\n}\n\n/** Lists the installed Julia versions, marking the default channel. */\nexport async function listVersions(bin: string, run: CommandRunner): Promise<RuntimeVersion[]> {\n  const config = parseGetconfig1(await run(bin, [\"api\", \"getconfig1\"]));\n  const versions: RuntimeVersion[] = [];\n  if (config.DefaultChannel) versions.push(toVersion(config.DefaultChannel, true));\n  for (const channel of config.OtherChannels) versions.push(toVersion(channel, false));\n  return versions;\n}\n\nexport async function addVersion(\n  bin: string,\n  channel: string,\n  opts: { default?: boolean },\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, [\"add\", channel]);\n  if (opts.default) await run(bin, [\"default\", channel]);\n}\n\nexport async function removeVersion(\n  bin: string,\n  channel: string,\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, [\"remove\", channel]);\n}\n\nexport async function setDefaultVersion(\n  bin: string,\n  channel: string,\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, [\"default\", channel]);\n}\n\nexport async function updateVersion(\n  bin: string,\n  channel: string | undefined,\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, channel ? [\"update\", channel] : [\"update\"]);\n}\n\nexport async function gcVersions(bin: string, run: CommandRunner): Promise<void> {\n  await run(bin, [\"gc\"]);\n}\n\n/** Resolves a channel to a concrete invocation, preferring its absolute binary path. */\nexport async function resolveVersion(\n  bin: string,\n  channel: string,\n  run: CommandRunner,\n): Promise<{ command: string; args: string[]; version?: string }> {\n  const config = parseGetconfig1(await run(bin, [\"api\", \"getconfig1\"]));\n  const all = config.DefaultChannel\n    ? [config.DefaultChannel, ...config.OtherChannels]\n    : config.OtherChannels;\n  const match = all.find((c) => c.Name === channel);\n  if (!match?.File) {\n    throw new Error(\n      `Julia version \"${channel}\" is not installed. Add it with: mcmc julia version add ${channel}`,\n    );\n  }\n  return { command: match.File, args: match.Args ?? [], version: match.Version };\n}\n\n/** Throws with an actionable message if any requested channel is not installed. */\nexport function assertVersionsInstalled(channels: string[], installed: RuntimeVersion[]): void {\n  const have = new Set(installed.map((v) => v.id));\n  const missing = channels.filter((c) => !have.has(c));\n  if (missing.length > 0) {\n    const fixes = missing.map((m) => `mcmc julia version add ${m}`).join(\"; \");\n    throw new Error(\n      `Julia version(s) not installed: ${missing.join(\", \")}. Install with: ${fixes}`,\n    );\n  }\n}\n","import { spawn } from \"node:child_process\";\nimport { mkdirSync, readdirSync, rmdirSync, rmSync, statSync } from \"node:fs\";\nimport { createConnection, type Socket } from \"node:net\";\nimport { join } from \"node:path\";\nimport type { ResolvedSpec } from \"@mcmcjs/core\";\nimport type { FitResult } from \"@mcmcjs/engine\";\nimport { parseProgressLine } from \"@mcmcjs/engine\";\nimport { type FitIo, finalizeOkFit, fitRequest, runFit } from \"./fit\";\nimport { sha256, sharedTmpParent, toStage, workerPath } from \"./runner-common\";\n\nconst START_WAIT_MS = 180_000;\nconst CONNECT_TIMEOUT_MS = 1_000;\nconst STOP_ACK_TIMEOUT_MS = 3_000;\n\n/** Same 30-minute budget as the one-shot driver; MCMC_WORKER_TIMEOUT_MS overrides. */\nfunction fitInactivityTimeoutMs(): number {\n  const fromEnv = Number(process.env.MCMC_WORKER_TIMEOUT_MS);\n  return Number.isFinite(fromEnv) && fromEnv > 0 ? fromEnv : 30 * 60_000;\n}\n\n/** A hung worker is not retried; the fit is reported failed instead. */\nclass WorkerTimeoutError extends Error {}\n\n/** Where worker sockets live; runtime dir when available, the shared tmp parent otherwise. */\nexport function workersDir(): string {\n  const runtime = process.env.XDG_RUNTIME_DIR;\n  const dir = runtime ? join(runtime, \"mcmcjs\") : join(sharedTmpParent(), \"workers\");\n  mkdirSync(dir, { recursive: true, mode: 0o700 });\n  return dir;\n}\n\n/** One worker per (Julia binary, project env) pair, named by a key hash. */\nexport function workerSocketPath(command: string, projectDir: string): string {\n  return join(workersDir(), `worker-${sha256(`${command}\\n${projectDir}`).slice(0, 12)}.sock`);\n}\n\nfunction connectOnce(path: string): Promise<Socket> {\n  return new Promise((resolve, reject) => {\n    const sock = createConnection(path);\n    const timer = setTimeout(() => {\n      sock.destroy();\n      reject(new Error(\"connect timeout\"));\n    }, CONNECT_TIMEOUT_MS);\n    sock.once(\"connect\", () => {\n      clearTimeout(timer);\n      resolve(sock);\n    });\n    sock.once(\"error\", (error) => {\n      clearTimeout(timer);\n      reject(error);\n    });\n  });\n}\n\nconst delay = (ms: number) => new Promise((resolve) => setTimeout(resolve, ms));\n\n/**\n * Serializes cold starts: only one invocation spawns a worker per socket path;\n * the rest poll the socket. 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Two exceptions never fall\n * back: a fit that genuinely failed (model error) is returned, and a hung\n * worker (timeout) is reported rather than silently re-run for another\n * half hour.\n */\nexport async function runFitAuto(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: FitIo & { daemon?: boolean; notify?: (line: string) => void },\n): Promise<FitResult> {\n  if (io.daemon && process.platform !== \"win32\") {\n    const start = performance.now();\n    try {\n      return await runFitViaWorker(spec, resolved, io);\n    } catch (error) {\n      if (error instanceof WorkerTimeoutError) {\n        return {\n          status: \"error\",\n          runtimeRequested: spec.backend.version,\n          elapsedMs: Math.round(performance.now() - start),\n          stage: \"worker\",\n          error: `${error.message}; the worker may be wedged, try mcmc daemon stop`,\n        };\n      }\n      io.notify?.(\n        `worker unavailable (${(error as Error).message}); falling back to a one-shot run`,\n      );\n    }\n  }\n  return runFit(spec, resolved, io);\n}\n\nexport interface WorkerStatus {\n  socket: string;\n  alive: boolean;\n}\n\n/** Lists known worker sockets and whether each answers. */\nexport async function listWorkers(): Promise<WorkerStatus[]> {\n  const dir = workersDir();\n  const sockets = readdirSync(dir).filter((f) => f.startsWith(\"worker-\") && f.endsWith(\".sock\"));\n  const statuses: WorkerStatus[] = [];\n  for (const name of sockets) {\n    const socket = join(dir, name);\n    let alive = false;\n    try {\n      const sock = await connectOnce(socket);\n      sock.destroy();\n      alive = true;\n    } catch {}\n    statuses.push({ socket, alive });\n  }\n  return statuses;\n}\n\nexport type StopOutcome = \"stopped\" | \"stale\" | \"pending\";\n\n/**\n * Asks one worker to shut down. \"stopped\": acknowledged and gone. \"stale\": the\n * socket was dead and its file was removed. \"pending\": the worker is 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package/dist/worker.jl

@@ -0,0 +1,95 @@
+# MCMC.js persistent fit worker. Keeps Turing loaded between fits so warm
+# re-fits skip the cold start. Listens on a Unix domain socket (ARGS[1]); each
+# connection carries one JSON request line and receives {"mcmcjs":"progress"}
+# lines followed by one final handle_request result line. A {"mcmcjs":"stop"}
+# request shuts the worker down; so does half an hour of idleness.
+include(joinpath(@__DIR__, "fitlib.jl"))
+using Sockets
+
+const IDLE_TIMEOUT_S = 30 * 60
+
+# True while this process still owns the socket path: another worker stealing
+# the path (by binding over it) changes the inode, and a worker that lost the
+# path must never delete its successor's socket.
+function owns_socket(path, ino)
+    try
+        return stat(path).inode == ino
+    catch
+        return false
+    end
+end
+
+function remove_if_owned(path, ino)
+    owns_socket(path, ino) && rm(path; force = true)
+end
+
+function serve(path)
+    mkpath(dirname(path))
+    if ispath(path)
+        # A live worker already serving this path wins; a dead socket file is cleared.
+        try
+            close(Sockets.connect(path))
+            exit(0)
+        catch
+            rm(path; force = true)
+        end
+    end
+    server = Sockets.listen(path)
+    ino = stat(path).inode
+    atexit(() -> remove_if_owned(path, ino))
+
+    last_activity = Ref(time())
+    busy = Ref(false)
+    # The watchdog task is cooperative: it gets scheduled while the main task
+    # blocks on accept. The busy guard is belt and braces for any future
+    # multithreaded scheduling.
+    @async while true
+        sleep(30)
+        if !busy[] && time() - last_activity[] > IDLE_TIMEOUT_S
+            remove_if_owned(path, ino)
+            exit(0)
+        end
+    end
+
+    while true
+        sock = Sockets.accept(server)
+        busy[] = true
+        stopping = false
+        try
+            line = readline(sock)
+            if isempty(strip(line))
+                close(sock)
+                continue
+            end
+            request = JSON.parse(line)
+            if get(request, "mcmcjs", "") == "stop"
+                stopping = true
+                println(sock, JSON.json(Dict("ok" => true, "stopped" => true)))
+            else
+                PROGRESS_IO[] = sock
+                result = try
+                    handle_request(request)
+                finally
+                    PROGRESS_IO[] = stderr
+                end
+                println(sock, JSON.json(result))
+            end
+            close(sock)
+        catch err
+            try
+                println(sock, JSON.json(Dict("ok" => false, "error" => sprint(showerror, err), "stage" => "worker")))
+                close(sock)
+            catch
+            end
+        finally
+            busy[] = false
+            last_activity[] = time()
+        end
+        if stopping
+            remove_if_owned(path, ino)
+            exit(0)
+        end
+    end
+end
+
+serve(ARGS[1])

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mcmcjs/julia",
-  "version": "0.4.0",
+  "version": "0.6.0",
   "description": "Julia toolchain detection and the inference runner for MCMC.js.",
   "keywords": [
     "mcmc",
@@ -46,8 +46,8 @@
     "access": "public"
   },
   "dependencies": {
-    "@mcmcjs/core": "0.2.0",
-    "@mcmcjs/engine": "0.1.0"
+    "@mcmcjs/core": "0.4.0",
+    "@mcmcjs/engine": "0.3.0"
   },
   "scripts": {
     "build": "tsup",