@mcmcjs/julia 0.13.0 → 0.14.0

package/dist/fitlib.jl

@@ -5,6 +5,7 @@
 # chain type (FlexiChains), so a chain-type change is contained here.
 using JSON
 using Logging
+import Distributed
 using Random
 using StableRNGs
 using Turing
@@ -23,6 +24,10 @@ import ReverseDiff
 import FlexiChains
 import DimensionalData
 
+# Workers include this file to mirror the master's definitions (ModelData, the
+# helpers a deserialized model may reference) when sampling MCMCDistributed.
+const FITLIB_FILE = @__FILE__
+
 # AbstractMCMC reports sampling progress through ProgressLogging (reachable via
 # Turing's dependency, no extra package in the managed env).
 const ProgressLogging = Turing.AbstractMCMC.ProgressLogging
@@ -88,6 +93,22 @@ function Logging.handle_message(
     Logging.handle_message(logger.fallback, level, message, _module, group, id, file, line; kwargs...)
 end
 
+# A Turing model file may declare the AD backend it needs by exporting, e.g.,
+# `const MCMC_DEFAULTS = (; adtype = "mooncake")`. A spec or flag adtype wins;
+# the model default fills in only when the request leaves adtype unset.
+function apply_model_defaults(sampler, mod)
+    haskey(sampler, "adtype") && return sampler
+    # Only the gradient samplers take an AD backend.
+    get(sampler, "algorithm", "NUTS") in ("NUTS", "HMC", "HMCDA", "Gibbs", "External") ||
+        return sampler
+    Base.invokelatest(isdefined, mod, :MCMC_DEFAULTS) || return sampler
+    defaults = Base.invokelatest(getfield, mod, :MCMC_DEFAULTS)
+    hasproperty(defaults, :adtype) || return sampler
+    merged = copy(sampler)
+    merged["adtype"] = String(defaults.adtype)
+    return merged
+end
+
 function build_adtype(name)
     name == "forwarddiff" && return Turing.ADTypes.AutoForwardDiff()
     name == "reversediff" && return Turing.ADTypes.AutoReverseDiff()
@@ -95,7 +116,7 @@ function build_adtype(name)
     error("unsupported adtype: $name")
 end
 
-function build_sampler(sampler, backend)
+function build_sampler(sampler, backend, modelmod = nothing)
     algorithm = get(sampler, "algorithm", "NUTS")
     # Prior draws are iid: no warmup, no adaptation. The JuliaBUGS path samples
     # ancestrally (sample_bugs_prior) instead of going through a sampler object.
@@ -106,6 +127,10 @@ function build_sampler(sampler, backend)
         algorithm == "NUTS" || error("the juliabugs backend supports NUTS and Prior only")
         return AdvancedHMC.NUTS(adapt_delta), warmup
     end
+    algorithm == "MH" && return Turing.MH(), warmup
+    algorithm == "ESS" && return Turing.ESS(), warmup
+    algorithm == "SMC" && return Turing.SMC(), warmup
+    algorithm == "PG" && return Turing.PG(Int(sampler["particles"])), warmup
     adkw = haskey(sampler, "adtype") ? (; adtype = build_adtype(sampler["adtype"])) : (;)
     algorithm == "NUTS" && return Turing.NUTS(warmup, adapt_delta; adkw...), warmup
     algorithm == "HMC" &&
@@ -113,10 +138,42 @@ function build_sampler(sampler, backend)
         warmup
     algorithm == "HMCDA" &&
         return Turing.HMCDA(warmup, adapt_delta, Float64(sampler["lambda"]); adkw...), warmup
-    algorithm == "MH" && return Turing.MH(), warmup
+    algorithm == "Gibbs" && return build_gibbs(sampler, adkw, warmup), warmup
+    if algorithm == "External"
+        modelmod === nothing && error("the External algorithm applies to Turing models only")
+        Base.invokelatest(isdefined, modelmod, :MCMC_SAMPLER) ||
+            error("algorithm External needs the model file to define MCMC_SAMPLER")
+        ext = Base.invokelatest(getfield, modelmod, :MCMC_SAMPLER)
+        return Turing.externalsampler(ext; adkw...), warmup
+    end
     error("unsupported sampler algorithm: $algorithm")
 end
 
+# One Gibbs component: the block's variables get the block's sampler. A single
+# variable keys by symbol, several by tuple, matching Turing's constructor.
+function block_sampler(block, adkw, warmup)
+    algorithm = get(block, "algorithm", "NUTS")
+    adapt_delta = Float64(get(block, "adapt_delta", 0.8))
+    algorithm == "MH" && return Turing.MH()
+    algorithm == "ESS" && return Turing.ESS()
+    algorithm == "PG" && return Turing.PG(Int(block["particles"]))
+    algorithm == "NUTS" && return Turing.NUTS(warmup, adapt_delta; adkw...)
+    algorithm == "HMC" &&
+        return Turing.HMC(Float64(block["step_size"]), Int(block["leapfrog_steps"]); adkw...)
+    algorithm == "HMCDA" &&
+        return Turing.HMCDA(warmup, adapt_delta, Float64(block["lambda"]); adkw...)
+    error("unsupported Gibbs block algorithm: $algorithm")
+end
+
+function build_gibbs(sampler, adkw, warmup)
+    pairs = map(sampler["blocks"]) do block
+        vars = Symbol.(block["variables"])
+        key = length(vars) == 1 ? vars[1] : Tuple(vars)
+        key => block_sampler(block, adkw, warmup)
+    end
+    return Turing.Gibbs(pairs...)
+end
+
 # Extra keyword arguments for AbstractMCMC.sample, from the request's sampler
 # table: thinning, burn-in for the non-adaptive samplers (NUTS and HMCDA discard
 # their own adaptation), and named starting values replicated across chains.
@@ -125,7 +182,23 @@ function sampling_kwargs(sampler, warmup, chains)
     thin = Int(get(sampler, "thin", 1))
     thin > 1 && (kw = merge(kw, (; thinning = thin)))
     algorithm = get(sampler, "algorithm", "NUTS")
-    algorithm in ("MH", "HMC") && warmup > 0 && (kw = merge(kw, (; discard_initial = warmup)))
+    if algorithm in ("MH", "HMC", "ESS", "PG", "Gibbs", "External") && warmup > 0
+        kw = merge(kw, (; discard_initial = warmup))
+    end
+    # AdvancedHMC-style external samplers adapt only when told how many steps to
+    # use; without n_adapts a chain can freeze at its initial point.
+    if algorithm == "External" && warmup > 0
+        kw = merge(kw, (; n_adapts = warmup))
+    end
+    # NUTS/HMCDA blocks inside Gibbs adapt only through the sample-level nadapts
+    # keyword (the constructor's count is ignored there); without it the block
+    # never tunes its step size and can freeze.
+    if algorithm == "Gibbs" && warmup > 0
+        blocks = get(sampler, "blocks", Any[])
+        if any(get(b, "algorithm", "NUTS") in ("NUTS", "HMCDA") for b in blocks)
+            kw = merge(kw, (; nadapts = warmup))
+        end
+    end
     if haskey(sampler, "initial_params")
         nt = (; (Symbol(k) => narrow(v) for (k, v) in sampler["initial_params"])...)
         strategy = Turing.DynamicPPL.InitFromParams(nt)
@@ -327,14 +400,35 @@ end
 # the model methods are defined by `include` at runtime, so a plain call from
 # this (older) world would fail with "method too new". invokelatest fixes that.
 # Returns Turing's default chain type, a FlexiChain. With a callback, draws stream.
-function build_and_sample(entry, data, sampler, draws, chains, rng; callback = nothing, extra = (;))
+function build_and_sample(
+    entry, data, sampler, draws, chains, rng; callback = nothing, extra = (;), parallel = "serial"
+)
     model = condition_on_data(entry(data), data)
     kw = callback === nothing ? extra : merge(extra, (; callback))
+    ensemble = parallel == "threads" ? MCMCThreads() :
+        parallel == "distributed" ? MCMCDistributed() : MCMCSerial()
     return Logging.with_logger(JSONProgressLogger()) do
-        sample(rng, model, sampler, MCMCSerial(), draws, chains; progress = true, kw...)
+        sample(rng, model, sampler, ensemble, draws, chains; progress = true, kw...)
     end
 end
 
+# Distributed chains need the model's definitions on every process: workers get
+# this file (ModelData and friends), then all processes include the model file
+# into Main so the serialized model's references resolve identically everywhere.
+function setup_distributed(chains, model_file)
+    missing_workers = chains - Distributed.nworkers()
+    if Distributed.nprocs() == 1 || missing_workers > 0
+        Distributed.addprocs(
+            Distributed.nprocs() == 1 ? chains : missing_workers;
+            exeflags = ["--project=$(Base.active_project())", "--startup-file=no"],
+        )
+        Distributed.remotecall_eval(
+            Main, Distributed.workers(), :(Base.include(Main, $FITLIB_FILE))
+        )
+    end
+    Distributed.remotecall_eval(Main, Distributed.procs(), :(Base.include(Main, $model_file)))
+end
+
 # FlexiChains-native wire writer. DimArray(chn) splits array-valued parameters
 # into scalar leaves (theta -> theta[1], theta[2]) in the (iter, chain, param)
 # orientation; Real-valued extras become the internals section.
@@ -376,12 +470,16 @@ end
 # Returns a FlexiChain like the Turing path; gen_chains recovers generated
 # quantities (unobserved nodes with no observed descendants) after sampling.
 # With a callback, draws stream (see bugs_draw_streamer).
-function sample_bugs(model, sampler, warmup, draws, chains, rng; callback = nothing, thin = 1)
+function sample_bugs(
+    model, sampler, warmup, draws, chains, rng;
+    callback = nothing, thin = 1, threads = false,
+)
     kw = callback === nothing ? (;) : (; callback)
     thin > 1 && (kw = merge(kw, (; thinning = thin)))
+    ensemble = threads ? JuliaBUGS.AbstractMCMC.MCMCThreads() : JuliaBUGS.AbstractMCMC.MCMCSerial()
     return Logging.with_logger(JSONProgressLogger()) do
         JuliaBUGS.AbstractMCMC.sample(
-            rng, model, sampler, JuliaBUGS.AbstractMCMC.MCMCSerial(), draws, chains;
+            rng, model, sampler, ensemble, draws, chains;
             chain_type = FlexiChains.VNChain, n_adapts = warmup, discard_initial = warmup,
             progress = true, kw...,
         )
@@ -712,9 +810,20 @@ function handle_request(request)
             end
         else
             data = backend == "juliabugs" ? bugs_namedtuple(request["data"]) : ModelData(to_namedtuple(request["data"]))
-            sampler, warmup = build_sampler(request["sampler"], backend)
-            draws = Int(request["sampler"]["draws"])
+            parallel = get(request["sampler"], "parallel", "serial")
             chains = Int(get(request["sampler"], "chains", 4))
+            if parallel == "distributed" && backend != "juliabugs"
+                # Every process needs the model's definitions under the same
+                # names; the module-per-request isolation gives way to Main.
+                stage = "distribute"
+                Base.invokelatest(setup_distributed, chains, request["model"]["file"])
+                modelmod = Main
+                entry = resolve_entry(Main, get(request["model"], "entry", nothing))
+            end
+            sampler_conf = backend == "juliabugs" ? request["sampler"] :
+                apply_model_defaults(request["sampler"], modelmod)
+            sampler, warmup = build_sampler(sampler_conf, backend, modelmod)
+            draws = Int(request["sampler"]["draws"])
             stage = "sample"
             if backend == "juliabugs"
                 model = Base.invokelatest(entry, data)
@@ -723,21 +832,24 @@ function handle_request(request)
                 else
                     # Reconstruction reads the plain BUGSModel; entry may return a gradient wrapper.
                     base = hasproperty(model, :base_model) ? model.base_model : model
-                    cb = get(request, "stream_draws", false) ?
+                    threads = get(request["sampler"], "parallel", "serial") == "threads"
+                    cb = get(request, "stream_draws", false) && !threads ?
                         bugs_draw_streamer(base, draws, Int(get(request, "draw_batch_size", 25))) : nothing
                     Base.invokelatest(
                         sample_bugs, model, sampler, warmup, draws, chains, rng;
-                        callback = cb, thin = Int(get(request["sampler"], "thin", 1)),
+                        callback = cb, thin = Int(get(request["sampler"], "thin", 1)), threads,
                     )
                 end
                 vnchain_to_wire(chn)
             else
-                cb = get(request, "stream_draws", false) ?
+                # The draw streamer assumes chains arrive one at a time; with
+                # concurrent chains the caller must not request streaming.
+                cb = get(request, "stream_draws", false) && parallel == "serial" ?
                     draw_streamer(draws, Int(get(request, "draw_batch_size", 25))) : nothing
                 extra = sampling_kwargs(request["sampler"], warmup, chains)
                 chn = Base.invokelatest(
                     build_and_sample, entry, data, sampler, draws, chains, rng;
-                    callback = cb, extra,
+                    callback = cb, extra, parallel,
                 )
                 vnchain_to_wire(chn)
             end

package/dist/index.cjs

@@ -257,6 +257,7 @@ async function runFit(spec, resolved, io) {
   const args = [
     ...resolved.args,
     "--startup-file=no",
+    ...spec.sampler.parallel === "threads" ? ["--threads=auto"] : [],
     `--project=${io.projectDir}`,
     driverPath(),
     requestPath
@@ -1026,7 +1027,7 @@ async function runFitAuto(spec, resolved, io) {
   if (io.signal?.aborted) {
     return { status: "cancelled", runtimeRequested: spec.backend.version, elapsedMs: 0 };
   }
-  if (io.daemon && process.platform !== "win32") {
+  if (io.daemon && process.platform !== "win32" && spec.sampler.parallel !== "distributed") {
     const start = performance.now();
     try {
       return await runFitViaWorker(spec, resolved, io);

package/dist/index.cjs.map

@@ -1 +1 @@
-{"version":3,"sources":["../src/index.ts","../../../node_modules/.pnpm/tsup@8.5.1_@microsoft+api-extractor@7.58.9_@types+node@24.12.4__postcss@8.5.15_typescript@6.0.3/node_modules/tsup/assets/cjs_shims.js","../src/environment.ts","../src/doctor.ts","../src/engine.ts","../src/fit.ts","../src/runner-common.ts","../src/loglik.ts","../src/predict.ts","../src/project.ts","../src/run-matrix.ts","../src/setup.ts","../src/versions.ts","../src/worker.ts"],"sourcesContent":["export type { DoctorReport } from \"./doctor\";\nexport { runDoctor } from \"./doctor\";\nexport { juliaEngine } from \"./engine\";\nexport type { CommandRunner, ToolInfo } from \"./environment\";\nexport { detectJulia, detectJuliaup } from \"./environment\";\nexport type { FitIo } from \"./fit\";\nexport { runFit } from \"./fit\";\nexport { type LogLikIo, runLogLik } from \"./loglik\";\nexport type { PredictIo } from \"./predict\";\nexport { predictData, runPredict } from \"./predict\";\nexport type { PackagePins } from \"./project\";\nexport {\n  ensureProject,\n  managedProjectDir,\n  managedProjectReady,\n  validatePins,\n  validateVersionString,\n} from \"./project\";\nexport type { MatrixEntry, MatrixIo, MatrixResult } from \"./run-matrix\";\nexport { runMatrix } from \"./run-matrix\";\nexport { sharedTmpParent } from \"./runner-common\";\nexport type {\n  InstallCommand,\n  SetupOptions,\n  SetupResult,\n  SetupStep,\n  SetupStepResult,\n  StepStatus,\n} from \"./setup\";\nexport { juliaupInstallCommand, planSetup, runSetup } from \"./setup\";\nexport {\n  addVersion,\n  assertVersionsInstalled,\n  gcVersions,\n  listVersions,\n  removeVersion,\n  resolveVersion,\n  setDefaultVersion,\n  updateVersion,\n} from \"./versions\";\nexport type { WorkerStatus } from \"./worker\";\nexport { killWorker, listWorkers, runFitAuto, stopWorker } from \"./worker\";\n","// Shim globals in cjs bundle\n// There's a weird bug that esbuild will always inject importMetaUrl\n// if we export it as `const importMetaUrl = ... __filename ...`\n// But using a function will not cause this issue\n\nconst getImportMetaUrl = () => \n  typeof document === \"undefined\" \n    ? new URL(`file:${__filename}`).href \n    : (document.currentScript && document.currentScript.tagName.toUpperCase() === 'SCRIPT') \n      ? document.currentScript.src \n      : new URL(\"main.js\", document.baseURI).href;\n\nexport const importMetaUrl = /* @__PURE__ */ getImportMetaUrl()\n","import { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport { type CommandRunner, createRunner, type ToolInfo } from \"@mcmcjs/engine\";\n\nexport type { CommandRunner, ToolInfo } from \"@mcmcjs/engine\";\nexport { createRunner } from \"@mcmcjs/engine\";\n\nconst defaultRunner = createRunner();\n\n// juliaup installs its shims under the home directory; we also fall back to\n// whatever is on PATH. $HOME is honored first so a sandbox that redirects HOME\n// (mcmc sandbox --strict) finds its own juliaup, not the user's.\nfunction candidates(binary: string): string[] {\n  const home = process.env.HOME || homedir();\n  return [join(home, \".juliaup\", \"bin\", binary), binary];\n}\n\nasync function detect(\n  binary: string,\n  parseVersion: (stdout: string) => string | undefined,\n  runner: CommandRunner,\n): Promise<ToolInfo> {\n  for (const path of candidates(binary)) {\n    try {\n      const version = parseVersion(await runner(path, [\"--version\"]));\n      if (version) return { found: true, version, path };\n    } catch {\n      // not available at this path; try the next candidate\n    }\n  }\n  return { found: false };\n}\n\nconst versionNumber = (stdout: string): string | undefined => stdout.match(/(\\d+\\.\\d+\\.\\d+)/)?.[1];\n\n/** Detects the Julia runtime via `julia --version`. */\nexport function detectJulia(runner: CommandRunner = defaultRunner): Promise<ToolInfo> {\n  return detect(\"julia\", versionNumber, runner);\n}\n\n/** Detects the juliaup version manager via `juliaup --version`. */\nexport function detectJuliaup(runner: CommandRunner = defaultRunner): Promise<ToolInfo> {\n  return detect(\"juliaup\", versionNumber, runner);\n}\n","import { type CommandRunner, detectJulia, detectJuliaup, type ToolInfo } from \"./environment\";\n\n/** A summary of the Julia toolchain available for inference. */\nexport interface DoctorReport {\n  juliaup: ToolInfo;\n  julia: ToolInfo;\n  /** True when Julia itself is available (the minimum needed to run inference). */\n  ready: boolean;\n}\n\n/** Detects the installed Julia toolchain and reports whether inference can run. */\nexport async function runDoctor(runner?: CommandRunner): Promise<DoctorReport> {\n  const [juliaup, julia] = await Promise.all([detectJuliaup(runner), detectJulia(runner)]);\n  return { juliaup, julia, ready: julia.found };\n}\n","import type { Engine, EngineContext, HealthReport } from \"@mcmcjs/engine\";\nimport { runDoctor } from \"./doctor\";\n\nconst JULIAUP_URL = \"https://github.com/JuliaLang/juliaup\";\n\nexport const juliaEngine: Engine = {\n  id: \"julia\",\n  displayName: \"Julia\",\n  capabilities: { setup: true, versions: true, fit: true, predict: true },\n  async doctor(ctx: EngineContext): Promise<HealthReport> {\n    const report = await runDoctor(ctx.run);\n    return {\n      engineId: \"julia\",\n      ready: report.ready,\n      tools: [\n        { name: \"juliaup\", ...report.juliaup },\n        { name: \"julia\", ...report.julia },\n      ],\n      hint: report.ready\n        ? undefined\n        : `Julia not found. Install it with juliaup (${JULIAUP_URL}), or run \\`mcmc setup\\`.`,\n    };\n  },\n};\n","import { existsSync, mkdirSync, mkdtempSync, readFileSync, rmSync, writeFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport {\n  canonicalJson,\n  parseSamples,\n  type ResolvedSpec,\n  RUN_RECORD_SCHEMA_VERSION,\n  type RunRecord,\n} from \"@mcmcjs/core\";\nimport type { DrawBatch, FitProgress, FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { driverPath, lastJsonLine, sha256, sharedTmpParent, toStage } from \"./runner-common\";\n\nexport interface FitIo {\n  /** Spawns the Julia process; injectable so runFit is testable without Julia. */\n  spawn: FitRunner;\n  /** The managed Julia project directory passed as --project. */\n  projectDir: string;\n  /** Where the samples file is written. */\n  outPath: string;\n  /** Where the run record is written; defaults to `<outPath>.run.json`. */\n  recordPath?: string;\n  /** Streamed per-chain sampling progress. */\n  onProgress?: (progress: FitProgress) => void;\n  /** Streamed draw batches as sampling proceeds. */\n  onDraws?: (batch: DrawBatch) => void;\n  /** Raw console lines from the sampler as they arrive (structured progress/draws\n   * lines are filtered out), for surfacing solver logs live. */\n  onLog?: (line: string, stream: \"stdout\" | \"stderr\") => void;\n  /** Draws per streamed batch (driver default 25); lower it when models have many leaves. */\n  drawBatchSize?: number;\n  /** Aborts an in-progress fit; the run then ends with a \"cancelled\" status. */\n  signal?: AbortSignal;\n  /** Source path when the data came from a referenced file; recorded, not copied. */\n  dataFile?: string;\n  /** Overrides the recorded data hash (e.g. the data file's bytes hash). */\n  dataSha256?: string;\n  tmpDir?: string;\n}\n\n/** A fresh request dir under the shared per-user tmp parent. */\nexport function makeRequestDir(kind: string): string {\n  const parent = sharedTmpParent();\n  mkdirSync(parent, { recursive: true });\n  return mkdtempSync(join(parent, `${kind}-`));\n}\n\n/** The driver/worker request object for one fit. */\nexport function fitRequest(\n  spec: ResolvedSpec,\n  outPath: string,\n  opts?: { streamDraws?: boolean; drawBatchSize?: number },\n): Record<string, unknown> {\n  return {\n    schema_version: spec.schema_version,\n    backend: { id: spec.backend.id },\n    model: { file: spec.modelPath, entry: spec.model.entry },\n    data: spec.data,\n    sampler: spec.sampler,\n    seed: spec.seed,\n    out: outPath,\n    ...(opts?.streamDraws ? { stream_draws: true } : {}),\n    ...(opts?.drawBatchSize ? { draw_batch_size: opts.drawBatchSize } : {}),\n  };\n}\n\n/**\n * Validates the written samples and records provenance; the success tail\n * shared by the one-shot driver and the worker paths.\n */\nexport function finalizeOkFit(\n  spec: ResolvedSpec,\n  resolved: { command: string },\n  io: Pick<FitIo, \"outPath\" | \"recordPath\" | \"dataFile\" | \"dataSha256\">,\n  provenance: Record<string, unknown> | undefined,\n  startedAt: string,\n  elapsedMs: number,\n): FitResult {\n  const runtimeRequested = spec.backend.version;\n  if (!existsSync(io.outPath)) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: \"the runtime reported success but wrote no samples file\",\n    };\n  }\n  try {\n    parseSamples(readFileSync(io.outPath, \"utf8\"));\n  } catch (error) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: `samples file did not parse: ${(error as Error).message}`,\n    };\n  }\n\n  const julia = provenance?.julia_version as string | undefined;\n  const record: RunRecord = {\n    schema_version: RUN_RECORD_SCHEMA_VERSION,\n    spec_hash: spec.specHash,\n    seed: spec.seed,\n    backend: { id: spec.backend.id, runtime: spec.backend.runtime },\n    runtime: { requested: runtimeRequested, actual: julia, path: resolved.command },\n    manifest_sha256: provenance?.manifest_sha256 as string | undefined,\n    packages: provenance?.packages as Record<string, string> | undefined,\n    model_sha256: existsSync(spec.modelPath)\n      ? sha256(readFileSync(spec.modelPath, \"utf8\"))\n      : undefined,\n    data_sha256: io.dataSha256 ?? sha256(canonicalJson(spec.data)),\n    ...(io.dataFile ? { data_file: io.dataFile } : {}),\n    samples_file: io.outPath,\n    started_at: startedAt,\n    elapsed_ms: elapsedMs,\n  };\n  writeFileSync(io.recordPath ?? `${io.outPath}.run.json`, `${JSON.stringify(record, null, 2)}\\n`);\n\n  return {\n    status: \"ok\",\n    samplesFile: io.outPath,\n    runtimeRequested,\n    runtimeActual: julia,\n    elapsedMs,\n  };\n}\n\n/** Runs one inference for a resolved spec on a resolved runtime invocation. */\nexport async function runFit(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: FitIo,\n): Promise<FitResult> {\n  const startedAt = new Date().toISOString();\n  const start = performance.now();\n  const runtimeRequested = spec.backend.version;\n\n  if (io.signal?.aborted) {\n    return { status: \"cancelled\", runtimeRequested, elapsedMs: 0 };\n  }\n\n  const ownTmp = io.tmpDir === undefined;\n  const tmp = io.tmpDir ?? makeRequestDir(\"fit\");\n  const requestPath = join(tmp, \"request.json\");\n  writeFileSync(\n    requestPath,\n    JSON.stringify(\n      fitRequest(spec, io.outPath, {\n        streamDraws: io.onDraws !== undefined,\n        drawBatchSize: io.drawBatchSize,\n      }),\n    ),\n  );\n\n  const args = [\n    ...resolved.args,\n    \"--startup-file=no\",\n    `--project=${io.projectDir}`,\n    driverPath(),\n    requestPath,\n  ];\n  let stdout: string;\n  let stderr: string;\n  let code: number;\n  let cancelled: boolean | undefined;\n  try {\n    ({ stdout, stderr, code, cancelled } = await io.spawn(resolved.command, args, {\n      onProgress: io.onProgress,\n      onDraws: io.onDraws,\n      onLog: io.onLog,\n      signal: io.signal,\n    }));\n  } finally {\n    if (ownTmp) rmSync(tmp, { recursive: true, force: true });\n  }\n  const elapsedMs = Math.round(performance.now() - start);\n\n  if (cancelled) {\n    return { status: \"cancelled\", runtimeRequested, elapsedMs };\n  }\n\n  if (code !== 0 || !existsSync(io.outPath)) {\n    const failure = lastJsonLine(stderr);\n    const stage = toStage(failure?.stage);\n    const error =\n      (failure?.error as string) ??\n      stderr.trim().split(\"\\n\").pop() ??\n      `julia exited with code ${code}`;\n    return { status: \"error\", runtimeRequested, elapsedMs, stage, error };\n  }\n\n  return finalizeOkFit(spec, resolved, io, lastJsonLine(stdout), startedAt, elapsedMs);\n}\n","import { createHash } from \"node:crypto\";\nimport { existsSync } from \"node:fs\";\nimport { tmpdir } from \"node:os\";\nimport { dirname, join } from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\nimport type { FitResult } from \"@mcmcjs/engine\";\n\n/**\n * The per-user parent for all mcmcjs temp state. The uid suffix keeps users\n * on a shared /tmp out of each other's way (macOS tmpdir is per-user already,\n * Linux /tmp is not).\n */\nexport function sharedTmpParent(): string {\n  const uid = typeof process.getuid === \"function\" ? `-${process.getuid()}` : \"\";\n  return join(tmpdir(), `mcmcjs${uid}`);\n}\n\n// The driver scripts sit next to the bundle in the published dist/ (tsup copies\n// them there), but under src/driver/ when running from source (tests, tsx). Try\n// the bundle layout first, fall back to the source layout.\nfunction driverFile(name: string): string {\n  const here = dirname(fileURLToPath(import.meta.url));\n  const beside = join(here, name);\n  return existsSync(beside) ? beside : join(here, \"driver\", name);\n}\n\n/** Path to the shipped Julia driver. */\nexport function driverPath(): string {\n  return driverFile(\"driver.jl\");\n}\n\n/** Path to the shipped persistent worker. */\nexport function workerPath(): string {\n  return driverFile(\"worker.jl\");\n}\n\n/**\n * Directory holding the shipped, resolved Julia env (Project.toml + Manifest.toml),\n * next to this module in dist/. A fresh default provision instantiates this exact\n * package set rather than re-resolving the latest compatible versions.\n */\nexport function pinnedEnvDir(): string {\n  return join(dirname(fileURLToPath(import.meta.url)), \"julia-env\");\n}\n\nexport function sha256(text: string): string {\n  return createHash(\"sha256\").update(text).digest(\"hex\");\n}\n\n/** Parses the last JSON-object line of text (the driver's provenance or error line). */\nexport function lastJsonLine(text: string): Record<string, unknown> | undefined {\n  for (const line of text.trimEnd().split(\"\\n\").reverse()) {\n    const trimmed = line.trim();\n    if (!trimmed.startsWith(\"{\")) continue;\n    try {\n      return JSON.parse(trimmed) as Record<string, unknown>;\n    } catch {\n      return undefined;\n    }\n  }\n  return undefined;\n}\n\nconst STAGES = new Set<NonNullable<FitResult[\"stage\"]>>([\n  \"compile\",\n  \"sample\",\n  \"load_samples\",\n  \"predict\",\n  \"write\",\n  \"spawn\",\n  \"worker\",\n]);\n\n/** Narrows a driver-reported stage string to the known set. */\nexport function toStage(value: unknown): FitResult[\"stage\"] {\n  return typeof value === \"string\" && STAGES.has(value as NonNullable<FitResult[\"stage\"]>)\n    ? (value as FitResult[\"stage\"])\n    : undefined;\n}\n","import { existsSync, readFileSync, rmSync, writeFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport {\n  canonicalJson,\n  parseSamples,\n  type ResolvedSpec,\n  RUN_RECORD_SCHEMA_VERSION,\n  type RunRecord,\n} from \"@mcmcjs/core\";\nimport type { FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { makeRequestDir } from \"./fit\";\nimport { driverPath, lastJsonLine, sha256, toStage } from \"./runner-common\";\n\nexport interface LogLikIo {\n  /** Spawns the Julia process; injectable so runLogLik is testable without Julia. */\n  spawn: FitRunner;\n  projectDir: string;\n  /** Where the pointwise log-likelihood file is written (samples wire, one column per observation). */\n  outPath: string;\n  /** The posterior samples file the log-likelihood is evaluated at. */\n  samplesPath: string;\n  tmpDir?: string;\n}\n\n/**\n * Computes the pointwise log-likelihood of the observed data at each posterior\n * draw: one column per observation, in the same wire format as a samples file.\n * This is the input LOO/WAIC model comparison needs.\n */\nexport async function runLogLik(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: LogLikIo,\n): Promise<FitResult> {\n  const startedAt = new Date().toISOString();\n  const start = performance.now();\n  const runtimeRequested = spec.backend.version;\n\n  const ownTmp = io.tmpDir === undefined;\n  const tmp = io.tmpDir ?? makeRequestDir(\"loglik\");\n  const requestPath = join(tmp, \"request.json\");\n  writeFileSync(\n    requestPath,\n    JSON.stringify({\n      mode: \"loglik\",\n      schema_version: spec.schema_version,\n      backend: { id: spec.backend.id },\n      model: { file: spec.modelPath, entry: spec.model.entry },\n      data: spec.data,\n      samples: io.samplesPath,\n      seed: spec.seed,\n      out: io.outPath,\n    }),\n  );\n\n  const args = [\n    ...resolved.args,\n    \"--startup-file=no\",\n    `--project=${io.projectDir}`,\n    driverPath(),\n    requestPath,\n  ];\n  let stdout: string;\n  let stderr: string;\n  let code: number;\n  try {\n    ({ stdout, stderr, code } = await io.spawn(resolved.command, args));\n  } finally {\n    if (ownTmp) rmSync(tmp, { recursive: true, force: true });\n  }\n  const elapsedMs = Math.round(performance.now() - start);\n\n  if (code !== 0 || !existsSync(io.outPath)) {\n    const failure = lastJsonLine(stderr);\n    const error =\n      (failure?.error as string) ??\n      stderr.trim().split(\"\\n\").pop() ??\n      `julia exited with code ${code}`;\n    return { status: \"error\", runtimeRequested, elapsedMs, stage: toStage(failure?.stage), error };\n  }\n\n  try {\n    parseSamples(readFileSync(io.outPath, \"utf8\"));\n  } catch (error) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: `log-likelihood file did not parse: ${(error as Error).message}`,\n    };\n  }\n\n  const provenance = lastJsonLine(stdout);\n  const julia = provenance?.julia_version as string | undefined;\n  const record: RunRecord = {\n    schema_version: RUN_RECORD_SCHEMA_VERSION,\n    spec_hash: spec.specHash,\n    seed: spec.seed,\n    backend: { id: spec.backend.id, runtime: spec.backend.runtime },\n    runtime: { requested: runtimeRequested, actual: julia, path: resolved.command },\n    manifest_sha256: provenance?.manifest_sha256 as string | undefined,\n    packages: provenance?.packages as Record<string, string> | undefined,\n    model_sha256: existsSync(spec.modelPath)\n      ? sha256(readFileSync(spec.modelPath, \"utf8\"))\n      : undefined,\n    data_sha256: sha256(canonicalJson(spec.data)),\n    posterior_samples: io.samplesPath,\n    posterior_samples_sha256: existsSync(io.samplesPath)\n      ? sha256(readFileSync(io.samplesPath, \"utf8\"))\n      : undefined,\n    samples_file: io.outPath,\n    started_at: startedAt,\n    elapsed_ms: elapsedMs,\n  };\n  writeFileSync(`${io.outPath}.run.json`, `${JSON.stringify(record, null, 2)}\\n`);\n\n  return {\n    status: \"ok\",\n    samplesFile: io.outPath,\n    runtimeRequested,\n    runtimeActual: julia,\n    elapsedMs,\n  };\n}\n","import { existsSync, readFileSync, rmSync, writeFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport {\n  canonicalJson,\n  parseSamples,\n  type ResolvedSpec,\n  RUN_RECORD_SCHEMA_VERSION,\n  type RunRecord,\n} from \"@mcmcjs/core\";\nimport type { FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { makeRequestDir } from \"./fit\";\nimport { driverPath, lastJsonLine, sha256, toStage } from \"./runner-common\";\n\nexport interface PredictIo {\n  /** Spawns the Julia process; injectable so runPredict is testable without Julia. */\n  spawn: FitRunner;\n  projectDir: string;\n  /** Where the posterior-predictive samples file is written. */\n  outPath: string;\n  /** The posterior samples file fed to prediction. */\n  samplesPath: string;\n  tmpDir?: string;\n}\n\n/** The prediction data: [data] with [predict].data overrides, target outcomes blanked to nulls. */\nexport function predictData(spec: ResolvedSpec): Record<string, unknown> {\n  const predict = spec.predict;\n  if (!predict) throw new Error(\"spec has no [predict] block\");\n  const data: Record<string, unknown> = { ...spec.data, ...(predict.data ?? {}) };\n  // Blank a target to null, preserving array shape so the driver maps it to a\n  // matching shape of `missing` (a multidimensional outcome stays nested).\n  const blank = (value: unknown): unknown => (Array.isArray(value) ? value.map(blank) : null);\n  for (const target of predict.targets) {\n    data[target] = blank(data[target]);\n  }\n  return data;\n}\n\n/** Draws posterior-predictive samples from a fitted model and its posterior samples file. */\nexport async function runPredict(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: PredictIo,\n): Promise<FitResult> {\n  const startedAt = new Date().toISOString();\n  const start = performance.now();\n  const runtimeRequested = spec.backend.version;\n  const data = predictData(spec);\n\n  const ownTmp = io.tmpDir === undefined;\n  const tmp = io.tmpDir ?? makeRequestDir(\"predict\");\n  const requestPath = join(tmp, \"request.json\");\n  writeFileSync(\n    requestPath,\n    JSON.stringify({\n      mode: \"predict\",\n      schema_version: spec.schema_version,\n      backend: { id: spec.backend.id },\n      model: { file: spec.modelPath, entry: spec.model.entry },\n      data,\n      predict: { targets: spec.predict?.targets ?? [] },\n      samples: io.samplesPath,\n      seed: spec.seed,\n      out: io.outPath,\n    }),\n  );\n\n  const args = [\n    ...resolved.args,\n    \"--startup-file=no\",\n    `--project=${io.projectDir}`,\n    driverPath(),\n    requestPath,\n  ];\n  let stdout: string;\n  let stderr: string;\n  let code: number;\n  try {\n    ({ stdout, stderr, code } = await io.spawn(resolved.command, args));\n  } finally {\n    if (ownTmp) rmSync(tmp, { recursive: true, force: true });\n  }\n  const elapsedMs = Math.round(performance.now() - start);\n\n  if (code !== 0 || !existsSync(io.outPath)) {\n    const failure = lastJsonLine(stderr);\n    const error =\n      (failure?.error as string) ??\n      stderr.trim().split(\"\\n\").pop() ??\n      `julia exited with code ${code}`;\n    return { status: \"error\", runtimeRequested, elapsedMs, stage: toStage(failure?.stage), error };\n  }\n\n  try {\n    parseSamples(readFileSync(io.outPath, \"utf8\"));\n  } catch (error) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: `samples file did not parse: ${(error as Error).message}`,\n    };\n  }\n\n  const provenance = lastJsonLine(stdout);\n  const julia = provenance?.julia_version as string | undefined;\n  const record: RunRecord = {\n    schema_version: RUN_RECORD_SCHEMA_VERSION,\n    spec_hash: spec.specHash,\n    seed: spec.seed,\n    backend: { id: spec.backend.id, runtime: spec.backend.runtime },\n    runtime: { requested: runtimeRequested, actual: julia, path: resolved.command },\n    manifest_sha256: provenance?.manifest_sha256 as string | undefined,\n    packages: provenance?.packages as Record<string, string> | undefined,\n    model_sha256: existsSync(spec.modelPath)\n      ? sha256(readFileSync(spec.modelPath, \"utf8\"))\n      : undefined,\n    data_sha256: sha256(canonicalJson(data)),\n    posterior_samples: io.samplesPath,\n    posterior_samples_sha256: existsSync(io.samplesPath)\n      ? sha256(readFileSync(io.samplesPath, \"utf8\"))\n      : undefined,\n    samples_file: io.outPath,\n    started_at: startedAt,\n    elapsed_ms: elapsedMs,\n  };\n  writeFileSync(`${io.outPath}.run.json`, `${JSON.stringify(record, null, 2)}\\n`);\n\n  return {\n    status: \"ok\",\n    samplesFile: io.outPath,\n    runtimeRequested,\n    runtimeActual: julia,\n    elapsedMs,\n  };\n}\n","import { copyFileSync, existsSync, mkdirSync, readFileSync, writeFileSync } from \"node:fs\";\nimport { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport { canonicalJson, DEFAULT_JULIA_CHANNEL } from \"@mcmcjs/core\";\nimport { type CommandRunner, createRunner } from \"@mcmcjs/engine\";\nimport { pinnedEnvDir, sha256 } from \"./runner-common\";\n\nconst PACKAGES = [\n  \"Turing\",\n  \"FlexiChains\",\n  \"DimensionalData\",\n  \"MCMCChains\",\n  \"JuliaBUGS\",\n  \"AdvancedHMC\",\n  \"ForwardDiff\",\n  \"Mooncake\",\n  \"ReverseDiff\",\n  \"JSON\",\n  \"StableRNGs\",\n  \"StatsFuns\",\n];\n\n/** Version pins for managed packages, by name (e.g. { Turing: \"0.45\" }). */\nexport type PackagePins = Record<string, string>;\n\n// Version strings are interpolated into Julia source for Pkg.add; this allows\n// only the characters of a Julia version specifier (digits, letters, and the\n// range operators) and notably excludes `$` and backticks, which would\n// otherwise let a shared spec run arbitrary Julia via string interpolation.\nconst VERSION_RE = /^[0-9A-Za-z.+~^=<>,\\s-]+$/;\n\n/** Rejects a version string that could break out of the generated Julia literal. */\nexport function validateVersionString(name: string, version: string): void {\n  if (!VERSION_RE.test(version)) {\n    throw new Error(\n      `invalid version \"${version}\" for package ${name}; a version may contain only digits, letters, and . + ~ ^ = < > , - and spaces`,\n    );\n  }\n}\n\n/** Rejects pins for unmanaged packages or with unsafe version strings. */\nexport function validatePins(pins: PackagePins | undefined): void {\n  for (const [name, version] of Object.entries(pins ?? {})) {\n    if (!PACKAGES.includes(name)) {\n      throw new Error(\n        `cannot pin unknown package \"${name}\"; managed packages are: ${PACKAGES.join(\", \")}`,\n      );\n    }\n    validateVersionString(name, version);\n  }\n}\n\nfunction hasPins(pins?: PackagePins): pins is PackagePins {\n  return pins !== undefined && Object.keys(pins).length > 0;\n}\n\n/**\n * The per-user directory holding a managed Julia project (Project + Manifest).\n * Keyed by the concrete Julia version AND any package pins, so each version\n * resolves its own compatible Manifest and each distinct set of pins gets its\n * own environment: a Manifest resolved by one Julia version (or package set)\n * can pin versions that fail to precompile under another. A missing version\n * and no pins falls back to the unversioned root.\n */\nexport function managedProjectDir(version?: string, pins?: PackagePins): string {\n  const base = process.env.XDG_DATA_HOME || join(homedir(), \".local\", \"share\");\n  const root = join(base, \"mcmcjs\", \"julia\", \"env\");\n  if (!version && !hasPins(pins)) return root;\n  let leaf = (version ?? \"default\").replace(/[^A-Za-z0-9._-]/g, \"_\");\n  if (hasPins(pins)) leaf += `-${sha256(canonicalJson(pins)).slice(0, 8)}`;\n  return join(root, leaf);\n}\n\n// Records what a managed dir was provisioned with (package set + pins), so an\n// env from an older set is healed (Pkg.add is additive) rather than left stale.\nfunction sentinelPath(dir: string): string {\n  return join(dir, \".mcmcjs-packages.json\");\n}\n\n// Bumped when the provisioning changes shape so existing envs re-provision; e.g.\n// generation 1 introduced instantiating the committed Manifest for the default,\n// which a pre-existing fresh-resolved env must pick up.\nconst PROVISION_GENERATION = 1;\n\nfunction expectedSentinel(pins?: PackagePins): string {\n  return canonicalJson({\n    gen: PROVISION_GENERATION,\n    packages: [...PACKAGES].sort(),\n    pins: pins ?? {},\n  });\n}\n\nfunction provisioned(dir: string, pins?: PackagePins): boolean {\n  try {\n    return readFileSync(sentinelPath(dir), \"utf8\").trim() === expectedSentinel(pins);\n  } catch {\n    return false;\n  }\n}\n\n/** Whether the managed project is present and provisioned with the current package set and pins. */\nexport function managedProjectReady(\n  dir: string = managedProjectDir(),\n  pins?: PackagePins,\n): boolean {\n  return existsSync(join(dir, \"Project.toml\")) && provisioned(dir, pins);\n}\n\n/** The `Pkg.add` argument: a PackageSpec per managed package, version-pinned where requested. */\nfunction packageSpecsCode(pins?: PackagePins): string {\n  const specs = PACKAGES.map((name) => {\n    const version = pins?.[name];\n    return version\n      ? `Pkg.PackageSpec(name=${JSON.stringify(name)}, version=${JSON.stringify(version)})`\n      : `Pkg.PackageSpec(name=${JSON.stringify(name)})`;\n  });\n  return `[${specs.join(\", \")}]`;\n}\n\n/**\n * Whether a provision should instantiate the shipped, resolved env (exact\n * committed package set) rather than resolving fresh: only the unpinned default\n * on the pinned Julia version, and only when the shipped env is present. Other\n * versions (a `--versions` matrix) and any package pins must resolve fresh,\n * since the committed Manifest was resolved for one specific Julia version.\n */\nfunction usesPinnedEnv(version: string | undefined, pins?: PackagePins): boolean {\n  return !hasPins(pins) && version === DEFAULT_JULIA_CHANNEL && existsSync(pinnedEnvDir());\n}\n\n/**\n * Ensures the managed Julia project exists with the inference packages installed\n * (version-pinned where `pins` requests). Idempotent: returns immediately when\n * already provisioned with the current set and pins. For the default env on the\n * pinned Julia version it instantiates the shipped, resolved Manifest (the exact\n * committed package set); otherwise it resolves and adds the packages fresh. The\n * first provision precompiles the project, which can take several minutes.\n */\nexport async function ensureProject(\n  juliaBin: string,\n  run: CommandRunner = createRunner(30 * 60_000),\n  dir: string = managedProjectDir(),\n  pins?: PackagePins,\n  opts?: { version?: string },\n): Promise<string> {\n  validatePins(pins);\n  if (managedProjectReady(dir, pins)) return dir;\n  mkdirSync(dir, { recursive: true });\n  if (usesPinnedEnv(opts?.version, pins)) {\n    copyFileSync(join(pinnedEnvDir(), \"Project.toml\"), join(dir, \"Project.toml\"));\n    copyFileSync(join(pinnedEnvDir(), \"Manifest.toml\"), join(dir, \"Manifest.toml\"));\n    await run(juliaBin, [\n      \"--startup-file=no\",\n      `--project=${dir}`,\n      \"-e\",\n      \"using Pkg; Pkg.instantiate(); Pkg.precompile()\",\n    ]);\n  } else {\n    const code = `using Pkg; Pkg.add(${packageSpecsCode(pins)}); Pkg.precompile()`;\n    await run(juliaBin, [\"--startup-file=no\", `--project=${dir}`, \"-e\", code]);\n  }\n  writeFileSync(sentinelPath(dir), expectedSentinel(pins));\n  return dir;\n}\n","import { join } from \"node:path\";\nimport type { ResolvedSpec } from \"@mcmcjs/core\";\nimport type { FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { runFit } from \"./fit\";\n\nexport interface MatrixEntry {\n  version: string;\n  status: \"ok\" | \"error\" | \"cancelled\";\n  samplesFile?: string;\n  runtimeActual?: string;\n  elapsedMs: number;\n  stage?: FitResult[\"stage\"];\n  error?: string;\n}\n\nexport interface MatrixResult {\n  entries: MatrixEntry[];\n  /** True only when every requested version ran and succeeded. */\n  ok: boolean;\n}\n\nexport interface ResolvedInvocation {\n  command: string;\n  args: string[];\n  version?: string;\n}\n\nexport interface MatrixIo {\n  spawn: FitRunner;\n  /** Directory the per-version samples files are written into. */\n  outDir: string;\n  /** Resolves a version/channel to a concrete invocation; injectable for tests. */\n  resolve: (version: string) => Promise<ResolvedInvocation>;\n  /** Provisions the managed env for a resolved version and returns its dir. */\n  ensure: (resolved: ResolvedInvocation) => Promise<string>;\n  /** Source path when the data came from a referenced file; recorded per version. */\n  dataFile?: string;\n  /** Overrides the recorded data hash (the data file's bytes hash). */\n  dataSha256?: string;\n  /** Continue after a version fails instead of stopping. */\n  keepGoing?: boolean;\n}\n\n/** Runs the same spec across several Julia versions, one samples file per version. */\nexport async function runMatrix(\n  spec: ResolvedSpec,\n  versions: string[],\n  io: MatrixIo,\n): Promise<MatrixResult> {\n  const entries: MatrixEntry[] = [];\n  for (const version of versions) {\n    let entry: MatrixEntry;\n    try {\n      const resolved = await io.resolve(version);\n      const projectDir = await io.ensure(resolved);\n      const versioned = { ...spec, backend: { ...spec.backend, version } };\n      const result = await runFit(versioned, resolved, {\n        spawn: io.spawn,\n        projectDir,\n        outPath: join(io.outDir, `${version}.samples.json`),\n        dataFile: io.dataFile,\n        dataSha256: io.dataSha256,\n      });\n      entry = {\n        version,\n        status: result.status,\n        samplesFile: result.samplesFile,\n        runtimeActual: result.runtimeActual,\n        elapsedMs: result.elapsedMs,\n        stage: result.stage,\n        error: result.error,\n      };\n    } catch (error) {\n      entry = { version, status: \"error\", elapsedMs: 0, error: (error as Error).message };\n    }\n    entries.push(entry);\n    // A cancelled run stops the whole matrix regardless of keepGoing.\n    if (entry.status === \"cancelled\") break;\n    if (entry.status === \"error\" && !io.keepGoing) break;\n  }\n  return {\n    entries,\n    ok: entries.length === versions.length && entries.every((e) => e.status === \"ok\"),\n  };\n}\n","import { DEFAULT_JULIA_CHANNEL } from \"@mcmcjs/core\";\nimport { type DoctorReport, runDoctor } from \"./doctor\";\nimport { type CommandRunner, createRunner, type ToolInfo } from \"./environment\";\n\n/** The official juliaup install script, piped to a shell by the install step. */\nconst JULIAUP_INSTALL_URL = \"https://install.julialang.org\";\n\n/** An executable and its arguments, run directly (no shell word-splitting). */\nexport interface InstallCommand {\n  command: string;\n  args: string[];\n}\n\n/**\n * The command that installs juliaup on the given platform, or null when\n * automatic install is not yet supported there.\n */\nexport function juliaupInstallCommand(platform: NodeJS.Platform): InstallCommand | null {\n  if (platform === \"win32\") {\n    // TODO: install juliaup on Windows via winget or the Microsoft Store.\n    return null;\n  }\n  // `--default-channel` makes the installer add the pinned Julia version (not\n  // just the latest \"release\") in the same step, so a clean machine lands on\n  // the exact version the committed Manifest was resolved for.\n  return {\n    command: \"sh\",\n    args: [\n      \"-c\",\n      `curl -fsSL ${JULIAUP_INSTALL_URL} | sh -s -- --yes --default-channel ${DEFAULT_JULIA_CHANNEL}`,\n    ],\n  };\n}\n\n/** A single provisioning step needed to make the toolchain ready. */\nexport interface SetupStep {\n  tool: \"juliaup\" | \"julia\";\n  /** A short description of what the step does. */\n  label: string;\n  /** The command to run, or null when the step cannot be performed automatically. */\n  command: InstallCommand | null;\n}\n\n/** The ordered steps needed to reach a ready toolchain, given the current state. */\nexport function planSetup(report: DoctorReport, platform: NodeJS.Platform): SetupStep[] {\n  // The pinned Julia is already the active default: nothing to do.\n  if (report.julia.found && report.julia.version === DEFAULT_JULIA_CHANNEL) return [];\n  if (report.juliaup.found) {\n    return [\n      {\n        tool: \"julia\",\n        label: `install the pinned Julia ${DEFAULT_JULIA_CHANNEL} via juliaup`,\n        command: {\n          command: report.juliaup.path ?? \"juliaup\",\n          args: [\"add\", DEFAULT_JULIA_CHANNEL],\n        },\n      },\n    ];\n  }\n  return [\n    {\n      tool: \"juliaup\",\n      label: `install juliaup with the pinned Julia ${DEFAULT_JULIA_CHANNEL}`,\n      command: juliaupInstallCommand(platform),\n    },\n  ];\n}\n\nexport type StepStatus = \"ran\" | \"skipped\" | \"failed\" | \"unsupported\";\n\nexport interface SetupStepResult extends SetupStep {\n  status: StepStatus;\n  /** Error detail when the step failed. */\n  detail?: string;\n}\n\nexport interface SetupResult {\n  juliaup: ToolInfo;\n  julia: ToolInfo;\n  /** True when Julia is available after setup. */\n  ready: boolean;\n  steps: SetupStepResult[];\n}\n\nexport interface SetupOptions {\n  /** Runs detection commands. Injectable for tests. */\n  runner?: CommandRunner;\n  /** Runs install steps, which may take several minutes. Injectable for tests. */\n  installer?: CommandRunner;\n  /** Target platform; defaults to the current process platform. */\n  platform?: NodeJS.Platform;\n  /** Plan the steps but do not run them. */\n  dryRun?: boolean;\n}\n\n/** Installs the Julia toolchain (juliaup and Julia) needed for inference. */\nexport async function runSetup(options: SetupOptions = {}): Promise<SetupResult> {\n  const {\n    runner,\n    installer = createRunner(15 * 60_000),\n    platform = process.platform,\n    dryRun = false,\n  } = options;\n\n  const before = await runDoctor(runner);\n  const plan = planSetup(before, platform);\n  // Nothing to install only when the pinned Julia is already the active\n  // default; a different installed Julia still triggers a pinned-version add.\n  if (plan.length === 0) return { ...before, steps: [] };\n\n  if (dryRun) {\n    return {\n      ...before,\n      steps: plan.map((step) => ({ ...step, status: step.command ? \"skipped\" : \"unsupported\" })),\n    };\n  }\n\n  const steps: SetupStepResult[] = [];\n  for (const step of plan) {\n    if (!step.command) {\n      steps.push({ ...step, status: \"unsupported\" });\n      continue;\n    }\n    try {\n      await installer(step.command.command, step.command.args);\n      steps.push({ ...step, status: \"ran\" });\n    } catch (error) {\n      const detail = error instanceof Error ? error.message : String(error);\n      steps.push({ ...step, status: \"failed\", detail });\n    }\n  }\n\n  const after = await runDoctor(runner);\n  return { juliaup: after.juliaup, julia: after.julia, ready: after.ready, steps };\n}\n","import type { CommandRunner, RuntimeVersion } from \"@mcmcjs/engine\";\n\ninterface ChannelInfo {\n  Name: string;\n  File: string;\n  Args?: string[];\n  Version?: string;\n  Arch?: string;\n}\n\ninterface Getconfig1 {\n  DefaultChannel: ChannelInfo | null;\n  OtherChannels: ChannelInfo[];\n}\n\nfunction parseChannel(value: unknown): ChannelInfo {\n  const c = value as Record<string, unknown>;\n  if (!c || typeof c.Name !== \"string\" || typeof c.File !== \"string\") {\n    throw new Error(\"unexpected `juliaup api getconfig1` channel shape\");\n  }\n  return {\n    Name: c.Name,\n    File: c.File,\n    Args: Array.isArray(c.Args) ? (c.Args as string[]) : undefined,\n    Version: typeof c.Version === \"string\" ? c.Version : undefined,\n    Arch: typeof c.Arch === \"string\" ? c.Arch : undefined,\n  };\n}\n\nfunction parseGetconfig1(raw: string): Getconfig1 {\n  let data: unknown;\n  try {\n    data = JSON.parse(raw);\n  } catch {\n    throw new Error(\"could not parse `juliaup api getconfig1` output as JSON\");\n  }\n  const obj = data as Record<string, unknown>;\n  if (!obj || typeof obj !== \"object\" || !Array.isArray(obj.OtherChannels)) {\n    throw new Error(\"unexpected `juliaup api getconfig1` output\");\n  }\n  return {\n    DefaultChannel: obj.DefaultChannel ? parseChannel(obj.DefaultChannel) : null,\n    OtherChannels: obj.OtherChannels.map(parseChannel),\n  };\n}\n\nfunction toVersion(channel: ChannelInfo, isDefault: boolean): RuntimeVersion {\n  return { id: channel.Name, version: channel.Version, path: channel.File || undefined, isDefault };\n}\n\n/** Lists the installed Julia versions, marking the default channel. */\nexport async function listVersions(bin: string, run: CommandRunner): Promise<RuntimeVersion[]> {\n  const config = parseGetconfig1(await run(bin, [\"api\", \"getconfig1\"]));\n  const versions: RuntimeVersion[] = [];\n  if (config.DefaultChannel) versions.push(toVersion(config.DefaultChannel, true));\n  for (const channel of config.OtherChannels) versions.push(toVersion(channel, false));\n  return versions;\n}\n\nexport async function addVersion(\n  bin: string,\n  channel: string,\n  opts: { default?: boolean },\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, [\"add\", channel]);\n  if (opts.default) await run(bin, [\"default\", channel]);\n}\n\nexport async function removeVersion(\n  bin: string,\n  channel: string,\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, [\"remove\", channel]);\n}\n\nexport async function setDefaultVersion(\n  bin: string,\n  channel: string,\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, [\"default\", channel]);\n}\n\nexport async function updateVersion(\n  bin: string,\n  channel: string | undefined,\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, channel ? [\"update\", channel] : [\"update\"]);\n}\n\nexport async function gcVersions(bin: string, run: CommandRunner): Promise<void> {\n  await run(bin, [\"gc\"]);\n}\n\n/** Resolves a channel to a concrete invocation, preferring its absolute binary path. */\nexport async function resolveVersion(\n  bin: string,\n  channel: string,\n  run: CommandRunner,\n): Promise<{ command: string; args: string[]; version?: string }> {\n  const config = parseGetconfig1(await run(bin, [\"api\", \"getconfig1\"]));\n  const all = config.DefaultChannel\n    ? [config.DefaultChannel, ...config.OtherChannels]\n    : config.OtherChannels;\n  const match = all.find((c) => c.Name === channel);\n  if (!match?.File) {\n    throw new Error(\n      `Julia version \"${channel}\" is not installed. Add it with: mcmc julia version add ${channel}`,\n    );\n  }\n  return { command: match.File, args: match.Args ?? [], version: match.Version };\n}\n\n/** Throws with an actionable message if any requested channel is not installed. */\nexport function assertVersionsInstalled(channels: string[], installed: RuntimeVersion[]): void {\n  const have = new Set(installed.map((v) => v.id));\n  const missing = channels.filter((c) => !have.has(c));\n  if (missing.length > 0) {\n    const fixes = missing.map((m) => `mcmc julia version add ${m}`).join(\"; \");\n    throw new Error(\n      `Julia version(s) not installed: ${missing.join(\", \")}. Install with: ${fixes}`,\n    );\n  }\n}\n","import { spawn } from \"node:child_process\";\nimport { mkdirSync, readdirSync, readFileSync, rmdirSync, rmSync, statSync } from \"node:fs\";\nimport { createConnection, type Socket } from \"node:net\";\nimport { join } from \"node:path\";\nimport type { ResolvedSpec } from \"@mcmcjs/core\";\nimport type { FitResult } from \"@mcmcjs/engine\";\nimport { parseDrawBatchLine, parseProgressLine } from \"@mcmcjs/engine\";\nimport { type FitIo, finalizeOkFit, fitRequest, runFit } from \"./fit\";\nimport { sha256, sharedTmpParent, toStage, workerPath } from \"./runner-common\";\n\nconst START_WAIT_MS = 180_000;\nconst CONNECT_TIMEOUT_MS = 1_000;\nconst STOP_ACK_TIMEOUT_MS = 3_000;\n\n/** Same 30-minute budget as the one-shot driver; MCMC_WORKER_TIMEOUT_MS overrides. */\nfunction fitInactivityTimeoutMs(): number {\n  const fromEnv = Number(process.env.MCMC_WORKER_TIMEOUT_MS);\n  return Number.isFinite(fromEnv) && fromEnv > 0 ? fromEnv : 30 * 60_000;\n}\n\n/** A hung worker is not retried; the fit is reported failed instead. */\nclass WorkerTimeoutError extends Error {}\n\n/** The caller aborted the fit; the worker is killed and the run ends cancelled. */\nclass FitCancelledError extends Error {}\n\n/** The pidfile a worker writes beside its socket so a fit can be killed cross-process. */\nfunction workerPidPath(socket: string): string {\n  return `${socket}.pid`;\n}\n\n/**\n * Force-kills the worker serving `socket` (by the pid it wrote beside the\n * socket) and clears the socket and pidfile, so the next fit cold-starts a\n * fresh worker. Used to stop a worker mid-fit, which the polite stop cannot do\n * while it is busy sampling.\n */\nexport function killWorker(socket: string): void {\n  const pidPath = workerPidPath(socket);\n  try {\n    const pid = Number(readFileSync(pidPath, \"utf8\").trim());\n    if (Number.isInteger(pid) && pid > 0) {\n      // The worker is a detached process-group leader, so signaling -pid takes\n      // down any precompile/child processes it spawned, not just the parent.\n      try {\n        process.kill(-pid, \"SIGKILL\");\n      } catch {\n        process.kill(pid, \"SIGKILL\");\n      }\n    }\n  } catch {}\n  rmSync(socket, { force: true });\n  rmSync(pidPath, { force: true });\n}\n\n/** Where worker sockets live; runtime dir when available, the shared tmp parent otherwise. */\nexport function workersDir(): string {\n  const runtime = process.env.XDG_RUNTIME_DIR;\n  const dir = runtime ? join(runtime, \"mcmcjs\") : join(sharedTmpParent(), \"workers\");\n  mkdirSync(dir, { recursive: true, mode: 0o700 });\n  return dir;\n}\n\n/** One worker per (Julia binary, project env) pair, named by a key hash. */\nexport function workerSocketPath(command: string, projectDir: string): string {\n  return join(workersDir(), `worker-${sha256(`${command}\\n${projectDir}`).slice(0, 12)}.sock`);\n}\n\nfunction connectOnce(path: string): Promise<Socket> {\n  return new Promise((resolve, reject) => {\n    const sock = createConnection(path);\n    const timer = setTimeout(() => {\n      sock.destroy();\n      reject(new Error(\"connect timeout\"));\n    }, CONNECT_TIMEOUT_MS);\n    sock.once(\"connect\", () => {\n      clearTimeout(timer);\n      resolve(sock);\n    });\n    sock.once(\"error\", (error) => {\n      clearTimeout(timer);\n      reject(error);\n    });\n  });\n}\n\nconst delay = (ms: number) => new Promise((resolve) => setTimeout(resolve, ms));\n\n/**\n * Serializes cold starts: only one invocation spawns a worker per socket path;\n * the rest poll the socket. A stale lock (a dead spawner) is taken over.\n */\nfunction acquireStartLock(socketPath: string): boolean {\n  const lock = `${socketPath}.start`;\n  try {\n    mkdirSync(lock);\n    return true;\n  } catch {\n    try {\n      if (Date.now() - statSync(lock).mtimeMs > START_WAIT_MS) {\n        rmdirSync(lock);\n        mkdirSync(lock);\n        return true;\n      }\n    } catch {}\n    return false;\n  }\n}\n\nfunction releaseStartLock(socketPath: string): void {\n  try {\n    rmdirSync(`${socketPath}.start`);\n  } catch {}\n}\n\n/** Connects to the keyed worker, starting one (detached) if none answers. */\nexport async function ensureWorker(\n  resolved: { command: string; args: string[] },\n  projectDir: string,\n  notify?: (line: string) => void,\n  signal?: AbortSignal,\n): Promise<Socket> {\n  const path = workerSocketPath(resolved.command, projectDir);\n  try {\n    return await connectOnce(path);\n  } catch {}\n  // Honor a cancel that arrived during the (possibly slow) cold start; the\n  // detached worker keeps loading and stays warm for the next fit.\n  if (signal?.aborted) throw new FitCancelledError();\n\n  let spawnFailure: Error | undefined;\n  const startedHere = acquireStartLock(path);\n  if (startedHere) {\n    try {\n      rmSync(path, { force: true });\n      notify?.(\"starting the Julia worker (first use loads Turing, can take a minute)...\");\n      const child = spawn(\n        resolved.command,\n        [...resolved.args, \"--startup-file=no\", `--project=${projectDir}`, workerPath(), path],\n        { detached: true, stdio: \"ignore\" },\n      );\n      child.on(\"error\", (error) => {\n        spawnFailure = error;\n      });\n      child.on(\"exit\", (code) => {\n        if (code !== 0 && code !== null) {\n          spawnFailure = new Error(`the worker exited with code ${code} before serving`);\n        }\n      });\n      child.unref();\n    } catch (error) {\n      releaseStartLock(path);\n      throw error;\n    }\n  }\n\n  try {\n    const deadline = Date.now() + START_WAIT_MS;\n    for (;;) {\n      if (signal?.aborted) throw new FitCancelledError();\n      if (spawnFailure) throw spawnFailure;\n      try {\n        return await connectOnce(path);\n      } catch {}\n      if (Date.now() > deadline) throw new Error(\"the Julia worker did not start in time\");\n      await delay(250);\n    }\n  } finally {\n    if (startedHere) releaseStartLock(path);\n  }\n}\n\n/**\n * Streams progress lines to onProgress and resolves with the final result\n * line. The inactivity deadline (reset by every byte the worker sends, so\n * healthy long fits survive on their progress stream) rejects with\n * WorkerTimeoutError rather than hanging forever on a wedged worker.\n */\nfunction readWorkerResponse(\n  sock: Socket,\n  onProgress?: FitIo[\"onProgress\"],\n  onDraws?: FitIo[\"onDraws\"],\n  signal?: AbortSignal,\n  inactivityMs = fitInactivityTimeoutMs(),\n): Promise<Record<string, unknown>> {\n  return new Promise((resolve, reject) => {\n    let pending = \"\";\n    let settled = false;\n    const onAbort = () => {\n      settle(() => {\n        sock.destroy();\n        reject(new FitCancelledError());\n      });\n    };\n    const settle = (fn: () => void) => {\n      if (settled) return;\n      settled = true;\n      sock.setTimeout(0);\n      signal?.removeEventListener(\"abort\", onAbort);\n      fn();\n    };\n    if (signal) {\n      if (signal.aborted) onAbort();\n      else signal.addEventListener(\"abort\", onAbort, { once: true });\n    }\n    sock.setTimeout(inactivityMs, () => {\n      const error = new WorkerTimeoutError(\n        `the worker sent nothing for ${Math.round(inactivityMs / 60_000)} minutes`,\n      );\n      settle(() => {\n        sock.destroy();\n        reject(error);\n      });\n    });\n    sock.on(\"data\", (chunk: Buffer) => {\n      pending += chunk.toString(\"utf8\");\n      for (;;) {\n        const at = pending.indexOf(\"\\n\");\n        if (at === -1) break;\n        const line = pending.slice(0, at).trim();\n        pending = pending.slice(at + 1);\n        if (!line) continue;\n        const progress = parseProgressLine(line);\n        if (progress) {\n          onProgress?.(progress);\n          continue;\n        }\n        const batch = parseDrawBatchLine(line);\n        if (batch) {\n          onDraws?.(batch);\n          continue;\n        }\n        try {\n          const doc = JSON.parse(line) as Record<string, unknown>;\n          settle(() => {\n            sock.end();\n            resolve(doc);\n          });\n          return;\n        } catch {}\n      }\n    });\n    sock.on(\"error\", (error) => settle(() => reject(error)));\n    sock.on(\"close\", () => settle(() => reject(new Error(\"worker closed the connection\"))));\n  });\n}\n\n/** Runs one fit through the persistent worker. Throws on worker-infrastructure failure. */\nexport async function runFitViaWorker(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: FitIo & { notify?: (line: string) => void },\n): Promise<FitResult> {\n  const startedAt = new Date().toISOString();\n  const start = performance.now();\n  if (io.signal?.aborted) {\n    return { status: \"cancelled\", runtimeRequested: spec.backend.version, elapsedMs: 0 };\n  }\n  let sock: Socket;\n  try {\n    sock = await ensureWorker(resolved, io.projectDir, io.notify, io.signal);\n  } catch (error) {\n    // Cancelled during the cold start: the worker (if any) is still idle and\n    // stays warm; no fit was dispatched, so just report cancelled.\n    if (error instanceof FitCancelledError) {\n      return {\n        status: \"cancelled\",\n        runtimeRequested: spec.backend.version,\n        elapsedMs: Math.round(performance.now() - start),\n      };\n    }\n    throw error;\n  }\n  if (io.signal?.aborted) {\n    // Aborted in the gap before dispatch; drop the connection, leave the worker\n    // idle and warm. The worker reads an empty line and loops back to accept.\n    sock.destroy();\n    return {\n      status: \"cancelled\",\n      runtimeRequested: spec.backend.version,\n      elapsedMs: Math.round(performance.now() - start),\n    };\n  }\n  sock.write(\n    `${JSON.stringify(fitRequest(spec, io.outPath, { streamDraws: io.onDraws !== undefined, drawBatchSize: io.drawBatchSize }))}\\n`,\n  );\n  let final: Record<string, unknown>;\n  try {\n    final = await readWorkerResponse(sock, io.onProgress, io.onDraws, io.signal);\n  } catch (error) {\n    if (error instanceof FitCancelledError) {\n      // The worker is mid-sample and cannot answer a polite stop; kill it so it\n      // stops promptly and the next fit cold-starts a fresh one.\n      killWorker(workerSocketPath(resolved.command, io.projectDir));\n      return {\n        status: \"cancelled\",\n        runtimeRequested: spec.backend.version,\n        elapsedMs: Math.round(performance.now() - start),\n      };\n    }\n    throw error;\n  }\n  const elapsedMs = Math.round(performance.now() - start);\n\n  if (final.ok !== true) {\n    // \"worker\" is the worker's own protocol failure, not a model failure;\n    // throwing hands the fit to the one-shot driver.\n    if (final.stage === \"worker\") throw new Error(String(final.error ?? \"worker error\"));\n    return {\n      status: \"error\",\n      runtimeRequested: spec.backend.version,\n      elapsedMs,\n      stage: toStage(final.stage),\n      error: String(final.error ?? \"worker error\"),\n    };\n  }\n  return finalizeOkFit(\n    spec,\n    resolved,\n    io,\n    final.provenance as Record<string, unknown> | undefined,\n    startedAt,\n    elapsedMs,\n  );\n}\n\n/**\n * Runs a fit through the worker when asked (and possible), falling back to the\n * one-shot driver on worker-infrastructure failures. Two exceptions never fall\n * back: a fit that genuinely failed (model error) is returned, and a hung\n * worker (timeout) is reported rather than silently re-run for another\n * half hour.\n */\nexport async function runFitAuto(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: FitIo & { daemon?: boolean; notify?: (line: string) => void },\n): Promise<FitResult> {\n  if (io.signal?.aborted) {\n    return { status: \"cancelled\", runtimeRequested: spec.backend.version, elapsedMs: 0 };\n  }\n  if (io.daemon && process.platform !== \"win32\") {\n    const start = performance.now();\n    try {\n      return await runFitViaWorker(spec, resolved, io);\n    } catch (error) {\n      if (error instanceof WorkerTimeoutError) {\n        return {\n          status: \"error\",\n          runtimeRequested: spec.backend.version,\n          elapsedMs: Math.round(performance.now() - start),\n          stage: \"worker\",\n          error: `${error.message}; the worker may be wedged, try mcmc daemon stop`,\n        };\n      }\n      io.notify?.(\n        `worker unavailable (${(error as Error).message}); falling back to a one-shot run`,\n      );\n    }\n  }\n  return runFit(spec, resolved, io);\n}\n\nexport interface WorkerStatus {\n  socket: string;\n  alive: boolean;\n}\n\n/** Lists known worker sockets and whether each answers. */\nexport async function listWorkers(): Promise<WorkerStatus[]> {\n  const dir = workersDir();\n  const sockets = readdirSync(dir).filter((f) => f.startsWith(\"worker-\") && f.endsWith(\".sock\"));\n  const statuses: WorkerStatus[] = [];\n  for (const name of sockets) {\n    const socket = join(dir, name);\n    let alive = false;\n    try {\n      const sock = await connectOnce(socket);\n      sock.destroy();\n      alive = true;\n    } catch {}\n    statuses.push({ socket, alive });\n  }\n  return statuses;\n}\n\nexport type StopOutcome = \"stopped\" | \"stale\" | \"pending\";\n\n/**\n * Asks one worker to shut down. 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+{"version":3,"sources":["../src/index.ts","../../../node_modules/.pnpm/tsup@8.5.1_@microsoft+api-extractor@7.58.9_@types+node@24.12.4__postcss@8.5.15_typescript@6.0.3/node_modules/tsup/assets/cjs_shims.js","../src/environment.ts","../src/doctor.ts","../src/engine.ts","../src/fit.ts","../src/runner-common.ts","../src/loglik.ts","../src/predict.ts","../src/project.ts","../src/run-matrix.ts","../src/setup.ts","../src/versions.ts","../src/worker.ts"],"sourcesContent":["export type { DoctorReport } from \"./doctor\";\nexport { runDoctor } from \"./doctor\";\nexport { juliaEngine } from \"./engine\";\nexport type { CommandRunner, ToolInfo } from \"./environment\";\nexport { detectJulia, detectJuliaup } from \"./environment\";\nexport type { FitIo } from \"./fit\";\nexport { runFit } from \"./fit\";\nexport { type LogLikIo, runLogLik } from \"./loglik\";\nexport type { PredictIo } from \"./predict\";\nexport { predictData, runPredict } from \"./predict\";\nexport type { PackagePins } from \"./project\";\nexport {\n  ensureProject,\n  managedProjectDir,\n  managedProjectReady,\n  validatePins,\n  validateVersionString,\n} from \"./project\";\nexport type { MatrixEntry, MatrixIo, MatrixResult } from \"./run-matrix\";\nexport { runMatrix } from \"./run-matrix\";\nexport { sharedTmpParent } from \"./runner-common\";\nexport type {\n  InstallCommand,\n  SetupOptions,\n  SetupResult,\n  SetupStep,\n  SetupStepResult,\n  StepStatus,\n} from \"./setup\";\nexport { juliaupInstallCommand, planSetup, runSetup } from \"./setup\";\nexport {\n  addVersion,\n  assertVersionsInstalled,\n  gcVersions,\n  listVersions,\n  removeVersion,\n  resolveVersion,\n  setDefaultVersion,\n  updateVersion,\n} from \"./versions\";\nexport type { WorkerStatus } from \"./worker\";\nexport { killWorker, listWorkers, runFitAuto, stopWorker } from \"./worker\";\n","// Shim globals in cjs bundle\n// There's a weird bug that esbuild will always inject importMetaUrl\n// if we export it as `const importMetaUrl = ... __filename ...`\n// But using a function will not cause this issue\n\nconst getImportMetaUrl = () => \n  typeof document === \"undefined\" \n    ? new URL(`file:${__filename}`).href \n    : (document.currentScript && document.currentScript.tagName.toUpperCase() === 'SCRIPT') \n      ? document.currentScript.src \n      : new URL(\"main.js\", document.baseURI).href;\n\nexport const importMetaUrl = /* @__PURE__ */ getImportMetaUrl()\n","import { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport { type CommandRunner, createRunner, type ToolInfo } from \"@mcmcjs/engine\";\n\nexport type { CommandRunner, ToolInfo } from \"@mcmcjs/engine\";\nexport { createRunner } from \"@mcmcjs/engine\";\n\nconst defaultRunner = createRunner();\n\n// juliaup installs its shims under the home directory; we also fall back to\n// whatever is on PATH. $HOME is honored first so a sandbox that redirects HOME\n// (mcmc sandbox --strict) finds its own juliaup, not the user's.\nfunction candidates(binary: string): string[] {\n  const home = process.env.HOME || homedir();\n  return [join(home, \".juliaup\", \"bin\", binary), binary];\n}\n\nasync function detect(\n  binary: string,\n  parseVersion: (stdout: string) => string | undefined,\n  runner: CommandRunner,\n): Promise<ToolInfo> {\n  for (const path of candidates(binary)) {\n    try {\n      const version = parseVersion(await runner(path, [\"--version\"]));\n      if (version) return { found: true, version, path };\n    } catch {\n      // not available at this path; try the next candidate\n    }\n  }\n  return { found: false };\n}\n\nconst versionNumber = (stdout: string): string | undefined => stdout.match(/(\\d+\\.\\d+\\.\\d+)/)?.[1];\n\n/** Detects the Julia runtime via `julia --version`. */\nexport function detectJulia(runner: CommandRunner = defaultRunner): Promise<ToolInfo> {\n  return detect(\"julia\", versionNumber, runner);\n}\n\n/** Detects the juliaup version manager via `juliaup --version`. */\nexport function detectJuliaup(runner: CommandRunner = defaultRunner): Promise<ToolInfo> {\n  return detect(\"juliaup\", versionNumber, runner);\n}\n","import { type CommandRunner, detectJulia, detectJuliaup, type ToolInfo } from \"./environment\";\n\n/** A summary of the Julia toolchain available for inference. */\nexport interface DoctorReport {\n  juliaup: ToolInfo;\n  julia: ToolInfo;\n  /** True when Julia itself is available (the minimum needed to run inference). */\n  ready: boolean;\n}\n\n/** Detects the installed Julia toolchain and reports whether inference can run. */\nexport async function runDoctor(runner?: CommandRunner): Promise<DoctorReport> {\n  const [juliaup, julia] = await Promise.all([detectJuliaup(runner), detectJulia(runner)]);\n  return { juliaup, julia, ready: julia.found };\n}\n","import type { Engine, EngineContext, HealthReport } from \"@mcmcjs/engine\";\nimport { runDoctor } from \"./doctor\";\n\nconst JULIAUP_URL = \"https://github.com/JuliaLang/juliaup\";\n\nexport const juliaEngine: Engine = {\n  id: \"julia\",\n  displayName: \"Julia\",\n  capabilities: { setup: true, versions: true, fit: true, predict: true },\n  async doctor(ctx: EngineContext): Promise<HealthReport> {\n    const report = await runDoctor(ctx.run);\n    return {\n      engineId: \"julia\",\n      ready: report.ready,\n      tools: [\n        { name: \"juliaup\", ...report.juliaup },\n        { name: \"julia\", ...report.julia },\n      ],\n      hint: report.ready\n        ? undefined\n        : `Julia not found. Install it with juliaup (${JULIAUP_URL}), or run \\`mcmc setup\\`.`,\n    };\n  },\n};\n","import { existsSync, mkdirSync, mkdtempSync, readFileSync, rmSync, writeFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport {\n  canonicalJson,\n  parseSamples,\n  type ResolvedSpec,\n  RUN_RECORD_SCHEMA_VERSION,\n  type RunRecord,\n} from \"@mcmcjs/core\";\nimport type { DrawBatch, FitProgress, FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { driverPath, lastJsonLine, sha256, sharedTmpParent, toStage } from \"./runner-common\";\n\nexport interface FitIo {\n  /** Spawns the Julia process; injectable so runFit is testable without Julia. */\n  spawn: FitRunner;\n  /** The managed Julia project directory passed as --project. */\n  projectDir: string;\n  /** Where the samples file is written. */\n  outPath: string;\n  /** Where the run record is written; defaults to `<outPath>.run.json`. */\n  recordPath?: string;\n  /** Streamed per-chain sampling progress. */\n  onProgress?: (progress: FitProgress) => void;\n  /** Streamed draw batches as sampling proceeds. */\n  onDraws?: (batch: DrawBatch) => void;\n  /** Raw console lines from the sampler as they arrive (structured progress/draws\n   * lines are filtered out), for surfacing solver logs live. */\n  onLog?: (line: string, stream: \"stdout\" | \"stderr\") => void;\n  /** Draws per streamed batch (driver default 25); lower it when models have many leaves. */\n  drawBatchSize?: number;\n  /** Aborts an in-progress fit; the run then ends with a \"cancelled\" status. */\n  signal?: AbortSignal;\n  /** Source path when the data came from a referenced file; recorded, not copied. */\n  dataFile?: string;\n  /** Overrides the recorded data hash (e.g. the data file's bytes hash). */\n  dataSha256?: string;\n  tmpDir?: string;\n}\n\n/** A fresh request dir under the shared per-user tmp parent. */\nexport function makeRequestDir(kind: string): string {\n  const parent = sharedTmpParent();\n  mkdirSync(parent, { recursive: true });\n  return mkdtempSync(join(parent, `${kind}-`));\n}\n\n/** The driver/worker request object for one fit. */\nexport function fitRequest(\n  spec: ResolvedSpec,\n  outPath: string,\n  opts?: { streamDraws?: boolean; drawBatchSize?: number },\n): Record<string, unknown> {\n  return {\n    schema_version: spec.schema_version,\n    backend: { id: spec.backend.id },\n    model: { file: spec.modelPath, entry: spec.model.entry },\n    data: spec.data,\n    sampler: spec.sampler,\n    seed: spec.seed,\n    out: outPath,\n    ...(opts?.streamDraws ? { stream_draws: true } : {}),\n    ...(opts?.drawBatchSize ? { draw_batch_size: opts.drawBatchSize } : {}),\n  };\n}\n\n/**\n * Validates the written samples and records provenance; the success tail\n * shared by the one-shot driver and the worker paths.\n */\nexport function finalizeOkFit(\n  spec: ResolvedSpec,\n  resolved: { command: string },\n  io: Pick<FitIo, \"outPath\" | \"recordPath\" | \"dataFile\" | \"dataSha256\">,\n  provenance: Record<string, unknown> | undefined,\n  startedAt: string,\n  elapsedMs: number,\n): FitResult {\n  const runtimeRequested = spec.backend.version;\n  if (!existsSync(io.outPath)) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: \"the runtime reported success but wrote no samples file\",\n    };\n  }\n  try {\n    parseSamples(readFileSync(io.outPath, \"utf8\"));\n  } catch (error) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: `samples file did not parse: ${(error as Error).message}`,\n    };\n  }\n\n  const julia = provenance?.julia_version as string | undefined;\n  const record: RunRecord = {\n    schema_version: RUN_RECORD_SCHEMA_VERSION,\n    spec_hash: spec.specHash,\n    seed: spec.seed,\n    backend: { id: spec.backend.id, runtime: spec.backend.runtime },\n    runtime: { requested: runtimeRequested, actual: julia, path: resolved.command },\n    manifest_sha256: provenance?.manifest_sha256 as string | undefined,\n    packages: provenance?.packages as Record<string, string> | undefined,\n    model_sha256: existsSync(spec.modelPath)\n      ? sha256(readFileSync(spec.modelPath, \"utf8\"))\n      : undefined,\n    data_sha256: io.dataSha256 ?? sha256(canonicalJson(spec.data)),\n    ...(io.dataFile ? { data_file: io.dataFile } : {}),\n    samples_file: io.outPath,\n    started_at: startedAt,\n    elapsed_ms: elapsedMs,\n  };\n  writeFileSync(io.recordPath ?? `${io.outPath}.run.json`, `${JSON.stringify(record, null, 2)}\\n`);\n\n  return {\n    status: \"ok\",\n    samplesFile: io.outPath,\n    runtimeRequested,\n    runtimeActual: julia,\n    elapsedMs,\n  };\n}\n\n/** Runs one inference for a resolved spec on a resolved runtime invocation. */\nexport async function runFit(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: FitIo,\n): Promise<FitResult> {\n  const startedAt = new Date().toISOString();\n  const start = performance.now();\n  const runtimeRequested = spec.backend.version;\n\n  if (io.signal?.aborted) {\n    return { status: \"cancelled\", runtimeRequested, elapsedMs: 0 };\n  }\n\n  const ownTmp = io.tmpDir === undefined;\n  const tmp = io.tmpDir ?? makeRequestDir(\"fit\");\n  const requestPath = join(tmp, \"request.json\");\n  writeFileSync(\n    requestPath,\n    JSON.stringify(\n      fitRequest(spec, io.outPath, {\n        streamDraws: io.onDraws !== undefined,\n        drawBatchSize: io.drawBatchSize,\n      }),\n    ),\n  );\n\n  const args = [\n    ...resolved.args,\n    \"--startup-file=no\",\n    ...(spec.sampler.parallel === \"threads\" ? [\"--threads=auto\"] : []),\n    `--project=${io.projectDir}`,\n    driverPath(),\n    requestPath,\n  ];\n  let stdout: string;\n  let stderr: string;\n  let code: number;\n  let cancelled: boolean | undefined;\n  try {\n    ({ stdout, stderr, code, cancelled } = await io.spawn(resolved.command, args, {\n      onProgress: io.onProgress,\n      onDraws: io.onDraws,\n      onLog: io.onLog,\n      signal: io.signal,\n    }));\n  } finally {\n    if (ownTmp) rmSync(tmp, { recursive: true, force: true });\n  }\n  const elapsedMs = Math.round(performance.now() - start);\n\n  if (cancelled) {\n    return { status: \"cancelled\", runtimeRequested, elapsedMs };\n  }\n\n  if (code !== 0 || !existsSync(io.outPath)) {\n    const failure = lastJsonLine(stderr);\n    const stage = toStage(failure?.stage);\n    const error =\n      (failure?.error as string) ??\n      stderr.trim().split(\"\\n\").pop() ??\n      `julia exited with code ${code}`;\n    return { status: \"error\", runtimeRequested, elapsedMs, stage, error };\n  }\n\n  return finalizeOkFit(spec, resolved, io, lastJsonLine(stdout), startedAt, elapsedMs);\n}\n","import { createHash } from \"node:crypto\";\nimport { existsSync } from \"node:fs\";\nimport { tmpdir } from \"node:os\";\nimport { dirname, join } from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\nimport type { FitResult } from \"@mcmcjs/engine\";\n\n/**\n * The per-user parent for all mcmcjs temp state. The uid suffix keeps users\n * on a shared /tmp out of each other's way (macOS tmpdir is per-user already,\n * Linux /tmp is not).\n */\nexport function sharedTmpParent(): string {\n  const uid = typeof process.getuid === \"function\" ? `-${process.getuid()}` : \"\";\n  return join(tmpdir(), `mcmcjs${uid}`);\n}\n\n// The driver scripts sit next to the bundle in the published dist/ (tsup copies\n// them there), but under src/driver/ when running from source (tests, tsx). Try\n// the bundle layout first, fall back to the source layout.\nfunction driverFile(name: string): string {\n  const here = dirname(fileURLToPath(import.meta.url));\n  const beside = join(here, name);\n  return existsSync(beside) ? beside : join(here, \"driver\", name);\n}\n\n/** Path to the shipped Julia driver. */\nexport function driverPath(): string {\n  return driverFile(\"driver.jl\");\n}\n\n/** Path to the shipped persistent worker. */\nexport function workerPath(): string {\n  return driverFile(\"worker.jl\");\n}\n\n/**\n * Directory holding the shipped, resolved Julia env (Project.toml + Manifest.toml),\n * next to this module in dist/. A fresh default provision instantiates this exact\n * package set rather than re-resolving the latest compatible versions.\n */\nexport function pinnedEnvDir(): string {\n  return join(dirname(fileURLToPath(import.meta.url)), \"julia-env\");\n}\n\nexport function sha256(text: string): string {\n  return createHash(\"sha256\").update(text).digest(\"hex\");\n}\n\n/** Parses the last JSON-object line of text (the driver's provenance or error line). */\nexport function lastJsonLine(text: string): Record<string, unknown> | undefined {\n  for (const line of text.trimEnd().split(\"\\n\").reverse()) {\n    const trimmed = line.trim();\n    if (!trimmed.startsWith(\"{\")) continue;\n    try {\n      return JSON.parse(trimmed) as Record<string, unknown>;\n    } catch {\n      return undefined;\n    }\n  }\n  return undefined;\n}\n\nconst STAGES = new Set<NonNullable<FitResult[\"stage\"]>>([\n  \"compile\",\n  \"sample\",\n  \"load_samples\",\n  \"predict\",\n  \"write\",\n  \"spawn\",\n  \"worker\",\n]);\n\n/** Narrows a driver-reported stage string to the known set. */\nexport function toStage(value: unknown): FitResult[\"stage\"] {\n  return typeof value === \"string\" && STAGES.has(value as NonNullable<FitResult[\"stage\"]>)\n    ? (value as FitResult[\"stage\"])\n    : undefined;\n}\n","import { existsSync, readFileSync, rmSync, writeFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport {\n  canonicalJson,\n  parseSamples,\n  type ResolvedSpec,\n  RUN_RECORD_SCHEMA_VERSION,\n  type RunRecord,\n} from \"@mcmcjs/core\";\nimport type { FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { makeRequestDir } from \"./fit\";\nimport { driverPath, lastJsonLine, sha256, toStage } from \"./runner-common\";\n\nexport interface LogLikIo {\n  /** Spawns the Julia process; injectable so runLogLik is testable without Julia. */\n  spawn: FitRunner;\n  projectDir: string;\n  /** Where the pointwise log-likelihood file is written (samples wire, one column per observation). */\n  outPath: string;\n  /** The posterior samples file the log-likelihood is evaluated at. */\n  samplesPath: string;\n  tmpDir?: string;\n}\n\n/**\n * Computes the pointwise log-likelihood of the observed data at each posterior\n * draw: one column per observation, in the same wire format as a samples file.\n * This is the input LOO/WAIC model comparison needs.\n */\nexport async function runLogLik(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: LogLikIo,\n): Promise<FitResult> {\n  const startedAt = new Date().toISOString();\n  const start = performance.now();\n  const runtimeRequested = spec.backend.version;\n\n  const ownTmp = io.tmpDir === undefined;\n  const tmp = io.tmpDir ?? makeRequestDir(\"loglik\");\n  const requestPath = join(tmp, \"request.json\");\n  writeFileSync(\n    requestPath,\n    JSON.stringify({\n      mode: \"loglik\",\n      schema_version: spec.schema_version,\n      backend: { id: spec.backend.id },\n      model: { file: spec.modelPath, entry: spec.model.entry },\n      data: spec.data,\n      samples: io.samplesPath,\n      seed: spec.seed,\n      out: io.outPath,\n    }),\n  );\n\n  const args = [\n    ...resolved.args,\n    \"--startup-file=no\",\n    `--project=${io.projectDir}`,\n    driverPath(),\n    requestPath,\n  ];\n  let stdout: string;\n  let stderr: string;\n  let code: number;\n  try {\n    ({ stdout, stderr, code } = await io.spawn(resolved.command, args));\n  } finally {\n    if (ownTmp) rmSync(tmp, { recursive: true, force: true });\n  }\n  const elapsedMs = Math.round(performance.now() - start);\n\n  if (code !== 0 || !existsSync(io.outPath)) {\n    const failure = lastJsonLine(stderr);\n    const error =\n      (failure?.error as string) ??\n      stderr.trim().split(\"\\n\").pop() ??\n      `julia exited with code ${code}`;\n    return { status: \"error\", runtimeRequested, elapsedMs, stage: toStage(failure?.stage), error };\n  }\n\n  try {\n    parseSamples(readFileSync(io.outPath, \"utf8\"));\n  } catch (error) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: `log-likelihood file did not parse: ${(error as Error).message}`,\n    };\n  }\n\n  const provenance = lastJsonLine(stdout);\n  const julia = provenance?.julia_version as string | undefined;\n  const record: RunRecord = {\n    schema_version: RUN_RECORD_SCHEMA_VERSION,\n    spec_hash: spec.specHash,\n    seed: spec.seed,\n    backend: { id: spec.backend.id, runtime: spec.backend.runtime },\n    runtime: { requested: runtimeRequested, actual: julia, path: resolved.command },\n    manifest_sha256: provenance?.manifest_sha256 as string | undefined,\n    packages: provenance?.packages as Record<string, string> | undefined,\n    model_sha256: existsSync(spec.modelPath)\n      ? sha256(readFileSync(spec.modelPath, \"utf8\"))\n      : undefined,\n    data_sha256: sha256(canonicalJson(spec.data)),\n    posterior_samples: io.samplesPath,\n    posterior_samples_sha256: existsSync(io.samplesPath)\n      ? sha256(readFileSync(io.samplesPath, \"utf8\"))\n      : undefined,\n    samples_file: io.outPath,\n    started_at: startedAt,\n    elapsed_ms: elapsedMs,\n  };\n  writeFileSync(`${io.outPath}.run.json`, `${JSON.stringify(record, null, 2)}\\n`);\n\n  return {\n    status: \"ok\",\n    samplesFile: io.outPath,\n    runtimeRequested,\n    runtimeActual: julia,\n    elapsedMs,\n  };\n}\n","import { existsSync, readFileSync, rmSync, writeFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport {\n  canonicalJson,\n  parseSamples,\n  type ResolvedSpec,\n  RUN_RECORD_SCHEMA_VERSION,\n  type RunRecord,\n} from \"@mcmcjs/core\";\nimport type { FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { makeRequestDir } from \"./fit\";\nimport { driverPath, lastJsonLine, sha256, toStage } from \"./runner-common\";\n\nexport interface PredictIo {\n  /** Spawns the Julia process; injectable so runPredict is testable without Julia. */\n  spawn: FitRunner;\n  projectDir: string;\n  /** Where the posterior-predictive samples file is written. */\n  outPath: string;\n  /** The posterior samples file fed to prediction. */\n  samplesPath: string;\n  tmpDir?: string;\n}\n\n/** The prediction data: [data] with [predict].data overrides, target outcomes blanked to nulls. */\nexport function predictData(spec: ResolvedSpec): Record<string, unknown> {\n  const predict = spec.predict;\n  if (!predict) throw new Error(\"spec has no [predict] block\");\n  const data: Record<string, unknown> = { ...spec.data, ...(predict.data ?? {}) };\n  // Blank a target to null, preserving array shape so the driver maps it to a\n  // matching shape of `missing` (a multidimensional outcome stays nested).\n  const blank = (value: unknown): unknown => (Array.isArray(value) ? value.map(blank) : null);\n  for (const target of predict.targets) {\n    data[target] = blank(data[target]);\n  }\n  return data;\n}\n\n/** Draws posterior-predictive samples from a fitted model and its posterior samples file. */\nexport async function runPredict(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: PredictIo,\n): Promise<FitResult> {\n  const startedAt = new Date().toISOString();\n  const start = performance.now();\n  const runtimeRequested = spec.backend.version;\n  const data = predictData(spec);\n\n  const ownTmp = io.tmpDir === undefined;\n  const tmp = io.tmpDir ?? makeRequestDir(\"predict\");\n  const requestPath = join(tmp, \"request.json\");\n  writeFileSync(\n    requestPath,\n    JSON.stringify({\n      mode: \"predict\",\n      schema_version: spec.schema_version,\n      backend: { id: spec.backend.id },\n      model: { file: spec.modelPath, entry: spec.model.entry },\n      data,\n      predict: { targets: spec.predict?.targets ?? [] },\n      samples: io.samplesPath,\n      seed: spec.seed,\n      out: io.outPath,\n    }),\n  );\n\n  const args = [\n    ...resolved.args,\n    \"--startup-file=no\",\n    `--project=${io.projectDir}`,\n    driverPath(),\n    requestPath,\n  ];\n  let stdout: string;\n  let stderr: string;\n  let code: number;\n  try {\n    ({ stdout, stderr, code } = await io.spawn(resolved.command, args));\n  } finally {\n    if (ownTmp) rmSync(tmp, { recursive: true, force: true });\n  }\n  const elapsedMs = Math.round(performance.now() - start);\n\n  if (code !== 0 || !existsSync(io.outPath)) {\n    const failure = lastJsonLine(stderr);\n    const error =\n      (failure?.error as string) ??\n      stderr.trim().split(\"\\n\").pop() ??\n      `julia exited with code ${code}`;\n    return { status: \"error\", runtimeRequested, elapsedMs, stage: toStage(failure?.stage), error };\n  }\n\n  try {\n    parseSamples(readFileSync(io.outPath, \"utf8\"));\n  } catch (error) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: `samples file did not parse: ${(error as Error).message}`,\n    };\n  }\n\n  const provenance = lastJsonLine(stdout);\n  const julia = provenance?.julia_version as string | undefined;\n  const record: RunRecord = {\n    schema_version: RUN_RECORD_SCHEMA_VERSION,\n    spec_hash: spec.specHash,\n    seed: spec.seed,\n    backend: { id: spec.backend.id, runtime: spec.backend.runtime },\n    runtime: { requested: runtimeRequested, actual: julia, path: resolved.command },\n    manifest_sha256: provenance?.manifest_sha256 as string | undefined,\n    packages: provenance?.packages as Record<string, string> | undefined,\n    model_sha256: existsSync(spec.modelPath)\n      ? sha256(readFileSync(spec.modelPath, \"utf8\"))\n      : undefined,\n    data_sha256: sha256(canonicalJson(data)),\n    posterior_samples: io.samplesPath,\n    posterior_samples_sha256: existsSync(io.samplesPath)\n      ? sha256(readFileSync(io.samplesPath, \"utf8\"))\n      : undefined,\n    samples_file: io.outPath,\n    started_at: startedAt,\n    elapsed_ms: elapsedMs,\n  };\n  writeFileSync(`${io.outPath}.run.json`, `${JSON.stringify(record, null, 2)}\\n`);\n\n  return {\n    status: \"ok\",\n    samplesFile: io.outPath,\n    runtimeRequested,\n    runtimeActual: julia,\n    elapsedMs,\n  };\n}\n","import { copyFileSync, existsSync, mkdirSync, readFileSync, writeFileSync } from \"node:fs\";\nimport { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport { canonicalJson, DEFAULT_JULIA_CHANNEL } from \"@mcmcjs/core\";\nimport { type CommandRunner, createRunner } from \"@mcmcjs/engine\";\nimport { pinnedEnvDir, sha256 } from \"./runner-common\";\n\nconst PACKAGES = [\n  \"Turing\",\n  \"FlexiChains\",\n  \"DimensionalData\",\n  \"MCMCChains\",\n  \"JuliaBUGS\",\n  \"AdvancedHMC\",\n  \"ForwardDiff\",\n  \"Mooncake\",\n  \"ReverseDiff\",\n  \"JSON\",\n  \"StableRNGs\",\n  \"StatsFuns\",\n];\n\n/** Version pins for managed packages, by name (e.g. { Turing: \"0.45\" }). */\nexport type PackagePins = Record<string, string>;\n\n// Version strings are interpolated into Julia source for Pkg.add; this allows\n// only the characters of a Julia version specifier (digits, letters, and the\n// range operators) and notably excludes `$` and backticks, which would\n// otherwise let a shared spec run arbitrary Julia via string interpolation.\nconst VERSION_RE = /^[0-9A-Za-z.+~^=<>,\\s-]+$/;\n\n/** Rejects a version string that could break out of the generated Julia literal. */\nexport function validateVersionString(name: string, version: string): void {\n  if (!VERSION_RE.test(version)) {\n    throw new Error(\n      `invalid version \"${version}\" for package ${name}; a version may contain only digits, letters, and . + ~ ^ = < > , - and spaces`,\n    );\n  }\n}\n\n/** Rejects pins for unmanaged packages or with unsafe version strings. */\nexport function validatePins(pins: PackagePins | undefined): void {\n  for (const [name, version] of Object.entries(pins ?? {})) {\n    if (!PACKAGES.includes(name)) {\n      throw new Error(\n        `cannot pin unknown package \"${name}\"; managed packages are: ${PACKAGES.join(\", \")}`,\n      );\n    }\n    validateVersionString(name, version);\n  }\n}\n\nfunction hasPins(pins?: PackagePins): pins is PackagePins {\n  return pins !== undefined && Object.keys(pins).length > 0;\n}\n\n/**\n * The per-user directory holding a managed Julia project (Project + Manifest).\n * Keyed by the concrete Julia version AND any package pins, so each version\n * resolves its own compatible Manifest and each distinct set of pins gets its\n * own environment: a Manifest resolved by one Julia version (or package set)\n * can pin versions that fail to precompile under another. A missing version\n * and no pins falls back to the unversioned root.\n */\nexport function managedProjectDir(version?: string, pins?: PackagePins): string {\n  const base = process.env.XDG_DATA_HOME || join(homedir(), \".local\", \"share\");\n  const root = join(base, \"mcmcjs\", \"julia\", \"env\");\n  if (!version && !hasPins(pins)) return root;\n  let leaf = (version ?? \"default\").replace(/[^A-Za-z0-9._-]/g, \"_\");\n  if (hasPins(pins)) leaf += `-${sha256(canonicalJson(pins)).slice(0, 8)}`;\n  return join(root, leaf);\n}\n\n// Records what a managed dir was provisioned with (package set + pins), so an\n// env from an older set is healed (Pkg.add is additive) rather than left stale.\nfunction sentinelPath(dir: string): string {\n  return join(dir, \".mcmcjs-packages.json\");\n}\n\n// Bumped when the provisioning changes shape so existing envs re-provision; e.g.\n// generation 1 introduced instantiating the committed Manifest for the default,\n// which a pre-existing fresh-resolved env must pick up.\nconst PROVISION_GENERATION = 1;\n\nfunction expectedSentinel(pins?: PackagePins): string {\n  return canonicalJson({\n    gen: PROVISION_GENERATION,\n    packages: [...PACKAGES].sort(),\n    pins: pins ?? {},\n  });\n}\n\nfunction provisioned(dir: string, pins?: PackagePins): boolean {\n  try {\n    return readFileSync(sentinelPath(dir), \"utf8\").trim() === expectedSentinel(pins);\n  } catch {\n    return false;\n  }\n}\n\n/** Whether the managed project is present and provisioned with the current package set and pins. */\nexport function managedProjectReady(\n  dir: string = managedProjectDir(),\n  pins?: PackagePins,\n): boolean {\n  return existsSync(join(dir, \"Project.toml\")) && provisioned(dir, pins);\n}\n\n/** The `Pkg.add` argument: a PackageSpec per managed package, version-pinned where requested. */\nfunction packageSpecsCode(pins?: PackagePins): string {\n  const specs = PACKAGES.map((name) => {\n    const version = pins?.[name];\n    return version\n      ? `Pkg.PackageSpec(name=${JSON.stringify(name)}, version=${JSON.stringify(version)})`\n      : `Pkg.PackageSpec(name=${JSON.stringify(name)})`;\n  });\n  return `[${specs.join(\", \")}]`;\n}\n\n/**\n * Whether a provision should instantiate the shipped, resolved env (exact\n * committed package set) rather than resolving fresh: only the unpinned default\n * on the pinned Julia version, and only when the shipped env is present. Other\n * versions (a `--versions` matrix) and any package pins must resolve fresh,\n * since the committed Manifest was resolved for one specific Julia version.\n */\nfunction usesPinnedEnv(version: string | undefined, pins?: PackagePins): boolean {\n  return !hasPins(pins) && version === DEFAULT_JULIA_CHANNEL && existsSync(pinnedEnvDir());\n}\n\n/**\n * Ensures the managed Julia project exists with the inference packages installed\n * (version-pinned where `pins` requests). Idempotent: returns immediately when\n * already provisioned with the current set and pins. For the default env on the\n * pinned Julia version it instantiates the shipped, resolved Manifest (the exact\n * committed package set); otherwise it resolves and adds the packages fresh. The\n * first provision precompiles the project, which can take several minutes.\n */\nexport async function ensureProject(\n  juliaBin: string,\n  run: CommandRunner = createRunner(30 * 60_000),\n  dir: string = managedProjectDir(),\n  pins?: PackagePins,\n  opts?: { version?: string },\n): Promise<string> {\n  validatePins(pins);\n  if (managedProjectReady(dir, pins)) return dir;\n  mkdirSync(dir, { recursive: true });\n  if (usesPinnedEnv(opts?.version, pins)) {\n    copyFileSync(join(pinnedEnvDir(), \"Project.toml\"), join(dir, \"Project.toml\"));\n    copyFileSync(join(pinnedEnvDir(), \"Manifest.toml\"), join(dir, \"Manifest.toml\"));\n    await run(juliaBin, [\n      \"--startup-file=no\",\n      `--project=${dir}`,\n      \"-e\",\n      \"using Pkg; Pkg.instantiate(); Pkg.precompile()\",\n    ]);\n  } else {\n    const code = `using Pkg; Pkg.add(${packageSpecsCode(pins)}); Pkg.precompile()`;\n    await run(juliaBin, [\"--startup-file=no\", `--project=${dir}`, \"-e\", code]);\n  }\n  writeFileSync(sentinelPath(dir), expectedSentinel(pins));\n  return dir;\n}\n","import { join } from \"node:path\";\nimport type { ResolvedSpec } from \"@mcmcjs/core\";\nimport type { FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { runFit } from \"./fit\";\n\nexport interface MatrixEntry {\n  version: string;\n  status: \"ok\" | \"error\" | \"cancelled\";\n  samplesFile?: string;\n  runtimeActual?: string;\n  elapsedMs: number;\n  stage?: FitResult[\"stage\"];\n  error?: string;\n}\n\nexport interface MatrixResult {\n  entries: MatrixEntry[];\n  /** True only when every requested version ran and succeeded. */\n  ok: boolean;\n}\n\nexport interface ResolvedInvocation {\n  command: string;\n  args: string[];\n  version?: string;\n}\n\nexport interface MatrixIo {\n  spawn: FitRunner;\n  /** Directory the per-version samples files are written into. */\n  outDir: string;\n  /** Resolves a version/channel to a concrete invocation; injectable for tests. */\n  resolve: (version: string) => Promise<ResolvedInvocation>;\n  /** Provisions the managed env for a resolved version and returns its dir. */\n  ensure: (resolved: ResolvedInvocation) => Promise<string>;\n  /** Source path when the data came from a referenced file; recorded per version. */\n  dataFile?: string;\n  /** Overrides the recorded data hash (the data file's bytes hash). */\n  dataSha256?: string;\n  /** Continue after a version fails instead of stopping. */\n  keepGoing?: boolean;\n}\n\n/** Runs the same spec across several Julia versions, one samples file per version. */\nexport async function runMatrix(\n  spec: ResolvedSpec,\n  versions: string[],\n  io: MatrixIo,\n): Promise<MatrixResult> {\n  const entries: MatrixEntry[] = [];\n  for (const version of versions) {\n    let entry: MatrixEntry;\n    try {\n      const resolved = await io.resolve(version);\n      const projectDir = await io.ensure(resolved);\n      const versioned = { ...spec, backend: { ...spec.backend, version } };\n      const result = await runFit(versioned, resolved, {\n        spawn: io.spawn,\n        projectDir,\n        outPath: join(io.outDir, `${version}.samples.json`),\n        dataFile: io.dataFile,\n        dataSha256: io.dataSha256,\n      });\n      entry = {\n        version,\n        status: result.status,\n        samplesFile: result.samplesFile,\n        runtimeActual: result.runtimeActual,\n        elapsedMs: result.elapsedMs,\n        stage: result.stage,\n        error: result.error,\n      };\n    } catch (error) {\n      entry = { version, status: \"error\", elapsedMs: 0, error: (error as Error).message };\n    }\n    entries.push(entry);\n    // A cancelled run stops the whole matrix regardless of keepGoing.\n    if (entry.status === \"cancelled\") break;\n    if (entry.status === \"error\" && !io.keepGoing) break;\n  }\n  return {\n    entries,\n    ok: entries.length === versions.length && entries.every((e) => e.status === \"ok\"),\n  };\n}\n","import { DEFAULT_JULIA_CHANNEL } from \"@mcmcjs/core\";\nimport { type DoctorReport, runDoctor } from \"./doctor\";\nimport { type CommandRunner, createRunner, type ToolInfo } from \"./environment\";\n\n/** The official juliaup install script, piped to a shell by the install step. */\nconst JULIAUP_INSTALL_URL = \"https://install.julialang.org\";\n\n/** An executable and its arguments, run directly (no shell word-splitting). */\nexport interface InstallCommand {\n  command: string;\n  args: string[];\n}\n\n/**\n * The command that installs juliaup on the given platform, or null when\n * automatic install is not yet supported there.\n */\nexport function juliaupInstallCommand(platform: NodeJS.Platform): InstallCommand | null {\n  if (platform === \"win32\") {\n    // TODO: install juliaup on Windows via winget or the Microsoft Store.\n    return null;\n  }\n  // `--default-channel` makes the installer add the pinned Julia version (not\n  // just the latest \"release\") in the same step, so a clean machine lands on\n  // the exact version the committed Manifest was resolved for.\n  return {\n    command: \"sh\",\n    args: [\n      \"-c\",\n      `curl -fsSL ${JULIAUP_INSTALL_URL} | sh -s -- --yes --default-channel ${DEFAULT_JULIA_CHANNEL}`,\n    ],\n  };\n}\n\n/** A single provisioning step needed to make the toolchain ready. */\nexport interface SetupStep {\n  tool: \"juliaup\" | \"julia\";\n  /** A short description of what the step does. */\n  label: string;\n  /** The command to run, or null when the step cannot be performed automatically. */\n  command: InstallCommand | null;\n}\n\n/** The ordered steps needed to reach a ready toolchain, given the current state. */\nexport function planSetup(report: DoctorReport, platform: NodeJS.Platform): SetupStep[] {\n  // The pinned Julia is already the active default: nothing to do.\n  if (report.julia.found && report.julia.version === DEFAULT_JULIA_CHANNEL) return [];\n  if (report.juliaup.found) {\n    return [\n      {\n        tool: \"julia\",\n        label: `install the pinned Julia ${DEFAULT_JULIA_CHANNEL} via juliaup`,\n        command: {\n          command: report.juliaup.path ?? \"juliaup\",\n          args: [\"add\", DEFAULT_JULIA_CHANNEL],\n        },\n      },\n    ];\n  }\n  return [\n    {\n      tool: \"juliaup\",\n      label: `install juliaup with the pinned Julia ${DEFAULT_JULIA_CHANNEL}`,\n      command: juliaupInstallCommand(platform),\n    },\n  ];\n}\n\nexport type StepStatus = \"ran\" | \"skipped\" | \"failed\" | \"unsupported\";\n\nexport interface SetupStepResult extends SetupStep {\n  status: StepStatus;\n  /** Error detail when the step failed. */\n  detail?: string;\n}\n\nexport interface SetupResult {\n  juliaup: ToolInfo;\n  julia: ToolInfo;\n  /** True when Julia is available after setup. */\n  ready: boolean;\n  steps: SetupStepResult[];\n}\n\nexport interface SetupOptions {\n  /** Runs detection commands. Injectable for tests. */\n  runner?: CommandRunner;\n  /** Runs install steps, which may take several minutes. Injectable for tests. */\n  installer?: CommandRunner;\n  /** Target platform; defaults to the current process platform. */\n  platform?: NodeJS.Platform;\n  /** Plan the steps but do not run them. */\n  dryRun?: boolean;\n}\n\n/** Installs the Julia toolchain (juliaup and Julia) needed for inference. */\nexport async function runSetup(options: SetupOptions = {}): Promise<SetupResult> {\n  const {\n    runner,\n    installer = createRunner(15 * 60_000),\n    platform = process.platform,\n    dryRun = false,\n  } = options;\n\n  const before = await runDoctor(runner);\n  const plan = planSetup(before, platform);\n  // Nothing to install only when the pinned Julia is already the active\n  // default; a different installed Julia still triggers a pinned-version add.\n  if (plan.length === 0) return { ...before, steps: [] };\n\n  if (dryRun) {\n    return {\n      ...before,\n      steps: plan.map((step) => ({ ...step, status: step.command ? \"skipped\" : \"unsupported\" })),\n    };\n  }\n\n  const steps: SetupStepResult[] = [];\n  for (const step of plan) {\n    if (!step.command) {\n      steps.push({ ...step, status: \"unsupported\" });\n      continue;\n    }\n    try {\n      await installer(step.command.command, step.command.args);\n      steps.push({ ...step, status: \"ran\" });\n    } catch (error) {\n      const detail = error instanceof Error ? error.message : String(error);\n      steps.push({ ...step, status: \"failed\", detail });\n    }\n  }\n\n  const after = await runDoctor(runner);\n  return { juliaup: after.juliaup, julia: after.julia, ready: after.ready, steps };\n}\n","import type { CommandRunner, RuntimeVersion } from \"@mcmcjs/engine\";\n\ninterface ChannelInfo {\n  Name: string;\n  File: string;\n  Args?: string[];\n  Version?: string;\n  Arch?: string;\n}\n\ninterface Getconfig1 {\n  DefaultChannel: ChannelInfo | null;\n  OtherChannels: ChannelInfo[];\n}\n\nfunction parseChannel(value: unknown): ChannelInfo {\n  const c = value as Record<string, unknown>;\n  if (!c || typeof c.Name !== \"string\" || typeof c.File !== \"string\") {\n    throw new Error(\"unexpected `juliaup api getconfig1` channel shape\");\n  }\n  return {\n    Name: c.Name,\n    File: c.File,\n    Args: Array.isArray(c.Args) ? (c.Args as string[]) : undefined,\n    Version: typeof c.Version === \"string\" ? c.Version : undefined,\n    Arch: typeof c.Arch === \"string\" ? c.Arch : undefined,\n  };\n}\n\nfunction parseGetconfig1(raw: string): Getconfig1 {\n  let data: unknown;\n  try {\n    data = JSON.parse(raw);\n  } catch {\n    throw new Error(\"could not parse `juliaup api getconfig1` output as JSON\");\n  }\n  const obj = data as Record<string, unknown>;\n  if (!obj || typeof obj !== \"object\" || !Array.isArray(obj.OtherChannels)) {\n    throw new Error(\"unexpected `juliaup api getconfig1` output\");\n  }\n  return {\n    DefaultChannel: obj.DefaultChannel ? parseChannel(obj.DefaultChannel) : null,\n    OtherChannels: obj.OtherChannels.map(parseChannel),\n  };\n}\n\nfunction toVersion(channel: ChannelInfo, isDefault: boolean): RuntimeVersion {\n  return { id: channel.Name, version: channel.Version, path: channel.File || undefined, isDefault };\n}\n\n/** Lists the installed Julia versions, marking the default channel. */\nexport async function listVersions(bin: string, run: CommandRunner): Promise<RuntimeVersion[]> {\n  const config = parseGetconfig1(await run(bin, [\"api\", \"getconfig1\"]));\n  const versions: RuntimeVersion[] = [];\n  if (config.DefaultChannel) versions.push(toVersion(config.DefaultChannel, true));\n  for (const channel of config.OtherChannels) versions.push(toVersion(channel, false));\n  return versions;\n}\n\nexport async function addVersion(\n  bin: string,\n  channel: string,\n  opts: { default?: boolean },\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, [\"add\", channel]);\n  if (opts.default) await run(bin, [\"default\", channel]);\n}\n\nexport async function removeVersion(\n  bin: string,\n  channel: string,\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, [\"remove\", channel]);\n}\n\nexport async function setDefaultVersion(\n  bin: string,\n  channel: string,\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, [\"default\", channel]);\n}\n\nexport async function updateVersion(\n  bin: string,\n  channel: string | undefined,\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, channel ? [\"update\", channel] : [\"update\"]);\n}\n\nexport async function gcVersions(bin: string, run: CommandRunner): Promise<void> {\n  await run(bin, [\"gc\"]);\n}\n\n/** Resolves a channel to a concrete invocation, preferring its absolute binary path. */\nexport async function resolveVersion(\n  bin: string,\n  channel: string,\n  run: CommandRunner,\n): Promise<{ command: string; args: string[]; version?: string }> {\n  const config = parseGetconfig1(await run(bin, [\"api\", \"getconfig1\"]));\n  const all = config.DefaultChannel\n    ? [config.DefaultChannel, ...config.OtherChannels]\n    : config.OtherChannels;\n  const match = all.find((c) => c.Name === channel);\n  if (!match?.File) {\n    throw new Error(\n      `Julia version \"${channel}\" is not installed. Add it with: mcmc julia version add ${channel}`,\n    );\n  }\n  return { command: match.File, args: match.Args ?? [], version: match.Version };\n}\n\n/** Throws with an actionable message if any requested channel is not installed. */\nexport function assertVersionsInstalled(channels: string[], installed: RuntimeVersion[]): void {\n  const have = new Set(installed.map((v) => v.id));\n  const missing = channels.filter((c) => !have.has(c));\n  if (missing.length > 0) {\n    const fixes = missing.map((m) => `mcmc julia version add ${m}`).join(\"; \");\n    throw new Error(\n      `Julia version(s) not installed: ${missing.join(\", \")}. Install with: ${fixes}`,\n    );\n  }\n}\n","import { spawn } from \"node:child_process\";\nimport { mkdirSync, readdirSync, readFileSync, rmdirSync, rmSync, statSync } from \"node:fs\";\nimport { createConnection, type Socket } from \"node:net\";\nimport { join } from \"node:path\";\nimport type { ResolvedSpec } from \"@mcmcjs/core\";\nimport type { FitResult } from \"@mcmcjs/engine\";\nimport { parseDrawBatchLine, parseProgressLine } from \"@mcmcjs/engine\";\nimport { type FitIo, finalizeOkFit, fitRequest, runFit } from \"./fit\";\nimport { sha256, sharedTmpParent, toStage, workerPath } from \"./runner-common\";\n\nconst START_WAIT_MS = 180_000;\nconst CONNECT_TIMEOUT_MS = 1_000;\nconst STOP_ACK_TIMEOUT_MS = 3_000;\n\n/** Same 30-minute budget as the one-shot driver; MCMC_WORKER_TIMEOUT_MS overrides. */\nfunction fitInactivityTimeoutMs(): number {\n  const fromEnv = Number(process.env.MCMC_WORKER_TIMEOUT_MS);\n  return Number.isFinite(fromEnv) && fromEnv > 0 ? fromEnv : 30 * 60_000;\n}\n\n/** A hung worker is not retried; the fit is reported failed instead. */\nclass WorkerTimeoutError extends Error {}\n\n/** The caller aborted the fit; the worker is killed and the run ends cancelled. */\nclass FitCancelledError extends Error {}\n\n/** The pidfile a worker writes beside its socket so a fit can be killed cross-process. */\nfunction workerPidPath(socket: string): string {\n  return `${socket}.pid`;\n}\n\n/**\n * Force-kills the worker serving `socket` (by the pid it wrote beside the\n * socket) and clears the socket and pidfile, so the next fit cold-starts a\n * fresh worker. Used to stop a worker mid-fit, which the polite stop cannot do\n * while it is busy sampling.\n */\nexport function killWorker(socket: string): void {\n  const pidPath = workerPidPath(socket);\n  try {\n    const pid = Number(readFileSync(pidPath, \"utf8\").trim());\n    if (Number.isInteger(pid) && pid > 0) {\n      // The worker is a detached process-group leader, so signaling -pid takes\n      // down any precompile/child processes it spawned, not just the parent.\n      try {\n        process.kill(-pid, \"SIGKILL\");\n      } catch {\n        process.kill(pid, \"SIGKILL\");\n      }\n    }\n  } catch {}\n  rmSync(socket, { force: true });\n  rmSync(pidPath, { force: true });\n}\n\n/** Where worker sockets live; runtime dir when available, the shared tmp parent otherwise. */\nexport function workersDir(): string {\n  const runtime = process.env.XDG_RUNTIME_DIR;\n  const dir = runtime ? join(runtime, \"mcmcjs\") : join(sharedTmpParent(), \"workers\");\n  mkdirSync(dir, { recursive: true, mode: 0o700 });\n  return dir;\n}\n\n/** One worker per (Julia binary, project env) pair, named by a key hash. */\nexport function workerSocketPath(command: string, projectDir: string): string {\n  return join(workersDir(), `worker-${sha256(`${command}\\n${projectDir}`).slice(0, 12)}.sock`);\n}\n\nfunction connectOnce(path: string): Promise<Socket> {\n  return new Promise((resolve, reject) => {\n    const sock = createConnection(path);\n    const timer = setTimeout(() => {\n      sock.destroy();\n      reject(new Error(\"connect timeout\"));\n    }, CONNECT_TIMEOUT_MS);\n    sock.once(\"connect\", () => {\n      clearTimeout(timer);\n      resolve(sock);\n    });\n    sock.once(\"error\", (error) => {\n      clearTimeout(timer);\n      reject(error);\n    });\n  });\n}\n\nconst delay = (ms: number) => new Promise((resolve) => setTimeout(resolve, ms));\n\n/**\n * Serializes cold starts: only one invocation spawns a worker per socket path;\n * the rest poll the socket. A stale lock (a dead spawner) is taken over.\n */\nfunction acquireStartLock(socketPath: string): boolean {\n  const lock = `${socketPath}.start`;\n  try {\n    mkdirSync(lock);\n    return true;\n  } catch {\n    try {\n      if (Date.now() - statSync(lock).mtimeMs > START_WAIT_MS) {\n        rmdirSync(lock);\n        mkdirSync(lock);\n        return true;\n      }\n    } catch {}\n    return false;\n  }\n}\n\nfunction releaseStartLock(socketPath: string): void {\n  try {\n    rmdirSync(`${socketPath}.start`);\n  } catch {}\n}\n\n/** Connects to the keyed worker, starting one (detached) if none answers. */\nexport async function ensureWorker(\n  resolved: { command: string; args: string[] },\n  projectDir: string,\n  notify?: (line: string) => void,\n  signal?: AbortSignal,\n): Promise<Socket> {\n  const path = workerSocketPath(resolved.command, projectDir);\n  try {\n    return await connectOnce(path);\n  } catch {}\n  // Honor a cancel that arrived during the (possibly slow) cold start; the\n  // detached worker keeps loading and stays warm for the next fit.\n  if (signal?.aborted) throw new FitCancelledError();\n\n  let spawnFailure: Error | undefined;\n  const startedHere = acquireStartLock(path);\n  if (startedHere) {\n    try {\n      rmSync(path, { force: true });\n      notify?.(\"starting the Julia worker (first use loads Turing, can take a minute)...\");\n      const child = spawn(\n        resolved.command,\n        [...resolved.args, \"--startup-file=no\", `--project=${projectDir}`, workerPath(), path],\n        { detached: true, stdio: \"ignore\" },\n      );\n      child.on(\"error\", (error) => {\n        spawnFailure = error;\n      });\n      child.on(\"exit\", (code) => {\n        if (code !== 0 && code !== null) {\n          spawnFailure = new Error(`the worker exited with code ${code} before serving`);\n        }\n      });\n      child.unref();\n    } catch (error) {\n      releaseStartLock(path);\n      throw error;\n    }\n  }\n\n  try {\n    const deadline = Date.now() + START_WAIT_MS;\n    for (;;) {\n      if (signal?.aborted) throw new FitCancelledError();\n      if (spawnFailure) throw spawnFailure;\n      try {\n        return await connectOnce(path);\n      } catch {}\n      if (Date.now() > deadline) throw new Error(\"the Julia worker did not start in time\");\n      await delay(250);\n    }\n  } finally {\n    if (startedHere) releaseStartLock(path);\n  }\n}\n\n/**\n * Streams progress lines to onProgress and resolves with the final result\n * line. The inactivity deadline (reset by every byte the worker sends, so\n * healthy long fits survive on their progress stream) rejects with\n * WorkerTimeoutError rather than hanging forever on a wedged worker.\n */\nfunction readWorkerResponse(\n  sock: Socket,\n  onProgress?: FitIo[\"onProgress\"],\n  onDraws?: FitIo[\"onDraws\"],\n  signal?: AbortSignal,\n  inactivityMs = fitInactivityTimeoutMs(),\n): Promise<Record<string, unknown>> {\n  return new Promise((resolve, reject) => {\n    let pending = \"\";\n    let settled = false;\n    const onAbort = () => {\n      settle(() => {\n        sock.destroy();\n        reject(new FitCancelledError());\n      });\n    };\n    const settle = (fn: () => void) => {\n      if (settled) return;\n      settled = true;\n      sock.setTimeout(0);\n      signal?.removeEventListener(\"abort\", onAbort);\n      fn();\n    };\n    if (signal) {\n      if (signal.aborted) onAbort();\n      else signal.addEventListener(\"abort\", onAbort, { once: true });\n    }\n    sock.setTimeout(inactivityMs, () => {\n      const error = new WorkerTimeoutError(\n        `the worker sent nothing for ${Math.round(inactivityMs / 60_000)} minutes`,\n      );\n      settle(() => {\n        sock.destroy();\n        reject(error);\n      });\n    });\n    sock.on(\"data\", (chunk: Buffer) => {\n      pending += chunk.toString(\"utf8\");\n      for (;;) {\n        const at = pending.indexOf(\"\\n\");\n        if (at === -1) break;\n        const line = pending.slice(0, at).trim();\n        pending = pending.slice(at + 1);\n        if (!line) continue;\n        const progress = parseProgressLine(line);\n        if (progress) {\n          onProgress?.(progress);\n          continue;\n        }\n        const batch = parseDrawBatchLine(line);\n        if (batch) {\n          onDraws?.(batch);\n          continue;\n        }\n        try {\n          const doc = JSON.parse(line) as Record<string, unknown>;\n          settle(() => {\n            sock.end();\n            resolve(doc);\n          });\n          return;\n        } catch {}\n      }\n    });\n    sock.on(\"error\", (error) => settle(() => reject(error)));\n    sock.on(\"close\", () => settle(() => reject(new Error(\"worker closed the connection\"))));\n  });\n}\n\n/** Runs one fit through the persistent worker. Throws on worker-infrastructure failure. */\nexport async function runFitViaWorker(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: FitIo & { notify?: (line: string) => void },\n): Promise<FitResult> {\n  const startedAt = new Date().toISOString();\n  const start = performance.now();\n  if (io.signal?.aborted) {\n    return { status: \"cancelled\", runtimeRequested: spec.backend.version, elapsedMs: 0 };\n  }\n  let sock: Socket;\n  try {\n    sock = await ensureWorker(resolved, io.projectDir, io.notify, io.signal);\n  } catch (error) {\n    // Cancelled during the cold start: the worker (if any) is still idle and\n    // stays warm; no fit was dispatched, so just report cancelled.\n    if (error instanceof FitCancelledError) {\n      return {\n        status: \"cancelled\",\n        runtimeRequested: spec.backend.version,\n        elapsedMs: Math.round(performance.now() - start),\n      };\n    }\n    throw error;\n  }\n  if (io.signal?.aborted) {\n    // Aborted in the gap before dispatch; drop the connection, leave the worker\n    // idle and warm. The worker reads an empty line and loops back to accept.\n    sock.destroy();\n    return {\n      status: \"cancelled\",\n      runtimeRequested: spec.backend.version,\n      elapsedMs: Math.round(performance.now() - start),\n    };\n  }\n  sock.write(\n    `${JSON.stringify(fitRequest(spec, io.outPath, { streamDraws: io.onDraws !== undefined, drawBatchSize: io.drawBatchSize }))}\\n`,\n  );\n  let final: Record<string, unknown>;\n  try {\n    final = await readWorkerResponse(sock, io.onProgress, io.onDraws, io.signal);\n  } catch (error) {\n    if (error instanceof FitCancelledError) {\n      // The worker is mid-sample and cannot answer a polite stop; kill it so it\n      // stops promptly and the next fit cold-starts a fresh one.\n      killWorker(workerSocketPath(resolved.command, io.projectDir));\n      return {\n        status: \"cancelled\",\n        runtimeRequested: spec.backend.version,\n        elapsedMs: Math.round(performance.now() - start),\n      };\n    }\n    throw error;\n  }\n  const elapsedMs = Math.round(performance.now() - start);\n\n  if (final.ok !== true) {\n    // \"worker\" is the worker's own protocol failure, not a model failure;\n    // throwing hands the fit to the one-shot driver.\n    if (final.stage === \"worker\") throw new Error(String(final.error ?? \"worker error\"));\n    return {\n      status: \"error\",\n      runtimeRequested: spec.backend.version,\n      elapsedMs,\n      stage: toStage(final.stage),\n      error: String(final.error ?? \"worker error\"),\n    };\n  }\n  return finalizeOkFit(\n    spec,\n    resolved,\n    io,\n    final.provenance as Record<string, unknown> | undefined,\n    startedAt,\n    elapsedMs,\n  );\n}\n\n/**\n * Runs a fit through the worker when asked (and possible), falling back to the\n * one-shot driver on worker-infrastructure failures. Two exceptions never fall\n * back: a fit that genuinely failed (model error) is returned, and a hung\n * worker (timeout) is reported rather than silently re-run for another\n * half hour.\n */\nexport async function runFitAuto(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: FitIo & { daemon?: boolean; notify?: (line: string) => void },\n): Promise<FitResult> {\n  if (io.signal?.aborted) {\n    return { status: \"cancelled\", runtimeRequested: spec.backend.version, elapsedMs: 0 };\n  }\n  // Distributed sampling spawns worker processes and includes the model into\n  // Main; the persistent worker's isolation cannot host that, so it runs one-shot.\n  if (io.daemon && process.platform !== \"win32\" && spec.sampler.parallel !== \"distributed\") {\n    const start = performance.now();\n    try {\n      return await runFitViaWorker(spec, resolved, io);\n    } catch (error) {\n      if (error instanceof WorkerTimeoutError) {\n        return {\n          status: \"error\",\n          runtimeRequested: spec.backend.version,\n          elapsedMs: Math.round(performance.now() - start),\n          stage: \"worker\",\n          error: `${error.message}; the worker may be wedged, try mcmc daemon stop`,\n        };\n      }\n      io.notify?.(\n        `worker unavailable (${(error as Error).message}); falling back to a one-shot run`,\n      );\n    }\n  }\n  return runFit(spec, resolved, io);\n}\n\nexport interface WorkerStatus {\n  socket: string;\n  alive: boolean;\n}\n\n/** Lists known worker sockets and whether each answers. */\nexport async function listWorkers(): Promise<WorkerStatus[]> {\n  const dir = workersDir();\n  const sockets = readdirSync(dir).filter((f) => f.startsWith(\"worker-\") && f.endsWith(\".sock\"));\n  const statuses: WorkerStatus[] = [];\n  for (const name of sockets) {\n    const socket = join(dir, name);\n    let alive = false;\n    try {\n      const sock = await connectOnce(socket);\n      sock.destroy();\n      alive = true;\n    } catch {}\n    statuses.push({ socket, alive });\n  }\n  return statuses;\n}\n\nexport type StopOutcome = \"stopped\" | \"stale\" | \"pending\";\n\n/**\n * Asks one worker to shut down. \"stopped\": acknowledged and gone. \"stale\": the\n * socket was dead and its file was removed. \"pending\": the worker is busy with\n * a fit; the stop request is queued and honored when the fit finishes, so the\n * live socket file is left alone.\n */\nexport async function stopWorker(socket: string): Promise<StopOutcome> {\n  let sock: Socket;\n  try {\n    sock = await connectOnce(socket);\n  } catch {\n    rmSync(socket, { force: true });\n    return \"stale\";\n  }\n  const acked = await new Promise<boolean>((resolve) => {\n    const timer = setTimeout(() => resolve(false), STOP_ACK_TIMEOUT_MS);\n    const finish = (ok: boolean) => {\n      clearTimeout(timer);\n      resolve(ok);\n    };\n    // Without a flowing readable side the worker's FIN is never surfaced.\n    sock.resume();\n    sock.on(\"close\", () => finish(true));\n    sock.on(\"error\", () => finish(false));\n    sock.write('{\"mcmcjs\":\"stop\"}\\n');\n  });\n  sock.destroy();\n  if (!acked) return \"pending\";\n  rmSync(socket, { force: true });\n  return 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package/dist/index.js

@@ -202,6 +202,7 @@ async function runFit(spec, resolved, io) {
   const args = [
     ...resolved.args,
     "--startup-file=no",
+    ...spec.sampler.parallel === "threads" ? ["--threads=auto"] : [],
     `--project=${io.projectDir}`,
     driverPath(),
     requestPath
@@ -979,7 +980,7 @@ async function runFitAuto(spec, resolved, io) {
   if (io.signal?.aborted) {
     return { status: "cancelled", runtimeRequested: spec.backend.version, elapsedMs: 0 };
   }
-  if (io.daemon && process.platform !== "win32") {
+  if (io.daemon && process.platform !== "win32" && spec.sampler.parallel !== "distributed") {
     const start = performance.now();
     try {
       return await runFitViaWorker(spec, resolved, io);

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../src/environment.ts","../src/doctor.ts","../src/engine.ts","../src/fit.ts","../src/runner-common.ts","../src/loglik.ts","../src/predict.ts","../src/project.ts","../src/run-matrix.ts","../src/setup.ts","../src/versions.ts","../src/worker.ts"],"sourcesContent":["import { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport { type CommandRunner, createRunner, type ToolInfo } from \"@mcmcjs/engine\";\n\nexport type { CommandRunner, ToolInfo } from \"@mcmcjs/engine\";\nexport { createRunner } from \"@mcmcjs/engine\";\n\nconst defaultRunner = createRunner();\n\n// juliaup installs its shims under the home directory; we also fall back to\n// whatever is on PATH. $HOME is honored first so a sandbox that redirects HOME\n// (mcmc sandbox --strict) finds its own juliaup, not the user's.\nfunction candidates(binary: string): string[] {\n  const home = process.env.HOME || homedir();\n  return [join(home, \".juliaup\", \"bin\", binary), binary];\n}\n\nasync function detect(\n  binary: string,\n  parseVersion: (stdout: string) => string | undefined,\n  runner: CommandRunner,\n): Promise<ToolInfo> {\n  for (const path of candidates(binary)) {\n    try {\n      const version = parseVersion(await runner(path, [\"--version\"]));\n      if (version) return { found: true, version, path };\n    } catch {\n      // not available at this path; try the next candidate\n    }\n  }\n  return { found: false };\n}\n\nconst versionNumber = (stdout: string): string | undefined => stdout.match(/(\\d+\\.\\d+\\.\\d+)/)?.[1];\n\n/** Detects the Julia runtime via `julia --version`. */\nexport function detectJulia(runner: CommandRunner = defaultRunner): Promise<ToolInfo> {\n  return detect(\"julia\", versionNumber, runner);\n}\n\n/** Detects the juliaup version manager via `juliaup --version`. */\nexport function detectJuliaup(runner: CommandRunner = defaultRunner): Promise<ToolInfo> {\n  return detect(\"juliaup\", versionNumber, runner);\n}\n","import { type CommandRunner, detectJulia, detectJuliaup, type ToolInfo } from \"./environment\";\n\n/** A summary of the Julia toolchain available for inference. */\nexport interface DoctorReport {\n  juliaup: ToolInfo;\n  julia: ToolInfo;\n  /** True when Julia itself is available (the minimum needed to run inference). */\n  ready: boolean;\n}\n\n/** Detects the installed Julia toolchain and reports whether inference can run. */\nexport async function runDoctor(runner?: CommandRunner): Promise<DoctorReport> {\n  const [juliaup, julia] = await Promise.all([detectJuliaup(runner), detectJulia(runner)]);\n  return { juliaup, julia, ready: julia.found };\n}\n","import type { Engine, EngineContext, HealthReport } from \"@mcmcjs/engine\";\nimport { runDoctor } from \"./doctor\";\n\nconst JULIAUP_URL = \"https://github.com/JuliaLang/juliaup\";\n\nexport const juliaEngine: Engine = {\n  id: \"julia\",\n  displayName: \"Julia\",\n  capabilities: { setup: true, versions: true, fit: true, predict: true },\n  async doctor(ctx: EngineContext): Promise<HealthReport> {\n    const report = await runDoctor(ctx.run);\n    return {\n      engineId: \"julia\",\n      ready: report.ready,\n      tools: [\n        { name: \"juliaup\", ...report.juliaup },\n        { name: \"julia\", ...report.julia },\n      ],\n      hint: report.ready\n        ? undefined\n        : `Julia not found. Install it with juliaup (${JULIAUP_URL}), or run \\`mcmc setup\\`.`,\n    };\n  },\n};\n","import { existsSync, mkdirSync, mkdtempSync, readFileSync, rmSync, writeFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport {\n  canonicalJson,\n  parseSamples,\n  type ResolvedSpec,\n  RUN_RECORD_SCHEMA_VERSION,\n  type RunRecord,\n} from \"@mcmcjs/core\";\nimport type { DrawBatch, FitProgress, FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { driverPath, lastJsonLine, sha256, sharedTmpParent, toStage } from \"./runner-common\";\n\nexport interface FitIo {\n  /** Spawns the Julia process; injectable so runFit is testable without Julia. */\n  spawn: FitRunner;\n  /** The managed Julia project directory passed as --project. */\n  projectDir: string;\n  /** Where the samples file is written. */\n  outPath: string;\n  /** Where the run record is written; defaults to `<outPath>.run.json`. */\n  recordPath?: string;\n  /** Streamed per-chain sampling progress. */\n  onProgress?: (progress: FitProgress) => void;\n  /** Streamed draw batches as sampling proceeds. */\n  onDraws?: (batch: DrawBatch) => void;\n  /** Raw console lines from the sampler as they arrive (structured progress/draws\n   * lines are filtered out), for surfacing solver logs live. */\n  onLog?: (line: string, stream: \"stdout\" | \"stderr\") => void;\n  /** Draws per streamed batch (driver default 25); lower it when models have many leaves. */\n  drawBatchSize?: number;\n  /** Aborts an in-progress fit; the run then ends with a \"cancelled\" status. */\n  signal?: AbortSignal;\n  /** Source path when the data came from a referenced file; recorded, not copied. */\n  dataFile?: string;\n  /** Overrides the recorded data hash (e.g. the data file's bytes hash). */\n  dataSha256?: string;\n  tmpDir?: string;\n}\n\n/** A fresh request dir under the shared per-user tmp parent. */\nexport function makeRequestDir(kind: string): string {\n  const parent = sharedTmpParent();\n  mkdirSync(parent, { recursive: true });\n  return mkdtempSync(join(parent, `${kind}-`));\n}\n\n/** The driver/worker request object for one fit. */\nexport function fitRequest(\n  spec: ResolvedSpec,\n  outPath: string,\n  opts?: { streamDraws?: boolean; drawBatchSize?: number },\n): Record<string, unknown> {\n  return {\n    schema_version: spec.schema_version,\n    backend: { id: spec.backend.id },\n    model: { file: spec.modelPath, entry: spec.model.entry },\n    data: spec.data,\n    sampler: spec.sampler,\n    seed: spec.seed,\n    out: outPath,\n    ...(opts?.streamDraws ? { stream_draws: true } : {}),\n    ...(opts?.drawBatchSize ? { draw_batch_size: opts.drawBatchSize } : {}),\n  };\n}\n\n/**\n * Validates the written samples and records provenance; the success tail\n * shared by the one-shot driver and the worker paths.\n */\nexport function finalizeOkFit(\n  spec: ResolvedSpec,\n  resolved: { command: string },\n  io: Pick<FitIo, \"outPath\" | \"recordPath\" | \"dataFile\" | \"dataSha256\">,\n  provenance: Record<string, unknown> | undefined,\n  startedAt: string,\n  elapsedMs: number,\n): FitResult {\n  const runtimeRequested = spec.backend.version;\n  if (!existsSync(io.outPath)) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: \"the runtime reported success but wrote no samples file\",\n    };\n  }\n  try {\n    parseSamples(readFileSync(io.outPath, \"utf8\"));\n  } catch (error) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: `samples file did not parse: ${(error as Error).message}`,\n    };\n  }\n\n  const julia = provenance?.julia_version as string | undefined;\n  const record: RunRecord = {\n    schema_version: RUN_RECORD_SCHEMA_VERSION,\n    spec_hash: spec.specHash,\n    seed: spec.seed,\n    backend: { id: spec.backend.id, runtime: spec.backend.runtime },\n    runtime: { requested: runtimeRequested, actual: julia, path: resolved.command },\n    manifest_sha256: provenance?.manifest_sha256 as string | undefined,\n    packages: provenance?.packages as Record<string, string> | undefined,\n    model_sha256: existsSync(spec.modelPath)\n      ? sha256(readFileSync(spec.modelPath, \"utf8\"))\n      : undefined,\n    data_sha256: io.dataSha256 ?? sha256(canonicalJson(spec.data)),\n    ...(io.dataFile ? { data_file: io.dataFile } : {}),\n    samples_file: io.outPath,\n    started_at: startedAt,\n    elapsed_ms: elapsedMs,\n  };\n  writeFileSync(io.recordPath ?? `${io.outPath}.run.json`, `${JSON.stringify(record, null, 2)}\\n`);\n\n  return {\n    status: \"ok\",\n    samplesFile: io.outPath,\n    runtimeRequested,\n    runtimeActual: julia,\n    elapsedMs,\n  };\n}\n\n/** Runs one inference for a resolved spec on a resolved runtime invocation. */\nexport async function runFit(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: FitIo,\n): Promise<FitResult> {\n  const startedAt = new Date().toISOString();\n  const start = performance.now();\n  const runtimeRequested = spec.backend.version;\n\n  if (io.signal?.aborted) {\n    return { status: \"cancelled\", runtimeRequested, elapsedMs: 0 };\n  }\n\n  const ownTmp = io.tmpDir === undefined;\n  const tmp = io.tmpDir ?? makeRequestDir(\"fit\");\n  const requestPath = join(tmp, \"request.json\");\n  writeFileSync(\n    requestPath,\n    JSON.stringify(\n      fitRequest(spec, io.outPath, {\n        streamDraws: io.onDraws !== undefined,\n        drawBatchSize: io.drawBatchSize,\n      }),\n    ),\n  );\n\n  const args = [\n    ...resolved.args,\n    \"--startup-file=no\",\n    `--project=${io.projectDir}`,\n    driverPath(),\n    requestPath,\n  ];\n  let stdout: string;\n  let stderr: string;\n  let code: number;\n  let cancelled: boolean | undefined;\n  try {\n    ({ stdout, stderr, code, cancelled } = await io.spawn(resolved.command, args, {\n      onProgress: io.onProgress,\n      onDraws: io.onDraws,\n      onLog: io.onLog,\n      signal: io.signal,\n    }));\n  } finally {\n    if (ownTmp) rmSync(tmp, { recursive: true, force: true });\n  }\n  const elapsedMs = Math.round(performance.now() - start);\n\n  if (cancelled) {\n    return { status: \"cancelled\", runtimeRequested, elapsedMs };\n  }\n\n  if (code !== 0 || !existsSync(io.outPath)) {\n    const failure = lastJsonLine(stderr);\n    const stage = toStage(failure?.stage);\n    const error =\n      (failure?.error as string) ??\n      stderr.trim().split(\"\\n\").pop() ??\n      `julia exited with code ${code}`;\n    return { status: \"error\", runtimeRequested, elapsedMs, stage, error };\n  }\n\n  return finalizeOkFit(spec, resolved, io, lastJsonLine(stdout), startedAt, elapsedMs);\n}\n","import { createHash } from \"node:crypto\";\nimport { existsSync } from \"node:fs\";\nimport { tmpdir } from \"node:os\";\nimport { dirname, join } from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\nimport type { FitResult } from \"@mcmcjs/engine\";\n\n/**\n * The per-user parent for all mcmcjs temp state. The uid suffix keeps users\n * on a shared /tmp out of each other's way (macOS tmpdir is per-user already,\n * Linux /tmp is not).\n */\nexport function sharedTmpParent(): string {\n  const uid = typeof process.getuid === \"function\" ? `-${process.getuid()}` : \"\";\n  return join(tmpdir(), `mcmcjs${uid}`);\n}\n\n// The driver scripts sit next to the bundle in the published dist/ (tsup copies\n// them there), but under src/driver/ when running from source (tests, tsx). Try\n// the bundle layout first, fall back to the source layout.\nfunction driverFile(name: string): string {\n  const here = dirname(fileURLToPath(import.meta.url));\n  const beside = join(here, name);\n  return existsSync(beside) ? beside : join(here, \"driver\", name);\n}\n\n/** Path to the shipped Julia driver. */\nexport function driverPath(): string {\n  return driverFile(\"driver.jl\");\n}\n\n/** Path to the shipped persistent worker. */\nexport function workerPath(): string {\n  return driverFile(\"worker.jl\");\n}\n\n/**\n * Directory holding the shipped, resolved Julia env (Project.toml + Manifest.toml),\n * next to this module in dist/. A fresh default provision instantiates this exact\n * package set rather than re-resolving the latest compatible versions.\n */\nexport function pinnedEnvDir(): string {\n  return join(dirname(fileURLToPath(import.meta.url)), \"julia-env\");\n}\n\nexport function sha256(text: string): string {\n  return createHash(\"sha256\").update(text).digest(\"hex\");\n}\n\n/** Parses the last JSON-object line of text (the driver's provenance or error line). */\nexport function lastJsonLine(text: string): Record<string, unknown> | undefined {\n  for (const line of text.trimEnd().split(\"\\n\").reverse()) {\n    const trimmed = line.trim();\n    if (!trimmed.startsWith(\"{\")) continue;\n    try {\n      return JSON.parse(trimmed) as Record<string, unknown>;\n    } catch {\n      return undefined;\n    }\n  }\n  return undefined;\n}\n\nconst STAGES = new Set<NonNullable<FitResult[\"stage\"]>>([\n  \"compile\",\n  \"sample\",\n  \"load_samples\",\n  \"predict\",\n  \"write\",\n  \"spawn\",\n  \"worker\",\n]);\n\n/** Narrows a driver-reported stage string to the known set. */\nexport function toStage(value: unknown): FitResult[\"stage\"] {\n  return typeof value === \"string\" && STAGES.has(value as NonNullable<FitResult[\"stage\"]>)\n    ? (value as FitResult[\"stage\"])\n    : undefined;\n}\n","import { existsSync, readFileSync, rmSync, writeFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport {\n  canonicalJson,\n  parseSamples,\n  type ResolvedSpec,\n  RUN_RECORD_SCHEMA_VERSION,\n  type RunRecord,\n} from \"@mcmcjs/core\";\nimport type { FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { makeRequestDir } from \"./fit\";\nimport { driverPath, lastJsonLine, sha256, toStage } from \"./runner-common\";\n\nexport interface LogLikIo {\n  /** Spawns the Julia process; injectable so runLogLik is testable without Julia. */\n  spawn: FitRunner;\n  projectDir: string;\n  /** Where the pointwise log-likelihood file is written (samples wire, one column per observation). */\n  outPath: string;\n  /** The posterior samples file the log-likelihood is evaluated at. */\n  samplesPath: string;\n  tmpDir?: string;\n}\n\n/**\n * Computes the pointwise log-likelihood of the observed data at each posterior\n * draw: one column per observation, in the same wire format as a samples file.\n * This is the input LOO/WAIC model comparison needs.\n */\nexport async function runLogLik(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: LogLikIo,\n): Promise<FitResult> {\n  const startedAt = new Date().toISOString();\n  const start = performance.now();\n  const runtimeRequested = spec.backend.version;\n\n  const ownTmp = io.tmpDir === undefined;\n  const tmp = io.tmpDir ?? makeRequestDir(\"loglik\");\n  const requestPath = join(tmp, \"request.json\");\n  writeFileSync(\n    requestPath,\n    JSON.stringify({\n      mode: \"loglik\",\n      schema_version: spec.schema_version,\n      backend: { id: spec.backend.id },\n      model: { file: spec.modelPath, entry: spec.model.entry },\n      data: spec.data,\n      samples: io.samplesPath,\n      seed: spec.seed,\n      out: io.outPath,\n    }),\n  );\n\n  const args = [\n    ...resolved.args,\n    \"--startup-file=no\",\n    `--project=${io.projectDir}`,\n    driverPath(),\n    requestPath,\n  ];\n  let stdout: string;\n  let stderr: string;\n  let code: number;\n  try {\n    ({ stdout, stderr, code } = await io.spawn(resolved.command, args));\n  } finally {\n    if (ownTmp) rmSync(tmp, { recursive: true, force: true });\n  }\n  const elapsedMs = Math.round(performance.now() - start);\n\n  if (code !== 0 || !existsSync(io.outPath)) {\n    const failure = lastJsonLine(stderr);\n    const error =\n      (failure?.error as string) ??\n      stderr.trim().split(\"\\n\").pop() ??\n      `julia exited with code ${code}`;\n    return { status: \"error\", runtimeRequested, elapsedMs, stage: toStage(failure?.stage), error };\n  }\n\n  try {\n    parseSamples(readFileSync(io.outPath, \"utf8\"));\n  } catch (error) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: `log-likelihood file did not parse: ${(error as Error).message}`,\n    };\n  }\n\n  const provenance = lastJsonLine(stdout);\n  const julia = provenance?.julia_version as string | undefined;\n  const record: RunRecord = {\n    schema_version: RUN_RECORD_SCHEMA_VERSION,\n    spec_hash: spec.specHash,\n    seed: spec.seed,\n    backend: { id: spec.backend.id, runtime: spec.backend.runtime },\n    runtime: { requested: runtimeRequested, actual: julia, path: resolved.command },\n    manifest_sha256: provenance?.manifest_sha256 as string | undefined,\n    packages: provenance?.packages as Record<string, string> | undefined,\n    model_sha256: existsSync(spec.modelPath)\n      ? sha256(readFileSync(spec.modelPath, \"utf8\"))\n      : undefined,\n    data_sha256: sha256(canonicalJson(spec.data)),\n    posterior_samples: io.samplesPath,\n    posterior_samples_sha256: existsSync(io.samplesPath)\n      ? sha256(readFileSync(io.samplesPath, \"utf8\"))\n      : undefined,\n    samples_file: io.outPath,\n    started_at: startedAt,\n    elapsed_ms: elapsedMs,\n  };\n  writeFileSync(`${io.outPath}.run.json`, `${JSON.stringify(record, null, 2)}\\n`);\n\n  return {\n    status: \"ok\",\n    samplesFile: io.outPath,\n    runtimeRequested,\n    runtimeActual: julia,\n    elapsedMs,\n  };\n}\n","import { existsSync, readFileSync, rmSync, writeFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport {\n  canonicalJson,\n  parseSamples,\n  type ResolvedSpec,\n  RUN_RECORD_SCHEMA_VERSION,\n  type RunRecord,\n} from \"@mcmcjs/core\";\nimport type { FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { makeRequestDir } from \"./fit\";\nimport { driverPath, lastJsonLine, sha256, toStage } from \"./runner-common\";\n\nexport interface PredictIo {\n  /** Spawns the Julia process; injectable so runPredict is testable without Julia. */\n  spawn: FitRunner;\n  projectDir: string;\n  /** Where the posterior-predictive samples file is written. */\n  outPath: string;\n  /** The posterior samples file fed to prediction. */\n  samplesPath: string;\n  tmpDir?: string;\n}\n\n/** The prediction data: [data] with [predict].data overrides, target outcomes blanked to nulls. */\nexport function predictData(spec: ResolvedSpec): Record<string, unknown> {\n  const predict = spec.predict;\n  if (!predict) throw new Error(\"spec has no [predict] block\");\n  const data: Record<string, unknown> = { ...spec.data, ...(predict.data ?? {}) };\n  // Blank a target to null, preserving array shape so the driver maps it to a\n  // matching shape of `missing` (a multidimensional outcome stays nested).\n  const blank = (value: unknown): unknown => (Array.isArray(value) ? value.map(blank) : null);\n  for (const target of predict.targets) {\n    data[target] = blank(data[target]);\n  }\n  return data;\n}\n\n/** Draws posterior-predictive samples from a fitted model and its posterior samples file. */\nexport async function runPredict(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: PredictIo,\n): Promise<FitResult> {\n  const startedAt = new Date().toISOString();\n  const start = performance.now();\n  const runtimeRequested = spec.backend.version;\n  const data = predictData(spec);\n\n  const ownTmp = io.tmpDir === undefined;\n  const tmp = io.tmpDir ?? makeRequestDir(\"predict\");\n  const requestPath = join(tmp, \"request.json\");\n  writeFileSync(\n    requestPath,\n    JSON.stringify({\n      mode: \"predict\",\n      schema_version: spec.schema_version,\n      backend: { id: spec.backend.id },\n      model: { file: spec.modelPath, entry: spec.model.entry },\n      data,\n      predict: { targets: spec.predict?.targets ?? [] },\n      samples: io.samplesPath,\n      seed: spec.seed,\n      out: io.outPath,\n    }),\n  );\n\n  const args = [\n    ...resolved.args,\n    \"--startup-file=no\",\n    `--project=${io.projectDir}`,\n    driverPath(),\n    requestPath,\n  ];\n  let stdout: string;\n  let stderr: string;\n  let code: number;\n  try {\n    ({ stdout, stderr, code } = await io.spawn(resolved.command, args));\n  } finally {\n    if (ownTmp) rmSync(tmp, { recursive: true, force: true });\n  }\n  const elapsedMs = Math.round(performance.now() - start);\n\n  if (code !== 0 || !existsSync(io.outPath)) {\n    const failure = lastJsonLine(stderr);\n    const error =\n      (failure?.error as string) ??\n      stderr.trim().split(\"\\n\").pop() ??\n      `julia exited with code ${code}`;\n    return { status: \"error\", runtimeRequested, elapsedMs, stage: toStage(failure?.stage), error };\n  }\n\n  try {\n    parseSamples(readFileSync(io.outPath, \"utf8\"));\n  } catch (error) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: `samples file did not parse: ${(error as Error).message}`,\n    };\n  }\n\n  const provenance = lastJsonLine(stdout);\n  const julia = provenance?.julia_version as string | undefined;\n  const record: RunRecord = {\n    schema_version: RUN_RECORD_SCHEMA_VERSION,\n    spec_hash: spec.specHash,\n    seed: spec.seed,\n    backend: { id: spec.backend.id, runtime: spec.backend.runtime },\n    runtime: { requested: runtimeRequested, actual: julia, path: resolved.command },\n    manifest_sha256: provenance?.manifest_sha256 as string | undefined,\n    packages: provenance?.packages as Record<string, string> | undefined,\n    model_sha256: existsSync(spec.modelPath)\n      ? sha256(readFileSync(spec.modelPath, \"utf8\"))\n      : undefined,\n    data_sha256: sha256(canonicalJson(data)),\n    posterior_samples: io.samplesPath,\n    posterior_samples_sha256: existsSync(io.samplesPath)\n      ? sha256(readFileSync(io.samplesPath, \"utf8\"))\n      : undefined,\n    samples_file: io.outPath,\n    started_at: startedAt,\n    elapsed_ms: elapsedMs,\n  };\n  writeFileSync(`${io.outPath}.run.json`, `${JSON.stringify(record, null, 2)}\\n`);\n\n  return {\n    status: \"ok\",\n    samplesFile: io.outPath,\n    runtimeRequested,\n    runtimeActual: julia,\n    elapsedMs,\n  };\n}\n","import { copyFileSync, existsSync, mkdirSync, readFileSync, writeFileSync } from \"node:fs\";\nimport { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport { canonicalJson, DEFAULT_JULIA_CHANNEL } from \"@mcmcjs/core\";\nimport { type CommandRunner, createRunner } from \"@mcmcjs/engine\";\nimport { pinnedEnvDir, sha256 } from \"./runner-common\";\n\nconst PACKAGES = [\n  \"Turing\",\n  \"FlexiChains\",\n  \"DimensionalData\",\n  \"MCMCChains\",\n  \"JuliaBUGS\",\n  \"AdvancedHMC\",\n  \"ForwardDiff\",\n  \"Mooncake\",\n  \"ReverseDiff\",\n  \"JSON\",\n  \"StableRNGs\",\n  \"StatsFuns\",\n];\n\n/** Version pins for managed packages, by name (e.g. { Turing: \"0.45\" }). */\nexport type PackagePins = Record<string, string>;\n\n// Version strings are interpolated into Julia source for Pkg.add; this allows\n// only the characters of a Julia version specifier (digits, letters, and the\n// range operators) and notably excludes `$` and backticks, which would\n// otherwise let a shared spec run arbitrary Julia via string interpolation.\nconst VERSION_RE = /^[0-9A-Za-z.+~^=<>,\\s-]+$/;\n\n/** Rejects a version string that could break out of the generated Julia literal. */\nexport function validateVersionString(name: string, version: string): void {\n  if (!VERSION_RE.test(version)) {\n    throw new Error(\n      `invalid version \"${version}\" for package ${name}; a version may contain only digits, letters, and . + ~ ^ = < > , - and spaces`,\n    );\n  }\n}\n\n/** Rejects pins for unmanaged packages or with unsafe version strings. */\nexport function validatePins(pins: PackagePins | undefined): void {\n  for (const [name, version] of Object.entries(pins ?? {})) {\n    if (!PACKAGES.includes(name)) {\n      throw new Error(\n        `cannot pin unknown package \"${name}\"; managed packages are: ${PACKAGES.join(\", \")}`,\n      );\n    }\n    validateVersionString(name, version);\n  }\n}\n\nfunction hasPins(pins?: PackagePins): pins is PackagePins {\n  return pins !== undefined && Object.keys(pins).length > 0;\n}\n\n/**\n * The per-user directory holding a managed Julia project (Project + Manifest).\n * Keyed by the concrete Julia version AND any package pins, so each version\n * resolves its own compatible Manifest and each distinct set of pins gets its\n * own environment: a Manifest resolved by one Julia version (or package set)\n * can pin versions that fail to precompile under another. A missing version\n * and no pins falls back to the unversioned root.\n */\nexport function managedProjectDir(version?: string, pins?: PackagePins): string {\n  const base = process.env.XDG_DATA_HOME || join(homedir(), \".local\", \"share\");\n  const root = join(base, \"mcmcjs\", \"julia\", \"env\");\n  if (!version && !hasPins(pins)) return root;\n  let leaf = (version ?? \"default\").replace(/[^A-Za-z0-9._-]/g, \"_\");\n  if (hasPins(pins)) leaf += `-${sha256(canonicalJson(pins)).slice(0, 8)}`;\n  return join(root, leaf);\n}\n\n// Records what a managed dir was provisioned with (package set + pins), so an\n// env from an older set is healed (Pkg.add is additive) rather than left stale.\nfunction sentinelPath(dir: string): string {\n  return join(dir, \".mcmcjs-packages.json\");\n}\n\n// Bumped when the provisioning changes shape so existing envs re-provision; e.g.\n// generation 1 introduced instantiating the committed Manifest for the default,\n// which a pre-existing fresh-resolved env must pick up.\nconst PROVISION_GENERATION = 1;\n\nfunction expectedSentinel(pins?: PackagePins): string {\n  return canonicalJson({\n    gen: PROVISION_GENERATION,\n    packages: [...PACKAGES].sort(),\n    pins: pins ?? {},\n  });\n}\n\nfunction provisioned(dir: string, pins?: PackagePins): boolean {\n  try {\n    return readFileSync(sentinelPath(dir), \"utf8\").trim() === expectedSentinel(pins);\n  } catch {\n    return false;\n  }\n}\n\n/** Whether the managed project is present and provisioned with the current package set and pins. */\nexport function managedProjectReady(\n  dir: string = managedProjectDir(),\n  pins?: PackagePins,\n): boolean {\n  return existsSync(join(dir, \"Project.toml\")) && provisioned(dir, pins);\n}\n\n/** The `Pkg.add` argument: a PackageSpec per managed package, version-pinned where requested. */\nfunction packageSpecsCode(pins?: PackagePins): string {\n  const specs = PACKAGES.map((name) => {\n    const version = pins?.[name];\n    return version\n      ? `Pkg.PackageSpec(name=${JSON.stringify(name)}, version=${JSON.stringify(version)})`\n      : `Pkg.PackageSpec(name=${JSON.stringify(name)})`;\n  });\n  return `[${specs.join(\", \")}]`;\n}\n\n/**\n * Whether a provision should instantiate the shipped, resolved env (exact\n * committed package set) rather than resolving fresh: only the unpinned default\n * on the pinned Julia version, and only when the shipped env is present. Other\n * versions (a `--versions` matrix) and any package pins must resolve fresh,\n * since the committed Manifest was resolved for one specific Julia version.\n */\nfunction usesPinnedEnv(version: string | undefined, pins?: PackagePins): boolean {\n  return !hasPins(pins) && version === DEFAULT_JULIA_CHANNEL && existsSync(pinnedEnvDir());\n}\n\n/**\n * Ensures the managed Julia project exists with the inference packages installed\n * (version-pinned where `pins` requests). Idempotent: returns immediately when\n * already provisioned with the current set and pins. For the default env on the\n * pinned Julia version it instantiates the shipped, resolved Manifest (the exact\n * committed package set); otherwise it resolves and adds the packages fresh. The\n * first provision precompiles the project, which can take several minutes.\n */\nexport async function ensureProject(\n  juliaBin: string,\n  run: CommandRunner = createRunner(30 * 60_000),\n  dir: string = managedProjectDir(),\n  pins?: PackagePins,\n  opts?: { version?: string },\n): Promise<string> {\n  validatePins(pins);\n  if (managedProjectReady(dir, pins)) return dir;\n  mkdirSync(dir, { recursive: true });\n  if (usesPinnedEnv(opts?.version, pins)) {\n    copyFileSync(join(pinnedEnvDir(), \"Project.toml\"), join(dir, \"Project.toml\"));\n    copyFileSync(join(pinnedEnvDir(), \"Manifest.toml\"), join(dir, \"Manifest.toml\"));\n    await run(juliaBin, [\n      \"--startup-file=no\",\n      `--project=${dir}`,\n      \"-e\",\n      \"using Pkg; Pkg.instantiate(); Pkg.precompile()\",\n    ]);\n  } else {\n    const code = `using Pkg; Pkg.add(${packageSpecsCode(pins)}); Pkg.precompile()`;\n    await run(juliaBin, [\"--startup-file=no\", `--project=${dir}`, \"-e\", code]);\n  }\n  writeFileSync(sentinelPath(dir), expectedSentinel(pins));\n  return dir;\n}\n","import { join } from \"node:path\";\nimport type { ResolvedSpec } from \"@mcmcjs/core\";\nimport type { FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { runFit } from \"./fit\";\n\nexport interface MatrixEntry {\n  version: string;\n  status: \"ok\" | \"error\" | \"cancelled\";\n  samplesFile?: string;\n  runtimeActual?: string;\n  elapsedMs: number;\n  stage?: FitResult[\"stage\"];\n  error?: string;\n}\n\nexport interface MatrixResult {\n  entries: MatrixEntry[];\n  /** True only when every requested version ran and succeeded. */\n  ok: boolean;\n}\n\nexport interface ResolvedInvocation {\n  command: string;\n  args: string[];\n  version?: string;\n}\n\nexport interface MatrixIo {\n  spawn: FitRunner;\n  /** Directory the per-version samples files are written into. */\n  outDir: string;\n  /** Resolves a version/channel to a concrete invocation; injectable for tests. */\n  resolve: (version: string) => Promise<ResolvedInvocation>;\n  /** Provisions the managed env for a resolved version and returns its dir. */\n  ensure: (resolved: ResolvedInvocation) => Promise<string>;\n  /** Source path when the data came from a referenced file; recorded per version. */\n  dataFile?: string;\n  /** Overrides the recorded data hash (the data file's bytes hash). */\n  dataSha256?: string;\n  /** Continue after a version fails instead of stopping. */\n  keepGoing?: boolean;\n}\n\n/** Runs the same spec across several Julia versions, one samples file per version. */\nexport async function runMatrix(\n  spec: ResolvedSpec,\n  versions: string[],\n  io: MatrixIo,\n): Promise<MatrixResult> {\n  const entries: MatrixEntry[] = [];\n  for (const version of versions) {\n    let entry: MatrixEntry;\n    try {\n      const resolved = await io.resolve(version);\n      const projectDir = await io.ensure(resolved);\n      const versioned = { ...spec, backend: { ...spec.backend, version } };\n      const result = await runFit(versioned, resolved, {\n        spawn: io.spawn,\n        projectDir,\n        outPath: join(io.outDir, `${version}.samples.json`),\n        dataFile: io.dataFile,\n        dataSha256: io.dataSha256,\n      });\n      entry = {\n        version,\n        status: result.status,\n        samplesFile: result.samplesFile,\n        runtimeActual: result.runtimeActual,\n        elapsedMs: result.elapsedMs,\n        stage: result.stage,\n        error: result.error,\n      };\n    } catch (error) {\n      entry = { version, status: \"error\", elapsedMs: 0, error: (error as Error).message };\n    }\n    entries.push(entry);\n    // A cancelled run stops the whole matrix regardless of keepGoing.\n    if (entry.status === \"cancelled\") break;\n    if (entry.status === \"error\" && !io.keepGoing) break;\n  }\n  return {\n    entries,\n    ok: entries.length === versions.length && entries.every((e) => e.status === \"ok\"),\n  };\n}\n","import { DEFAULT_JULIA_CHANNEL } from \"@mcmcjs/core\";\nimport { type DoctorReport, runDoctor } from \"./doctor\";\nimport { type CommandRunner, createRunner, type ToolInfo } from \"./environment\";\n\n/** The official juliaup install script, piped to a shell by the install step. */\nconst JULIAUP_INSTALL_URL = \"https://install.julialang.org\";\n\n/** An executable and its arguments, run directly (no shell word-splitting). */\nexport interface InstallCommand {\n  command: string;\n  args: string[];\n}\n\n/**\n * The command that installs juliaup on the given platform, or null when\n * automatic install is not yet supported there.\n */\nexport function juliaupInstallCommand(platform: NodeJS.Platform): InstallCommand | null {\n  if (platform === \"win32\") {\n    // TODO: install juliaup on Windows via winget or the Microsoft Store.\n    return null;\n  }\n  // `--default-channel` makes the installer add the pinned Julia version (not\n  // just the latest \"release\") in the same step, so a clean machine lands on\n  // the exact version the committed Manifest was resolved for.\n  return {\n    command: \"sh\",\n    args: [\n      \"-c\",\n      `curl -fsSL ${JULIAUP_INSTALL_URL} | sh -s -- --yes --default-channel ${DEFAULT_JULIA_CHANNEL}`,\n    ],\n  };\n}\n\n/** A single provisioning step needed to make the toolchain ready. */\nexport interface SetupStep {\n  tool: \"juliaup\" | \"julia\";\n  /** A short description of what the step does. */\n  label: string;\n  /** The command to run, or null when the step cannot be performed automatically. */\n  command: InstallCommand | null;\n}\n\n/** The ordered steps needed to reach a ready toolchain, given the current state. */\nexport function planSetup(report: DoctorReport, platform: NodeJS.Platform): SetupStep[] {\n  // The pinned Julia is already the active default: nothing to do.\n  if (report.julia.found && report.julia.version === DEFAULT_JULIA_CHANNEL) return [];\n  if (report.juliaup.found) {\n    return [\n      {\n        tool: \"julia\",\n        label: `install the pinned Julia ${DEFAULT_JULIA_CHANNEL} via juliaup`,\n        command: {\n          command: report.juliaup.path ?? \"juliaup\",\n          args: [\"add\", DEFAULT_JULIA_CHANNEL],\n        },\n      },\n    ];\n  }\n  return [\n    {\n      tool: \"juliaup\",\n      label: `install juliaup with the pinned Julia ${DEFAULT_JULIA_CHANNEL}`,\n      command: juliaupInstallCommand(platform),\n    },\n  ];\n}\n\nexport type StepStatus = \"ran\" | \"skipped\" | \"failed\" | \"unsupported\";\n\nexport interface SetupStepResult extends SetupStep {\n  status: StepStatus;\n  /** Error detail when the step failed. */\n  detail?: string;\n}\n\nexport interface SetupResult {\n  juliaup: ToolInfo;\n  julia: ToolInfo;\n  /** True when Julia is available after setup. */\n  ready: boolean;\n  steps: SetupStepResult[];\n}\n\nexport interface SetupOptions {\n  /** Runs detection commands. Injectable for tests. */\n  runner?: CommandRunner;\n  /** Runs install steps, which may take several minutes. Injectable for tests. */\n  installer?: CommandRunner;\n  /** Target platform; defaults to the current process platform. */\n  platform?: NodeJS.Platform;\n  /** Plan the steps but do not run them. */\n  dryRun?: boolean;\n}\n\n/** Installs the Julia toolchain (juliaup and Julia) needed for inference. */\nexport async function runSetup(options: SetupOptions = {}): Promise<SetupResult> {\n  const {\n    runner,\n    installer = createRunner(15 * 60_000),\n    platform = process.platform,\n    dryRun = false,\n  } = options;\n\n  const before = await runDoctor(runner);\n  const plan = planSetup(before, platform);\n  // Nothing to install only when the pinned Julia is already the active\n  // default; a different installed Julia still triggers a pinned-version add.\n  if (plan.length === 0) return { ...before, steps: [] };\n\n  if (dryRun) {\n    return {\n      ...before,\n      steps: plan.map((step) => ({ ...step, status: step.command ? \"skipped\" : \"unsupported\" })),\n    };\n  }\n\n  const steps: SetupStepResult[] = [];\n  for (const step of plan) {\n    if (!step.command) {\n      steps.push({ ...step, status: \"unsupported\" });\n      continue;\n    }\n    try {\n      await installer(step.command.command, step.command.args);\n      steps.push({ ...step, status: \"ran\" });\n    } catch (error) {\n      const detail = error instanceof Error ? error.message : String(error);\n      steps.push({ ...step, status: \"failed\", detail });\n    }\n  }\n\n  const after = await runDoctor(runner);\n  return { juliaup: after.juliaup, julia: after.julia, ready: after.ready, steps };\n}\n","import type { CommandRunner, RuntimeVersion } from \"@mcmcjs/engine\";\n\ninterface ChannelInfo {\n  Name: string;\n  File: string;\n  Args?: string[];\n  Version?: string;\n  Arch?: string;\n}\n\ninterface Getconfig1 {\n  DefaultChannel: ChannelInfo | null;\n  OtherChannels: ChannelInfo[];\n}\n\nfunction parseChannel(value: unknown): ChannelInfo {\n  const c = value as Record<string, unknown>;\n  if (!c || typeof c.Name !== \"string\" || typeof c.File !== \"string\") {\n    throw new Error(\"unexpected `juliaup api getconfig1` channel shape\");\n  }\n  return {\n    Name: c.Name,\n    File: c.File,\n    Args: Array.isArray(c.Args) ? (c.Args as string[]) : undefined,\n    Version: typeof c.Version === \"string\" ? c.Version : undefined,\n    Arch: typeof c.Arch === \"string\" ? c.Arch : undefined,\n  };\n}\n\nfunction parseGetconfig1(raw: string): Getconfig1 {\n  let data: unknown;\n  try {\n    data = JSON.parse(raw);\n  } catch {\n    throw new Error(\"could not parse `juliaup api getconfig1` output as JSON\");\n  }\n  const obj = data as Record<string, unknown>;\n  if (!obj || typeof obj !== \"object\" || !Array.isArray(obj.OtherChannels)) {\n    throw new Error(\"unexpected `juliaup api getconfig1` output\");\n  }\n  return {\n    DefaultChannel: obj.DefaultChannel ? parseChannel(obj.DefaultChannel) : null,\n    OtherChannels: obj.OtherChannels.map(parseChannel),\n  };\n}\n\nfunction toVersion(channel: ChannelInfo, isDefault: boolean): RuntimeVersion {\n  return { id: channel.Name, version: channel.Version, path: channel.File || undefined, isDefault };\n}\n\n/** Lists the installed Julia versions, marking the default channel. */\nexport async function listVersions(bin: string, run: CommandRunner): Promise<RuntimeVersion[]> {\n  const config = parseGetconfig1(await run(bin, [\"api\", \"getconfig1\"]));\n  const versions: RuntimeVersion[] = [];\n  if (config.DefaultChannel) versions.push(toVersion(config.DefaultChannel, true));\n  for (const channel of config.OtherChannels) versions.push(toVersion(channel, false));\n  return versions;\n}\n\nexport async function addVersion(\n  bin: string,\n  channel: string,\n  opts: { default?: boolean },\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, [\"add\", channel]);\n  if (opts.default) await run(bin, [\"default\", channel]);\n}\n\nexport async function removeVersion(\n  bin: string,\n  channel: string,\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, [\"remove\", channel]);\n}\n\nexport async function setDefaultVersion(\n  bin: string,\n  channel: string,\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, [\"default\", channel]);\n}\n\nexport async function updateVersion(\n  bin: string,\n  channel: string | undefined,\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, channel ? [\"update\", channel] : [\"update\"]);\n}\n\nexport async function gcVersions(bin: string, run: CommandRunner): Promise<void> {\n  await run(bin, [\"gc\"]);\n}\n\n/** Resolves a channel to a concrete invocation, preferring its absolute binary path. */\nexport async function resolveVersion(\n  bin: string,\n  channel: string,\n  run: CommandRunner,\n): Promise<{ command: string; args: string[]; version?: string }> {\n  const config = parseGetconfig1(await run(bin, [\"api\", \"getconfig1\"]));\n  const all = config.DefaultChannel\n    ? [config.DefaultChannel, ...config.OtherChannels]\n    : config.OtherChannels;\n  const match = all.find((c) => c.Name === channel);\n  if (!match?.File) {\n    throw new Error(\n      `Julia version \"${channel}\" is not installed. Add it with: mcmc julia version add ${channel}`,\n    );\n  }\n  return { command: match.File, args: match.Args ?? [], version: match.Version };\n}\n\n/** Throws with an actionable message if any requested channel is not installed. */\nexport function assertVersionsInstalled(channels: string[], installed: RuntimeVersion[]): void {\n  const have = new Set(installed.map((v) => v.id));\n  const missing = channels.filter((c) => !have.has(c));\n  if (missing.length > 0) {\n    const fixes = missing.map((m) => `mcmc julia version add ${m}`).join(\"; \");\n    throw new Error(\n      `Julia version(s) not installed: ${missing.join(\", \")}. Install with: ${fixes}`,\n    );\n  }\n}\n","import { spawn } from \"node:child_process\";\nimport { mkdirSync, readdirSync, readFileSync, rmdirSync, rmSync, statSync } from \"node:fs\";\nimport { createConnection, type Socket } from \"node:net\";\nimport { join } from \"node:path\";\nimport type { ResolvedSpec } from \"@mcmcjs/core\";\nimport type { FitResult } from \"@mcmcjs/engine\";\nimport { parseDrawBatchLine, parseProgressLine } from \"@mcmcjs/engine\";\nimport { type FitIo, finalizeOkFit, fitRequest, runFit } from \"./fit\";\nimport { sha256, sharedTmpParent, toStage, workerPath } from \"./runner-common\";\n\nconst START_WAIT_MS = 180_000;\nconst CONNECT_TIMEOUT_MS = 1_000;\nconst STOP_ACK_TIMEOUT_MS = 3_000;\n\n/** Same 30-minute budget as the one-shot driver; MCMC_WORKER_TIMEOUT_MS overrides. */\nfunction fitInactivityTimeoutMs(): number {\n  const fromEnv = Number(process.env.MCMC_WORKER_TIMEOUT_MS);\n  return Number.isFinite(fromEnv) && fromEnv > 0 ? fromEnv : 30 * 60_000;\n}\n\n/** A hung worker is not retried; the fit is reported failed instead. */\nclass WorkerTimeoutError extends Error {}\n\n/** The caller aborted the fit; the worker is killed and the run ends cancelled. */\nclass FitCancelledError extends Error {}\n\n/** The pidfile a worker writes beside its socket so a fit can be killed cross-process. */\nfunction workerPidPath(socket: string): string {\n  return `${socket}.pid`;\n}\n\n/**\n * Force-kills the worker serving `socket` (by the pid it wrote beside the\n * socket) and clears the socket and pidfile, so the next fit cold-starts a\n * fresh worker. Used to stop a worker mid-fit, which the polite stop cannot do\n * while it is busy sampling.\n */\nexport function killWorker(socket: string): void {\n  const pidPath = workerPidPath(socket);\n  try {\n    const pid = Number(readFileSync(pidPath, \"utf8\").trim());\n    if (Number.isInteger(pid) && pid > 0) {\n      // The worker is a detached process-group leader, so signaling -pid takes\n      // down any precompile/child processes it spawned, not just the parent.\n      try {\n        process.kill(-pid, \"SIGKILL\");\n      } catch {\n        process.kill(pid, \"SIGKILL\");\n      }\n    }\n  } catch {}\n  rmSync(socket, { force: true });\n  rmSync(pidPath, { force: true });\n}\n\n/** Where worker sockets live; runtime dir when available, the shared tmp parent otherwise. */\nexport function workersDir(): string {\n  const runtime = process.env.XDG_RUNTIME_DIR;\n  const dir = runtime ? join(runtime, \"mcmcjs\") : join(sharedTmpParent(), \"workers\");\n  mkdirSync(dir, { recursive: true, mode: 0o700 });\n  return dir;\n}\n\n/** One worker per (Julia binary, project env) pair, named by a key hash. */\nexport function workerSocketPath(command: string, projectDir: string): string {\n  return join(workersDir(), `worker-${sha256(`${command}\\n${projectDir}`).slice(0, 12)}.sock`);\n}\n\nfunction connectOnce(path: string): Promise<Socket> {\n  return new Promise((resolve, reject) => {\n    const sock = createConnection(path);\n    const timer = setTimeout(() => {\n      sock.destroy();\n      reject(new Error(\"connect timeout\"));\n    }, CONNECT_TIMEOUT_MS);\n    sock.once(\"connect\", () => {\n      clearTimeout(timer);\n      resolve(sock);\n    });\n    sock.once(\"error\", (error) => {\n      clearTimeout(timer);\n      reject(error);\n    });\n  });\n}\n\nconst delay = (ms: number) => new Promise((resolve) => setTimeout(resolve, ms));\n\n/**\n * Serializes cold starts: only one invocation spawns a worker per socket path;\n * the rest poll the socket. 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Two exceptions never fall\n * back: a fit that genuinely failed (model error) is returned, and a hung\n * worker (timeout) is reported rather than silently re-run for another\n * half hour.\n */\nexport async function runFitAuto(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: FitIo & { daemon?: boolean; notify?: (line: string) => void },\n): Promise<FitResult> {\n  if (io.signal?.aborted) {\n    return { status: \"cancelled\", runtimeRequested: spec.backend.version, elapsedMs: 0 };\n  }\n  if (io.daemon && process.platform !== \"win32\") {\n    const start = performance.now();\n    try {\n      return await runFitViaWorker(spec, resolved, io);\n    } catch (error) {\n      if (error instanceof WorkerTimeoutError) {\n        return {\n          status: \"error\",\n          runtimeRequested: spec.backend.version,\n          elapsedMs: Math.round(performance.now() - start),\n          stage: \"worker\",\n          error: `${error.message}; the worker may be wedged, try mcmc daemon stop`,\n        };\n      }\n      io.notify?.(\n        `worker unavailable (${(error as Error).message}); falling back to a one-shot run`,\n      );\n    }\n  }\n  return runFit(spec, resolved, io);\n}\n\nexport interface WorkerStatus {\n  socket: string;\n  alive: boolean;\n}\n\n/** Lists known worker sockets and whether each answers. */\nexport async function listWorkers(): Promise<WorkerStatus[]> {\n  const dir = workersDir();\n  const sockets = readdirSync(dir).filter((f) => f.startsWith(\"worker-\") && f.endsWith(\".sock\"));\n  const statuses: WorkerStatus[] = [];\n  for (const name of sockets) {\n    const socket = join(dir, name);\n    let alive = false;\n    try {\n      const sock = await connectOnce(socket);\n      sock.destroy();\n      alive = true;\n    } catch {}\n    statuses.push({ socket, alive });\n  }\n  return statuses;\n}\n\nexport type StopOutcome = \"stopped\" | \"stale\" | \"pending\";\n\n/**\n * Asks one worker to shut down. \"stopped\": acknowledged and gone. \"stale\": the\n * socket was dead and its file was removed. \"pending\": the worker is busy with\n * a fit; the stop request is queued and honored when the fit finishes, so the\n * live socket file is left alone.\n */\nexport async function stopWorker(socket: string): Promise<StopOutcome> {\n  let sock: Socket;\n  try {\n    sock = await connectOnce(socket);\n  } catch {\n    rmSync(socket, { force: true });\n    return \"stale\";\n  }\n  const acked = await new Promise<boolean>((resolve) => {\n    const timer = setTimeout(() => resolve(false), STOP_ACK_TIMEOUT_MS);\n    const finish = (ok: boolean) => {\n      clearTimeout(timer);\n      resolve(ok);\n    };\n    // Without a flowing readable side the worker's FIN is never surfaced.\n    sock.resume();\n    sock.on(\"close\", () => finish(true));\n    sock.on(\"error\", () => finish(false));\n    sock.write('{\"mcmcjs\":\"stop\"}\\n');\n  });\n  sock.destroy();\n  if (!acked) return \"pending\";\n  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+{"version":3,"sources":["../src/environment.ts","../src/doctor.ts","../src/engine.ts","../src/fit.ts","../src/runner-common.ts","../src/loglik.ts","../src/predict.ts","../src/project.ts","../src/run-matrix.ts","../src/setup.ts","../src/versions.ts","../src/worker.ts"],"sourcesContent":["import { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport { type CommandRunner, createRunner, type ToolInfo } from \"@mcmcjs/engine\";\n\nexport type { CommandRunner, ToolInfo } from \"@mcmcjs/engine\";\nexport { createRunner } from \"@mcmcjs/engine\";\n\nconst defaultRunner = createRunner();\n\n// juliaup installs its shims under the home directory; we also fall back to\n// whatever is on PATH. $HOME is honored first so a sandbox that redirects HOME\n// (mcmc sandbox --strict) finds its own juliaup, not the user's.\nfunction candidates(binary: string): string[] {\n  const home = process.env.HOME || homedir();\n  return [join(home, \".juliaup\", \"bin\", binary), binary];\n}\n\nasync function detect(\n  binary: string,\n  parseVersion: (stdout: string) => string | undefined,\n  runner: CommandRunner,\n): Promise<ToolInfo> {\n  for (const path of candidates(binary)) {\n    try {\n      const version = parseVersion(await runner(path, [\"--version\"]));\n      if (version) return { found: true, version, path };\n    } catch {\n      // not available at this path; try the next candidate\n    }\n  }\n  return { found: false };\n}\n\nconst versionNumber = (stdout: string): string | undefined => stdout.match(/(\\d+\\.\\d+\\.\\d+)/)?.[1];\n\n/** Detects the Julia runtime via `julia --version`. */\nexport function detectJulia(runner: CommandRunner = defaultRunner): Promise<ToolInfo> {\n  return detect(\"julia\", versionNumber, runner);\n}\n\n/** Detects the juliaup version manager via `juliaup --version`. */\nexport function detectJuliaup(runner: CommandRunner = defaultRunner): Promise<ToolInfo> {\n  return detect(\"juliaup\", versionNumber, runner);\n}\n","import { type CommandRunner, detectJulia, detectJuliaup, type ToolInfo } from \"./environment\";\n\n/** A summary of the Julia toolchain available for inference. */\nexport interface DoctorReport {\n  juliaup: ToolInfo;\n  julia: ToolInfo;\n  /** True when Julia itself is available (the minimum needed to run inference). */\n  ready: boolean;\n}\n\n/** Detects the installed Julia toolchain and reports whether inference can run. */\nexport async function runDoctor(runner?: CommandRunner): Promise<DoctorReport> {\n  const [juliaup, julia] = await Promise.all([detectJuliaup(runner), detectJulia(runner)]);\n  return { juliaup, julia, ready: julia.found };\n}\n","import type { Engine, EngineContext, HealthReport } from \"@mcmcjs/engine\";\nimport { runDoctor } from \"./doctor\";\n\nconst JULIAUP_URL = \"https://github.com/JuliaLang/juliaup\";\n\nexport const juliaEngine: Engine = {\n  id: \"julia\",\n  displayName: \"Julia\",\n  capabilities: { setup: true, versions: true, fit: true, predict: true },\n  async doctor(ctx: EngineContext): Promise<HealthReport> {\n    const report = await runDoctor(ctx.run);\n    return {\n      engineId: \"julia\",\n      ready: report.ready,\n      tools: [\n        { name: \"juliaup\", ...report.juliaup },\n        { name: \"julia\", ...report.julia },\n      ],\n      hint: report.ready\n        ? undefined\n        : `Julia not found. Install it with juliaup (${JULIAUP_URL}), or run \\`mcmc setup\\`.`,\n    };\n  },\n};\n","import { existsSync, mkdirSync, mkdtempSync, readFileSync, rmSync, writeFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport {\n  canonicalJson,\n  parseSamples,\n  type ResolvedSpec,\n  RUN_RECORD_SCHEMA_VERSION,\n  type RunRecord,\n} from \"@mcmcjs/core\";\nimport type { DrawBatch, FitProgress, FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { driverPath, lastJsonLine, sha256, sharedTmpParent, toStage } from \"./runner-common\";\n\nexport interface FitIo {\n  /** Spawns the Julia process; injectable so runFit is testable without Julia. */\n  spawn: FitRunner;\n  /** The managed Julia project directory passed as --project. */\n  projectDir: string;\n  /** Where the samples file is written. */\n  outPath: string;\n  /** Where the run record is written; defaults to `<outPath>.run.json`. */\n  recordPath?: string;\n  /** Streamed per-chain sampling progress. */\n  onProgress?: (progress: FitProgress) => void;\n  /** Streamed draw batches as sampling proceeds. */\n  onDraws?: (batch: DrawBatch) => void;\n  /** Raw console lines from the sampler as they arrive (structured progress/draws\n   * lines are filtered out), for surfacing solver logs live. */\n  onLog?: (line: string, stream: \"stdout\" | \"stderr\") => void;\n  /** Draws per streamed batch (driver default 25); lower it when models have many leaves. */\n  drawBatchSize?: number;\n  /** Aborts an in-progress fit; the run then ends with a \"cancelled\" status. */\n  signal?: AbortSignal;\n  /** Source path when the data came from a referenced file; recorded, not copied. */\n  dataFile?: string;\n  /** Overrides the recorded data hash (e.g. the data file's bytes hash). */\n  dataSha256?: string;\n  tmpDir?: string;\n}\n\n/** A fresh request dir under the shared per-user tmp parent. */\nexport function makeRequestDir(kind: string): string {\n  const parent = sharedTmpParent();\n  mkdirSync(parent, { recursive: true });\n  return mkdtempSync(join(parent, `${kind}-`));\n}\n\n/** The driver/worker request object for one fit. */\nexport function fitRequest(\n  spec: ResolvedSpec,\n  outPath: string,\n  opts?: { streamDraws?: boolean; drawBatchSize?: number },\n): Record<string, unknown> {\n  return {\n    schema_version: spec.schema_version,\n    backend: { id: spec.backend.id },\n    model: { file: spec.modelPath, entry: spec.model.entry },\n    data: spec.data,\n    sampler: spec.sampler,\n    seed: spec.seed,\n    out: outPath,\n    ...(opts?.streamDraws ? { stream_draws: true } : {}),\n    ...(opts?.drawBatchSize ? { draw_batch_size: opts.drawBatchSize } : {}),\n  };\n}\n\n/**\n * Validates the written samples and records provenance; the success tail\n * shared by the one-shot driver and the worker paths.\n */\nexport function finalizeOkFit(\n  spec: ResolvedSpec,\n  resolved: { command: string },\n  io: Pick<FitIo, \"outPath\" | \"recordPath\" | \"dataFile\" | \"dataSha256\">,\n  provenance: Record<string, unknown> | undefined,\n  startedAt: string,\n  elapsedMs: number,\n): FitResult {\n  const runtimeRequested = spec.backend.version;\n  if (!existsSync(io.outPath)) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: \"the runtime reported success but wrote no samples file\",\n    };\n  }\n  try {\n    parseSamples(readFileSync(io.outPath, \"utf8\"));\n  } catch (error) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: `samples file did not parse: ${(error as Error).message}`,\n    };\n  }\n\n  const julia = provenance?.julia_version as string | undefined;\n  const record: RunRecord = {\n    schema_version: RUN_RECORD_SCHEMA_VERSION,\n    spec_hash: spec.specHash,\n    seed: spec.seed,\n    backend: { id: spec.backend.id, runtime: spec.backend.runtime },\n    runtime: { requested: runtimeRequested, actual: julia, path: resolved.command },\n    manifest_sha256: provenance?.manifest_sha256 as string | undefined,\n    packages: provenance?.packages as Record<string, string> | undefined,\n    model_sha256: existsSync(spec.modelPath)\n      ? sha256(readFileSync(spec.modelPath, \"utf8\"))\n      : undefined,\n    data_sha256: io.dataSha256 ?? sha256(canonicalJson(spec.data)),\n    ...(io.dataFile ? { data_file: io.dataFile } : {}),\n    samples_file: io.outPath,\n    started_at: startedAt,\n    elapsed_ms: elapsedMs,\n  };\n  writeFileSync(io.recordPath ?? `${io.outPath}.run.json`, `${JSON.stringify(record, null, 2)}\\n`);\n\n  return {\n    status: \"ok\",\n    samplesFile: io.outPath,\n    runtimeRequested,\n    runtimeActual: julia,\n    elapsedMs,\n  };\n}\n\n/** Runs one inference for a resolved spec on a resolved runtime invocation. */\nexport async function runFit(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: FitIo,\n): Promise<FitResult> {\n  const startedAt = new Date().toISOString();\n  const start = performance.now();\n  const runtimeRequested = spec.backend.version;\n\n  if (io.signal?.aborted) {\n    return { status: \"cancelled\", runtimeRequested, elapsedMs: 0 };\n  }\n\n  const ownTmp = io.tmpDir === undefined;\n  const tmp = io.tmpDir ?? makeRequestDir(\"fit\");\n  const requestPath = join(tmp, \"request.json\");\n  writeFileSync(\n    requestPath,\n    JSON.stringify(\n      fitRequest(spec, io.outPath, {\n        streamDraws: io.onDraws !== undefined,\n        drawBatchSize: io.drawBatchSize,\n      }),\n    ),\n  );\n\n  const args = [\n    ...resolved.args,\n    \"--startup-file=no\",\n    ...(spec.sampler.parallel === \"threads\" ? [\"--threads=auto\"] : []),\n    `--project=${io.projectDir}`,\n    driverPath(),\n    requestPath,\n  ];\n  let stdout: string;\n  let stderr: string;\n  let code: number;\n  let cancelled: boolean | undefined;\n  try {\n    ({ stdout, stderr, code, cancelled } = await io.spawn(resolved.command, args, {\n      onProgress: io.onProgress,\n      onDraws: io.onDraws,\n      onLog: io.onLog,\n      signal: io.signal,\n    }));\n  } finally {\n    if (ownTmp) rmSync(tmp, { recursive: true, force: true });\n  }\n  const elapsedMs = Math.round(performance.now() - start);\n\n  if (cancelled) {\n    return { status: \"cancelled\", runtimeRequested, elapsedMs };\n  }\n\n  if (code !== 0 || !existsSync(io.outPath)) {\n    const failure = lastJsonLine(stderr);\n    const stage = toStage(failure?.stage);\n    const error =\n      (failure?.error as string) ??\n      stderr.trim().split(\"\\n\").pop() ??\n      `julia exited with code ${code}`;\n    return { status: \"error\", runtimeRequested, elapsedMs, stage, error };\n  }\n\n  return finalizeOkFit(spec, resolved, io, lastJsonLine(stdout), startedAt, elapsedMs);\n}\n","import { createHash } from \"node:crypto\";\nimport { existsSync } from \"node:fs\";\nimport { tmpdir } from \"node:os\";\nimport { dirname, join } from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\nimport type { FitResult } from \"@mcmcjs/engine\";\n\n/**\n * The per-user parent for all mcmcjs temp state. The uid suffix keeps users\n * on a shared /tmp out of each other's way (macOS tmpdir is per-user already,\n * Linux /tmp is not).\n */\nexport function sharedTmpParent(): string {\n  const uid = typeof process.getuid === \"function\" ? `-${process.getuid()}` : \"\";\n  return join(tmpdir(), `mcmcjs${uid}`);\n}\n\n// The driver scripts sit next to the bundle in the published dist/ (tsup copies\n// them there), but under src/driver/ when running from source (tests, tsx). Try\n// the bundle layout first, fall back to the source layout.\nfunction driverFile(name: string): string {\n  const here = dirname(fileURLToPath(import.meta.url));\n  const beside = join(here, name);\n  return existsSync(beside) ? beside : join(here, \"driver\", name);\n}\n\n/** Path to the shipped Julia driver. */\nexport function driverPath(): string {\n  return driverFile(\"driver.jl\");\n}\n\n/** Path to the shipped persistent worker. */\nexport function workerPath(): string {\n  return driverFile(\"worker.jl\");\n}\n\n/**\n * Directory holding the shipped, resolved Julia env (Project.toml + Manifest.toml),\n * next to this module in dist/. A fresh default provision instantiates this exact\n * package set rather than re-resolving the latest compatible versions.\n */\nexport function pinnedEnvDir(): string {\n  return join(dirname(fileURLToPath(import.meta.url)), \"julia-env\");\n}\n\nexport function sha256(text: string): string {\n  return createHash(\"sha256\").update(text).digest(\"hex\");\n}\n\n/** Parses the last JSON-object line of text (the driver's provenance or error line). */\nexport function lastJsonLine(text: string): Record<string, unknown> | undefined {\n  for (const line of text.trimEnd().split(\"\\n\").reverse()) {\n    const trimmed = line.trim();\n    if (!trimmed.startsWith(\"{\")) continue;\n    try {\n      return JSON.parse(trimmed) as Record<string, unknown>;\n    } catch {\n      return undefined;\n    }\n  }\n  return undefined;\n}\n\nconst STAGES = new Set<NonNullable<FitResult[\"stage\"]>>([\n  \"compile\",\n  \"sample\",\n  \"load_samples\",\n  \"predict\",\n  \"write\",\n  \"spawn\",\n  \"worker\",\n]);\n\n/** Narrows a driver-reported stage string to the known set. */\nexport function toStage(value: unknown): FitResult[\"stage\"] {\n  return typeof value === \"string\" && STAGES.has(value as NonNullable<FitResult[\"stage\"]>)\n    ? (value as FitResult[\"stage\"])\n    : undefined;\n}\n","import { existsSync, readFileSync, rmSync, writeFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport {\n  canonicalJson,\n  parseSamples,\n  type ResolvedSpec,\n  RUN_RECORD_SCHEMA_VERSION,\n  type RunRecord,\n} from \"@mcmcjs/core\";\nimport type { FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { makeRequestDir } from \"./fit\";\nimport { driverPath, lastJsonLine, sha256, toStage } from \"./runner-common\";\n\nexport interface LogLikIo {\n  /** Spawns the Julia process; injectable so runLogLik is testable without Julia. */\n  spawn: FitRunner;\n  projectDir: string;\n  /** Where the pointwise log-likelihood file is written (samples wire, one column per observation). */\n  outPath: string;\n  /** The posterior samples file the log-likelihood is evaluated at. */\n  samplesPath: string;\n  tmpDir?: string;\n}\n\n/**\n * Computes the pointwise log-likelihood of the observed data at each posterior\n * draw: one column per observation, in the same wire format as a samples file.\n * This is the input LOO/WAIC model comparison needs.\n */\nexport async function runLogLik(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: LogLikIo,\n): Promise<FitResult> {\n  const startedAt = new Date().toISOString();\n  const start = performance.now();\n  const runtimeRequested = spec.backend.version;\n\n  const ownTmp = io.tmpDir === undefined;\n  const tmp = io.tmpDir ?? makeRequestDir(\"loglik\");\n  const requestPath = join(tmp, \"request.json\");\n  writeFileSync(\n    requestPath,\n    JSON.stringify({\n      mode: \"loglik\",\n      schema_version: spec.schema_version,\n      backend: { id: spec.backend.id },\n      model: { file: spec.modelPath, entry: spec.model.entry },\n      data: spec.data,\n      samples: io.samplesPath,\n      seed: spec.seed,\n      out: io.outPath,\n    }),\n  );\n\n  const args = [\n    ...resolved.args,\n    \"--startup-file=no\",\n    `--project=${io.projectDir}`,\n    driverPath(),\n    requestPath,\n  ];\n  let stdout: string;\n  let stderr: string;\n  let code: number;\n  try {\n    ({ stdout, stderr, code } = await io.spawn(resolved.command, args));\n  } finally {\n    if (ownTmp) rmSync(tmp, { recursive: true, force: true });\n  }\n  const elapsedMs = Math.round(performance.now() - start);\n\n  if (code !== 0 || !existsSync(io.outPath)) {\n    const failure = lastJsonLine(stderr);\n    const error =\n      (failure?.error as string) ??\n      stderr.trim().split(\"\\n\").pop() ??\n      `julia exited with code ${code}`;\n    return { status: \"error\", runtimeRequested, elapsedMs, stage: toStage(failure?.stage), error };\n  }\n\n  try {\n    parseSamples(readFileSync(io.outPath, \"utf8\"));\n  } catch (error) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: `log-likelihood file did not parse: ${(error as Error).message}`,\n    };\n  }\n\n  const provenance = lastJsonLine(stdout);\n  const julia = provenance?.julia_version as string | undefined;\n  const record: RunRecord = {\n    schema_version: RUN_RECORD_SCHEMA_VERSION,\n    spec_hash: spec.specHash,\n    seed: spec.seed,\n    backend: { id: spec.backend.id, runtime: spec.backend.runtime },\n    runtime: { requested: runtimeRequested, actual: julia, path: resolved.command },\n    manifest_sha256: provenance?.manifest_sha256 as string | undefined,\n    packages: provenance?.packages as Record<string, string> | undefined,\n    model_sha256: existsSync(spec.modelPath)\n      ? sha256(readFileSync(spec.modelPath, \"utf8\"))\n      : undefined,\n    data_sha256: sha256(canonicalJson(spec.data)),\n    posterior_samples: io.samplesPath,\n    posterior_samples_sha256: existsSync(io.samplesPath)\n      ? sha256(readFileSync(io.samplesPath, \"utf8\"))\n      : undefined,\n    samples_file: io.outPath,\n    started_at: startedAt,\n    elapsed_ms: elapsedMs,\n  };\n  writeFileSync(`${io.outPath}.run.json`, `${JSON.stringify(record, null, 2)}\\n`);\n\n  return {\n    status: \"ok\",\n    samplesFile: io.outPath,\n    runtimeRequested,\n    runtimeActual: julia,\n    elapsedMs,\n  };\n}\n","import { existsSync, readFileSync, rmSync, writeFileSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport {\n  canonicalJson,\n  parseSamples,\n  type ResolvedSpec,\n  RUN_RECORD_SCHEMA_VERSION,\n  type RunRecord,\n} from \"@mcmcjs/core\";\nimport type { FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { makeRequestDir } from \"./fit\";\nimport { driverPath, lastJsonLine, sha256, toStage } from \"./runner-common\";\n\nexport interface PredictIo {\n  /** Spawns the Julia process; injectable so runPredict is testable without Julia. */\n  spawn: FitRunner;\n  projectDir: string;\n  /** Where the posterior-predictive samples file is written. */\n  outPath: string;\n  /** The posterior samples file fed to prediction. */\n  samplesPath: string;\n  tmpDir?: string;\n}\n\n/** The prediction data: [data] with [predict].data overrides, target outcomes blanked to nulls. */\nexport function predictData(spec: ResolvedSpec): Record<string, unknown> {\n  const predict = spec.predict;\n  if (!predict) throw new Error(\"spec has no [predict] block\");\n  const data: Record<string, unknown> = { ...spec.data, ...(predict.data ?? {}) };\n  // Blank a target to null, preserving array shape so the driver maps it to a\n  // matching shape of `missing` (a multidimensional outcome stays nested).\n  const blank = (value: unknown): unknown => (Array.isArray(value) ? value.map(blank) : null);\n  for (const target of predict.targets) {\n    data[target] = blank(data[target]);\n  }\n  return data;\n}\n\n/** Draws posterior-predictive samples from a fitted model and its posterior samples file. */\nexport async function runPredict(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: PredictIo,\n): Promise<FitResult> {\n  const startedAt = new Date().toISOString();\n  const start = performance.now();\n  const runtimeRequested = spec.backend.version;\n  const data = predictData(spec);\n\n  const ownTmp = io.tmpDir === undefined;\n  const tmp = io.tmpDir ?? makeRequestDir(\"predict\");\n  const requestPath = join(tmp, \"request.json\");\n  writeFileSync(\n    requestPath,\n    JSON.stringify({\n      mode: \"predict\",\n      schema_version: spec.schema_version,\n      backend: { id: spec.backend.id },\n      model: { file: spec.modelPath, entry: spec.model.entry },\n      data,\n      predict: { targets: spec.predict?.targets ?? [] },\n      samples: io.samplesPath,\n      seed: spec.seed,\n      out: io.outPath,\n    }),\n  );\n\n  const args = [\n    ...resolved.args,\n    \"--startup-file=no\",\n    `--project=${io.projectDir}`,\n    driverPath(),\n    requestPath,\n  ];\n  let stdout: string;\n  let stderr: string;\n  let code: number;\n  try {\n    ({ stdout, stderr, code } = await io.spawn(resolved.command, args));\n  } finally {\n    if (ownTmp) rmSync(tmp, { recursive: true, force: true });\n  }\n  const elapsedMs = Math.round(performance.now() - start);\n\n  if (code !== 0 || !existsSync(io.outPath)) {\n    const failure = lastJsonLine(stderr);\n    const error =\n      (failure?.error as string) ??\n      stderr.trim().split(\"\\n\").pop() ??\n      `julia exited with code ${code}`;\n    return { status: \"error\", runtimeRequested, elapsedMs, stage: toStage(failure?.stage), error };\n  }\n\n  try {\n    parseSamples(readFileSync(io.outPath, \"utf8\"));\n  } catch (error) {\n    return {\n      status: \"error\",\n      runtimeRequested,\n      elapsedMs,\n      stage: \"write\",\n      error: `samples file did not parse: ${(error as Error).message}`,\n    };\n  }\n\n  const provenance = lastJsonLine(stdout);\n  const julia = provenance?.julia_version as string | undefined;\n  const record: RunRecord = {\n    schema_version: RUN_RECORD_SCHEMA_VERSION,\n    spec_hash: spec.specHash,\n    seed: spec.seed,\n    backend: { id: spec.backend.id, runtime: spec.backend.runtime },\n    runtime: { requested: runtimeRequested, actual: julia, path: resolved.command },\n    manifest_sha256: provenance?.manifest_sha256 as string | undefined,\n    packages: provenance?.packages as Record<string, string> | undefined,\n    model_sha256: existsSync(spec.modelPath)\n      ? sha256(readFileSync(spec.modelPath, \"utf8\"))\n      : undefined,\n    data_sha256: sha256(canonicalJson(data)),\n    posterior_samples: io.samplesPath,\n    posterior_samples_sha256: existsSync(io.samplesPath)\n      ? sha256(readFileSync(io.samplesPath, \"utf8\"))\n      : undefined,\n    samples_file: io.outPath,\n    started_at: startedAt,\n    elapsed_ms: elapsedMs,\n  };\n  writeFileSync(`${io.outPath}.run.json`, `${JSON.stringify(record, null, 2)}\\n`);\n\n  return {\n    status: \"ok\",\n    samplesFile: io.outPath,\n    runtimeRequested,\n    runtimeActual: julia,\n    elapsedMs,\n  };\n}\n","import { copyFileSync, existsSync, mkdirSync, readFileSync, writeFileSync } from \"node:fs\";\nimport { homedir } from \"node:os\";\nimport { join } from \"node:path\";\nimport { canonicalJson, DEFAULT_JULIA_CHANNEL } from \"@mcmcjs/core\";\nimport { type CommandRunner, createRunner } from \"@mcmcjs/engine\";\nimport { pinnedEnvDir, sha256 } from \"./runner-common\";\n\nconst PACKAGES = [\n  \"Turing\",\n  \"FlexiChains\",\n  \"DimensionalData\",\n  \"MCMCChains\",\n  \"JuliaBUGS\",\n  \"AdvancedHMC\",\n  \"ForwardDiff\",\n  \"Mooncake\",\n  \"ReverseDiff\",\n  \"JSON\",\n  \"StableRNGs\",\n  \"StatsFuns\",\n];\n\n/** Version pins for managed packages, by name (e.g. { Turing: \"0.45\" }). */\nexport type PackagePins = Record<string, string>;\n\n// Version strings are interpolated into Julia source for Pkg.add; this allows\n// only the characters of a Julia version specifier (digits, letters, and the\n// range operators) and notably excludes `$` and backticks, which would\n// otherwise let a shared spec run arbitrary Julia via string interpolation.\nconst VERSION_RE = /^[0-9A-Za-z.+~^=<>,\\s-]+$/;\n\n/** Rejects a version string that could break out of the generated Julia literal. */\nexport function validateVersionString(name: string, version: string): void {\n  if (!VERSION_RE.test(version)) {\n    throw new Error(\n      `invalid version \"${version}\" for package ${name}; a version may contain only digits, letters, and . + ~ ^ = < > , - and spaces`,\n    );\n  }\n}\n\n/** Rejects pins for unmanaged packages or with unsafe version strings. */\nexport function validatePins(pins: PackagePins | undefined): void {\n  for (const [name, version] of Object.entries(pins ?? {})) {\n    if (!PACKAGES.includes(name)) {\n      throw new Error(\n        `cannot pin unknown package \"${name}\"; managed packages are: ${PACKAGES.join(\", \")}`,\n      );\n    }\n    validateVersionString(name, version);\n  }\n}\n\nfunction hasPins(pins?: PackagePins): pins is PackagePins {\n  return pins !== undefined && Object.keys(pins).length > 0;\n}\n\n/**\n * The per-user directory holding a managed Julia project (Project + Manifest).\n * Keyed by the concrete Julia version AND any package pins, so each version\n * resolves its own compatible Manifest and each distinct set of pins gets its\n * own environment: a Manifest resolved by one Julia version (or package set)\n * can pin versions that fail to precompile under another. A missing version\n * and no pins falls back to the unversioned root.\n */\nexport function managedProjectDir(version?: string, pins?: PackagePins): string {\n  const base = process.env.XDG_DATA_HOME || join(homedir(), \".local\", \"share\");\n  const root = join(base, \"mcmcjs\", \"julia\", \"env\");\n  if (!version && !hasPins(pins)) return root;\n  let leaf = (version ?? \"default\").replace(/[^A-Za-z0-9._-]/g, \"_\");\n  if (hasPins(pins)) leaf += `-${sha256(canonicalJson(pins)).slice(0, 8)}`;\n  return join(root, leaf);\n}\n\n// Records what a managed dir was provisioned with (package set + pins), so an\n// env from an older set is healed (Pkg.add is additive) rather than left stale.\nfunction sentinelPath(dir: string): string {\n  return join(dir, \".mcmcjs-packages.json\");\n}\n\n// Bumped when the provisioning changes shape so existing envs re-provision; e.g.\n// generation 1 introduced instantiating the committed Manifest for the default,\n// which a pre-existing fresh-resolved env must pick up.\nconst PROVISION_GENERATION = 1;\n\nfunction expectedSentinel(pins?: PackagePins): string {\n  return canonicalJson({\n    gen: PROVISION_GENERATION,\n    packages: [...PACKAGES].sort(),\n    pins: pins ?? {},\n  });\n}\n\nfunction provisioned(dir: string, pins?: PackagePins): boolean {\n  try {\n    return readFileSync(sentinelPath(dir), \"utf8\").trim() === expectedSentinel(pins);\n  } catch {\n    return false;\n  }\n}\n\n/** Whether the managed project is present and provisioned with the current package set and pins. */\nexport function managedProjectReady(\n  dir: string = managedProjectDir(),\n  pins?: PackagePins,\n): boolean {\n  return existsSync(join(dir, \"Project.toml\")) && provisioned(dir, pins);\n}\n\n/** The `Pkg.add` argument: a PackageSpec per managed package, version-pinned where requested. */\nfunction packageSpecsCode(pins?: PackagePins): string {\n  const specs = PACKAGES.map((name) => {\n    const version = pins?.[name];\n    return version\n      ? `Pkg.PackageSpec(name=${JSON.stringify(name)}, version=${JSON.stringify(version)})`\n      : `Pkg.PackageSpec(name=${JSON.stringify(name)})`;\n  });\n  return `[${specs.join(\", \")}]`;\n}\n\n/**\n * Whether a provision should instantiate the shipped, resolved env (exact\n * committed package set) rather than resolving fresh: only the unpinned default\n * on the pinned Julia version, and only when the shipped env is present. Other\n * versions (a `--versions` matrix) and any package pins must resolve fresh,\n * since the committed Manifest was resolved for one specific Julia version.\n */\nfunction usesPinnedEnv(version: string | undefined, pins?: PackagePins): boolean {\n  return !hasPins(pins) && version === DEFAULT_JULIA_CHANNEL && existsSync(pinnedEnvDir());\n}\n\n/**\n * Ensures the managed Julia project exists with the inference packages installed\n * (version-pinned where `pins` requests). Idempotent: returns immediately when\n * already provisioned with the current set and pins. For the default env on the\n * pinned Julia version it instantiates the shipped, resolved Manifest (the exact\n * committed package set); otherwise it resolves and adds the packages fresh. The\n * first provision precompiles the project, which can take several minutes.\n */\nexport async function ensureProject(\n  juliaBin: string,\n  run: CommandRunner = createRunner(30 * 60_000),\n  dir: string = managedProjectDir(),\n  pins?: PackagePins,\n  opts?: { version?: string },\n): Promise<string> {\n  validatePins(pins);\n  if (managedProjectReady(dir, pins)) return dir;\n  mkdirSync(dir, { recursive: true });\n  if (usesPinnedEnv(opts?.version, pins)) {\n    copyFileSync(join(pinnedEnvDir(), \"Project.toml\"), join(dir, \"Project.toml\"));\n    copyFileSync(join(pinnedEnvDir(), \"Manifest.toml\"), join(dir, \"Manifest.toml\"));\n    await run(juliaBin, [\n      \"--startup-file=no\",\n      `--project=${dir}`,\n      \"-e\",\n      \"using Pkg; Pkg.instantiate(); Pkg.precompile()\",\n    ]);\n  } else {\n    const code = `using Pkg; Pkg.add(${packageSpecsCode(pins)}); Pkg.precompile()`;\n    await run(juliaBin, [\"--startup-file=no\", `--project=${dir}`, \"-e\", code]);\n  }\n  writeFileSync(sentinelPath(dir), expectedSentinel(pins));\n  return dir;\n}\n","import { join } from \"node:path\";\nimport type { ResolvedSpec } from \"@mcmcjs/core\";\nimport type { FitResult, FitRunner } from \"@mcmcjs/engine\";\nimport { runFit } from \"./fit\";\n\nexport interface MatrixEntry {\n  version: string;\n  status: \"ok\" | \"error\" | \"cancelled\";\n  samplesFile?: string;\n  runtimeActual?: string;\n  elapsedMs: number;\n  stage?: FitResult[\"stage\"];\n  error?: string;\n}\n\nexport interface MatrixResult {\n  entries: MatrixEntry[];\n  /** True only when every requested version ran and succeeded. */\n  ok: boolean;\n}\n\nexport interface ResolvedInvocation {\n  command: string;\n  args: string[];\n  version?: string;\n}\n\nexport interface MatrixIo {\n  spawn: FitRunner;\n  /** Directory the per-version samples files are written into. */\n  outDir: string;\n  /** Resolves a version/channel to a concrete invocation; injectable for tests. */\n  resolve: (version: string) => Promise<ResolvedInvocation>;\n  /** Provisions the managed env for a resolved version and returns its dir. */\n  ensure: (resolved: ResolvedInvocation) => Promise<string>;\n  /** Source path when the data came from a referenced file; recorded per version. */\n  dataFile?: string;\n  /** Overrides the recorded data hash (the data file's bytes hash). */\n  dataSha256?: string;\n  /** Continue after a version fails instead of stopping. */\n  keepGoing?: boolean;\n}\n\n/** Runs the same spec across several Julia versions, one samples file per version. */\nexport async function runMatrix(\n  spec: ResolvedSpec,\n  versions: string[],\n  io: MatrixIo,\n): Promise<MatrixResult> {\n  const entries: MatrixEntry[] = [];\n  for (const version of versions) {\n    let entry: MatrixEntry;\n    try {\n      const resolved = await io.resolve(version);\n      const projectDir = await io.ensure(resolved);\n      const versioned = { ...spec, backend: { ...spec.backend, version } };\n      const result = await runFit(versioned, resolved, {\n        spawn: io.spawn,\n        projectDir,\n        outPath: join(io.outDir, `${version}.samples.json`),\n        dataFile: io.dataFile,\n        dataSha256: io.dataSha256,\n      });\n      entry = {\n        version,\n        status: result.status,\n        samplesFile: result.samplesFile,\n        runtimeActual: result.runtimeActual,\n        elapsedMs: result.elapsedMs,\n        stage: result.stage,\n        error: result.error,\n      };\n    } catch (error) {\n      entry = { version, status: \"error\", elapsedMs: 0, error: (error as Error).message };\n    }\n    entries.push(entry);\n    // A cancelled run stops the whole matrix regardless of keepGoing.\n    if (entry.status === \"cancelled\") break;\n    if (entry.status === \"error\" && !io.keepGoing) break;\n  }\n  return {\n    entries,\n    ok: entries.length === versions.length && entries.every((e) => e.status === \"ok\"),\n  };\n}\n","import { DEFAULT_JULIA_CHANNEL } from \"@mcmcjs/core\";\nimport { type DoctorReport, runDoctor } from \"./doctor\";\nimport { type CommandRunner, createRunner, type ToolInfo } from \"./environment\";\n\n/** The official juliaup install script, piped to a shell by the install step. */\nconst JULIAUP_INSTALL_URL = \"https://install.julialang.org\";\n\n/** An executable and its arguments, run directly (no shell word-splitting). */\nexport interface InstallCommand {\n  command: string;\n  args: string[];\n}\n\n/**\n * The command that installs juliaup on the given platform, or null when\n * automatic install is not yet supported there.\n */\nexport function juliaupInstallCommand(platform: NodeJS.Platform): InstallCommand | null {\n  if (platform === \"win32\") {\n    // TODO: install juliaup on Windows via winget or the Microsoft Store.\n    return null;\n  }\n  // `--default-channel` makes the installer add the pinned Julia version (not\n  // just the latest \"release\") in the same step, so a clean machine lands on\n  // the exact version the committed Manifest was resolved for.\n  return {\n    command: \"sh\",\n    args: [\n      \"-c\",\n      `curl -fsSL ${JULIAUP_INSTALL_URL} | sh -s -- --yes --default-channel ${DEFAULT_JULIA_CHANNEL}`,\n    ],\n  };\n}\n\n/** A single provisioning step needed to make the toolchain ready. */\nexport interface SetupStep {\n  tool: \"juliaup\" | \"julia\";\n  /** A short description of what the step does. */\n  label: string;\n  /** The command to run, or null when the step cannot be performed automatically. */\n  command: InstallCommand | null;\n}\n\n/** The ordered steps needed to reach a ready toolchain, given the current state. */\nexport function planSetup(report: DoctorReport, platform: NodeJS.Platform): SetupStep[] {\n  // The pinned Julia is already the active default: nothing to do.\n  if (report.julia.found && report.julia.version === DEFAULT_JULIA_CHANNEL) return [];\n  if (report.juliaup.found) {\n    return [\n      {\n        tool: \"julia\",\n        label: `install the pinned Julia ${DEFAULT_JULIA_CHANNEL} via juliaup`,\n        command: {\n          command: report.juliaup.path ?? \"juliaup\",\n          args: [\"add\", DEFAULT_JULIA_CHANNEL],\n        },\n      },\n    ];\n  }\n  return [\n    {\n      tool: \"juliaup\",\n      label: `install juliaup with the pinned Julia ${DEFAULT_JULIA_CHANNEL}`,\n      command: juliaupInstallCommand(platform),\n    },\n  ];\n}\n\nexport type StepStatus = \"ran\" | \"skipped\" | \"failed\" | \"unsupported\";\n\nexport interface SetupStepResult extends SetupStep {\n  status: StepStatus;\n  /** Error detail when the step failed. */\n  detail?: string;\n}\n\nexport interface SetupResult {\n  juliaup: ToolInfo;\n  julia: ToolInfo;\n  /** True when Julia is available after setup. */\n  ready: boolean;\n  steps: SetupStepResult[];\n}\n\nexport interface SetupOptions {\n  /** Runs detection commands. Injectable for tests. */\n  runner?: CommandRunner;\n  /** Runs install steps, which may take several minutes. Injectable for tests. */\n  installer?: CommandRunner;\n  /** Target platform; defaults to the current process platform. */\n  platform?: NodeJS.Platform;\n  /** Plan the steps but do not run them. */\n  dryRun?: boolean;\n}\n\n/** Installs the Julia toolchain (juliaup and Julia) needed for inference. */\nexport async function runSetup(options: SetupOptions = {}): Promise<SetupResult> {\n  const {\n    runner,\n    installer = createRunner(15 * 60_000),\n    platform = process.platform,\n    dryRun = false,\n  } = options;\n\n  const before = await runDoctor(runner);\n  const plan = planSetup(before, platform);\n  // Nothing to install only when the pinned Julia is already the active\n  // default; a different installed Julia still triggers a pinned-version add.\n  if (plan.length === 0) return { ...before, steps: [] };\n\n  if (dryRun) {\n    return {\n      ...before,\n      steps: plan.map((step) => ({ ...step, status: step.command ? \"skipped\" : \"unsupported\" })),\n    };\n  }\n\n  const steps: SetupStepResult[] = [];\n  for (const step of plan) {\n    if (!step.command) {\n      steps.push({ ...step, status: \"unsupported\" });\n      continue;\n    }\n    try {\n      await installer(step.command.command, step.command.args);\n      steps.push({ ...step, status: \"ran\" });\n    } catch (error) {\n      const detail = error instanceof Error ? error.message : String(error);\n      steps.push({ ...step, status: \"failed\", detail });\n    }\n  }\n\n  const after = await runDoctor(runner);\n  return { juliaup: after.juliaup, julia: after.julia, ready: after.ready, steps };\n}\n","import type { CommandRunner, RuntimeVersion } from \"@mcmcjs/engine\";\n\ninterface ChannelInfo {\n  Name: string;\n  File: string;\n  Args?: string[];\n  Version?: string;\n  Arch?: string;\n}\n\ninterface Getconfig1 {\n  DefaultChannel: ChannelInfo | null;\n  OtherChannels: ChannelInfo[];\n}\n\nfunction parseChannel(value: unknown): ChannelInfo {\n  const c = value as Record<string, unknown>;\n  if (!c || typeof c.Name !== \"string\" || typeof c.File !== \"string\") {\n    throw new Error(\"unexpected `juliaup api getconfig1` channel shape\");\n  }\n  return {\n    Name: c.Name,\n    File: c.File,\n    Args: Array.isArray(c.Args) ? (c.Args as string[]) : undefined,\n    Version: typeof c.Version === \"string\" ? c.Version : undefined,\n    Arch: typeof c.Arch === \"string\" ? c.Arch : undefined,\n  };\n}\n\nfunction parseGetconfig1(raw: string): Getconfig1 {\n  let data: unknown;\n  try {\n    data = JSON.parse(raw);\n  } catch {\n    throw new Error(\"could not parse `juliaup api getconfig1` output as JSON\");\n  }\n  const obj = data as Record<string, unknown>;\n  if (!obj || typeof obj !== \"object\" || !Array.isArray(obj.OtherChannels)) {\n    throw new Error(\"unexpected `juliaup api getconfig1` output\");\n  }\n  return {\n    DefaultChannel: obj.DefaultChannel ? parseChannel(obj.DefaultChannel) : null,\n    OtherChannels: obj.OtherChannels.map(parseChannel),\n  };\n}\n\nfunction toVersion(channel: ChannelInfo, isDefault: boolean): RuntimeVersion {\n  return { id: channel.Name, version: channel.Version, path: channel.File || undefined, isDefault };\n}\n\n/** Lists the installed Julia versions, marking the default channel. */\nexport async function listVersions(bin: string, run: CommandRunner): Promise<RuntimeVersion[]> {\n  const config = parseGetconfig1(await run(bin, [\"api\", \"getconfig1\"]));\n  const versions: RuntimeVersion[] = [];\n  if (config.DefaultChannel) versions.push(toVersion(config.DefaultChannel, true));\n  for (const channel of config.OtherChannels) versions.push(toVersion(channel, false));\n  return versions;\n}\n\nexport async function addVersion(\n  bin: string,\n  channel: string,\n  opts: { default?: boolean },\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, [\"add\", channel]);\n  if (opts.default) await run(bin, [\"default\", channel]);\n}\n\nexport async function removeVersion(\n  bin: string,\n  channel: string,\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, [\"remove\", channel]);\n}\n\nexport async function setDefaultVersion(\n  bin: string,\n  channel: string,\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, [\"default\", channel]);\n}\n\nexport async function updateVersion(\n  bin: string,\n  channel: string | undefined,\n  run: CommandRunner,\n): Promise<void> {\n  await run(bin, channel ? [\"update\", channel] : [\"update\"]);\n}\n\nexport async function gcVersions(bin: string, run: CommandRunner): Promise<void> {\n  await run(bin, [\"gc\"]);\n}\n\n/** Resolves a channel to a concrete invocation, preferring its absolute binary path. */\nexport async function resolveVersion(\n  bin: string,\n  channel: string,\n  run: CommandRunner,\n): Promise<{ command: string; args: string[]; version?: string }> {\n  const config = parseGetconfig1(await run(bin, [\"api\", \"getconfig1\"]));\n  const all = config.DefaultChannel\n    ? [config.DefaultChannel, ...config.OtherChannels]\n    : config.OtherChannels;\n  const match = all.find((c) => c.Name === channel);\n  if (!match?.File) {\n    throw new Error(\n      `Julia version \"${channel}\" is not installed. Add it with: mcmc julia version add ${channel}`,\n    );\n  }\n  return { command: match.File, args: match.Args ?? [], version: match.Version };\n}\n\n/** Throws with an actionable message if any requested channel is not installed. */\nexport function assertVersionsInstalled(channels: string[], installed: RuntimeVersion[]): void {\n  const have = new Set(installed.map((v) => v.id));\n  const missing = channels.filter((c) => !have.has(c));\n  if (missing.length > 0) {\n    const fixes = missing.map((m) => `mcmc julia version add ${m}`).join(\"; \");\n    throw new Error(\n      `Julia version(s) not installed: ${missing.join(\", \")}. Install with: ${fixes}`,\n    );\n  }\n}\n","import { spawn } from \"node:child_process\";\nimport { mkdirSync, readdirSync, readFileSync, rmdirSync, rmSync, statSync } from \"node:fs\";\nimport { createConnection, type Socket } from \"node:net\";\nimport { join } from \"node:path\";\nimport type { ResolvedSpec } from \"@mcmcjs/core\";\nimport type { FitResult } from \"@mcmcjs/engine\";\nimport { parseDrawBatchLine, parseProgressLine } from \"@mcmcjs/engine\";\nimport { type FitIo, finalizeOkFit, fitRequest, runFit } from \"./fit\";\nimport { sha256, sharedTmpParent, toStage, workerPath } from \"./runner-common\";\n\nconst START_WAIT_MS = 180_000;\nconst CONNECT_TIMEOUT_MS = 1_000;\nconst STOP_ACK_TIMEOUT_MS = 3_000;\n\n/** Same 30-minute budget as the one-shot driver; MCMC_WORKER_TIMEOUT_MS overrides. */\nfunction fitInactivityTimeoutMs(): number {\n  const fromEnv = Number(process.env.MCMC_WORKER_TIMEOUT_MS);\n  return Number.isFinite(fromEnv) && fromEnv > 0 ? fromEnv : 30 * 60_000;\n}\n\n/** A hung worker is not retried; the fit is reported failed instead. */\nclass WorkerTimeoutError extends Error {}\n\n/** The caller aborted the fit; the worker is killed and the run ends cancelled. */\nclass FitCancelledError extends Error {}\n\n/** The pidfile a worker writes beside its socket so a fit can be killed cross-process. */\nfunction workerPidPath(socket: string): string {\n  return `${socket}.pid`;\n}\n\n/**\n * Force-kills the worker serving `socket` (by the pid it wrote beside the\n * socket) and clears the socket and pidfile, so the next fit cold-starts a\n * fresh worker. Used to stop a worker mid-fit, which the polite stop cannot do\n * while it is busy sampling.\n */\nexport function killWorker(socket: string): void {\n  const pidPath = workerPidPath(socket);\n  try {\n    const pid = Number(readFileSync(pidPath, \"utf8\").trim());\n    if (Number.isInteger(pid) && pid > 0) {\n      // The worker is a detached process-group leader, so signaling -pid takes\n      // down any precompile/child processes it spawned, not just the parent.\n      try {\n        process.kill(-pid, \"SIGKILL\");\n      } catch {\n        process.kill(pid, \"SIGKILL\");\n      }\n    }\n  } catch {}\n  rmSync(socket, { force: true });\n  rmSync(pidPath, { force: true });\n}\n\n/** Where worker sockets live; runtime dir when available, the shared tmp parent otherwise. */\nexport function workersDir(): string {\n  const runtime = process.env.XDG_RUNTIME_DIR;\n  const dir = runtime ? join(runtime, \"mcmcjs\") : join(sharedTmpParent(), \"workers\");\n  mkdirSync(dir, { recursive: true, mode: 0o700 });\n  return dir;\n}\n\n/** One worker per (Julia binary, project env) pair, named by a key hash. */\nexport function workerSocketPath(command: string, projectDir: string): string {\n  return join(workersDir(), `worker-${sha256(`${command}\\n${projectDir}`).slice(0, 12)}.sock`);\n}\n\nfunction connectOnce(path: string): Promise<Socket> {\n  return new Promise((resolve, reject) => {\n    const sock = createConnection(path);\n    const timer = setTimeout(() => {\n      sock.destroy();\n      reject(new Error(\"connect timeout\"));\n    }, CONNECT_TIMEOUT_MS);\n    sock.once(\"connect\", () => {\n      clearTimeout(timer);\n      resolve(sock);\n    });\n    sock.once(\"error\", (error) => {\n      clearTimeout(timer);\n      reject(error);\n    });\n  });\n}\n\nconst delay = (ms: number) => new Promise((resolve) => setTimeout(resolve, ms));\n\n/**\n * Serializes cold starts: only one invocation spawns a worker per socket path;\n * the rest poll the socket. 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Throws on worker-infrastructure failure. */\nexport async function runFitViaWorker(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: FitIo & { notify?: (line: string) => void },\n): Promise<FitResult> {\n  const startedAt = new Date().toISOString();\n  const start = performance.now();\n  if (io.signal?.aborted) {\n    return { status: \"cancelled\", runtimeRequested: spec.backend.version, elapsedMs: 0 };\n  }\n  let sock: Socket;\n  try {\n    sock = await ensureWorker(resolved, io.projectDir, io.notify, io.signal);\n  } catch (error) {\n    // Cancelled during the cold start: the worker (if any) is still idle and\n    // stays warm; no fit was dispatched, so just report cancelled.\n    if (error instanceof FitCancelledError) {\n      return {\n        status: \"cancelled\",\n        runtimeRequested: spec.backend.version,\n        elapsedMs: Math.round(performance.now() - start),\n      };\n    }\n    throw error;\n  }\n  if (io.signal?.aborted) {\n    // Aborted in the gap before dispatch; drop the connection, leave the worker\n    // idle and warm. The worker reads an empty line and loops back to accept.\n    sock.destroy();\n    return {\n      status: \"cancelled\",\n      runtimeRequested: spec.backend.version,\n      elapsedMs: Math.round(performance.now() - start),\n    };\n  }\n  sock.write(\n    `${JSON.stringify(fitRequest(spec, io.outPath, { streamDraws: io.onDraws !== undefined, drawBatchSize: io.drawBatchSize }))}\\n`,\n  );\n  let final: Record<string, unknown>;\n  try {\n    final = await readWorkerResponse(sock, io.onProgress, io.onDraws, io.signal);\n  } catch (error) {\n    if (error instanceof FitCancelledError) {\n      // The worker is mid-sample and cannot answer a polite stop; kill it so it\n      // stops promptly and the next fit cold-starts a fresh one.\n      killWorker(workerSocketPath(resolved.command, io.projectDir));\n      return {\n        status: \"cancelled\",\n        runtimeRequested: spec.backend.version,\n        elapsedMs: Math.round(performance.now() - start),\n      };\n    }\n    throw error;\n  }\n  const elapsedMs = Math.round(performance.now() - start);\n\n  if (final.ok !== true) {\n    // \"worker\" is the worker's own protocol failure, not a model failure;\n    // throwing hands the fit to the one-shot driver.\n    if (final.stage === \"worker\") throw new Error(String(final.error ?? \"worker error\"));\n    return {\n      status: \"error\",\n      runtimeRequested: spec.backend.version,\n      elapsedMs,\n      stage: toStage(final.stage),\n      error: String(final.error ?? \"worker error\"),\n    };\n  }\n  return finalizeOkFit(\n    spec,\n    resolved,\n    io,\n    final.provenance as Record<string, unknown> | undefined,\n    startedAt,\n    elapsedMs,\n  );\n}\n\n/**\n * Runs a fit through the worker when asked (and possible), falling back to the\n * one-shot driver on worker-infrastructure failures. Two exceptions never fall\n * back: a fit that genuinely failed (model error) is returned, and a hung\n * worker (timeout) is reported rather than silently re-run for another\n * half hour.\n */\nexport async function runFitAuto(\n  spec: ResolvedSpec,\n  resolved: { command: string; args: string[] },\n  io: FitIo & { daemon?: boolean; notify?: (line: string) => void },\n): Promise<FitResult> {\n  if (io.signal?.aborted) {\n    return { status: \"cancelled\", runtimeRequested: spec.backend.version, elapsedMs: 0 };\n  }\n  // Distributed sampling spawns worker processes and includes the model into\n  // Main; the persistent worker's isolation cannot host that, so it runs one-shot.\n  if (io.daemon && process.platform !== \"win32\" && spec.sampler.parallel !== \"distributed\") {\n    const start = performance.now();\n    try {\n      return await runFitViaWorker(spec, resolved, io);\n    } catch (error) {\n      if (error instanceof WorkerTimeoutError) {\n        return {\n          status: \"error\",\n          runtimeRequested: spec.backend.version,\n          elapsedMs: Math.round(performance.now() - start),\n          stage: \"worker\",\n          error: `${error.message}; the worker may be wedged, try mcmc daemon stop`,\n        };\n      }\n      io.notify?.(\n        `worker unavailable (${(error as Error).message}); falling back to a one-shot run`,\n      );\n    }\n  }\n  return runFit(spec, resolved, io);\n}\n\nexport interface WorkerStatus {\n  socket: string;\n  alive: boolean;\n}\n\n/** Lists known worker sockets and whether each answers. */\nexport async function listWorkers(): Promise<WorkerStatus[]> {\n  const dir = workersDir();\n  const sockets = readdirSync(dir).filter((f) => f.startsWith(\"worker-\") && f.endsWith(\".sock\"));\n  const statuses: WorkerStatus[] = [];\n  for (const name of sockets) {\n    const socket = join(dir, name);\n    let alive = false;\n    try {\n      const sock = await connectOnce(socket);\n      sock.destroy();\n      alive = true;\n    } catch {}\n    statuses.push({ socket, alive });\n  }\n  return statuses;\n}\n\nexport type StopOutcome = \"stopped\" | \"stale\" | \"pending\";\n\n/**\n * Asks one worker to shut down. \"stopped\": acknowledged and gone. \"stale\": the\n * socket was dead and its file was removed. \"pending\": the worker is busy with\n * a fit; the stop request is queued and honored when the fit finishes, so the\n * live socket file is left alone.\n */\nexport async function stopWorker(socket: string): Promise<StopOutcome> {\n  let sock: Socket;\n  try {\n    sock = await connectOnce(socket);\n  } catch {\n    rmSync(socket, { force: true });\n    return \"stale\";\n  }\n  const acked = await new Promise<boolean>((resolve) => {\n    const timer = setTimeout(() => resolve(false), STOP_ACK_TIMEOUT_MS);\n    const finish = (ok: boolean) => {\n      clearTimeout(timer);\n      resolve(ok);\n    };\n    // Without a flowing readable side the worker's FIN is never surfaced.\n    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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@mcmcjs/julia",
-  "version": "0.13.0",
+  "version": "0.14.0",
   "description": "Julia toolchain detection and the inference runner for MCMC.js.",
   "keywords": [
     "mcmc",
@@ -46,8 +46,8 @@
     "access": "public"
   },
   "dependencies": {
-    "@mcmcjs/engine": "0.6.0",
-    "@mcmcjs/core": "0.10.0"
+    "@mcmcjs/core": "0.11.0",
+    "@mcmcjs/engine": "0.6.0"
   },
   "scripts": {
     "build": "tsup",